Query 037178
Match_columns 311
No_of_seqs 336 out of 1605
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.6E-36 1.2E-40 272.0 13.0 198 81-280 7-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.8E-34 2.3E-38 257.1 20.0 182 64-248 27-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 2.1E-23 7.3E-28 192.9 20.8 235 53-292 74-433 (597)
4 2xpi_A Anaphase-promoting comp 99.9 4.2E-23 1.5E-27 190.9 21.4 233 54-292 294-542 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 8.7E-23 3E-27 191.2 8.1 152 128-280 122-286 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.9 4.2E-22 1.4E-26 186.6 7.1 132 164-302 127-265 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 2.4E-17 8.2E-22 144.4 26.1 228 65-303 137-372 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.8 2.8E-17 9.5E-22 144.0 21.6 224 62-292 66-331 (388)
9 2y4t_A DNAJ homolog subfamily 99.8 5.2E-17 1.8E-21 144.7 19.7 232 61-302 24-289 (450)
10 4eqf_A PEX5-related protein; a 99.8 7.4E-17 2.5E-21 140.0 19.1 232 58-293 60-308 (365)
11 2y4t_A DNAJ homolog subfamily 99.7 3.5E-16 1.2E-20 139.4 22.6 229 63-303 94-362 (450)
12 1fch_A Peroxisomal targeting s 99.7 2.4E-15 8.2E-20 130.3 22.6 222 62-290 63-354 (368)
13 3mkr_A Coatomer subunit epsilo 99.7 3.1E-15 1.1E-19 126.1 21.5 218 65-292 36-261 (291)
14 3hym_B Cell division cycle pro 99.7 5.5E-15 1.9E-19 125.7 23.1 233 61-303 54-303 (330)
15 3hym_B Cell division cycle pro 99.7 5.2E-15 1.8E-19 125.9 22.8 225 61-292 20-262 (330)
16 1b89_A Protein (clathrin heavy 99.7 6.4E-17 2.2E-21 141.1 10.7 210 53-292 24-233 (449)
17 3cv0_A Peroxisome targeting si 99.7 3.2E-15 1.1E-19 127.0 18.0 226 61-292 19-266 (327)
18 4eqf_A PEX5-related protein; a 99.7 1.4E-15 4.7E-20 132.0 14.9 225 60-292 96-353 (365)
19 3cv0_A Peroxisome targeting si 99.6 6.2E-15 2.1E-19 125.3 16.6 225 61-292 53-312 (327)
20 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.4E-19 116.0 17.7 193 61-260 3-210 (217)
21 3ieg_A DNAJ homolog subfamily 99.6 5.8E-14 2E-18 120.6 19.6 224 63-292 3-260 (359)
22 2gw1_A Mitochondrial precursor 99.6 2.4E-14 8.4E-19 129.3 17.0 157 133-292 237-398 (514)
23 3uq3_A Heat shock protein STI1 99.6 5.4E-14 1.9E-18 115.2 17.5 215 64-292 6-233 (258)
24 3ieg_A DNAJ homolog subfamily 99.6 2.3E-13 7.9E-18 116.8 22.1 231 62-303 70-339 (359)
25 1fch_A Peroxisomal targeting s 99.6 1.3E-13 4.6E-18 119.2 20.1 215 73-292 35-311 (368)
26 2vq2_A PILW, putative fimbrial 99.6 1.3E-13 4.3E-18 110.6 18.5 195 62-262 7-209 (225)
27 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 7.9E-18 111.5 20.2 193 63-262 37-236 (252)
28 2pl2_A Hypothetical conserved 99.6 4.6E-14 1.6E-18 113.7 15.3 192 94-292 2-211 (217)
29 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-13 5.9E-18 112.3 19.1 192 97-292 37-235 (252)
30 2gw1_A Mitochondrial precursor 99.6 4.2E-14 1.4E-18 127.8 16.2 225 62-292 236-475 (514)
31 3fp2_A TPR repeat-containing p 99.6 2.6E-13 9.1E-18 123.4 20.3 63 60-123 56-119 (537)
32 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-13 6.7E-18 113.2 17.8 209 76-292 18-241 (275)
33 2q7f_A YRRB protein; TPR, prot 99.6 5.7E-14 2E-18 114.2 14.2 198 60-263 20-221 (243)
34 3u4t_A TPR repeat-containing p 99.6 5.4E-13 1.8E-17 110.5 20.0 222 65-292 5-247 (272)
35 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.9E-14 2E-18 116.4 13.1 222 62-289 42-269 (275)
36 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.6E-17 104.5 20.8 193 96-292 7-208 (225)
37 3fp2_A TPR repeat-containing p 99.5 9.2E-13 3.1E-17 119.8 21.8 222 65-292 245-488 (537)
38 3mkr_A Coatomer subunit epsilo 99.5 3.7E-13 1.2E-17 113.4 17.3 208 70-292 6-226 (291)
39 1ouv_A Conserved hypothetical 99.5 3.7E-12 1.3E-16 105.8 22.4 222 62-298 5-252 (273)
40 2q7f_A YRRB protein; TPR, prot 99.5 3.4E-13 1.2E-17 109.6 15.2 193 95-292 21-219 (243)
41 2h6f_A Protein farnesyltransfe 99.5 1.9E-12 6.5E-17 113.0 19.2 222 64-292 98-344 (382)
42 1b89_A Protein (clathrin heavy 99.5 1.4E-13 4.7E-18 120.2 10.7 177 60-262 58-234 (449)
43 2ond_A Cleavage stimulation fa 99.4 2.9E-11 9.8E-16 102.5 21.3 207 81-292 33-267 (308)
44 4abn_A Tetratricopeptide repea 99.4 3.4E-12 1.2E-16 114.9 16.3 208 79-292 83-318 (474)
45 3uq3_A Heat shock protein STI1 99.4 5E-12 1.7E-16 103.4 14.4 182 97-292 5-199 (258)
46 3u4t_A TPR repeat-containing p 99.3 2.6E-10 9E-15 94.1 21.1 197 61-263 35-249 (272)
47 3nf1_A KLC 1, kinesin light ch 99.3 1.6E-11 5.4E-16 103.3 13.8 228 62-292 26-304 (311)
48 3vtx_A MAMA; tetratricopeptide 99.3 6.9E-11 2.4E-15 92.0 16.3 155 134-292 6-167 (184)
49 4abn_A Tetratricopeptide repea 99.3 1.9E-11 6.6E-16 110.0 14.5 196 60-263 99-320 (474)
50 3nf1_A KLC 1, kinesin light ch 99.3 8.6E-12 2.9E-16 104.9 11.3 167 96-263 26-223 (311)
51 3vtx_A MAMA; tetratricopeptide 99.3 1.4E-10 4.6E-15 90.3 16.4 158 65-228 7-169 (184)
52 3as5_A MAMA; tetratricopeptide 99.3 2.4E-10 8.1E-15 88.3 17.3 157 133-292 8-170 (186)
53 1ouv_A Conserved hypothetical 99.3 4.9E-10 1.7E-14 92.9 19.8 191 95-298 4-216 (273)
54 3as5_A MAMA; tetratricopeptide 99.3 3E-10 1E-14 87.7 16.7 161 64-229 9-173 (186)
55 4a1s_A PINS, partner of inscut 99.3 1.5E-11 5.1E-16 108.1 9.9 227 64-292 87-369 (411)
56 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.2E-16 107.5 9.9 226 65-292 50-329 (411)
57 3ro2_A PINS homolog, G-protein 99.3 2.8E-11 9.7E-16 102.5 10.8 228 63-292 43-329 (338)
58 2h6f_A Protein farnesyltransfe 99.3 4.5E-10 1.5E-14 98.0 18.5 211 60-278 128-365 (382)
59 3sf4_A G-protein-signaling mod 99.2 5.1E-11 1.7E-15 104.1 12.2 127 166-292 189-333 (406)
60 3sf4_A G-protein-signaling mod 99.2 3.5E-11 1.2E-15 105.1 10.8 198 65-263 89-335 (406)
61 2ond_A Cleavage stimulation fa 99.2 1E-09 3.5E-14 92.9 18.9 196 61-263 48-269 (308)
62 3ro2_A PINS homolog, G-protein 99.2 2.5E-10 8.7E-15 96.5 14.7 226 66-292 8-289 (338)
63 3ulq_A Response regulator aspa 99.2 1E-09 3.5E-14 95.7 18.7 224 69-293 109-366 (383)
64 4gyw_A UDP-N-acetylglucosamine 99.2 3.7E-10 1.3E-14 106.2 16.6 157 132-292 8-171 (723)
65 2ooe_A Cleavage stimulation fa 99.2 1.2E-09 4.1E-14 99.6 18.7 207 81-292 255-489 (530)
66 3edt_B KLC 2, kinesin light ch 99.2 2.5E-10 8.6E-15 94.3 12.8 212 79-292 16-278 (283)
67 4gyw_A UDP-N-acetylglucosamine 99.2 5E-10 1.7E-14 105.3 16.1 161 62-228 8-173 (723)
68 1xi4_A Clathrin heavy chain; a 99.2 3.4E-09 1.1E-13 103.4 21.8 203 62-292 1104-1306(1630)
69 3q15_A PSP28, response regulat 99.1 5E-09 1.7E-13 91.2 18.9 221 71-292 109-362 (378)
70 3edt_B KLC 2, kinesin light ch 99.1 4.7E-10 1.6E-14 92.7 11.6 155 108-263 12-197 (283)
71 2xm6_A Protein corresponding t 99.1 3.1E-08 1.1E-12 89.3 23.9 222 62-298 74-326 (490)
72 4i17_A Hypothetical protein; T 99.1 1.1E-08 3.9E-13 82.2 18.2 188 62-263 6-208 (228)
73 1hz4_A MALT regulatory protein 99.1 3E-08 1E-12 85.8 22.1 219 71-292 22-279 (373)
74 2fo7_A Synthetic consensus TPR 99.1 3.8E-09 1.3E-13 76.7 13.0 123 66-191 4-130 (136)
75 1xi4_A Clathrin heavy chain; a 99.1 2.3E-08 7.8E-13 97.7 21.6 196 66-292 1052-1247(1630)
76 2xm6_A Protein corresponding t 99.1 5.8E-08 2E-12 87.5 23.2 218 62-292 38-285 (490)
77 1qqe_A Vesicular transport pro 99.0 4.9E-09 1.7E-13 88.0 14.9 196 80-292 33-266 (292)
78 2fo7_A Synthetic consensus TPR 99.0 4.7E-09 1.6E-13 76.2 12.3 124 166-292 3-129 (136)
79 1qqe_A Vesicular transport pro 99.0 2.5E-08 8.5E-13 83.7 17.9 198 65-267 39-272 (292)
80 4g1t_A Interferon-induced prot 99.0 3.4E-08 1.2E-12 88.2 19.4 225 62-292 50-360 (472)
81 4i17_A Hypothetical protein; T 99.0 1.1E-08 3.7E-13 82.3 14.5 187 95-292 5-206 (228)
82 1hz4_A MALT regulatory protein 99.0 1.1E-08 3.9E-13 88.5 14.8 226 65-292 55-319 (373)
83 2pzi_A Probable serine/threoni 99.0 2.6E-08 9E-13 93.5 17.5 168 108-281 402-583 (681)
84 2ooe_A Cleavage stimulation fa 98.9 5E-08 1.7E-12 88.8 18.4 195 62-263 271-491 (530)
85 2pzi_A Probable serine/threoni 98.9 1.8E-08 6.2E-13 94.6 15.2 182 74-263 402-604 (681)
86 4g1t_A Interferon-induced prot 98.9 2.3E-08 7.8E-13 89.3 15.1 105 200-306 334-469 (472)
87 2r5s_A Uncharacterized protein 98.9 6E-08 2E-12 74.8 15.3 153 136-292 9-170 (176)
88 3qky_A Outer membrane assembly 98.9 5E-08 1.7E-12 80.2 15.5 164 61-229 13-224 (261)
89 3qou_A Protein YBBN; thioredox 98.9 7.3E-08 2.5E-12 80.6 16.4 159 130-292 114-281 (287)
90 3mv2_B Coatomer subunit epsilo 98.9 4.1E-08 1.4E-12 82.2 14.4 168 116-292 85-279 (310)
91 3ulq_A Response regulator aspa 98.8 5.5E-08 1.9E-12 84.6 14.4 189 103-292 109-332 (383)
92 4e6h_A MRNA 3'-END-processing 98.8 1.8E-07 6.1E-12 87.2 17.8 207 81-292 326-567 (679)
93 2r5s_A Uncharacterized protein 98.8 8.5E-08 2.9E-12 73.9 13.3 159 65-228 8-172 (176)
94 3mv2_B Coatomer subunit epsilo 98.8 8.2E-08 2.8E-12 80.3 14.0 175 83-263 85-281 (310)
95 3qou_A Protein YBBN; thioredox 98.8 1.7E-07 5.9E-12 78.3 16.1 163 93-260 113-280 (287)
96 3q15_A PSP28, response regulat 98.8 2.1E-07 7.2E-12 80.8 16.1 195 63-262 141-363 (378)
97 3qky_A Outer membrane assembly 98.8 1E-07 3.5E-12 78.3 12.9 164 95-263 13-223 (261)
98 3urz_A Uncharacterized protein 98.8 1.7E-07 5.9E-12 74.3 13.8 120 139-263 60-185 (208)
99 3urz_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 75.5 12.4 168 68-243 9-198 (208)
100 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4.1E-12 87.1 13.8 147 79-230 4-158 (568)
101 2ifu_A Gamma-SNAP; membrane fu 98.7 1.4E-07 4.9E-12 79.6 12.9 207 79-288 6-254 (307)
102 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.2E-07 1.1E-11 73.6 14.3 174 97-292 4-210 (225)
103 4ga2_A E3 SUMO-protein ligase 98.7 1.2E-07 4.1E-12 71.1 11.0 140 105-250 5-149 (150)
104 3u3w_A Transcriptional activat 98.7 1.1E-06 3.7E-11 73.6 17.9 153 139-292 81-263 (293)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.7E-07 1.9E-11 71.1 15.4 126 135-263 8-149 (213)
106 2vsy_A XCC0866; transferase, g 98.7 2.5E-07 8.6E-12 84.9 14.5 148 110-263 2-156 (568)
107 4ga2_A E3 SUMO-protein ligase 98.7 4.9E-08 1.7E-12 73.3 7.8 138 140-281 4-149 (150)
108 3e4b_A ALGK; tetratricopeptide 98.7 2.5E-06 8.4E-11 76.1 19.6 220 65-298 143-388 (452)
109 3dra_A Protein farnesyltransfe 98.6 1.7E-05 5.7E-10 66.7 22.4 217 70-292 39-284 (306)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.8E-07 1.3E-11 72.1 11.8 122 165-292 7-147 (213)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.8E-06 9.7E-11 68.1 16.6 178 64-262 5-211 (225)
112 3gw4_A Uncharacterized protein 98.6 1.5E-07 5.3E-12 73.7 8.4 172 108-292 3-193 (203)
113 2qfc_A PLCR protein; TPR, HTH, 98.6 5E-06 1.7E-10 69.5 17.9 155 137-292 79-263 (293)
114 3rjv_A Putative SEL1 repeat pr 98.6 1.1E-06 3.9E-11 69.8 13.3 153 135-292 20-194 (212)
115 2ifu_A Gamma-SNAP; membrane fu 98.6 7.7E-07 2.6E-11 75.1 12.5 185 65-257 38-254 (307)
116 4f3v_A ESX-1 secretion system 98.5 3.1E-06 1.1E-10 69.8 14.5 183 75-263 18-236 (282)
117 2qfc_A PLCR protein; TPR, HTH, 98.5 5.1E-06 1.8E-10 69.4 16.2 164 98-262 76-264 (293)
118 3u3w_A Transcriptional activat 98.5 2.7E-06 9.2E-11 71.1 14.4 118 70-189 82-221 (293)
119 1na0_A Designed protein CTPR3; 98.5 1.4E-06 4.6E-11 62.0 11.0 93 64-159 10-103 (125)
120 2c2l_A CHIP, carboxy terminus 98.5 9.9E-07 3.4E-11 73.5 11.5 186 96-292 3-196 (281)
121 1a17_A Serine/threonine protei 98.5 2.1E-06 7.2E-11 64.6 12.1 123 65-190 15-143 (166)
122 1na0_A Designed protein CTPR3; 98.5 3.4E-06 1.2E-10 59.9 12.4 94 134-229 10-106 (125)
123 3gw4_A Uncharacterized protein 98.5 1.2E-06 3.9E-11 68.6 10.7 128 165-292 27-173 (203)
124 2lni_A Stress-induced-phosphop 98.5 1.9E-06 6.6E-11 62.1 11.1 112 132-247 15-130 (133)
125 2c2l_A CHIP, carboxy terminus 98.5 2.7E-07 9.1E-12 77.0 6.9 191 62-263 3-198 (281)
126 3e4b_A ALGK; tetratricopeptide 98.5 8E-06 2.7E-10 72.8 16.9 154 135-299 178-353 (452)
127 2vyi_A SGTA protein; chaperone 98.5 2.4E-06 8.3E-11 61.2 11.2 114 133-250 12-129 (131)
128 2e2e_A Formate-dependent nitri 98.5 7.4E-07 2.5E-11 68.4 8.8 115 75-192 22-143 (177)
129 3rjv_A Putative SEL1 repeat pr 98.4 2.5E-05 8.7E-10 61.9 17.9 161 61-231 16-199 (212)
130 1a17_A Serine/threonine protei 98.4 3.3E-06 1.1E-10 63.5 11.7 123 135-261 15-143 (166)
131 2lni_A Stress-induced-phosphop 98.4 3E-06 1E-10 61.1 11.0 113 62-177 15-131 (133)
132 3gyz_A Chaperone protein IPGC; 98.4 2.2E-06 7.6E-11 64.3 10.3 92 135-229 38-133 (151)
133 1p5q_A FKBP52, FK506-binding p 98.4 1.4E-06 4.9E-11 74.5 10.2 119 132-254 146-283 (336)
134 2vyi_A SGTA protein; chaperone 98.4 3.7E-06 1.3E-10 60.2 10.8 111 65-178 14-128 (131)
135 4e6h_A MRNA 3'-END-processing 98.4 6.8E-06 2.3E-10 76.6 14.2 198 62-263 342-569 (679)
136 3q7a_A Farnesyltransferase alp 98.3 0.00021 7.1E-09 60.9 21.9 216 71-292 61-328 (349)
137 2fbn_A 70 kDa peptidylprolyl i 98.3 6.7E-07 2.3E-11 70.1 6.1 153 139-292 10-183 (198)
138 1p5q_A FKBP52, FK506-binding p 98.3 6.5E-06 2.2E-10 70.4 12.0 142 147-292 127-291 (336)
139 4gco_A Protein STI-1; structur 98.3 1.1E-05 3.9E-10 58.3 11.1 90 66-158 16-106 (126)
140 3gyz_A Chaperone protein IPGC; 98.3 3.5E-06 1.2E-10 63.2 8.5 94 97-192 36-132 (151)
141 4gco_A Protein STI-1; structur 98.3 1.3E-05 4.6E-10 57.9 11.4 105 134-242 14-122 (126)
142 2e2e_A Formate-dependent nitri 98.3 7.9E-06 2.7E-10 62.5 10.5 117 108-229 21-144 (177)
143 2vgx_A Chaperone SYCD; alterna 98.2 3E-06 1E-10 63.3 7.4 91 135-228 23-117 (148)
144 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.8E-10 55.4 10.0 91 100-192 9-105 (112)
145 1elw_A TPR1-domain of HOP; HOP 98.2 3.8E-05 1.3E-09 53.7 12.2 95 165-263 5-100 (118)
146 2dba_A Smooth muscle cell asso 98.2 3.1E-05 1.1E-09 56.8 12.0 96 163-262 27-126 (148)
147 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.4E-10 55.2 9.5 91 201-292 7-103 (112)
148 2vgx_A Chaperone SYCD; alterna 98.2 9.8E-06 3.4E-10 60.4 8.7 92 99-192 23-117 (148)
149 4b4t_Q 26S proteasome regulato 98.1 4.1E-05 1.4E-09 67.2 13.8 192 70-262 11-243 (434)
150 2xcb_A PCRH, regulatory protei 98.1 9.4E-06 3.2E-10 59.9 8.0 86 139-227 24-113 (142)
151 3q49_B STIP1 homology and U bo 98.1 3E-05 1E-09 56.3 10.4 92 98-191 10-104 (137)
152 1elw_A TPR1-domain of HOP; HOP 98.1 4.2E-05 1.4E-09 53.5 10.9 90 66-158 7-97 (118)
153 2xcb_A PCRH, regulatory protei 98.1 1.5E-05 5E-10 58.8 8.7 92 99-192 20-114 (142)
154 1elr_A TPR2A-domain of HOP; HO 98.1 1.5E-05 5.1E-10 57.0 8.6 94 167-262 7-106 (131)
155 3sz7_A HSC70 cochaperone (SGT) 98.1 3E-05 1E-09 58.5 10.7 93 166-262 13-106 (164)
156 4b4t_Q 26S proteasome regulato 98.1 3.4E-05 1.1E-09 67.8 12.5 188 104-292 11-242 (434)
157 3ro3_A PINS homolog, G-protein 98.1 7.5E-06 2.6E-10 60.9 7.0 58 134-191 10-76 (164)
158 3q49_B STIP1 homology and U bo 98.1 6.4E-05 2.2E-09 54.5 11.7 96 163-262 8-104 (137)
159 3upv_A Heat shock protein STI1 98.1 3E-05 1E-09 55.6 9.8 95 165-263 5-100 (126)
160 1elr_A TPR2A-domain of HOP; HO 98.1 2.4E-05 8.2E-10 55.9 9.0 26 166-191 81-106 (131)
161 3upv_A Heat shock protein STI1 98.1 4.5E-05 1.5E-09 54.7 10.5 91 100-192 7-100 (126)
162 4gcn_A Protein STI-1; structur 98.1 4.9E-05 1.7E-09 54.9 10.6 91 135-228 10-111 (127)
163 1hxi_A PEX5, peroxisome target 98.0 2.6E-05 8.9E-10 55.9 8.9 93 65-160 19-112 (121)
164 2dba_A Smooth muscle cell asso 98.0 9.3E-05 3.2E-09 54.1 12.3 96 62-160 27-126 (148)
165 3sz7_A HSC70 cochaperone (SGT) 98.0 2.8E-05 9.7E-10 58.7 9.5 92 65-159 13-105 (164)
166 1wao_1 Serine/threonine protei 98.0 3.5E-05 1.2E-09 69.1 11.2 114 106-224 15-134 (477)
167 3dra_A Protein farnesyltransfe 98.0 0.00035 1.2E-08 58.6 16.6 199 64-267 68-291 (306)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.3E-05 1.1E-09 68.9 11.0 118 134-255 269-405 (457)
169 2uy1_A Cleavage stimulation fa 98.0 0.00063 2.1E-08 61.2 19.3 201 80-293 195-411 (493)
170 4f3v_A ESX-1 secretion system 98.0 8.2E-05 2.8E-09 61.4 12.2 136 101-242 106-248 (282)
171 3ro3_A PINS homolog, G-protein 98.0 3.4E-05 1.2E-09 57.2 9.1 58 100-158 12-74 (164)
172 2fbn_A 70 kDa peptidylprolyl i 98.0 4.5E-05 1.6E-09 59.5 10.2 92 64-158 39-147 (198)
173 2if4_A ATFKBP42; FKBP-like, al 98.0 3.6E-05 1.2E-09 65.8 9.8 122 167-292 182-325 (338)
174 2xev_A YBGF; tetratricopeptide 97.9 0.00014 4.7E-09 52.0 11.3 89 170-262 8-103 (129)
175 1hxi_A PEX5, peroxisome target 97.9 4.1E-05 1.4E-09 54.8 8.3 84 208-292 25-111 (121)
176 4gcn_A Protein STI-1; structur 97.9 4.5E-05 1.5E-09 55.1 8.3 59 166-227 10-69 (127)
177 1wao_1 Serine/threonine protei 97.9 2.6E-05 8.9E-10 70.0 7.5 118 68-188 11-134 (477)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00013 4.3E-09 65.1 11.8 143 146-292 247-412 (457)
179 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.3E-09 62.7 11.2 118 135-256 225-362 (370)
180 3k9i_A BH0479 protein; putativ 97.8 2.3E-05 8E-10 55.5 4.9 82 110-192 3-89 (117)
181 3k9i_A BH0479 protein; putativ 97.8 1.6E-05 5.6E-10 56.4 3.7 84 177-262 3-88 (117)
182 3n71_A Histone lysine methyltr 97.8 7E-05 2.4E-09 67.2 8.3 121 172-292 317-461 (490)
183 3dss_A Geranylgeranyl transfer 97.8 0.0037 1.2E-07 52.9 18.4 213 73-292 39-301 (331)
184 2xev_A YBGF; tetratricopeptide 97.7 0.00035 1.2E-08 49.8 10.5 54 70-124 9-66 (129)
185 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00016 5.5E-09 61.7 8.5 143 65-229 181-328 (338)
186 2l6j_A TPR repeat-containing p 97.6 5.6E-05 1.9E-09 52.5 4.7 92 64-159 5-104 (111)
187 2l6j_A TPR repeat-containing p 97.6 5.2E-05 1.8E-09 52.7 4.2 90 202-292 6-104 (111)
188 2hr2_A Hypothetical protein; a 97.6 0.00049 1.7E-08 51.5 9.6 93 167-262 14-129 (159)
189 1ihg_A Cyclophilin 40; ppiase 97.6 0.00015 5.1E-09 62.7 7.6 122 165-287 224-362 (370)
190 3mkq_A Coatomer beta'-subunit; 97.6 0.0042 1.4E-07 59.0 18.3 158 70-263 606-764 (814)
191 3rkv_A Putative peptidylprolyl 97.6 0.00048 1.6E-08 51.6 9.4 60 133-192 63-125 (162)
192 3rkv_A Putative peptidylprolyl 97.6 0.00059 2E-08 51.1 9.7 62 201-263 64-125 (162)
193 3n71_A Histone lysine methyltr 97.5 0.00013 4.6E-09 65.4 6.9 97 133-229 351-464 (490)
194 3q7a_A Farnesyltransferase alp 97.4 0.0041 1.4E-07 52.9 13.9 201 62-267 87-335 (349)
195 1dce_A Protein (RAB geranylger 97.4 0.0046 1.6E-07 56.5 15.0 174 74-253 39-244 (567)
196 2hr2_A Hypothetical protein; a 97.4 0.0016 5.4E-08 48.7 9.7 58 66-124 14-84 (159)
197 1klx_A Cysteine rich protein B 97.3 0.0019 6.7E-08 47.1 10.0 111 178-299 9-128 (138)
198 1na3_A Designed protein CTPR2; 97.3 0.0013 4.4E-08 43.5 7.7 79 64-145 10-89 (91)
199 2kat_A Uncharacterized protein 97.2 0.0014 4.9E-08 45.7 7.9 77 182-262 3-80 (115)
200 1na3_A Designed protein CTPR2; 97.2 0.003 1E-07 41.5 8.9 76 166-245 11-87 (91)
201 3mkq_B Coatomer subunit alpha; 97.2 0.046 1.6E-06 41.4 16.2 130 140-292 12-141 (177)
202 2kat_A Uncharacterized protein 97.1 0.0026 8.9E-08 44.4 8.4 75 116-192 4-81 (115)
203 3ma5_A Tetratricopeptide repea 97.1 0.0019 6.4E-08 44.1 7.2 61 164-227 7-68 (100)
204 3qww_A SET and MYND domain-con 97.0 0.0007 2.4E-08 59.7 5.6 81 212-292 310-408 (433)
205 3ma5_A Tetratricopeptide repea 97.0 0.0016 5.6E-08 44.4 6.0 62 62-124 6-68 (100)
206 1dce_A Protein (RAB geranylger 96.9 0.015 5.2E-07 53.1 13.5 167 112-284 44-244 (567)
207 1klx_A Cysteine rich protein B 96.9 0.015 5E-07 42.3 10.9 88 139-230 31-127 (138)
208 2uy1_A Cleavage stimulation fa 96.9 0.018 6.1E-07 51.7 13.4 183 63-262 213-411 (493)
209 3qwp_A SET and MYND domain-con 96.8 0.0017 5.9E-08 57.2 6.3 86 207-292 294-397 (429)
210 3dss_A Geranylgeranyl transfer 96.8 0.041 1.4E-06 46.5 14.3 185 109-303 41-271 (331)
211 3ly7_A Transcriptional activat 96.8 0.017 5.8E-07 49.3 11.7 64 163-229 276-339 (372)
212 3qwp_A SET and MYND domain-con 96.7 0.0088 3E-07 52.7 9.9 94 170-263 293-399 (429)
213 3qww_A SET and MYND domain-con 96.6 0.0078 2.7E-07 53.0 9.0 87 176-262 310-409 (433)
214 1zu2_A Mitochondrial import re 96.5 0.0034 1.2E-07 46.8 5.0 28 178-208 105-132 (158)
215 1zu2_A Mitochondrial import re 96.5 0.0042 1.4E-07 46.3 5.4 110 74-192 13-146 (158)
216 2kc7_A BFR218_protein; tetratr 96.3 0.005 1.7E-07 41.4 4.4 52 210-262 10-62 (99)
217 3mkq_A Coatomer beta'-subunit; 96.2 0.059 2E-06 51.1 13.3 97 67-186 633-729 (814)
218 2kc7_A BFR218_protein; tetratr 96.0 0.019 6.4E-07 38.5 6.5 54 70-124 7-62 (99)
219 3ly7_A Transcriptional activat 95.9 0.28 9.6E-06 41.8 14.3 71 197-269 274-346 (372)
220 1wy6_A Hypothetical protein ST 95.2 0.29 9.9E-06 35.2 10.0 61 237-299 93-156 (172)
221 3bee_A Putative YFRE protein; 94.8 0.28 9.6E-06 32.7 8.8 47 216-263 25-71 (93)
222 3bee_A Putative YFRE protein; 94.6 0.42 1.5E-05 31.8 9.3 62 131-192 4-71 (93)
223 2v5f_A Prolyl 4-hydroxylase su 94.1 0.3 1E-05 33.1 7.9 64 200-263 5-74 (104)
224 3mkq_B Coatomer subunit alpha; 94.0 1.1 3.8E-05 33.7 11.3 128 107-262 15-142 (177)
225 2v5f_A Prolyl 4-hydroxylase su 93.8 0.45 1.5E-05 32.2 8.4 63 167-229 8-75 (104)
226 1pc2_A Mitochondria fission pr 93.8 0.34 1.2E-05 35.6 8.0 80 181-263 15-99 (152)
227 4b4t_P 26S proteasome regulato 93.7 3.4 0.00012 36.2 16.6 185 77-262 30-245 (445)
228 1wy6_A Hypothetical protein ST 93.0 1.8 6.3E-05 31.1 13.3 63 167-231 94-156 (172)
229 3lvg_A Clathrin heavy chain 1; 92.9 0.085 2.9E-06 46.6 4.0 210 64-287 55-325 (624)
230 3u64_A Protein TP_0956; tetrat 92.8 0.32 1.1E-05 40.0 7.1 114 147-263 135-268 (301)
231 1pc2_A Mitochondria fission pr 92.8 0.44 1.5E-05 35.0 7.2 77 114-192 15-99 (152)
232 3lvg_A Clathrin heavy chain 1; 92.8 0.0052 1.8E-07 54.1 -3.6 144 133-288 54-221 (624)
233 3ltj_A Alpharep-4; protein eng 92.4 2.8 9.5E-05 31.8 16.8 110 132-250 58-167 (201)
234 4fhn_B Nucleoporin NUP120; pro 92.4 1.9 6.4E-05 42.9 13.5 145 138-285 817-990 (1139)
235 4h7y_A Dual specificity protei 91.8 2.2 7.6E-05 31.2 9.7 62 178-242 74-135 (161)
236 2uwj_G Type III export protein 91.8 1.9 6.6E-05 28.9 8.5 77 111-192 20-96 (115)
237 2p58_C Putative type III secre 91.7 2.1 7E-05 28.8 9.1 77 111-192 21-97 (116)
238 3u64_A Protein TP_0956; tetrat 91.5 1.2 4E-05 36.7 9.0 92 149-243 179-285 (301)
239 2p58_C Putative type III secre 91.4 2.2 7.6E-05 28.7 8.9 75 214-292 21-95 (116)
240 3ltm_A Alpha-REP4; protein eng 91.4 3.9 0.00013 31.3 17.2 142 95-250 31-172 (211)
241 2uwj_G Type III export protein 91.1 2.2 7.4E-05 28.7 8.2 75 214-292 20-94 (115)
242 3ltm_A Alpha-REP4; protein eng 90.5 4.8 0.00016 30.8 17.8 173 60-249 30-202 (211)
243 2ff4_A Probable regulatory pro 90.0 0.96 3.3E-05 39.0 7.8 67 69-136 177-248 (388)
244 4gns_B Protein CSD3, chitin bi 89.9 0.92 3.1E-05 42.6 7.9 48 245-292 347-397 (754)
245 4h7y_A Dual specificity protei 89.8 3.4 0.00012 30.2 9.1 98 162-262 11-121 (161)
246 1v54_E Cytochrome C oxidase po 89.8 2.6 8.9E-05 28.4 7.8 61 181-243 27-87 (109)
247 1v54_E Cytochrome C oxidase po 88.5 2.1 7.1E-05 28.9 6.7 66 209-274 18-87 (109)
248 3ffl_A Anaphase-promoting comp 88.5 5.5 0.00019 29.6 9.7 62 62-124 19-90 (167)
249 3ltj_A Alpharep-4; protein eng 87.7 7.4 0.00025 29.4 18.1 172 60-248 25-196 (201)
250 3lpz_A GET4 (YOR164C homolog); 87.3 12 0.00041 31.3 18.0 147 134-292 36-213 (336)
251 2ff4_A Probable regulatory pro 86.7 2.1 7.3E-05 36.8 7.8 55 206-261 177-231 (388)
252 2wpv_A GET4, UPF0363 protein Y 86.7 13 0.00043 30.9 16.8 167 113-292 13-214 (312)
253 2y69_E Cytochrome C oxidase su 85.8 5.3 0.00018 28.5 7.8 61 181-243 70-130 (152)
254 4fhn_B Nucleoporin NUP120; pro 85.6 30 0.001 34.3 17.7 86 167-254 902-990 (1139)
255 3txn_A 26S proteasome regulato 85.2 10 0.00035 32.6 11.1 161 65-227 21-208 (394)
256 4b4t_P 26S proteasome regulato 84.7 20 0.00067 31.4 14.0 179 111-292 30-244 (445)
257 1nzn_A CGI-135 protein, fissio 84.7 2.7 9.3E-05 29.7 6.1 64 198-262 33-101 (126)
258 3ffl_A Anaphase-promoting comp 84.5 11 0.00036 28.1 10.1 124 127-263 12-150 (167)
259 4gns_B Protein CSD3, chitin bi 84.1 28 0.00097 32.7 14.3 125 137-262 252-398 (754)
260 1k1a_A B-cell lymphoma 3-encod 84.1 9.3 0.00032 29.5 10.0 19 243-261 155-173 (241)
261 2y69_E Cytochrome C oxidase su 84.0 5 0.00017 28.7 7.0 65 210-274 62-130 (152)
262 2nsz_A Programmed cell death p 81.6 11 0.00039 26.5 8.5 63 135-198 9-76 (129)
263 4b4t_R RPN7, 26S proteasome re 81.1 13 0.00043 32.4 10.3 95 135-229 133-237 (429)
264 3txn_A 26S proteasome regulato 80.3 27 0.00094 29.9 13.4 161 99-260 21-206 (394)
265 1nzn_A CGI-135 protein, fissio 77.6 16 0.00054 25.7 8.2 19 173-191 83-101 (126)
266 1wdy_A 2-5A-dependent ribonucl 76.2 19 0.00066 28.3 9.6 113 67-187 6-125 (285)
267 3eu9_A Huntingtin-interacting 76.0 11 0.00038 28.9 7.8 204 72-292 15-233 (240)
268 2ion_A PDCD4, programmed cell 75.6 12 0.0004 27.4 7.1 63 135-198 11-78 (152)
269 1zbp_A Hypothetical protein VP 75.4 5.1 0.00017 32.4 5.5 114 171-292 4-126 (273)
270 3esl_A Checkpoint serine/threo 73.9 25 0.00085 27.0 8.7 48 216-263 95-143 (202)
271 1wdy_A 2-5A-dependent ribonucl 73.1 32 0.0011 27.0 11.1 215 68-303 41-281 (285)
272 3hra_A Ankyrin repeat family p 72.3 27 0.00092 25.9 9.0 155 71-234 10-172 (201)
273 4b4t_R RPN7, 26S proteasome re 71.7 11 0.00039 32.7 7.4 58 100-158 134-193 (429)
274 1y8m_A FIS1; mitochondria, unk 71.7 25 0.00087 25.3 8.0 66 197-262 36-104 (144)
275 3eiq_C Programmed cell death p 70.9 47 0.0016 28.0 11.9 26 66-92 57-82 (358)
276 2d2s_A Exocyst complex compone 69.0 23 0.00078 28.0 7.9 87 68-159 23-117 (235)
277 1ug3_A EIF4GI, eukaryotic prot 67.8 53 0.0018 27.4 10.6 56 137-192 15-74 (339)
278 4ady_A RPN2, 26S proteasome re 65.9 56 0.0019 31.7 11.1 148 140-292 497-655 (963)
279 3o48_A Mitochondria fission 1 65.6 19 0.00066 25.5 6.1 66 198-263 38-106 (134)
280 3ygs_P Procaspase 9; apoptosis 64.1 17 0.00058 24.1 5.4 66 221-288 25-90 (97)
281 2nsz_A Programmed cell death p 62.9 18 0.00063 25.4 5.7 67 167-235 10-78 (129)
282 2p1h_A APAF-1, apoptotic prote 62.6 29 0.001 22.6 6.4 63 219-285 24-86 (94)
283 1zbp_A Hypothetical protein VP 62.5 17 0.00059 29.3 6.0 50 74-124 8-58 (273)
284 2dzn_A Probable 26S proteasome 61.5 28 0.00097 26.4 7.3 16 246-261 148-163 (228)
285 3bqo_A Telomeric repeat-bindin 61.1 53 0.0018 25.1 9.7 44 149-192 94-145 (211)
286 4b4t_S RPN3, 26S proteasome re 60.9 78 0.0027 28.3 10.4 61 132-192 230-298 (523)
287 4a1g_A Mitotic checkpoint seri 58.1 51 0.0017 23.9 8.4 53 181-234 82-135 (152)
288 2rfa_A Transient receptor pote 58.0 34 0.0012 26.1 7.2 153 69-231 6-182 (232)
289 1oyz_A Hypothetical protein YI 57.6 69 0.0024 25.3 18.3 215 61-292 35-260 (280)
290 3eu9_A Huntingtin-interacting 56.9 31 0.0011 26.2 6.8 181 68-263 44-235 (240)
291 3esl_A Checkpoint serine/threo 56.7 64 0.0022 24.7 9.0 57 177-234 92-149 (202)
292 2ion_A PDCD4, programmed cell 55.9 17 0.00058 26.5 4.6 68 166-235 11-80 (152)
293 3b7b_A Euchromatic histone-lys 55.2 31 0.0011 26.4 6.5 207 69-292 14-233 (237)
294 3eiq_C Programmed cell death p 54.7 50 0.0017 27.9 7.9 61 135-196 219-284 (358)
295 4gq2_M Nucleoporin NUP120; bet 54.6 1.5E+02 0.005 28.8 12.2 127 139-280 816-950 (950)
296 2zu6_B Programmed cell death p 53.5 93 0.0032 25.6 12.1 26 66-92 6-31 (307)
297 2wpv_A GET4, UPF0363 protein Y 53.0 96 0.0033 25.6 14.1 122 141-289 21-157 (312)
298 2zu6_B Programmed cell death p 52.9 51 0.0017 27.1 7.5 63 135-198 168-235 (307)
299 4ets_A Ferric uptake regulatio 52.5 50 0.0017 24.1 6.8 71 180-251 13-85 (162)
300 3ljn_A Hypothetical protein; a 52.1 29 0.00099 28.8 6.3 84 68-158 22-106 (364)
301 2d2s_A Exocyst complex compone 51.0 62 0.0021 25.4 7.5 20 140-159 25-44 (235)
302 3kea_A K1L; tropism, ANK repea 48.4 83 0.0028 25.0 8.3 207 75-304 8-224 (285)
303 4g8k_A 2-5A-dependent ribonucl 48.4 1.1E+02 0.0037 24.9 9.3 102 119-234 221-328 (337)
304 1k1a_A B-cell lymphoma 3-encod 48.1 81 0.0028 23.9 8.0 176 69-261 12-206 (241)
305 3aji_A 26S proteasome non-ATPa 46.3 39 0.0013 25.6 5.8 175 69-261 9-195 (231)
306 2fe3_A Peroxide operon regulat 45.9 60 0.0021 23.1 6.3 44 207-250 28-71 (145)
307 3aji_A 26S proteasome non-ATPa 45.9 84 0.0029 23.7 7.7 180 104-302 10-199 (231)
308 2r9g_A AAA ATPase, central reg 45.7 95 0.0033 23.7 7.3 63 170-234 17-87 (204)
309 3ygs_P Procaspase 9; apoptosis 45.5 35 0.0012 22.5 4.5 39 147-185 51-89 (97)
310 4ady_A RPN2, 26S proteasome re 45.1 2E+02 0.0069 27.9 11.1 189 72-267 462-662 (963)
311 2wvi_A Mitotic checkpoint seri 44.6 52 0.0018 24.3 5.7 54 181-235 77-131 (164)
312 3l6a_A Eukaryotic translation 44.1 71 0.0024 27.0 7.3 26 137-162 16-41 (364)
313 2qx5_A Nucleoporin NIC96; mRNA 43.9 2E+02 0.0068 26.6 13.0 82 71-163 302-386 (661)
314 4aez_C MAD3, mitotic spindle c 43.6 43 0.0015 26.1 5.3 52 181-233 131-183 (223)
315 3bqo_A Telomeric repeat-bindin 43.1 1.1E+02 0.0037 23.4 8.3 42 251-292 94-143 (211)
316 1y8m_A FIS1; mitochondria, unk 41.8 95 0.0032 22.3 7.0 22 208-229 85-106 (144)
317 2ijq_A Hypothetical protein; s 41.8 97 0.0033 22.7 6.7 51 212-262 44-102 (161)
318 1bd8_A P19INK4D CDK4/6 inhibit 41.8 86 0.0029 21.8 7.3 137 139-290 5-154 (156)
319 3jxi_A Vanilloid receptor-rela 41.0 19 0.00066 28.1 3.2 88 70-160 9-117 (260)
320 1n11_A Ankyrin; clathrin, BAND 39.2 73 0.0025 27.1 6.9 204 68-289 49-265 (437)
321 1wgl_A TOLL-interacting protei 39.2 48 0.0017 19.6 3.9 23 278-302 35-57 (59)
322 1jog_A Hypothetical protein HI 37.9 60 0.0021 23.3 5.1 59 180-240 54-115 (146)
323 1bd8_A P19INK4D CDK4/6 inhibit 37.4 39 0.0013 23.7 4.2 20 69-89 5-24 (156)
324 2xig_A Ferric uptake regulatio 36.5 1E+02 0.0034 22.1 6.2 57 194-251 21-77 (150)
325 3qye_A TBC1 domain family memb 35.7 1.8E+02 0.0063 23.8 10.6 95 185-280 209-308 (331)
326 3o48_A Mitochondria fission 1 34.1 78 0.0027 22.4 5.0 47 112-159 58-104 (134)
327 4ets_A Ferric uptake regulatio 34.0 78 0.0027 23.1 5.3 25 168-192 36-60 (162)
328 3mwm_A ZUR, putative metal upt 33.9 89 0.0031 22.0 5.5 48 204-251 17-64 (139)
329 1s6c_A KV4 potassium channel-i 33.7 1.3E+02 0.0045 21.6 7.4 40 252-291 140-181 (183)
330 1qsa_A Protein (soluble lytic 33.7 2.8E+02 0.0095 25.3 18.9 226 70-305 222-487 (618)
331 3bge_A Predicted ATPase; struc 33.6 1.1E+02 0.0037 23.3 6.0 61 170-231 10-78 (201)
332 2o03_A Probable zinc uptake re 33.1 93 0.0032 21.6 5.4 47 205-251 15-61 (131)
333 2rfa_A Transient receptor pote 31.9 1.6E+02 0.0055 22.0 8.2 54 245-301 128-184 (232)
334 3kae_A CDC27, possible protein 31.7 1.5E+02 0.0051 22.2 6.2 90 146-259 46-138 (242)
335 4a1g_A Mitotic checkpoint seri 31.6 1.5E+02 0.005 21.5 8.9 55 219-273 84-139 (152)
336 2fu4_A Ferric uptake regulatio 31.4 94 0.0032 19.2 6.9 60 190-251 8-68 (83)
337 3f3f_C Nucleoporin NUP85; stru 31.3 89 0.0031 28.2 6.0 23 138-160 521-543 (570)
338 3l6a_A Eukaryotic translation 31.2 91 0.0031 26.3 5.9 75 166-245 14-93 (364)
339 3eyy_A Putative iron uptake re 31.1 1.4E+02 0.0048 21.1 6.2 59 190-251 10-68 (145)
340 3hra_A Ankyrin repeat family p 30.9 1.5E+02 0.0051 21.5 6.8 140 70-217 43-192 (201)
341 2b7e_A PRE-mRNA processing pro 30.6 49 0.0017 19.7 2.9 34 180-214 2-36 (59)
342 2qfz_A TBC1 domain family memb 29.8 1.2E+02 0.0043 25.1 6.6 78 186-264 231-315 (345)
343 3eyy_A Putative iron uptake re 29.1 1.1E+02 0.0038 21.7 5.4 13 180-192 33-45 (145)
344 2o03_A Probable zinc uptake re 28.9 76 0.0026 22.0 4.4 47 169-216 15-61 (131)
345 2p1h_A APAF-1, apoptotic prote 28.7 1.2E+02 0.0041 19.5 6.6 38 146-183 49-86 (94)
346 2qq8_A TBC1 domain family memb 28.2 1E+02 0.0036 25.5 5.8 78 185-263 214-294 (334)
347 3bu8_A Telomeric repeat-bindin 28.2 1.7E+02 0.0058 22.7 6.2 48 113-160 88-141 (235)
348 3ph0_C ASCG; type III secretio 28.0 96 0.0033 18.2 3.9 40 215-255 21-60 (61)
349 3mwm_A ZUR, putative metal upt 28.0 69 0.0024 22.6 4.0 46 169-215 18-63 (139)
350 2xig_A Ferric uptake regulatio 27.8 1.3E+02 0.0045 21.4 5.6 55 162-217 24-78 (150)
351 2rg8_A Programmed cell death p 27.6 45 0.0015 24.6 3.0 28 136-163 13-40 (165)
352 4b4t_S RPN3, 26S proteasome re 27.6 3.3E+02 0.011 24.3 9.3 65 165-229 232-299 (523)
353 2fe3_A Peroxide operon regulat 27.5 1.6E+02 0.0056 20.7 7.4 66 150-216 7-72 (145)
354 1mzb_A Ferric uptake regulatio 27.5 1.3E+02 0.0043 21.0 5.3 60 190-251 9-69 (136)
355 1wwp_A Hypothetical protein TT 27.3 1.2E+02 0.0042 20.6 5.1 39 180-220 34-73 (119)
356 3f3f_C Nucleoporin NUP85; stru 27.0 51 0.0017 29.7 3.7 85 65-153 481-569 (570)
357 1n11_A Ankyrin; clathrin, BAND 26.9 2.6E+02 0.0088 23.5 8.3 202 69-286 83-295 (437)
358 4aez_C MAD3, mitotic spindle c 26.7 2.3E+02 0.0077 22.0 8.2 59 217-275 131-190 (223)
359 2etb_A Transient receptor pote 26.3 42 0.0014 26.1 2.9 117 101-224 3-157 (256)
360 2w57_A Ferric uptake regulatio 26.3 1.8E+02 0.0061 20.7 7.2 62 189-252 7-69 (150)
361 1ihb_A P18-INK4C(INK6), cyclin 26.1 1.7E+02 0.0057 20.3 6.4 85 66-159 5-93 (162)
362 1oai_A Nuclear RNA export fact 25.9 41 0.0014 19.9 2.1 24 177-200 33-56 (59)
363 2ijq_A Hypothetical protein; s 25.5 2E+02 0.0068 21.0 7.2 14 111-124 46-59 (161)
364 3twr_A Tankyrase-2; ankyrin re 24.9 1.7E+02 0.0059 20.4 5.9 113 139-261 11-131 (165)
365 1mzb_A Ferric uptake regulatio 24.3 1.8E+02 0.0062 20.2 6.3 48 167-215 20-68 (136)
366 3ctd_A Putative ATPase, AAA fa 24.3 2.4E+02 0.0084 21.6 7.8 65 168-233 36-108 (213)
367 3ljn_A Hypothetical protein; a 24.2 1.9E+02 0.0064 23.7 6.8 63 66-133 54-116 (364)
368 2wvi_A Mitotic checkpoint seri 24.1 2.1E+02 0.0073 20.9 8.9 46 152-198 79-129 (164)
369 3bu8_A Telomeric repeat-bindin 23.9 2.5E+02 0.0087 21.7 6.5 22 241-262 120-141 (235)
370 2yru_A Steroid receptor RNA ac 23.8 69 0.0024 22.1 3.2 41 187-228 49-89 (118)
371 1s6c_A KV4 potassium channel-i 23.8 2E+02 0.0069 20.5 12.6 21 201-221 157-177 (183)
372 2pnn_A Transient receptor pote 23.7 1.1E+02 0.0036 23.9 4.9 191 67-260 14-255 (273)
373 2dzn_A Probable 26S proteasome 23.5 95 0.0033 23.2 4.5 171 70-258 6-194 (228)
374 3b7b_A Euchromatic histone-lys 22.8 2.2E+02 0.0074 21.3 6.5 177 104-302 15-204 (237)
375 3crd_A Raidd; caspase recruitm 22.8 1.7E+02 0.0057 19.2 4.9 64 222-292 26-89 (100)
376 4g8k_A 2-5A-dependent ribonucl 22.1 3.1E+02 0.011 22.0 12.3 14 246-259 247-260 (337)
377 2yru_A Steroid receptor RNA ac 21.8 1.7E+02 0.0059 20.1 4.9 41 222-262 48-88 (118)
378 2w57_A Ferric uptake regulatio 21.7 1.7E+02 0.0057 20.9 5.1 14 179-192 32-45 (150)
379 2f6m_A Suppressor protein STP2 21.6 1.4E+02 0.0049 18.0 4.4 45 203-248 5-49 (65)
380 3hzj_A Rabgap1L, RAB GTPase-ac 21.6 2.2E+02 0.0074 23.1 6.5 73 185-259 175-251 (310)
381 3cqc_A Nuclear pore complex pr 21.3 73 0.0025 25.6 3.3 29 134-162 35-63 (270)
382 3kae_A CDC27, possible protein 21.0 2.7E+02 0.0092 20.9 7.6 133 142-292 71-234 (242)
383 3d9h_A CDNA FLJ77766, highly s 21.0 1.5E+02 0.005 23.5 5.2 223 56-290 5-243 (285)
384 1oyz_A Hypothetical protein YI 21.0 3E+02 0.01 21.4 19.5 185 95-292 35-232 (280)
385 3t8k_A Uncharacterized protein 20.9 2.5E+02 0.0085 20.5 8.3 91 143-235 13-109 (186)
386 3twr_A Tankyrase-2; ankyrin re 20.7 2.2E+02 0.0075 19.8 7.1 116 104-233 12-134 (165)
387 3jxi_A Vanilloid receptor-rela 20.7 1.4E+02 0.0046 23.0 4.9 90 173-264 11-119 (260)
388 2rg8_A Programmed cell death p 20.7 92 0.0031 22.9 3.5 27 166-192 12-38 (165)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.6e-36 Score=271.97 Aligned_cols=198 Identities=9% Similarity=0.033 Sum_probs=156.6
Q ss_pred HHHHHHHHhhcc--CCCC-hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC---------
Q 037178 81 NKALSLLQENLH--NADL-KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF--------- 148 (311)
Q Consensus 81 ~~a~~~~~~m~~--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~--------- 148 (311)
..+..+.+++++ .... ...++.+|.+|++.|++++|.++|++|. +.|+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 455566677766 3333 3468889999999999999999999999 89999999999999999998765
Q ss_pred hhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHH
Q 037178 149 PLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHG 224 (311)
Q Consensus 149 ~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 224 (311)
+++|.++|++|. .||.++||+||.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 567888888886 46888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCC
Q 037178 225 MAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNLVSWNSIICGFSENG 280 (311)
Q Consensus 225 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~y~~li~~~~~~g 280 (311)
+|.+.|+.||..+|++||++|++.|++++|.++|++|. +|+..||++++..|+..+
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888888888888888888888888888888888886 378888888888887644
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.8e-34 Score=257.07 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=174.7
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCC---------hhHHHHHHHHHHhhcCCCch
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKD---------IEIGKRVHELVSASTQFSND 132 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~g~~~~ 132 (311)
..++.+|.+|++.| ++++|+++|++|.+ +.||..||+++|.+|++.+. +++|.++|++|. +.|+.||
T Consensus 27 ~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCC
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCC
Confidence 45888999999999 99999999999998 99999999999999987654 688999999999 9999999
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK 208 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~ 208 (311)
..+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+ .|+.||..||++||+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Confidence 9999999999999999999999999997 47999999999999999999999999999999 999999999999999
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 209 ACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
+|++.|++++|.+++++|.+.|..|+..||++++..|+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.1e-23 Score=192.87 Aligned_cols=235 Identities=7% Similarity=-0.104 Sum_probs=179.3
Q ss_pred hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch
Q 037178 53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND 132 (311)
Q Consensus 53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~ 132 (311)
..+..++.+++..|+.++..+.+.| ++++|+.+|++|....|+..++..++.+|.+.|++++|..+|+.+. .. +++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~ 149 (597)
T 2xpi_A 74 NAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED-LY--NRS 149 (597)
T ss_dssp --------CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-GG--GTC
T ss_pred CccccchHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-cc--ccc
Confidence 4456677788899999999999999 9999999999998866788899999999999999999999999886 33 678
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCCC-------------------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKTR-------------------NLFQWNALVSGFTKNELYTDVLSIFVELSSD 193 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-------------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (311)
..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|++|.+
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 228 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM- 228 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 889999999999999999999999965433 478899999999999999999999988865
Q ss_pred CCC----------------------------------------------------------------------CCCcchH
Q 037178 194 TEL----------------------------------------------------------------------KPDNFTF 203 (311)
Q Consensus 194 ~~~----------------------------------------------------------------------~p~~~t~ 203 (311)
.+. .++..++
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence 221 1456677
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCC---------------------------------CCcHHHHHHHHHHHHhcCC
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKMGL---------------------------------IGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------------~~~~~~~~~li~~~~~~g~ 250 (311)
+.++.++.+.|++++|.++|+++.+.+. +.+..+|+.++.+|.+.|+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc
Confidence 7778888888888888888887775541 2245566666666666666
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 251 VEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 251 ~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++|
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666666542 34556777777777777777777777776
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=4.2e-23 Score=190.87 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=178.5
Q ss_pred hhhcCCC--CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178 54 AKTNNAS--TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFS 130 (311)
Q Consensus 54 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 130 (311)
.+.++.. ++..+|+.++.+|.+.| ++++|+++|+++.+ .+.+..++..++.++.+.|+.++|..+++.+. +.. +
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 370 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-DRH-P 370 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhC-c
Confidence 3444443 78888999999999999 99999999999887 55577778888888888888888888888887 443 4
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHH
Q 037178 131 NDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVI 207 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li 207 (311)
.+..+++.+..+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+ .+ ..+..+|..++
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR-LF-QGTHLPYLFLG 448 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT-TTCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchHHHHHHH
Confidence 567778888888888888888888888764 34677888888888888888888888888765 22 23567777888
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC--hhhHHHHHHHHH
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--------RN--LVSWNSIICGFS 277 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~--~~~y~~li~~~~ 277 (311)
.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+ |+ ..+|+.++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 88888888888888888877664 44677788888888888888888888877642 44 567777788888
Q ss_pred hCCCcchHHHHHHhh
Q 037178 278 ENGFSCESFDLLIKM 292 (311)
Q Consensus 278 ~~g~~~~a~~l~~~m 292 (311)
+.|++++|.++++++
T Consensus 528 ~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 528 KLKMYDAAIDALNQG 542 (597)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 888888888888777
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=8.7e-23 Score=191.21 Aligned_cols=152 Identities=11% Similarity=0.157 Sum_probs=128.4
Q ss_pred CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC-------CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc
Q 037178 128 QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK-------TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN 200 (311)
Q Consensus 128 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~-------~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 200 (311)
....-..+||+||++||+.|++++|.++|++|. .||++|||+||++||+.|++++|.++|++|.+ .|+.||.
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDv 200 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDL 200 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcH
Confidence 344556799999999999999999999998764 58999999999999999999999999999999 9999999
Q ss_pred chHHHHHHHHhccCCh-hhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHH
Q 037178 201 FTFPCVIKACGGIADV-GFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNLVSWNSIIC 274 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~y~~li~ 274 (311)
+||+++|+++|+.|+. ++|.+++++|.+.|+.||..+|++++.++.+.+-++.+.++..++.- +-+.+.+.|.+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 78999999999999999999999999988887666666555444432 11334445556
Q ss_pred HHHhCC
Q 037178 275 GFSENG 280 (311)
Q Consensus 275 ~~~~~g 280 (311)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=4.2e-22 Score=186.64 Aligned_cols=132 Identities=11% Similarity=0.000 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHhCCChhhHHHHHHHhhh--cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178 164 LFQWNALVSGFTKNELYTDVLSIFVELSS--DTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNAL 241 (311)
Q Consensus 164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 241 (311)
..+||++|++||+.|++++|.++|++|.+ ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 36899999999999999999999988753 1589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHhhCCC----CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178 242 IAMYGKCAFV-EEMVKLFEVMPE----RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 242 i~~~~~~g~~-~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
|+++|+.|+. ++|.++|++|.+ ||.++|+.++.++.+. .+++.++++ ..+++|+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv---~P~f~p~ 265 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV---KPTFSLP 265 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG---CCCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh---CcccCCC
Confidence 9999999985 789999999984 9999999999877765 466677777 5577776
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.81 E-value=2.4e-17 Score=144.40 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=171.9
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.+..+-..+...| ++++|.+.|+++.. .+.+..+|..+...+...|++++|...|+++. +.+ +.+...+..+...+
T Consensus 137 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 137 VRSDLGNLLKALG-RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-TLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHTTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCcHHHHHHHHHHH
Confidence 3444555555556 66666666666665 44445566666666666666666666666666 433 23445566666667
Q ss_pred HhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhH
Q 037178 144 SLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a 219 (311)
...|++++|...|++.. ..+..+|..+..++.+.|++++|.+.|+++.+ ..|+ ..+|..+..++.+.|++++|
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777766543 23577888999999999999999999999877 3454 56788999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhcc
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCE 296 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~ 296 (311)
.+.++++.+.. +.+..+++.+...|.+.|++++|.+.++++.+ | +..+|..+...|.+.|++++|.+.++++ .+
T Consensus 291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--~~ 367 (388)
T 1w3b_A 291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA--IR 367 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH--HT
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--Hh
Confidence 99999998875 66888999999999999999999999999886 3 4578999999999999999999999999 43
Q ss_pred CCCCCCc
Q 037178 297 EGFIPDV 303 (311)
Q Consensus 297 ~g~~P~~ 303 (311)
+.|+.
T Consensus 368 --~~p~~ 372 (388)
T 1w3b_A 368 --ISPTF 372 (388)
T ss_dssp --TCTTC
T ss_pred --hCCCC
Confidence 45653
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.78 E-value=2.8e-17 Score=143.99 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=139.1
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+..+|..+..++.+.| ++++|+..|+++.+ .+.+..+|..+..++...|++++|...++.+. +.. +.+...+..+.
T Consensus 66 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYN-PDLYCVRSDLG 142 (388)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHC-TTCTHHHHHHH
T ss_pred chHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHHH
Confidence 4455666666666666 66666666666665 33334455556666666666666666655555 332 22233344444
Q ss_pred HHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHH----------------------------------HHhCCChhhH
Q 037178 141 TMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSG----------------------------------FTKNELYTDV 183 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~----------------------------------~~~~g~~~~a 183 (311)
..|...|++++|.+.|+++. .| +..+|+.+... +...|++++|
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555443 12 33444444444 4444555555
Q ss_pred HHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 184 LSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 184 ~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
...|++... ..|+ ..++..+..++.+.|++++|.+.++++.+.+ +.+..+|..+...|.+.|++++|.+.|+++.
T Consensus 223 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 223 VAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544433 2343 4567777777788888888888888777764 3456778888888888888888888888776
Q ss_pred C---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 263 E---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 263 ~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+ .+..+|+.+...+.+.|++++|.+.++++
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 45677888888888888888888888888
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.76 E-value=5.2e-17 Score=144.74 Aligned_cols=232 Identities=9% Similarity=-0.082 Sum_probs=197.6
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...|..+...+.+.| ++++|+.+|+++.. .+.+..+|..+..++...|++++|...++.+. +.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI-QLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCcHHHHHHH
Confidence 35567899999999999 99999999999998 77788999999999999999999999999998 655 4567889999
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--C-Ch---HHHHHHH------------HHHHhCCChhhHHHHHHHhhhcCCCCCCcc
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT--R-NL---FQWNALV------------SGFTKNELYTDVLSIFVELSSDTELKPDNF 201 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~--~-~~---~~y~~li------------~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 201 (311)
..+|.+.|++++|.+.|+++.+ | +. ..|..++ ..+.+.|++++|...|+++.. .. ..+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE-VC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCChH
Confidence 9999999999999999999864 3 33 5666654 448999999999999999976 21 23567
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHH------
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSI------ 272 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~l------ 272 (311)
++..+..++.+.|++++|.++++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ | +...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 89999999999999999999999998875 56789999999999999999999999999874 4 33455554
Q ss_pred ------HHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178 273 ------ICGFSENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 273 ------i~~~~~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
...|.+.|++++|.++|+++ .+ +.|+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~--l~--~~p~ 289 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESV--MK--TEPS 289 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH--HH--HCCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH--Hh--cCCc
Confidence 88999999999999999999 44 3455
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=7.4e-17 Score=140.02 Aligned_cols=232 Identities=12% Similarity=-0.005 Sum_probs=193.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178 58 NASTQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN 136 (311)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 136 (311)
.+..+...|..+...+.+.| ++++|...|+++.. .+.+..+|..+...+...|++++|...|+++. +.. +.+..++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~ 136 (365)
T 4eqf_A 60 NPFKDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL-ELQ-PNNLKAL 136 (365)
T ss_dssp CTTTTCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHH
T ss_pred CcccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHH
Confidence 34456677999999999999 99999999999999 76778899999999999999999999999998 554 4567889
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC--CC-----------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT--RN-----------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~--~~-----------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
..+..+|.+.|++++|...|+++.+ |+ ...+..+...+.+.|++++|...|+++.+...-.++..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 9999999999999999999999763 21 2334556889999999999999999998722222256789
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCC
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENG 280 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g 280 (311)
..+...+...|++++|.+.+++..+.. +.+..+|..+...|.+.|++++|.+.|++..+ | +..+|..+...|.+.|
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 999999999999999999999999875 55788999999999999999999999999874 4 5778999999999999
Q ss_pred CcchHHHHHHhhh
Q 037178 281 FSCESFDLLIKMM 293 (311)
Q Consensus 281 ~~~~a~~l~~~m~ 293 (311)
++++|.+.++++.
T Consensus 296 ~~~~A~~~~~~al 308 (365)
T 4eqf_A 296 AYREAVSNFLTAL 308 (365)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999983
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.74 E-value=3.5e-16 Score=139.39 Aligned_cols=229 Identities=12% Similarity=-0.014 Sum_probs=152.8
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC-h---hhHHHHH------------HhcccCCChhHHHHHHHHHHhh
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLHNADL-K---EATGVLL------------QACGHEKDIEIGKRVHELVSAS 126 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~-~---~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~ 126 (311)
...|..+...+.+.| ++++|...|+++....|+ . ..+..+. ..+...|++++|...++.+. +
T Consensus 94 ~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~ 171 (450)
T 2y4t_A 94 TAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL-E 171 (450)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H
Confidence 344555555555555 555555555555552222 2 3333332 22445555555555555555 3
Q ss_pred cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch-
Q 037178 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT- 202 (311)
Q Consensus 127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t- 202 (311)
.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|...|+++.. ..|+...
T Consensus 172 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~ 247 (450)
T 2y4t_A 172 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRC 247 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHH
T ss_pred hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHH
Confidence 32 3345566667777777777777777777764 24667788888888888888888888888765 3454433
Q ss_pred HHHH------------HHHHhccCChhhHHHHHHHHHHhCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178 203 FPCV------------IKACGGIADVGFGSGVHGMAAKMGLIGD-----VFVSNALIAMYGKCAFVEEMVKLFEVMPE-- 263 (311)
Q Consensus 203 ~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 263 (311)
+..+ ...+.+.|++++|...++.+.+.. |+ ..+|..+...|.+.|++++|...++++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333 677788888888888888887754 33 44778888888888888888888888763
Q ss_pred C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178 264 R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 264 ~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
| +..+|..+..+|...|++++|.+.++++ .+ +.|+.
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~--~~p~~ 362 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETA--QE--HNEND 362 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HT--TSSSC
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHH--HH--hCcch
Confidence 3 5678888888888999999999998888 43 45553
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=2.4e-15 Score=130.27 Aligned_cols=222 Identities=12% Similarity=0.016 Sum_probs=138.8
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+...|..+...+.+.| ++++|+..|+++.+ .+.+..++..+...+...|++++|...++.+. +.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~~~~~~~~~l~ 139 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL-ELK-PDNQTALMALA 139 (368)
T ss_dssp TCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-hcC-CCCHHHHHHHH
Confidence 4667788888888888 88888888888887 55567778888888888888888888888887 544 44667778888
Q ss_pred HHHHhcCChhHHHHHHHhcCC--C----------------------------------------------------ChHH
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT--R----------------------------------------------------NLFQ 166 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~--~----------------------------------------------------~~~~ 166 (311)
..|...|++++|.+.|+++.+ | +..+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 888888888888888876531 1 2344
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY 245 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 245 (311)
|..+...|.+.|++++|...|++... ..| +..++..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 55555555555555555555555543 122 23445555555555555555555555555443 23445555555555
Q ss_pred HhcCCHHHHHHHHhhCCC--C-C-----------hhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 246 GKCAFVEEMVKLFEVMPE--R-N-----------LVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~--~-~-----------~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
.+.|++++|...|++..+ | + ..+|..+..+|...|+.++|..+++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 555555555555554442 1 1 3455555555555555555555544
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=3.1e-15 Score=126.15 Aligned_cols=218 Identities=9% Similarity=-0.049 Sum_probs=183.1
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc-hhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN-DFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~ll~~~ 143 (311)
..-.+.++|...| +++.|+..++.. .+|+..++..+...+...++.++|.+.++++. ..+..| +...+..+...|
T Consensus 36 ~~~~l~r~yi~~g-~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll-~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQR-KYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH-HSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH-hcccCCCCHHHHHHHHHHH
Confidence 4456788999999 999999866543 45677889999999999999999999999998 666444 556677777999
Q ss_pred HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH---HHHHHHHhccCChhhHH
Q 037178 144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF---PCVIKACGGIADVGFGS 220 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~---~~li~~~~~~g~~~~a~ 220 (311)
.+.|++++|.+.|++ ..+...+..++..+.+.|++++|.+.|+++.+ . .|+.... ...+..+...|++++|.
T Consensus 112 ~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-~--~p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD-Q--DEDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-h--CcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 999999999999999 56888999999999999999999999999987 3 4664322 12334444569999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch-HHHHHHhh
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE-SFDLLIKM 292 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~-a~~l~~~m 292 (311)
.+++++.+.. +.+..+++.+..+|.+.|++++|...|++..+ | +..++..++..+...|+.++ +.++++++
T Consensus 187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999884 67899999999999999999999999999874 4 66789999999999999976 57888888
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.5e-15 Score=125.75 Aligned_cols=233 Identities=11% Similarity=-0.100 Sum_probs=199.0
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
.+...+..++..+.+.| ++++|..+++++.+ .+.+...+..+...+...| ++++|...++.+. +.. +.+...+..
T Consensus 54 ~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~ 130 (330)
T 3hym_B 54 FHASCLPVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLE-KTYGPAWIA 130 (330)
T ss_dssp TCTTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH-TTC-TTCTHHHHH
T ss_pred CChhhHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhC-CccHHHHHH
Confidence 35566778888999999 99999999999998 6667888999999999999 9999999999998 544 445778888
Q ss_pred HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA 214 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g 214 (311)
+...|...|++++|...|++.. ..+...+..+...|...|++++|...|++..+ ..| +...+..+...+...|
T Consensus 131 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcc
Confidence 9999999999999999999875 23567788899999999999999999999876 334 4578889999999999
Q ss_pred ChhhHHHHHHHHHHhC--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcc
Q 037178 215 DVGFGSGVHGMAAKMG--------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSC 283 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~ 283 (311)
++++|...+++..+.. .+.+..++..+...|.+.|++++|.+.+++..+ .+..+|..+...|.+.|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 9999999999988752 133467999999999999999999999998874 46678999999999999999
Q ss_pred hHHHHHHhhhhccCCCCCCc
Q 037178 284 ESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 284 ~a~~l~~~m~~~~~g~~P~~ 303 (311)
+|.+.+++. .+ +.|+.
T Consensus 288 ~A~~~~~~a--l~--~~p~~ 303 (330)
T 3hym_B 288 NAVDYFHTA--LG--LRRDD 303 (330)
T ss_dssp HHHHHHHTT--TT--TCSCC
T ss_pred HHHHHHHHH--Hc--cCCCc
Confidence 999999999 43 45643
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.2e-15 Score=125.91 Aligned_cols=225 Identities=10% Similarity=-0.023 Sum_probs=196.5
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...+..+...+...| ++++|+++|+++.. .+.+...+..++..+...|++++|..+++++. +.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV-DLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhC-cCCHHHHHHH
Confidence 45567788888999999 99999999999998 66677788888899999999999999999998 544 4467788889
Q ss_pred HHHHHhcC-ChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178 140 ITMYSLCG-FPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA 214 (311)
Q Consensus 140 l~~~~~~g-~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g 214 (311)
...+...| ++++|...|++..+ .+...|..+...+...|++++|...|++..+ ..| +...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ---LMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHh
Confidence 99999999 99999999998653 3678899999999999999999999999876 234 3567778999999999
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC------------CChhhHHHHHHHHHhCCCc
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE------------RNLVSWNSIICGFSENGFS 282 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~y~~li~~~~~~g~~ 282 (311)
++++|.+.++...+.. +.+..++..+...|.+.|++++|...+++..+ .+..+|..+...|...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998875 55789999999999999999999999988763 2356899999999999999
Q ss_pred chHHHHHHhh
Q 037178 283 CESFDLLIKM 292 (311)
Q Consensus 283 ~~a~~l~~~m 292 (311)
++|.+.+++.
T Consensus 253 ~~A~~~~~~a 262 (330)
T 3hym_B 253 AEALDYHRQA 262 (330)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=6.4e-17 Score=141.14 Aligned_cols=210 Identities=9% Similarity=0.004 Sum_probs=96.8
Q ss_pred hhhhcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch
Q 037178 53 SAKTNNASTQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND 132 (311)
Q Consensus 53 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~ 132 (311)
..+++.+.| .+|..+..++.+.| ++++|++.|.+. +|..+|..+++++...|++++|..+++..+ +. .++
T Consensus 24 ~fae~~~~~--~vWs~La~A~l~~g-~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar-k~--~~~ 93 (449)
T 1b89_A 24 EFAERCNEP--AVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCh--HHHHHHHHHHHHcC-CHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-Hh--Ccc
Confidence 344555555 48999999999999 999999999763 578899999999999999999999888777 43 456
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+. .|..+..++.+
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~~L~~ 160 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVH 160 (449)
T ss_dssp ---------------CHHHHTTTTT---CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHHHHHH
Confidence 7889999999999999999998886 4788899999999999999999999999873 69999999999
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.|++++|.+.+..+ .+..+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++..
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999987 378999999999999999999988888765 45444557999999999999999999887
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=3.2e-15 Score=127.01 Aligned_cols=226 Identities=8% Similarity=-0.041 Sum_probs=190.6
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...|..+...+...| ++++|..+|+++.. .+.+...+..+...+...|++++|...++++. +.. +.+..++..+
T Consensus 19 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLA-NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLD-PKDIAVHAAL 95 (327)
T ss_dssp GGSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-cCCHHHHHHH
Confidence 35567888889999999 99999999999998 66678889999999999999999999999998 554 4567788889
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHH--------------HH-HHHhCCChhhHHHHHHHhhhcCCCCCCcc
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNAL--------------VS-GFTKNELYTDVLSIFVELSSDTELKPDNF 201 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 201 (311)
...|...|++++|.+.|++..+ | +...+..+ .. .+...|++++|...++++.+ .. ..+..
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~ 173 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-MN-PNDAQ 173 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH-HS-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh-hC-CCCHH
Confidence 9999999999999999998753 2 33333333 22 37788999999999999876 32 22567
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSE 278 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~ 278 (311)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+..+|..+...|..
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999998875 55788999999999999999999999999864 456789999999999
Q ss_pred CCCcchHHHHHHhh
Q 037178 279 NGFSCESFDLLIKM 292 (311)
Q Consensus 279 ~g~~~~a~~l~~~m 292 (311)
.|++++|.+.+++.
T Consensus 253 ~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 253 MSQYDLAAKQLVRA 266 (327)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 99999999999998
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1.4e-15 Score=131.98 Aligned_cols=225 Identities=10% Similarity=-0.058 Sum_probs=187.0
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch------
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND------ 132 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~------ 132 (311)
..+..+|..+...+.+.| ++++|+..|+++.. .+.+..++..+...+...|++++|...++++. +.. |+
T Consensus 96 p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~ 171 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENE-NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQN--PKYKYLVK 171 (365)
T ss_dssp TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--HHHHCC--
T ss_pred cCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH-HhC--ccchHHHh
Confidence 346778999999999999 99999999999998 66678899999999999999999999999998 543 22
Q ss_pred -----hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-Ccc
Q 037178 133 -----FIINTRLITMYSLCGFPLDSRRVFDSLKT--R---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNF 201 (311)
Q Consensus 133 -----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 201 (311)
...+..+...|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|.+.|++..+ ..| +..
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 248 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT---VRPEDYS 248 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHH
Confidence 22334458899999999999999998762 3 678999999999999999999999999876 234 467
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-------------NL 266 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-------------~~ 266 (311)
+|..+..++.+.|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.|++..+ | +.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 89999999999999999999999998875 55689999999999999999999999998874 2 26
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 267 VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 267 ~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+|..+..++...|+.+.+.++.++-
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 78999999999999999988877653
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=6.2e-15 Score=125.28 Aligned_cols=225 Identities=8% Similarity=-0.062 Sum_probs=189.7
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+...|..+...+.+.| ++++|...|+++.. .+.+..++..+...+...|++++|...++.+. +.. +.+...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~ 129 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL-LSQ-PQYEQLGSVN 129 (327)
T ss_dssp TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTS-TTTTTC----
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CccHHHHHHH
Confidence 36677889999999999 99999999999998 66678899999999999999999999999998 543 2223333323
Q ss_pred --------------HH-HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-Cc
Q 037178 140 --------------IT-MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DN 200 (311)
Q Consensus 140 --------------l~-~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~ 200 (311)
.. .+...|++++|.+.|++.. ..+...+..+...+.+.|++++|.+.+++..+ . .| +.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~--~~~~~ 206 (327)
T 3cv0_A 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-L--RPDDA 206 (327)
T ss_dssp ----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCH
T ss_pred hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h--CCCcH
Confidence 22 3778899999999999875 34778999999999999999999999999876 2 34 46
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------------
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN------------- 265 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------------- 265 (311)
.++..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.|++..+ |+
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence 788999999999999999999999998875 45788999999999999999999999998864 33
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 266 LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 266 ~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..+|..+..++.+.|+.++|.+++++.
T Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 678999999999999999999999876
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.9e-14 Score=116.00 Aligned_cols=193 Identities=10% Similarity=-0.067 Sum_probs=115.0
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
++...|..+-..+.+.| ++++|+..|++..+ .+.+...+..+...+.+.|++++|...+++.. +.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALG-RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV-ART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHH
Confidence 34456677777777778 88888888887777 55556677777777777888888888887777 443 3345566667
Q ss_pred HHHHHhc-----------CChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHH
Q 037178 140 ITMYSLC-----------GFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPC 205 (311)
Q Consensus 140 l~~~~~~-----------g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~ 205 (311)
..+|.+. |++++|...|++.. .| +...|..+...+...|++++|...|++..+ .. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHH
Confidence 7777776 66666666666543 22 445566666666666666666666666555 33 44555556
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+..++...|++++|...++...+.. +.+...+..+...+.+.|++++|...|++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666666666666666665553 33455555666666666666666655554
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.61 E-value=5.8e-14 Score=120.60 Aligned_cols=224 Identities=9% Similarity=-0.092 Sum_probs=187.1
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
+..|..+...+...| ++++|+..|+++.. .+.+..++..+...+...|++++|...++.+. +.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI-ALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCcchHHHHHHH
Confidence 445778888999999 99999999999998 66678899999999999999999999999998 554 446678888999
Q ss_pred HHHhcCChhHHHHHHHhcCC--C----ChHHHHHH------------HHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 142 MYSLCGFPLDSRRVFDSLKT--R----NLFQWNAL------------VSGFTKNELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~--~----~~~~y~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
.|.+.|++++|...|++..+ | +...+..+ ...+...|++++|...|+++.+ .. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-VC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCchHHH
Confidence 99999999999999998754 3 33444444 5788999999999999999876 21 2356778
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHH----------
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-LVSWN---------- 270 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~y~---------- 270 (311)
..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+ |+ ...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 889999999999999999999998875 55788999999999999999999999998874 33 33333
Q ss_pred --HHHHHHHhCCCcchHHHHHHhh
Q 037178 271 --SIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 271 --~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+...+.+.|++++|.+.+++.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2366789999999999999998
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.4e-14 Score=129.32 Aligned_cols=157 Identities=8% Similarity=-0.088 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
..++..+...+...|++++|...|++.. .|+...|..+...+...|++++|...|++... . ...+...+..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALK-L-DSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT-T-CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh-c-CcCCHHHHHHHHHHH
Confidence 3455555666666666666666666543 23355566666666666666666666666654 1 112344566666666
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHH
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
...|++++|...++...+.. +.+..++..+...|.+.|++++|.+.++++.+ .+..+|..+...|...|++++|.+
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66677777777766666554 33456666666667777777777777766553 245566777777777777777777
Q ss_pred HHHhh
Q 037178 288 LLIKM 292 (311)
Q Consensus 288 l~~~m 292 (311)
.++++
T Consensus 394 ~~~~a 398 (514)
T 2gw1_A 394 QYDLA 398 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.4e-14 Score=115.24 Aligned_cols=215 Identities=11% Similarity=-0.092 Sum_probs=185.3
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCch----hhHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSND----FIIN 136 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~----~~~~ 136 (311)
..|..+-..+...| ++++|+..|++... . .+...+..+...+...|++++|...++.+. +.. ..++ ..++
T Consensus 6 ~~~~~~g~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKAR-QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHHHH
Confidence 45788888999999 99999999999998 7 888999999999999999999999999988 432 1111 5788
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI 213 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~ 213 (311)
..+...|.+.|++++|...|++..+ ++. ..+.+.|++++|...++++.. ..| +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence 8999999999999999999998763 442 346677889999999999876 334 346788889999999
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
|++++|...+++..+.. +.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998876 55788999999999999999999999998874 356789999999999999999999999
Q ss_pred hh
Q 037178 291 KM 292 (311)
Q Consensus 291 ~m 292 (311)
+.
T Consensus 232 ~a 233 (258)
T 3uq3_A 232 AA 233 (258)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.60 E-value=2.3e-13 Score=116.83 Aligned_cols=231 Identities=12% Similarity=-0.034 Sum_probs=178.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCC----ChhhHHHH------------HHhcccCCChhHHHHHHHHHHh
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNAD----LKEATGVL------------LQACGHEKDIEIGKRVHELVSA 125 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~ 125 (311)
+...|..+...+...| ++++|...|+++....| +...+..+ ...+...|++++|...++.+.
T Consensus 70 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~- 147 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL- 147 (359)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Confidence 4567888888888888 89999999988888444 44444444 467778888999999988887
Q ss_pred hcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-
Q 037178 126 STQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF- 201 (311)
Q Consensus 126 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 201 (311)
+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...|++++|...|++..+ ..|+..
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~ 223 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKR 223 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCccchH
Confidence 543 45667788888889999999999999888653 3677888899999999999999999988876 334432
Q ss_pred hHH------------HHHHHHhccCChhhHHHHHHHHHHhCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 037178 202 TFP------------CVIKACGGIADVGFGSGVHGMAAKMGLIGDV----FVSNALIAMYGKCAFVEEMVKLFEVMPE-- 263 (311)
Q Consensus 202 t~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 263 (311)
.+. .+...+.+.|++++|...++...+..-. +. ..+..+...|.+.|++++|.+.+++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 222 2355688889999999999998876522 32 3355677889999999999999998874
Q ss_pred C-ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCc
Q 037178 264 R-NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 264 ~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
| +..+|..+...|...|++++|.+.+++. .+ +.|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a--~~--~~p~~ 339 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAA--QE--HNEND 339 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HT--TCTTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHH--Hh--cCCCC
Confidence 4 6678999999999999999999999998 43 35653
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=1.3e-13 Score=119.20 Aligned_cols=215 Identities=13% Similarity=-0.034 Sum_probs=153.4
Q ss_pred HHhcCCCHHHHHH-HHHhhccCC---C--ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178 73 LCEESKSLNKALS-LLQENLHNA---D--LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC 146 (311)
Q Consensus 73 ~~~~g~~~~~a~~-~~~~m~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~ 146 (311)
+.-.| ++++|++ .|++..... | +...+..+...+...|++++|...++.+. +.. +.+..++..+..+|.+.
T Consensus 35 ~~~~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HSC-TTCHHHHHHHHHHHHHT
T ss_pred hHHHH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHC
Confidence 33457 8999999 999877722 2 35678889999999999999999999998 654 55677889999999999
Q ss_pred CChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC---------------------------
Q 037178 147 GFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL--------------------------- 196 (311)
Q Consensus 147 g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------------------------- 196 (311)
|++++|.+.|++.. ..+..+|..+...|...|++++|...|+++.. ...
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999865 34788999999999999999999999998765 221
Q ss_pred --------------------CC---CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 037178 197 --------------------KP---DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE 253 (311)
Q Consensus 197 --------------------~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 253 (311)
.| +..++..+...+.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 12 23455666666667777777777777766653 3355667777777777777777
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 254 MVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 254 A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|.+.|++..+ .+..+|..+...|.+.|++++|.+.+++.
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776653 34556677777777777777777777766
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.3e-13 Score=110.64 Aligned_cols=195 Identities=9% Similarity=-0.116 Sum_probs=124.3
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+...|..+...+...| ++++|...|+++.+ .+.+...+..+...+...|++++|...++.+. +.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQ-DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL-SIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH-HhC-CCChHHHHHHH
Confidence 3445666777777777 77777777777776 55556667777777777777777777777776 433 33455666666
Q ss_pred HHHHhc-CChhHHHHHHHhcCC----C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178 141 TMYSLC-GFPLDSRRVFDSLKT----R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI 213 (311)
Q Consensus 141 ~~~~~~-g~~~~A~~l~~~m~~----~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~ 213 (311)
..|... |++++|...|+++.+ + +...|..+...+...|++++|...|+++.+ . .| +...+..+...+.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA-A--QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--STTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCchHHHHHHHHHHHc
Confidence 677777 777777777766543 1 245566666666677777777777766654 2 23 245566666666666
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
|++++|...++...+.....+...+..+...+.+.|+.++|...++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6666666666666655421455556666666666666666666666554
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=2.3e-13 Score=111.47 Aligned_cols=193 Identities=7% Similarity=-0.128 Sum_probs=134.0
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
...|..+...+...| ++++|...|+++.. .+.+...+..+...+...|++++|.+.++++. +.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRG-NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL-ASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTT-CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-cCcHHHHHHHHH
Confidence 566778888888888 88888888888877 55567777777888888888888888888877 443 335566677777
Q ss_pred HHHhcCChhHHHHHHHhcCC----C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCC
Q 037178 142 MYSLCGFPLDSRRVFDSLKT----R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIAD 215 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~----~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~ 215 (311)
.|.+.|++++|.+.|++..+ | +...|..+...+.+.|++++|.+.|++..+ . .| +...+..+...+...|+
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-L--NRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHcCC
Confidence 77777777777777777654 2 345666677777777777777777777655 2 23 34556666666777777
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+++|...++...+.. +.+...+..+...|.+.|+.++|.+.++++.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665543 3455566666666667777777776666655
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=4.6e-14 Score=113.67 Aligned_cols=192 Identities=11% Similarity=-0.026 Sum_probs=156.6
Q ss_pred CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHH
Q 037178 94 ADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNAL 170 (311)
Q Consensus 94 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~l 170 (311)
+++...+..+...+.+.|++++|...++... +.. +.+...+..+...+.+.|++++|...|++.. ..+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL-KEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4677788889999999999999999999998 554 4567788889999999999999999999865 3477889999
Q ss_pred HHHHHhC-----------CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178 171 VSGFTKN-----------ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS 238 (311)
Q Consensus 171 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 238 (311)
...+.+. |++++|...|++..+ +.|+ ...+..+-.++...|++++|...+++..+.. .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 9999999 999999999999876 4565 5678888899999999999999999999988 788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..+...|...|++++|...|++..+ | +...+..+...+.+.|++++|.+.+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999874 4 5678999999999999999999999887
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.7e-13 Score=112.26 Aligned_cols=192 Identities=10% Similarity=-0.017 Sum_probs=167.5
Q ss_pred hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHH
Q 037178 97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSG 173 (311)
Q Consensus 97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~ 173 (311)
...+..+...+...|++++|...++.+. +.. +.+..++..+...|.+.|++++|.+.|++.. ..+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKAL-EID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4567777888889999999999999998 554 4567788889999999999999999999865 3477889999999
Q ss_pred HHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 037178 174 FTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE 252 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 252 (311)
|...|++++|.+.|+++.. .+..|+ ...+..+...+...|++++|.+.+++..+.. +.+..++..+...|.+.|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999976 555564 5678888999999999999999999998876 456889999999999999999
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 253 EMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 253 ~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+|...+++..+ .+...+..+...+...|+.++|.+.++++
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999998875 45668888999999999999999999999
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.2e-14 Score=127.76 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=194.8
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
+...|..+...+...| ++++|...|+++....|+...+..+...+...|++++|...++.+. +.. +.+..++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKN-DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL-KLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH-TTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh-hcC-cCCHHHHHHHHH
Confidence 4567888999999999 9999999999999833448889999999999999999999999998 544 446778889999
Q ss_pred HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChh
Q 037178 142 MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~ 217 (311)
.|.+.|++++|...|++.. ..+...|..+...+...|++++|...|+++.+ . .| +..++..+...+.+.|+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR-K--FPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH-H--STTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H--cccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999864 34678999999999999999999999999876 2 34 4678889999999999999
Q ss_pred hHHHHHHHHHHhCCC-Cc----HHHHHHHHHHHHh---cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHH
Q 037178 218 FGSGVHGMAAKMGLI-GD----VFVSNALIAMYGK---CAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~ 286 (311)
+|...++.+.+..-. ++ ..++..+...|.+ .|++++|.+.|++..+ .+..+|..+...|.+.|++++|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998765311 11 3489999999999 9999999999998874 45678999999999999999999
Q ss_pred HHHHhh
Q 037178 287 DLLIKM 292 (311)
Q Consensus 287 ~l~~~m 292 (311)
+.+++.
T Consensus 470 ~~~~~a 475 (514)
T 2gw1_A 470 TLFEES 475 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 31
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.56 E-value=2.6e-13 Score=123.36 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=54.1
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELV 123 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 123 (311)
..+...|..+..++.+.| ++++|++.|+++.. .+.+..++..+...+...|++++|...++.+
T Consensus 56 p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346678889999999999 99999999999988 6667788888999999999999999999755
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2e-13 Score=113.18 Aligned_cols=209 Identities=8% Similarity=-0.107 Sum_probs=152.8
Q ss_pred cCCCHHHHHHHHHhhcc-CC----CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChh
Q 037178 76 ESKSLNKALSLLQENLH-NA----DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPL 150 (311)
Q Consensus 76 ~g~~~~~a~~~~~~m~~-~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~ 150 (311)
.| ++++|+..|+++.. .+ .+..++..+...+...|++++|...++++. +.. +.+..++..+...|...|+++
T Consensus 18 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TL-QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CH-HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred cc-hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35 78888888888777 21 135567777778888888888888888887 543 345677777888888888888
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 151 DSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 151 ~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
+|.+.|++..+ .+...|..+...|.+.|++++|...|+++.+ ..|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888887652 3667788888888888888888888888766 44655555555556667788888888887776
Q ss_pred HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 228 KMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN-------LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 228 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
... +++...+. ++..+...++.++|.+.+++..+.+ ..+|..+...|...|++++|.+.+++.
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 33444443 6666777777888888888777532 467777888888888888888888888
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=5.7e-14 Score=114.22 Aligned_cols=198 Identities=9% Similarity=-0.045 Sum_probs=142.4
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
..+...|..+...+...| ++++|...|+++.. .+.+...+..+...+...|++++|...++.+. +.. +.+..++..
T Consensus 20 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~ 96 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFG-DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL-ELD-SSAATAYYG 96 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CcchHHHHH
Confidence 345566788888888999 99999999999988 56677888888889999999999999999988 544 446777888
Q ss_pred HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
+...|.+.|++++|.+.|++.. ..+...|..+...+.+.|++++|...+++..+ .. ..+...+..+...+.+.|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-LN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHcCC
Confidence 8888999999999999988765 34677888888888999999999999988865 21 2245677788888888888
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+++|...++...+.. +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888888888887765 44677888888888888888888888887764
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=5.4e-13 Score=110.48 Aligned_cols=222 Identities=7% Similarity=-0.123 Sum_probs=181.4
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch--hhHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND--FIINTRLIT 141 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~ll~ 141 (311)
.+......+...| ++++|+..|++..+ .+.+...+..+...+...|++++|...++.+. +.+-.++ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNN-NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence 4556677888999 99999999999988 55556689999999999999999999999999 5432222 234788999
Q ss_pred HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChh
Q 037178 142 MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVG 217 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~ 217 (311)
.|.+.|++++|.+.|++.. ..+...|..+...|...|++++|...|++..+ ..|+ ...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 34678999999999999999999999999976 3554 455666663555556999
Q ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC---HHHHHHHHhhCCC-----CC------hhhHHHHHHHHHhCCCcc
Q 037178 218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF---VEEMVKLFEVMPE-----RN------LVSWNSIICGFSENGFSC 283 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~~------~~~y~~li~~~~~~g~~~ 283 (311)
+|.+.+++..+.. +.+...+..+...+...|+ +++|...+++..+ ++ ..+|..+...|.+.|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998875 4457888888888888888 7777777776653 33 257888999999999999
Q ss_pred hHHHHHHhh
Q 037178 284 ESFDLLIKM 292 (311)
Q Consensus 284 ~a~~l~~~m 292 (311)
+|.+.+++.
T Consensus 239 ~A~~~~~~a 247 (272)
T 3u4t_A 239 KADAAWKNI 247 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999999
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=5.9e-14 Score=116.37 Aligned_cols=222 Identities=8% Similarity=-0.089 Sum_probs=176.5
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+...|..+...+...| ++++|...|+++.. .+.+..+|..+...+...|++++|...++.+. +.. +.+..++..+.
T Consensus 42 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcC-ccccHHHHHHH
Confidence 4567899999999999 99999999999998 66678899999999999999999999999998 544 44678888999
Q ss_pred HHHHhcCChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 141 TMYSLCGFPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
.+|.+.|++++|.+.|+++. .|+...+...+..+...|++++|...+++... . ..++...+ .++..+...++.++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-K-SDKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-H-SCCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCcchHHH-HHHHHHHHhcCHHH
Confidence 99999999999999999876 35444445555566777999999999988765 2 22344444 47777888888899
Q ss_pred HHHHHHHHHHhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178 219 GSGVHGMAAKMGLI---GDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL 289 (311)
Q Consensus 219 a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~ 289 (311)
|...+....+.... .+..++..+...|.+.|++++|...|++..+.+...+.....++...|++++|.+.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 99988877544311 125889999999999999999999999998765555566677888888888887765
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.4e-12 Score=104.54 Aligned_cols=193 Identities=6% Similarity=-0.103 Sum_probs=168.3
Q ss_pred ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHH
Q 037178 96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVS 172 (311)
Q Consensus 96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~ 172 (311)
+...+..+...+...|++++|...++.+. +.. +.+...+..+...|...|++++|.+.|++.. ..+...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDAL-KSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45677888889999999999999999998 544 4457788889999999999999999999875 347788999999
Q ss_pred HHHhC-CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 173 GFTKN-ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 173 ~~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
.+... |++++|...|+++.+ .+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 99999 999999999999986 544454 5678889999999999999999999998875 4468899999999999999
Q ss_pred HHHHHHHHhhCCC----CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 251 VEEMVKLFEVMPE----RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 251 ~~~A~~~~~~m~~----~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++|.+.+++..+ .+...+..+...+...|+.+.|..+++.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999998864 45677888888999999999999999998
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.54 E-value=9.2e-13 Score=119.78 Aligned_cols=222 Identities=11% Similarity=-0.019 Sum_probs=189.1
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
+|..+-..+...| ++++|...|++.....|+...+..+...+...|++++|...++.+. +.. +.+..++..+...|.
T Consensus 245 ~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKN-NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAV-DLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHh-ccC-CCCHHHHHHHHHHHH
Confidence 5677778888999 9999999999999955668889999999999999999999999998 554 456778899999999
Q ss_pred hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHH
Q 037178 145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~ 220 (311)
..|++++|...|++.. ..+...|..+...+...|++++|...|++..+ . .| +...+..+...+...|++++|.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL-K--FPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999875 34678899999999999999999999999976 3 34 4568889999999999999999
Q ss_pred HHHHHHHHhCC-----CCcHHHHHHHHHHHHhc----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCc
Q 037178 221 GVHGMAAKMGL-----IGDVFVSNALIAMYGKC----------AFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFS 282 (311)
Q Consensus 221 ~~~~~m~~~g~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~ 282 (311)
+.++.+.+..- ......+..+...|.+. |++++|...|++..+ .+..+|..+...|.+.|++
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 99999876531 11223345556777787 999999999999874 3567899999999999999
Q ss_pred chHHHHHHhh
Q 037178 283 CESFDLLIKM 292 (311)
Q Consensus 283 ~~a~~l~~~m 292 (311)
++|.+.|++.
T Consensus 479 ~~A~~~~~~a 488 (537)
T 3fp2_A 479 DEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.54 E-value=3.7e-13 Score=113.42 Aligned_cols=208 Identities=8% Similarity=-0.022 Sum_probs=170.8
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCCh--hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADLK--EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
|+-....| ++..|+..++......|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g-~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIG-SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTT-CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHH-HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCCC
Confidence 45566778 9999999998877644443 4556778999999999998875543 2 3678889999999999999
Q ss_pred ChhHHHHHHHhcC----CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178 148 FPLDSRRVFDSLK----TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 148 ~~~~A~~l~~~m~----~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 222 (311)
+.++|.+.++++. .| +...+..+...+...|++++|.+.+++ ..+...+..+...+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999863 24 566778888999999999999999976 34677899999999999999999999
Q ss_pred HHHHHHhCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 223 HGMAAKMGLIGDVF---VSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 223 ~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++.+.+.. |+.. ....++..+...|++++|..+|+++.+ .+...|+.+..++.+.|++++|.+.+++.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999875 4432 123344555667999999999999974 46778999999999999999999999998
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=3.7e-12 Score=105.84 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=189.4
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
+..++..+-..+...| ++++|+..|++..+ +.+...+..+...+.. .+++++|...|++.. +.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEK-DFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CHHHHH
Confidence 4456777888889999 99999999999887 3455677778888888 999999999999998 665 677788
Q ss_pred HHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178 138 RLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIK 208 (311)
Q Consensus 138 ~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~ 208 (311)
.+...|.. .|++++|.+.|++..+ .+..++..+...|.. .|++++|...|++..+ .+ +...+..+-.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 89999999 9999999999998654 477889999999999 9999999999999987 54 5567777777
Q ss_pred HHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh-
Q 037178 209 ACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSE- 278 (311)
Q Consensus 209 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~- 278 (311)
.+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 7877 899999999999998875 56788889999999 9999999999998775 346678888899998
Q ss_pred ---CCCcchHHHHHHhhhhccCC
Q 037178 279 ---NGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 279 ---~g~~~~a~~l~~~m~~~~~g 298 (311)
.++.++|.+.+++. .+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a--~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKG--CKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHH--HHHT
T ss_pred CCcccCHHHHHHHHHHH--HHcC
Confidence 99999999999988 5543
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=3.4e-13 Score=109.59 Aligned_cols=193 Identities=9% Similarity=0.041 Sum_probs=151.3
Q ss_pred CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHH
Q 037178 95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALV 171 (311)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li 171 (311)
.....|..+...+...|++++|...++++. +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAI-EEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHH-TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 455677778888899999999999999998 543 4567888889999999999999999999865 34778899999
Q ss_pred HHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 172 SGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
..+...|++++|.+.|++..+ .. ..+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALR-AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999876 32 2356678889999999999999999999998875 45788999999999999999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 252 EEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 252 ~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++|.+.|++..+ .+..+|..+...|...|++++|.+.+++.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999998874 45678999999999999999999999999
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.9e-12 Score=113.04 Aligned_cols=222 Identities=8% Similarity=-0.027 Sum_probs=188.8
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCC-hhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKD-IEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
..|+.+-..+...| ++++|+..|++... .+-+...|..+..++...|+ +++|...++++. +.. +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g-~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDE-RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTC-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHC-CCCHHHHHHHHH
Confidence 46888888899999 99999999999999 66667889999999999996 999999999999 655 456788999999
Q ss_pred HHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhc-cCCh
Q 037178 142 MYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGG-IADV 216 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~-~g~~ 216 (311)
+|.+.|++++|...|++.. ..+...|..+..++.+.|++++|+..|+++.+ +.|+ ...|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999876 34889999999999999999999999999987 4564 5678888888888 6666
Q ss_pred hhH-----HHHHHHHHHhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHhhCC-C-CChhhHHHHHHHHHhCC-------
Q 037178 217 GFG-----SGVHGMAAKMGLIGDVFVSNALIAMYGKCA--FVEEMVKLFEVMP-E-RNLVSWNSIICGFSENG------- 280 (311)
Q Consensus 217 ~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~-~-~~~~~y~~li~~~~~~g------- 280 (311)
++| ...+.+..+.. +-+...|+.+...|.+.| ++++|.+.++++. . .+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 888 47888888775 457889999999999988 6899999998882 1 35568889999998874
Q ss_pred --CcchHHHHHHhh
Q 037178 281 --FSCESFDLLIKM 292 (311)
Q Consensus 281 --~~~~a~~l~~~m 292 (311)
..++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 358899999988
No 42
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.48 E-value=1.4e-13 Score=120.24 Aligned_cols=177 Identities=10% Similarity=0.061 Sum_probs=88.1
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+|...|..++.++...| ++++|...++..++..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+
T Consensus 58 a~D~~~y~~V~~~ae~~g-~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~I 128 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSG-NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQV 128 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT--------CC--------
T ss_pred CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHH
Confidence 457778999999999999 9999999777776644557888999999999999988776663 3677799999
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
...|...|++++|...|..+ ..|..++.++++.|++++|.+.++++ .+..||..++.+|...|+++.|
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp --------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHH
Confidence 99999999999999999988 37999999999999999999999887 2678899999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
...... +..+..-...++..|.+.|++++|..+++...
T Consensus 197 ~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 197 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 654443 22333335568888999999999988888665
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2.9e-11 Score=102.53 Aligned_cols=207 Identities=10% Similarity=-0.035 Sum_probs=156.9
Q ss_pred HHHHHHHHhhcc-CCCChhhHHHHHHhcc-------cCCCh-------hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178 81 NKALSLLQENLH-NADLKEATGVLLQACG-------HEKDI-------EIGKRVHELVSASTQFSNDFIINTRLITMYSL 145 (311)
Q Consensus 81 ~~a~~~~~~m~~-~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~ 145 (311)
++|..+|++... .+.+...|..+...+. ..|++ ++|..+|++.. +.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHh
Confidence 678888888888 6667777877777665 35776 88999999888 42113355688888888999
Q ss_pred cCChhHHHHHHHhcCC--C-ChH-HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHH-hccCChhhH
Q 037178 146 CGFPLDSRRVFDSLKT--R-NLF-QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKAC-GGIADVGFG 219 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~--~-~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~-~~~g~~~~a 219 (311)
.|++++|.++|++..+ | +.. .|..+...+.+.|++++|..+|++..+ . .|+ ...|....... ...|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-S--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999988653 3 343 788888888889999999999998876 3 233 33343332221 236899999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPER-------NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.++|+...+.. +-+...|..++..+.+.|++++|..+|++..+. ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887764 446788888899999999999999999887641 3457888888888899999999998888
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=3.4e-12 Score=114.88 Aligned_cols=208 Identities=10% Similarity=-0.097 Sum_probs=177.4
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCCh-hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHH
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDI-EIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVF 156 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 156 (311)
.+++++..++.... .+.+...+..+...+...|++ ++|...|++.. +.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV-KLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46778888887776 555778899999999999999 99999999998 554 445778999999999999999999999
Q ss_pred HhcC--CCChHHHHHHHHHHHhC---------CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhcc--------CCh
Q 037178 157 DSLK--TRNLFQWNALVSGFTKN---------ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGI--------ADV 216 (311)
Q Consensus 157 ~~m~--~~~~~~y~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~--------g~~ 216 (311)
++.. .|+...|..+...+... |++++|.+.|++..+ ..|+ ...|..+..++... |++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9875 46778899999999999 999999999999876 3454 56788888999888 999
Q ss_pred hhHHHHHHHHHHhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHH
Q 037178 217 GFGSGVHGMAAKMGLI---GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLI 290 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~ 290 (311)
++|.+.+++..+.. + -+...|..+...|.+.|++++|.+.|++..+ | +..++..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998874 3 4789999999999999999999999998874 4 45678889999999999999987665
Q ss_pred hh
Q 037178 291 KM 292 (311)
Q Consensus 291 ~m 292 (311)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5e-12 Score=103.41 Aligned_cols=182 Identities=6% Similarity=-0.101 Sum_probs=159.3
Q ss_pred hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-C-------hHH
Q 037178 97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-N-------LFQ 166 (311)
Q Consensus 97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~-------~~~ 166 (311)
...|..+...+...|++++|...++.+. +.. .+..++..+..+|...|++++|.+.|++..+ | + ...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4567788888999999999999999999 666 7788899999999999999999999998763 2 2 578
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYG 246 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 246 (311)
|..+...+.+.|++++|...|++... ..|+ ...+.+.|++++|...++.+.+.. +.+...+..+...|.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLT---EHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh---cCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 99999999999999999999999977 3455 345777899999999999988764 446788999999999
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 247 KCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 247 ~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..|++++|.+.|++..+ .+..+|..+...|...|++++|.+.+++.
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999874 46778999999999999999999999999
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=2.6e-10 Score=94.13 Aligned_cols=197 Identities=8% Similarity=0.013 Sum_probs=160.2
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChh----hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKE----ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIIN 136 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~ 136 (311)
.+...|..+...+...| ++++|+..|++.....++.. .|..+...+...|++++|...++... +.. +.+..++
T Consensus 35 ~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~ 111 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV-DRD-TTRLDMY 111 (272)
T ss_dssp CCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCTHHH
T ss_pred CcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcC-cccHHHH
Confidence 35568999999999999 99999999999988223333 38889999999999999999999998 544 4456788
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhc
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGG 212 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~ 212 (311)
..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|.+.|++..+ ..|+ ...+..+...+..
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHH
Confidence 9999999999999999999999874 3667788888344445699999999999976 3455 5667778888888
Q ss_pred cCC---hhhHHHHHHHHHHhC-CCCc------HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 213 IAD---VGFGSGVHGMAAKMG-LIGD------VFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 213 ~g~---~~~a~~~~~~m~~~g-~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
.|+ .++|...+++..+.. -.|+ ..+|..+...|.+.|++++|.+.|++..+
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888 888999998887652 1222 26888899999999999999999998764
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.6e-11 Score=103.28 Aligned_cols=228 Identities=7% Similarity=-0.038 Sum_probs=164.5
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-----C---CC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc-----
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-----N---AD-LKEATGVLLQACGHEKDIEIGKRVHELVSAST----- 127 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-----~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----- 127 (311)
+..+|..+...+...| ++++|..+|+++.+ . .| ....+..+...+...|++++|...++++. +.
T Consensus 26 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-AIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHh
Confidence 3456888999999999 99999999999887 1 12 24567888888999999999999999887 43
Q ss_pred -C-CCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC
Q 037178 128 -Q-FSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT 194 (311)
Q Consensus 128 -g-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 194 (311)
+ .+....++..+...|...|++++|...|++..+ + ....|..+...+...|++++|.+.|++... .
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~ 182 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE-I 182 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H
Confidence 2 233467888899999999999999999987642 1 345788999999999999999999999865 2
Q ss_pred ------CCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh-------CCCCc-------HHHHHHHHHHHHhcCCHHH
Q 037178 195 ------ELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM-------GLIGD-------VFVSNALIAMYGKCAFVEE 253 (311)
Q Consensus 195 ------~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~-------~~~~~~li~~~~~~g~~~~ 253 (311)
+..|+ ..++..+...+...|++++|.+.++++.+. ...+. ...+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 22333 357888899999999999999999998764 11221 2222333333444455555
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 254 MVKLFEVMPER---NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 254 A~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|...++...+. +..+|..+...|.+.|++++|.+.+++.
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55566655542 3467899999999999999999999987
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=6.9e-11 Score=91.97 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA 209 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~ 209 (311)
.+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|...+++... ..|+ ...+..+...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHH
Confidence 344444444444444444444444432 12344444444444555555555554444433 1121 2233333444
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHH
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~ 286 (311)
+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 444445555555544444432 22344444445555555555555555544432 23334444555555555555555
Q ss_pred HHHHhh
Q 037178 287 DLLIKM 292 (311)
Q Consensus 287 ~l~~~m 292 (311)
+.|++.
T Consensus 162 ~~~~~a 167 (184)
T 3vtx_A 162 KYFKKA 167 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=1.9e-11 Score=110.00 Aligned_cols=196 Identities=10% Similarity=-0.007 Sum_probs=172.8
Q ss_pred CCCcccHHHHHHHHHhcCCCH-HHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 60 STQGLHFLQEITTLCEESKSL-NKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~-~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
..+...|..+-.++...| ++ ++|++.|++..+ .+.+...|..+...+...|++++|...|+... +.. |+...+.
T Consensus 99 ~~~a~~~~~lg~~~~~~g-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~ 174 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTP-DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL-THC--KNKVSLQ 174 (474)
T ss_dssp CCCHHHHHHHHHHHTSSS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTC--CCHHHHH
T ss_pred chhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC--CCHHHHH
Confidence 346677888999999999 99 999999999998 66668899999999999999999999999998 554 6678889
Q ss_pred HHHHHHHhc---------CChhHHHHHHHhcC---CCChHHHHHHHHHHHhC--------CChhhHHHHHHHhhhcCCCC
Q 037178 138 RLITMYSLC---------GFPLDSRRVFDSLK---TRNLFQWNALVSGFTKN--------ELYTDVLSIFVELSSDTELK 197 (311)
Q Consensus 138 ~ll~~~~~~---------g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~ 197 (311)
.+...|... |++++|.+.|++.. ..+...|..+..+|... |++++|.+.|++..+ +.
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~ 251 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK---VD 251 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH---hC
Confidence 999999999 99999999999865 34788999999999998 999999999999977 34
Q ss_pred C----CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 198 P----DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 198 p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
| +...|..+..++...|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.+.++..
T Consensus 252 p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 5 56789999999999999999999999998876 45678899999999999999999998887753
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=8.6e-12 Score=104.93 Aligned_cols=167 Identities=10% Similarity=-0.012 Sum_probs=135.9
Q ss_pred ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc-------CCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-------
Q 037178 96 LKEATGVLLQACGHEKDIEIGKRVHELVSAST-------QFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT------- 161 (311)
Q Consensus 96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~------- 161 (311)
+..++..+...+...|++++|..+++++. +. ..+....++..+...|...|++++|...|++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45678888889999999999999999988 53 3344567888899999999999999999987642
Q ss_pred ---C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-----CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh--
Q 037178 162 ---R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT-----ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM-- 229 (311)
Q Consensus 162 ---~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-- 229 (311)
+ ....|..+...|...|++++|...|++..+.. +-.| ....+..+...+...|++++|.+++++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 34678999999999999999999999987511 2223 2456888889999999999999999998775
Q ss_pred ----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 230 ----GLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 230 ----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+..| ...++..+...|.+.|++++|.+.+++..+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233 457888999999999999999999998764
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=1.4e-10 Score=90.28 Aligned_cols=158 Identities=8% Similarity=-0.079 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..+-..+.+.| ++++|++.|++..+ .+-+..++..+...+.+.|++++|...+.... ... +.+...+..+...+
T Consensus 7 iy~~lG~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 7 IYMDIGDKKRTKG-DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV-VLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-chhHHHHHHHHHHH
Confidence 4555555555555 55555555555555 33344455555555555555555555555554 222 22333344444444
Q ss_pred HhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhH
Q 037178 144 SLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a 219 (311)
...++++.|...+++.. ..+...+..+...|.+.|++++|++.|++..+ +.|+ ..+|..+..++.+.|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS---IKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH---hcchhhhHHHHHHHHHHHCCCHHHH
Confidence 45555555555444432 12344444444444555555555555444433 1222 23344444444444444444
Q ss_pred HHHHHHHHH
Q 037178 220 SGVHGMAAK 228 (311)
Q Consensus 220 ~~~~~~m~~ 228 (311)
.+.+++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444433
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.4e-10 Score=88.26 Aligned_cols=157 Identities=8% Similarity=-0.059 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~ 209 (311)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...+++..+ . ...+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA-D-APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHH
Confidence 45667788888899999999999998774 3677889999999999999999999999876 3 12345678888889
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHH
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~ 286 (311)
+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.+++..+ .+..+|..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988875 55778889999999999999999999998764 45678899999999999999999
Q ss_pred HHHHhh
Q 037178 287 DLLIKM 292 (311)
Q Consensus 287 ~l~~~m 292 (311)
+.+++.
T Consensus 165 ~~~~~~ 170 (186)
T 3as5_A 165 PHFKKA 170 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=4.9e-10 Score=92.92 Aligned_cols=191 Identities=10% Similarity=-0.035 Sum_probs=164.1
Q ss_pred CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHH
Q 037178 95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNA 169 (311)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~ 169 (311)
.+..++..+...+...|++++|...|++.. +. -+...+..+...|.. .|++++|...|++..+ .+...+..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356677788888889999999999999998 53 345677778999999 9999999999998653 47788999
Q ss_pred HHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178 170 LVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNAL 241 (311)
Q Consensus 170 li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 241 (311)
+...|.. .|++++|...|++..+ .+ +...+..+-..+.. .+++++|.+.+++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 9999999 9999999999999987 54 67788888888888 999999999999999876 56788888
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCcchHHHHHHhhhhccCC
Q 037178 242 IAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICGFSE----NGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 242 i~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~~~g 298 (311)
...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.+++. .+.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--~~~~ 216 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA--CELE 216 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH--HHTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH--HhCC
Confidence 889988 9999999999998775 456788889999999 99999999999998 5543
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=3e-10 Score=87.69 Aligned_cols=161 Identities=9% Similarity=-0.010 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
..|..+...+...| ++++|...|+++.. .+.+...+..+...+...|++++|...++.+. +.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAG-RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL-ADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHH
Confidence 34667777788888 88888888888887 55566777778888888888888888888877 443 3455666667777
Q ss_pred HHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 143 YSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
|...|++++|.+.|++.. ..+...|..+...+...|++++|.+.+++... .. ..+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG-LR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-cC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777654 23556666667777777777777777776654 21 12345566666666666666666
Q ss_pred HHHHHHHHHh
Q 037178 220 SGVHGMAAKM 229 (311)
Q Consensus 220 ~~~~~~m~~~ 229 (311)
.+.++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666665543
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=1.5e-11 Score=108.07 Aligned_cols=227 Identities=9% Similarity=-0.094 Sum_probs=180.2
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc----C---CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----C-CCc
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH----N---ADLKEATGVLLQACGHEKDIEIGKRVHELVSAST----Q-FSN 131 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~----~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g-~~~ 131 (311)
..|..+...+...| ++++|...|++... . ......+..+...+...|++++|...++++. +. + ...
T Consensus 87 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~ 164 (411)
T 4a1s_A 87 AIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHH
Confidence 46888999999999 99999999999876 1 1224567888888999999999999999877 33 1 123
Q ss_pred hhhHHHHHHHHHHhcCC-----------------hhHHHHHHHhcCC-------C--ChHHHHHHHHHHHhCCChhhHHH
Q 037178 132 DFIINTRLITMYSLCGF-----------------PLDSRRVFDSLKT-------R--NLFQWNALVSGFTKNELYTDVLS 185 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~-----------------~~~A~~l~~~m~~-------~--~~~~y~~li~~~~~~g~~~~a~~ 185 (311)
...++..+...|...|+ +++|.+.|++..+ + ....|..+...|...|++++|..
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 45578889999999999 9999888877532 1 33578899999999999999999
Q ss_pred HHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhCC--C---CcHHHHHHHHHHHHhcCCHHHHHH
Q 037178 186 IFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMGL--I---GDVFVSNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 186 ~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~---~~~~~~~~li~~~~~~g~~~~A~~ 256 (311)
.|++..+...-.++ ..++..+...+...|++++|...+++..+..- . ....++..+...|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 245 HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987651111112 23788899999999999999999988765421 1 125788899999999999999999
Q ss_pred HHhhCCC-----CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 257 LFEVMPE-----RN----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 257 ~~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+++..+ .+ ..+|..+...|...|++++|.+.+++.
T Consensus 325 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9998774 22 347888999999999999999999987
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.26 E-value=1.8e-11 Score=107.51 Aligned_cols=226 Identities=9% Similarity=-0.060 Sum_probs=178.8
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhc----C-CCchhh
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLK----EATGVLLQACGHEKDIEIGKRVHELVSAST----Q-FSNDFI 134 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g-~~~~~~ 134 (311)
.+..+-..+...| ++++|+..|+++.+ .+.+. ..|..+...+...|++++|...+++.. +. + .+....
T Consensus 50 ~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAG-DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL-TLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccCchHHHH
Confidence 4556677888999 99999999999998 43343 467888888999999999999999877 32 1 123456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC---------CChHHHHHHHHHHHhCCC-----------------hhhHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT---------RNLFQWNALVSGFTKNEL-----------------YTDVLSIFV 188 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~---------~~~~~y~~li~~~~~~g~-----------------~~~a~~~~~ 188 (311)
++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 788899999999999999999987642 134578899999999999 999999988
Q ss_pred Hhhhc---CCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCC---C--CcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178 189 ELSSD---TELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL---I--GDVFVSNALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 189 ~m~~~---~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (311)
+..+. .+-.+ ...++..+...+...|++++|.+.+++..+..- . ....++..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86430 11112 234788888999999999999999988765421 1 113488899999999999999999999
Q ss_pred hCCC-----C----ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 260 VMPE-----R----NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 260 ~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+..+ . ...+|..+...|...|++++|.+.+++.
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764 1 1467888999999999999999999987
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=2.8e-11 Score=102.49 Aligned_cols=228 Identities=10% Similarity=-0.062 Sum_probs=178.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc----C--CC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC-CCc---
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH----N--AD-LKEATGVLLQACGHEKDIEIGKRVHELVSASTQ-FSN--- 131 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~----~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~--- 131 (311)
...|..+...+...| ++++|.+.+++... . .+ ...++..+...+...|++++|...+++.. +.. -..
T Consensus 43 ~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~ 120 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELNDKV 120 (338)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHhcCch
Confidence 356888999999999 99999999998776 1 11 24567788888999999999999999876 321 111
Q ss_pred -hhhHHHHHHHHHHhcCC--------------------hhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChh
Q 037178 132 -DFIINTRLITMYSLCGF--------------------PLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYT 181 (311)
Q Consensus 132 -~~~~~~~ll~~~~~~g~--------------------~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~ 181 (311)
...++..+...|...|+ +++|.+.+++..+ . ....|..+...+...|+++
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 14478889999999999 9999888877532 1 2357888999999999999
Q ss_pred hHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-cHHHHHHHHHHHHhcCCHH
Q 037178 182 DVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-DVFVSNALIAMYGKCAFVE 252 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~ 252 (311)
+|.+.+++..+...-.++ ..++..+...+...|++++|...+++..+.. -.+ ...++..+...|...|+++
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 999999987541111111 2378888899999999999999998876542 111 1567888999999999999
Q ss_pred HHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 253 EMVKLFEVMPE-----RN----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 253 ~A~~~~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+|.+.+++..+ .+ ..+|..+...|.+.|++++|.+.+++.
T Consensus 281 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 281 KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999998764 22 347888999999999999999999998
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.25 E-value=4.5e-10 Score=98.01 Aligned_cols=211 Identities=9% Similarity=0.030 Sum_probs=173.7
Q ss_pred CCCcccHHHHHHHHHhcCCC-HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 60 STQGLHFLQEITTLCEESKS-LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~-~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
..+...|+.+-.++...| + +++|+..|++... .+-+...|..+..++...|++++|...++.+. +.. +-+...|.
T Consensus 128 P~~~~a~~~~g~~l~~~g-~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal-~ld-P~~~~a~~ 204 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQ-KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL-NQD-AKNYHAWQ 204 (382)
T ss_dssp TTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-ccCHHHHH
Confidence 345678999999999999 8 9999999999999 66678899999999999999999999999999 655 55778899
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHh-CCChhhH-----HHHHHHhhhcCCCCCC-cchHHHHH
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTK-NELYTDV-----LSIFVELSSDTELKPD-NFTFPCVI 207 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~t~~~li 207 (311)
.+..++.+.|++++|...|+++.+ .+...|+.+..++.+ .|..++| +..|++... +.|+ ...|..+.
T Consensus 205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~ 281 (382)
T 2h6f_A 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLK 281 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHH
Confidence 999999999999999999999763 477899999999999 6776888 477888766 4565 45788888
Q ss_pred HHHhccC--ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHhhC-CCCCh---hhHHHH
Q 037178 208 KACGGIA--DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA---------FVEEMVKLFEVM-PERNL---VSWNSI 272 (311)
Q Consensus 208 ~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~---~~y~~l 272 (311)
..+.+.| ++++|.+.+.++ +. -+.+...+..+.+.|.+.| .+++|.++|+++ .+.|. ..|.-+
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 8888888 689999999887 33 3557789999999999874 369999999999 65444 356666
Q ss_pred HHHHHh
Q 037178 273 ICGFSE 278 (311)
Q Consensus 273 i~~~~~ 278 (311)
...+..
T Consensus 360 ~~~l~~ 365 (382)
T 2h6f_A 360 GRSLQS 365 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.25 E-value=5.1e-11 Score=104.07 Aligned_cols=127 Identities=9% Similarity=-0.095 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-cHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-DVF 236 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~ 236 (311)
+|..+...|...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++..+.. -.+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4445555555555555555555554330000111 1144444455555555555555555443221 000 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---C------hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVMPER---N------LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~------~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++..+...|.+.|++++|.+.+++..+. . ..+|..+...|...|++++|.+.+++.
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555555442 1 124444555555555555555555555
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.24 E-value=3.5e-11 Score=105.07 Aligned_cols=198 Identities=10% Similarity=-0.104 Sum_probs=106.5
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCC--------------------hhHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKD--------------------IEIGK 117 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~ 117 (311)
+|..+...+...| ++++|...+++... ..++ ..++..+...+...|+ +++|.
T Consensus 89 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 89 ASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4555555555666 66666666665554 1111 2245555555555666 66666
Q ss_pred HHHHHHHhh---cCCC-chhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCChhhHH
Q 037178 118 RVHELVSAS---TQFS-NDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNELYTDVL 184 (311)
Q Consensus 118 ~~~~~m~~~---~g~~-~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~ 184 (311)
..++...+. .+-. ....++..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 655554311 1111 1123455566666666666666666655431 11 235666666666677777777
Q ss_pred HHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-cHHHHHHHHHHHHhcCCHHHHH
Q 037178 185 SIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG-DVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 185 ~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A~ 255 (311)
..+++......-.++ ..++..+...+...|++++|...+++..+.. -.+ ...++..+...|.+.|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 766665431100111 2355566666666677777766666654431 011 1445666666666667777777
Q ss_pred HHHhhCCC
Q 037178 256 KLFEVMPE 263 (311)
Q Consensus 256 ~~~~~m~~ 263 (311)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666555
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=1e-09 Score=92.90 Aligned_cols=196 Identities=7% Similarity=-0.087 Sum_probs=158.4
Q ss_pred CCcccHHHHHHHHH-------hcCCCH-------HHHHHHHHhhcc-CCCC-hhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 61 TQGLHFLQEITTLC-------EESKSL-------NKALSLLQENLH-NADL-KEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 61 ~~~~~~~~li~~~~-------~~g~~~-------~~a~~~~~~m~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
.+...|..+...+. +.| ++ ++|..+|++... +.|+ ...|..+...+.+.|++++|..+|+++.
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhcc-chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35556777777765 357 75 999999999998 6665 4588999999999999999999999998
Q ss_pred hhcCCCch-hh-HHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHH-hCCChhhHHHHHHHhhhcCCCCC
Q 037178 125 ASTQFSND-FI-INTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFT-KNELYTDVLSIFVELSSDTELKP 198 (311)
Q Consensus 125 ~~~g~~~~-~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~p 198 (311)
+. .|+ .. +|..+...+.+.|++++|.++|++..+ .+...|........ ..|++++|..+|++..+ ..|
T Consensus 127 -~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~---~~p 200 (308)
T 2ond_A 127 -AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYG 200 (308)
T ss_dssp -TS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH---HHT
T ss_pred -hc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCC
Confidence 53 443 33 899999999999999999999998764 24455554433322 37999999999999876 234
Q ss_pred -CcchHHHHHHHHhccCChhhHHHHHHHHHHhC-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 199 -DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG-LIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 199 -~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+...|..++..+.+.|++++|..+|++..+.. ++| ....|..++..+.+.|+.++|..+++++.+
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888999999999999999999999873 455 467899999999999999999999998774
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=2.5e-10 Score=96.54 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=176.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhh---cCCC-chhhHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAS---TQFS-NDFIIN 136 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~-~~~~~~ 136 (311)
+...-..+...| ++++|...|+++.. .+.+ ...+..+...+...|++++|...+++..+. .+-. ....++
T Consensus 8 l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 445566788899 99999999999988 4334 356788888999999999999999987621 1212 235678
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCC--------------------hhhHHHHH
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNEL--------------------YTDVLSIF 187 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~--------------------~~~a~~~~ 187 (311)
..+...|...|++++|...|++..+ .+ ..+|..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8899999999999999999988642 22 3478899999999999 99999998
Q ss_pred HHhhhc---CCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037178 188 VELSSD---TELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLI-GDVFVSNALIAMYGKCAFVEEMVKLF 258 (311)
Q Consensus 188 ~~m~~~---~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (311)
++.... .+..+ ...++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876430 11112 1346888888999999999999999887654 211 12348888999999999999999999
Q ss_pred hhCCC-----CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 259 EVMPE-----RN----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 259 ~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++..+ .+ ..++..+...|...|++++|.+.+++.
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98764 22 457888999999999999999999887
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1e-09 Score=95.72 Aligned_cols=224 Identities=8% Similarity=-0.070 Sum_probs=174.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC-----CchhhHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQF-----SNDFIIN 136 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~-----~~~~~~~ 136 (311)
.-..+...| ++++|+..|++... ..+| ..++..+...+...|+.+.|...+++..+-..- .....++
T Consensus 109 ~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQR-EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 344566789 99999999999887 2233 356888888999999999999999988722111 1124578
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCC-CcchH
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKP-DNFTF 203 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~t~ 203 (311)
+.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|.+.|++..+- .+..| ...++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8899999999999999999987652 12 247889999999999999999999887540 13323 34678
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHh----CCCCcHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCC--ChhhHHHHHH
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKM----GLIGDVFVSNALIAMYGKCAF---VEEMVKLFEVMPER--NLVSWNSIIC 274 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~--~~~~y~~li~ 274 (311)
..+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.... ....+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 89999999999999999999887654 222233446778888999999 99999999998652 2347788999
Q ss_pred HHHhCCCcchHHHHHHhhh
Q 037178 275 GFSENGFSCESFDLLIKMM 293 (311)
Q Consensus 275 ~~~~~g~~~~a~~l~~~m~ 293 (311)
.|...|++++|.+.+++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999884
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=3.7e-10 Score=106.22 Aligned_cols=157 Identities=9% Similarity=-0.014 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcC--C-CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHH
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLK--T-RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVI 207 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li 207 (311)
+...|+.|-..|.+.|++++|.+.|++.. . .+..+|+.+..+|.+.|++++|.+.|++..+ +.|+ ...|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 45567777777777777777777777654 2 3566777777777777777777777777665 4454 45677777
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE 284 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~ 284 (311)
.++.+.|++++|.+.+++..+.. +-+...|+.+...|.+.|++++|.+.|++..+ | +...|..+...|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777777777664 34567777777777777888877777777663 3 44677777777777787777
Q ss_pred HHHHHHhh
Q 037178 285 SFDLLIKM 292 (311)
Q Consensus 285 a~~l~~~m 292 (311)
|.+.+++.
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=1.2e-09 Score=99.60 Aligned_cols=207 Identities=10% Similarity=-0.030 Sum_probs=167.0
Q ss_pred HHHHHHHHhhcc-CCCChhhHHHHHHhccc-------CCChh-------HHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178 81 NKALSLLQENLH-NADLKEATGVLLQACGH-------EKDIE-------IGKRVHELVSASTQFSNDFIINTRLITMYSL 145 (311)
Q Consensus 81 ~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~ 145 (311)
++|..+|++... .+.+...|......+.+ .|+++ +|..+++... +.-.+.+...|..+...+.+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHh
Confidence 477889999888 66678888888888775 79987 8999999988 42234468889999999999
Q ss_pred cCChhHHHHHHHhcC--CC-Ch-HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH-HhccCChhhH
Q 037178 146 CGFPLDSRRVFDSLK--TR-NL-FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA-CGGIADVGFG 219 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~--~~-~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~-~~~~g~~~~a 219 (311)
.|++++|..+|++.. .| +. ..|...+..+.+.|+.++|.++|++..+ . .|+ ...|...... +...|+.++|
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 999999999999875 34 33 5899999999999999999999999876 3 333 2223222212 3368999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-N----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..+|+...+.. +-+...|..+++.+.+.|+.++|..+|++..+ | + ...|...+......|+.+.+.++.+++
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988764 45689999999999999999999999998864 2 2 338989999999999999999999988
No 66
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=2.5e-10 Score=94.32 Aligned_cols=212 Identities=9% Similarity=-0.062 Sum_probs=142.9
Q ss_pred CHHHHHHHHHhhcc--------C-CCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc------CC-CchhhHHHHHHHH
Q 037178 79 SLNKALSLLQENLH--------N-ADLKEATGVLLQACGHEKDIEIGKRVHELVSAST------QF-SNDFIINTRLITM 142 (311)
Q Consensus 79 ~~~~a~~~~~~m~~--------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------g~-~~~~~~~~~ll~~ 142 (311)
++++|+.+|++..+ . +....++..+...+...|++++|...++++. +. +- +....++..+...
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHH
Confidence 55555555555544 1 2235567788888888999999998888877 33 22 3345678888899
Q ss_pred HHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcC------CCCC-CcchHH
Q 037178 143 YSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDT------ELKP-DNFTFP 204 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~p-~~~t~~ 204 (311)
|...|++++|.+.|++..+ + ...+|..+...|...|++++|...|++... . +-.| ...++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-IYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSCTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHH
Confidence 9999999999888887542 1 346788889999999999999999988865 2 1123 245788
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHh-------CCCC-cHHHHHHHHHHHHhcC------CHHHHHHHHhhCCCC---Chh
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKM-------GLIG-DVFVSNALIAMYGKCA------FVEEMVKLFEVMPER---NLV 267 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~---~~~ 267 (311)
.+...+...|++++|..++++..+. ...+ ....+..+...+...+ .+.++...++..... ...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888999999999999999888764 1122 2333444444443322 244445555554432 235
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 268 SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 268 ~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+|..+...|...|++++|.+++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888999999999999999999887
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=5e-10 Score=105.33 Aligned_cols=161 Identities=8% Similarity=-0.037 Sum_probs=141.8
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+..+|+.|-..+.+.| ++++|++.|++..+ .+-+..+|..+..++.+.|++++|...|++.. +.. +-+...|+.|.
T Consensus 8 ~a~al~nLG~~~~~~G-~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI-RIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHH
Confidence 3457899999999999 99999999999999 55567889999999999999999999999998 654 34577889999
Q ss_pred HHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCCh
Q 037178 141 TMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADV 216 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~ 216 (311)
.+|.+.|++++|.+.|++.. ..+..+|+.+..+|.+.|++++|++.|++..+ +.|+ ...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999865 34778999999999999999999999999877 5675 56889999999999999
Q ss_pred hhHHHHHHHHHH
Q 037178 217 GFGSGVHGMAAK 228 (311)
Q Consensus 217 ~~a~~~~~~m~~ 228 (311)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.18 E-value=3.4e-09 Score=103.43 Aligned_cols=203 Identities=9% Similarity=-0.002 Sum_probs=143.4
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
+..+|..+-.++...| ++++|++.|.+. .|...|..++.+|.+.|++++|.+.+...+ +.. ++....+.+..
T Consensus 1104 ~p~vWsqLAKAql~~G-~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCC-CHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHHH
Confidence 3456888888888888 999999988775 367788888999999999999999988877 443 44334445888
Q ss_pred HHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHH
Q 037178 142 MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSG 221 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 221 (311)
+|++.+++++..... ..++...|..+...|...|++++|..+|.... .|..+...+++.|++++|.+
T Consensus 1176 aYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHH
Confidence 888888888644443 45566777788888888888888888887752 58888888888888888888
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 222 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+++. .+..+|..+-.+|...|++..|...... ...+...+..++..|-+.|.+++|+.+++.-
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87654 2345555555555555555555555543 2233444555666666666666666666544
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=5e-09 Score=91.18 Aligned_cols=221 Identities=8% Similarity=-0.107 Sum_probs=171.7
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc---C-CCc-hhhHHHH
Q 037178 71 TTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAST---Q-FSN-DFIINTR 138 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---g-~~~-~~~~~~~ 138 (311)
..+...| ++++|+..|++... ..+| ..++..+...+...|+++.|...+++..+-. + ..+ ...+++.
T Consensus 109 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 109 MYEFDQK-EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHC-CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456788 99999999999887 2233 3467788888999999999999999877221 1 111 2557888
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCCCcchHHHH
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKPDNFTFPCV 206 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p~~~t~~~l 206 (311)
+..+|...|++++|.+.|++..+ + ...+++.+...|...|++++|.+.|++...- .+......++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 99999999999999999887542 1 2357889999999999999999999887540 1222235678888
Q ss_pred HHHHhccCChhhHHHHHHHHHHhC----CCCcHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCC-C-hhhHHHHHHHHH
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMG----LIGDVFVSNALIAMYGKCAF---VEEMVKLFEVMPER-N-LVSWNSIICGFS 277 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-~-~~~y~~li~~~~ 277 (311)
...+.+.|++++|...+++..+.. -+.....+..+-..|...|+ +++|...+++.... + ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999988753 22334566777778888888 99999999986542 2 246778999999
Q ss_pred hCCCcchHHHHHHhh
Q 037178 278 ENGFSCESFDLLIKM 292 (311)
Q Consensus 278 ~~g~~~~a~~l~~~m 292 (311)
..|++++|.+.|++.
T Consensus 348 ~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 348 SSCHFEQAAAFYRKV 362 (378)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 999999999999887
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=4.7e-10 Score=92.65 Aligned_cols=155 Identities=9% Similarity=-0.014 Sum_probs=122.3
Q ss_pred ccCCChhHHHHHHHHHHhh------cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHH
Q 037178 108 GHEKDIEIGKRVHELVSAS------TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNAL 170 (311)
Q Consensus 108 ~~~~~~~~a~~~~~~m~~~------~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~l 170 (311)
...|++++|...+++..+. ...+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888887777621 12233567888999999999999999999987641 1 34679999
Q ss_pred HHHHHhCCChhhHHHHHHHhhhcC------CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh------C-CCCcHH
Q 037178 171 VSGFTKNELYTDVLSIFVELSSDT------ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM------G-LIGDVF 236 (311)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~ 236 (311)
...|...|++++|...|++... . .-.| ...++..+...+...|++++|...+++..+. + .+....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999865 2 1123 3567888999999999999999999998876 2 122467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
++..+...|.+.|++++|.+.+++..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999999988763
No 71
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.11 E-value=3.1e-08 Score=89.26 Aligned_cols=222 Identities=9% Similarity=-0.019 Sum_probs=140.1
Q ss_pred CcccHHHHHHHHHh----cCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchh
Q 037178 62 QGLHFLQEITTLCE----ESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDF 133 (311)
Q Consensus 62 ~~~~~~~li~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~ 133 (311)
+...+..|-..|.. .+ ++++|+..|++..+ ..+...+..+...+.. .++.++|...|+... +.| +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAAL-KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CH
Confidence 44556666666666 66 77777777776655 1244455555555554 567777777777766 443 34
Q ss_pred hHHHHHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHH
Q 037178 134 IINTRLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFP 204 (311)
Q Consensus 134 ~~~~~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~ 204 (311)
..+..|-..|.. .++.++|.+.|++..+ .+...+..+...|.. .++.++|.+.|++..+ .| +...+.
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~ 223 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQL 223 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHH
Confidence 445556666665 5677777777766542 356666666666666 6777777777777665 33 344555
Q ss_pred HHHHHHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 037178 205 CVIKACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICG 275 (311)
Q Consensus 205 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~ 275 (311)
.+...+.. .++.++|.++++...+.| +...+..+...|.. .++.++|.+.|++..+ -+...+..+-..
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554 567777777777766654 34555566666666 6777777777777654 345566667777
Q ss_pred HHhC-----CCcchHHHHHHhhhhccCC
Q 037178 276 FSEN-----GFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 276 ~~~~-----g~~~~a~~l~~~m~~~~~g 298 (311)
|... ++.++|.+++++. .+.|
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a--~~~~ 326 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKS--AEQG 326 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHH--HHTT
T ss_pred HHcCCCCCcCCHHHHHHHHHHH--HhcC
Confidence 7776 7777777777777 4443
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=1.1e-08 Score=82.19 Aligned_cols=188 Identities=7% Similarity=-0.096 Sum_probs=143.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CC-CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NA-DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
|...|...-..+...| ++++|+..|++... .+ ++...+..+..++...|++++|...++... +.. +.+..++..+
T Consensus 6 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKN-YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhC-cchHHHHHHH
Confidence 3456778888899999 99999999999998 55 788888888889999999999999999998 554 4467788889
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--C-Ch-------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC---cchHHHH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT--R-NL-------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD---NFTFPCV 206 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~--~-~~-------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~t~~~l 206 (311)
..+|.+.|++++|...|++..+ | +. ..|..+...+...|++++|.+.|++..+ ..|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 9999999999999999998752 3 44 4588888899999999999999999976 4665 3456666
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..++...| ..+++.+...+ ..+...|..... ...+.+++|...|++..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 66665544 33444444443 223444444432 345668889888888764
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=3e-08 Score=85.84 Aligned_cols=219 Identities=8% Similarity=-0.070 Sum_probs=125.4
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCCCh-h----hHHHHHHhcccCCChhHHHHHHHHHHhhc----CCC-chhhHHHHH
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NADLK-E----ATGVLLQACGHEKDIEIGKRVHELVSAST----QFS-NDFIINTRL 139 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~-~~~~~~~~l 139 (311)
..+...| ++++|...+++... .+++. . .+..+...+...|++++|...+++.. .. |.. ....+++.+
T Consensus 22 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 22 QVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE-QMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHH
Confidence 3444566 77777777777665 32221 1 34444555666777777777777665 21 100 012234556
Q ss_pred HHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC--CC--CcchHH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTEL--KP--DNFTFP 204 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~t~~ 204 (311)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++... ..- .+ ...++.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHHHHHH
Confidence 6667777777777777665431 1 123455666677777777777777776543 111 11 123455
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCc-HHHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCh-------hhHHH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGD-VFVSN-----ALIAMYGKCAFVEEMVKLFEVMPERNL-------VSWNS 271 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~y~~ 271 (311)
.+...+...|++++|...+++..+..-.++ ...+. ..+..+...|++++|...+++..+++. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 666667777777777777777654311111 01111 223346677777777777777765321 13456
Q ss_pred HHHHHHhCCCcchHHHHHHhh
Q 037178 272 IICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 272 li~~~~~~g~~~~a~~l~~~m 292 (311)
+...+...|++++|.+.+++.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666777777777777777665
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=3.8e-09 Score=76.69 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
|..+...+...| ++++|..+|+++.. .+.+...+..+...+...|++++|...++++. +.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHC-CCchHHHHHHHHHHH
Confidence 455555666666 66666666666655 43445555555555556666666666666655 332 223444445555555
Q ss_pred hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
+.|++++|.+.|+++. ..+...|..+...+.+.|++++|...|+++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555555555555443 1234445555555555555555555555543
No 75
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.06 E-value=2.3e-08 Score=97.72 Aligned_cols=196 Identities=8% Similarity=0.008 Sum_probs=152.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSL 145 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~ 145 (311)
...+-..+...| .+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+-.++.+
T Consensus 1052 ~~eIA~Iai~lg-lyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNE-LFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHh
Confidence 344566777888 99999999998653 2223333433 5678888888887653 36677789999999
Q ss_pred cCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHH
Q 037178 146 CGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGM 225 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 225 (311)
.|++++|.+.|.+- .|...|..++.++.+.|++++|.+.+...++ . .++....+.++.+|++.+++++...+..
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~LafaYAKl~rleele~fI~- 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN- 1191 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHHHHHHhhcCHHHHHHHHh-
Confidence 99999999999764 6777888999999999999999999987765 3 3554445568999999988886554431
Q ss_pred HHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 226 AAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 226 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.++...|..+.+.|...|++++|...|... ..|..+..+|++.|++++|.+.+++.
T Consensus 1192 ------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1192 ------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 345566777888999999999999999985 47888999999999999999988877
No 76
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.05 E-value=5.8e-08 Score=87.53 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=117.1
Q ss_pred CcccHHHHHHHHHh----cCCCHHHHHHHHHhhccCCCChhhHHHHHHhccc----CCChhHHHHHHHHHHhhcCCCchh
Q 037178 62 QGLHFLQEITTLCE----ESKSLNKALSLLQENLHNADLKEATGVLLQACGH----EKDIEIGKRVHELVSASTQFSNDF 133 (311)
Q Consensus 62 ~~~~~~~li~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~ 133 (311)
+...+..+-..|.. .+ ++++|+..|++..+. .+...+..+...+.. .++.++|...|+... +.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CH
Confidence 33444445555555 55 666666666655441 234444444444444 556666666666655 433 33
Q ss_pred hHHHHHHHHHHh----cCChhHHHHHHHhcCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHH
Q 037178 134 IINTRLITMYSL----CGFPLDSRRVFDSLKT-RNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFP 204 (311)
Q Consensus 134 ~~~~~ll~~~~~----~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~ 204 (311)
..+..|-..|.. .+++++|.+.|++..+ .+...+..+...|.. .++.++|.+.|++..+ .| +...+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a~~ 187 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHH
Confidence 344445555555 5566666666655442 244555555555554 5566666666666554 32 344455
Q ss_pred HHHHHHhc----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 037178 205 CVIKACGG----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE-RNLVSWNSIICG 275 (311)
Q Consensus 205 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~y~~li~~ 275 (311)
.+-..+.. .++.++|.+++....+.| +...+..+...|.. .+++++|.+.|++..+ .+...+..+-..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544 556666666666655544 34455555555554 5566666666665543 334445555555
Q ss_pred HHh----CCCcchHHHHHHhh
Q 037178 276 FSE----NGFSCESFDLLIKM 292 (311)
Q Consensus 276 ~~~----~g~~~~a~~l~~~m 292 (311)
|.. .++.++|.++|++.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHH
Confidence 555 55666666666655
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=4.9e-09 Score=88.03 Aligned_cols=196 Identities=7% Similarity=-0.066 Sum_probs=133.5
Q ss_pred HHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCch-hhHHHHHHHHHHhcCChhHHHH
Q 037178 80 LNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAST----QFSND-FIINTRLITMYSLCGFPLDSRR 154 (311)
Q Consensus 80 ~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~ 154 (311)
+++|...|++. ...+...|++++|...|++.. +. |-.++ ..+|+.+..+|.+.|++++|..
T Consensus 33 ~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666554 334456677777777777665 32 21122 4577777888888888888877
Q ss_pred HHHhcCC-----CC----hHHHHHHHHHHHhC-CChhhHHHHHHHhhhcCCCCCC-------cchHHHHHHHHhccCChh
Q 037178 155 VFDSLKT-----RN----LFQWNALVSGFTKN-ELYTDVLSIFVELSSDTELKPD-------NFTFPCVIKACGGIADVG 217 (311)
Q Consensus 155 l~~~m~~-----~~----~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~-------~~t~~~li~~~~~~g~~~ 217 (311)
.|++..+ .+ ..+|+.+...|... |++++|+..|++..+ +.|+ ..++..+...+.+.|+++
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE---WYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---HHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 7766542 11 35688888888886 999999998888754 1121 246778888899999999
Q ss_pred hHHHHHHHHHHhCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh------hHHHHHHHHH--hCCC
Q 037178 218 FGSGVHGMAAKMGLIGDV------FVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLV------SWNSIICGFS--ENGF 281 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~------~y~~li~~~~--~~g~ 281 (311)
+|...+++..+....... ..|..+..+|...|++++|...|++..+ |+.. .+..++.+|. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999988876433222 2567788888999999999999998875 3221 2444566664 3567
Q ss_pred cchHHHHHHhh
Q 037178 282 SCESFDLLIKM 292 (311)
Q Consensus 282 ~~~a~~l~~~m 292 (311)
+++|++.|+++
T Consensus 256 ~~~A~~~~~~~ 266 (292)
T 1qqe_A 256 LSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccC
Confidence 88888888776
No 78
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=4.7e-09 Score=76.21 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY 245 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 245 (311)
.|..+...+...|++++|..+|+++.. .. ..+...+..+...+...|++++|..+++++.+.+ +.+...+..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 345555555566666666666666544 21 1233445555556666666666666666665554 33455566666666
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 246 GKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+.|++++|.+.++++.+ .+..+|..+...+.+.|++++|.+.++++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 666666666666665542 23455666666666666777776666666
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=2.5e-08 Score=83.68 Aligned_cols=198 Identities=9% Similarity=-0.101 Sum_probs=150.5
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc----C-CC--ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC---Cc--h
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH----N-AD--LKEATGVLLQACGHEKDIEIGKRVHELVSASTQF---SN--D 132 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~----~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~---~~--~ 132 (311)
.|+.....|...| ++++|...|++... . .+ ...+|+.+...+...|++++|...+++.. +... .+ -
T Consensus 39 ~~~~a~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~ 116 (292)
T 1qqe_A 39 LCVQAATIYRLRK-ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHTT-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHH
Confidence 5777788888999 99999999998877 1 11 14678899999999999999999999887 3211 11 1
Q ss_pred hhHHHHHHHHHHhc-CChhHHHHHHHhcCC--C---C----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc-
Q 037178 133 FIINTRLITMYSLC-GFPLDSRRVFDSLKT--R---N----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF- 201 (311)
Q Consensus 133 ~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~--~---~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~- 201 (311)
..+++.+...|... |++++|...|++..+ | + ..+|+.+...+.+.|++++|...|++... ........
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~ 195 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK-SSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTSSCTTTG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcCCccc
Confidence 45788899999996 999999999988652 1 1 35789999999999999999999999877 33222221
Q ss_pred -----hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc------HHHHHHHHHHHH--hcCCHHHHHHHHhhCCCCChh
Q 037178 202 -----TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD------VFVSNALIAMYG--KCAFVEEMVKLFEVMPERNLV 267 (311)
Q Consensus 202 -----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~ 267 (311)
.|..+..++...|++++|...+++..+. .|+ ...+..++..|. ..+++++|.+.|+++.+.|..
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 4677788889999999999999987653 222 223455666665 457899999999999876553
No 80
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=3.4e-08 Score=88.15 Aligned_cols=225 Identities=10% Similarity=-0.041 Sum_probs=137.5
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc---------CCC-ChhhHHHHHHhcccCCChhHHHHHHHHHHhhc----
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH---------NAD-LKEATGVLLQACGHEKDIEIGKRVHELVSAST---- 127 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---- 127 (311)
.+..||.|-..+...| ++++|++.|++..+ ..| ...+|+.+..+|...|++++|...+++.. +.
T Consensus 50 ~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~-~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK-HVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhHhc
Confidence 3456888888999999 99999999988754 122 34678888888999999999999888776 31
Q ss_pred -C-CC-chhhHHHHHHHHHHhc--CChhHHHHHHHhcC--CC-ChHHHHHHHHH---HHhCCChhhHHHHHHHhhhcCCC
Q 037178 128 -Q-FS-NDFIINTRLITMYSLC--GFPLDSRRVFDSLK--TR-NLFQWNALVSG---FTKNELYTDVLSIFVELSSDTEL 196 (311)
Q Consensus 128 -g-~~-~~~~~~~~ll~~~~~~--g~~~~A~~l~~~m~--~~-~~~~y~~li~~---~~~~g~~~~a~~~~~~m~~~~~~ 196 (311)
+ .. ....+++.+..++.+. +++++|...|++.. .| +...+..+..+ +...|+.++|++.+++..+ +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 11 1234555555555554 46888999888754 23 44444444333 3345666667776666544 2
Q ss_pred CCC-cchHHHHHHHHh----ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 037178 197 KPD-NFTFPCVIKACG----GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-------- 263 (311)
Q Consensus 197 ~p~-~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 263 (311)
.|+ ...+..+...+. ..|+.++|.+.+++..+.. +.+..++..+...|.+.|++++|...+++..+
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 333 223333332222 2345566666666655554 33455566666666666666666665554331
Q ss_pred ------------------------------------------------CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 264 ------------------------------------------------RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 264 ------------------------------------------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+..+|..+...|...|++++|.+.|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 12334556667777888888888888887
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.00 E-value=1.1e-08 Score=82.28 Aligned_cols=187 Identities=7% Similarity=-0.089 Sum_probs=131.5
Q ss_pred CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHH
Q 037178 95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALV 171 (311)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li 171 (311)
.|+..+......+...|++++|...|+... +..-+++...+..+..+|.+.|++++|.+.|++..+ | +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456677777888888899999999999888 655335666666688888888999999888887642 3 556788888
Q ss_pred HHHHhCCChhhHHHHHHHhhhcCCCCCCc--------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--cHHHHHHH
Q 037178 172 SGFTKNELYTDVLSIFVELSSDTELKPDN--------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG--DVFVSNAL 241 (311)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l 241 (311)
..|...|++++|...|++..+ ..|+. ..|..+-..+...|++++|.+.++...+.. +- +...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 888889999999999888866 34442 346666777788888888888888877653 33 35677777
Q ss_pred HHHHHhcCCH--HHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 242 IAMYGKCAFV--EEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 242 i~~~~~~g~~--~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...|...|+. ++|. .+...+...|.... ....+.+++|...+++.
T Consensus 160 ~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a 206 (228)
T 4i17_A 160 GVLFYNNGADVLRKAT----PLASSNKEKYASEK--AKADAAFKKAVDYLGEA 206 (228)
T ss_dssp HHHHHHHHHHHHHHHG----GGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 7777665543 2222 12223344443333 22345578899999888
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=1.1e-08 Score=88.52 Aligned_cols=226 Identities=10% Similarity=-0.083 Sum_probs=165.7
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhh---cCCC--c-
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH---NADLK----EATGVLLQACGHEKDIEIGKRVHELVSAS---TQFS--N- 131 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~--~- 131 (311)
.++.+-..+...| ++++|...+++... ...+. .++..+...+...|++++|...+++..+. .+.. |
T Consensus 55 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 55 ATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 4667777888899 99999999999887 22222 23556677788999999999999987722 1222 3
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--C------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-ch
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT--R------NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FT 202 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t 202 (311)
....+..+...|...|++++|...+++..+ + ...+|..+...+...|++++|...+++... ..-.++. ..
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~-~~~~~~~~~~ 212 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN-LLGNGKYHSD 212 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhccCcchh
Confidence 345667788899999999999999987531 1 235688889999999999999999998765 2112221 12
Q ss_pred HH-----HHHHHHhccCChhhHHHHHHHHHHhCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C---Ch
Q 037178 203 FP-----CVIKACGGIADVGFGSGVHGMAAKMGLIG---DVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----R---NL 266 (311)
Q Consensus 203 ~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~---~~ 266 (311)
+. ..+..+...|++++|...+....+....+ ....+..+...+...|++++|...+++..+ . +.
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 213 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 22 23344778999999999998876543211 133567888999999999999999988753 1 12
Q ss_pred -hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 267 -VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 267 -~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.++..+..++...|+.++|...+++.
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 26667788899999999999999887
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.6e-08 Score=93.53 Aligned_cols=168 Identities=9% Similarity=-0.079 Sum_probs=139.4
Q ss_pred ccCCChhHHHHHHHHHHhh-------cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhC
Q 037178 108 GHEKDIEIGKRVHELVSAS-------TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKN 177 (311)
Q Consensus 108 ~~~~~~~~a~~~~~~m~~~-------~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~ 177 (311)
...|++++|.+.+++.. . ...+.+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAAR-HGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHH-TC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999886 2 22244567788899999999999999999998763 4778999999999999
Q ss_pred CChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178 178 ELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (311)
|++++|.+.|++..+ ..|+ ...|..+..++.+.|++++ .+.+++..+.. +-+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999876 4564 5678889999999999999 99999998876 5578899999999999999999999
Q ss_pred HHhhCCC--CC-hhhHHHHHHHHHhCCC
Q 037178 257 LFEVMPE--RN-LVSWNSIICGFSENGF 281 (311)
Q Consensus 257 ~~~~m~~--~~-~~~y~~li~~~~~~g~ 281 (311)
.|++..+ |+ ...|..+..++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999986 43 4577777788766555
No 84
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.94 E-value=5e-08 Score=88.84 Aligned_cols=195 Identities=7% Similarity=-0.048 Sum_probs=154.5
Q ss_pred CcccHHHHHHHHHh-------cCCCHH-------HHHHHHHhhcc-CCC-ChhhHHHHHHhcccCCChhHHHHHHHHHHh
Q 037178 62 QGLHFLQEITTLCE-------ESKSLN-------KALSLLQENLH-NAD-LKEATGVLLQACGHEKDIEIGKRVHELVSA 125 (311)
Q Consensus 62 ~~~~~~~li~~~~~-------~g~~~~-------~a~~~~~~m~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 125 (311)
+...|......+.+ .| +++ +|..+|++..+ ..| +...|..++..+.+.|++++|..+|+.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al- 348 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL- 348 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Confidence 45567777777765 68 877 99999999997 545 57788899999999999999999999998
Q ss_pred hcCCCch--hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHH-HHHhCCChhhHHHHHHHhhhcCCCCC-
Q 037178 126 STQFSND--FIINTRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVS-GFTKNELYTDVLSIFVELSSDTELKP- 198 (311)
Q Consensus 126 ~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~p- 198 (311)
+. .|+ ..+|..++..+.+.|++++|.++|++..+ | +...|..... .+...|+.++|..+|++..+ ..|
T Consensus 349 ~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---~~p~ 423 (530)
T 2ooe_A 349 AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGD 423 (530)
T ss_dssp HS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHTT
T ss_pred Cc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH---HCCC
Confidence 54 343 35899999999999999999999998754 2 2233332222 23468999999999999876 235
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 199 DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG-LIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 199 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+...|..++..+.+.|+.++|..+|++....+ ..|+ ..+|...+....+.|+.+.+.++++++.+
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788899999999999999999999998874 2332 45888889999999999999999988764
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.8e-08 Score=94.62 Aligned_cols=182 Identities=10% Similarity=-0.079 Sum_probs=150.2
Q ss_pred HhcCCCHHHHHHHHHhhc--------c-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 74 CEESKSLNKALSLLQENL--------H-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~--------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
...| ++++|++.+++.. + .+.+...+..+..++...|++++|...++++. +.. +.+...|..+..+|.
T Consensus 402 ~~~~-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLS-QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA-ERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTC-CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHH-CCCHHHHHHHHHHHH
T ss_pred cccc-CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh-ccC-cchHHHHHHHHHHHH
Confidence 7788 9999999999998 5 45566788889999999999999999999998 544 456778888999999
Q ss_pred hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHH
Q 037178 145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~ 220 (311)
+.|++++|.+.|++.. ..+...|..+..++.+.|++++ .+.|++..+ ..|+ ...|..+..++.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999865 2377889999999999999999 999999876 4454 567889999999999999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCC--------HHHHHHHHhhCCC
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAF--------VEEMVKLFEVMPE 263 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~ 263 (311)
+.+++..+.. +-+...+..+..+|...|+ +++|.+.+..+..
T Consensus 555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 9999887654 3356788888888766444 7788888887763
No 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.92 E-value=2.3e-08 Score=89.32 Aligned_cols=105 Identities=6% Similarity=-0.153 Sum_probs=59.2
Q ss_pred cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcH--HHHHHHHH-HHHhcCCHHHHHHHHhhCCC-------------
Q 037178 200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV--FVSNALIA-MYGKCAFVEEMVKLFEVMPE------------- 263 (311)
Q Consensus 200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~------------- 263 (311)
..++..+...+...|++++|...|++..+....+.. ..+..+.. .+...|+.++|...|++..+
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 455667777888889999999999988876544332 22333332 23467888888888775431
Q ss_pred --------------CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccC-CCCCCceeE
Q 037178 264 --------------RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEE-GFIPDVITV 306 (311)
Q Consensus 264 --------------~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~-g~~P~~~t~ 306 (311)
.+..+|+.+-..|...|+.++|.+.|++. .+. ...|+..++
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA--Le~~~~~p~a~~~ 469 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG--LESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCCCCcHhhc
Confidence 24578889999999999999999999998 443 355665554
No 87
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=6e-08 Score=74.80 Aligned_cols=153 Identities=10% Similarity=-0.065 Sum_probs=117.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHH-Hh
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKA-CG 211 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~-~~ 211 (311)
+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...|++... ..|+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 34466778889999999999998874 3678899999999999999999999998865 33433222221111 22
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHHhCCCcchHH
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN---LVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~---~~~y~~li~~~~~~g~~~~a~ 286 (311)
..++..++...++...+.. +-+...+..+...|...|++++|...|++..+ |+ ...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 3334455788888888765 44688999999999999999999999998875 43 458899999999999999999
Q ss_pred HHHHhh
Q 037178 287 DLLIKM 292 (311)
Q Consensus 287 ~l~~~m 292 (311)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=5e-08 Score=80.16 Aligned_cols=164 Identities=9% Similarity=0.014 Sum_probs=106.1
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCC---hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCchhh
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLH-NADL---KEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSNDFI 134 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~ 134 (311)
.+...+-.+...+.+.| ++++|+..|+++.. .+.+ ...+..+..++...|++++|...|+... +.. -+....
T Consensus 13 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQG-KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI-QIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTT-CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHCCCCchhHH
Confidence 34455666777788888 99999999998888 3333 5667777888888899999999998888 432 112244
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHhcCC--C-ChHHH-----------------HHHHHHHHhCCChhhHHHH
Q 037178 135 INTRLITMYSL--------CGFPLDSRRVFDSLKT--R-NLFQW-----------------NALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 135 ~~~~ll~~~~~--------~g~~~~A~~l~~~m~~--~-~~~~y-----------------~~li~~~~~~g~~~~a~~~ 186 (311)
.+..+..++.+ .|++++|...|++..+ | +...+ ..+...|.+.|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56667777777 7888888888877652 3 22222 3445566666666666666
Q ss_pred HHHhhhcCCCCCC----cchHHHHHHHHhcc----------CChhhHHHHHHHHHHh
Q 037178 187 FVELSSDTELKPD----NFTFPCVIKACGGI----------ADVGFGSGVHGMAAKM 229 (311)
Q Consensus 187 ~~~m~~~~~~~p~----~~t~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 229 (311)
|++..+ ..|+ ...+..+..++... |++++|...++.+.+.
T Consensus 171 ~~~~l~---~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFD---AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHH---HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 666654 1232 12344555555544 5566666666666554
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=7.3e-08 Score=80.62 Aligned_cols=159 Identities=8% Similarity=-0.139 Sum_probs=127.7
Q ss_pred CchhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHH-H
Q 037178 130 SNDFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFP-C 205 (311)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~-~ 205 (311)
+.+...+..+...+.+.|++++|...|++.. .| +...+..+...+.+.|++++|...+++... ..|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 5566667778888889999999999999875 33 677889999999999999999999998865 345543222 2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHHhCC
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN---LVSWNSIICGFSENG 280 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~---~~~y~~li~~~~~~g 280 (311)
....+...++.++|...+++..+.. +.+...+..+...|...|++++|...|++..+ |+ ...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2233667788888999998888875 56788999999999999999999999998874 43 567999999999999
Q ss_pred CcchHHHHHHhh
Q 037178 281 FSCESFDLLIKM 292 (311)
Q Consensus 281 ~~~~a~~l~~~m 292 (311)
+.++|...+++-
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 999999888775
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=4.1e-08 Score=82.16 Aligned_cols=168 Identities=11% Similarity=-0.085 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
+...+++.. ..+ .++..+...+..++...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566777766 444 44455556788889999999999999988632 35567888999999999999999999999
Q ss_pred hhcCCCCC-----CcchHHHHHHHHh--c--cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 191 SSDTELKP-----DNFTFPCVIKACG--G--IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 191 ~~~~~~~p-----~~~t~~~li~~~~--~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
.+ ..| +..+...+..++. . .++..+|..+|+++.+. .|+...-..++.++.+.|++++|++.++.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77 456 3556666666632 2 33899999999998665 344334445555889999999999999865
Q ss_pred CC------------C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 262 PE------------R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 262 ~~------------~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.+ | |..+.-.+|......|+ +|.++++++
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 43 2 55666455555555565 888999988
No 91
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.85 E-value=5.5e-08 Score=84.63 Aligned_cols=189 Identities=9% Similarity=-0.073 Sum_probs=146.2
Q ss_pred HHHhcccCCChhHHHHHHHHHHhhc----CCCc-hhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----C-----ChHHH
Q 037178 103 LLQACGHEKDIEIGKRVHELVSAST----QFSN-DFIINTRLITMYSLCGFPLDSRRVFDSLKT-----R-----NLFQW 167 (311)
Q Consensus 103 ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~-----~~~~y 167 (311)
....+...|++++|...+++.. +. +-.+ ...++..+...|...|++++|...+++..+ + ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4556678999999999999988 43 1112 346788899999999999999988877542 1 23578
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHh----CC-CCcHHHH
Q 037178 168 NALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKM----GL-IGDVFVS 238 (311)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~ 238 (311)
+.+...|...|++++|...|++..+...-.++ ..++..+...+...|++++|.+.+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 99999999999999999999887541111111 247888999999999999999999988773 33 4457889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----CCh---hhHHHHHHHHHhCCC---cchHHHHHHhh
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMPE-----RNL---VSWNSIICGFSENGF---SCESFDLLIKM 292 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~-----~~~---~~y~~li~~~~~~g~---~~~a~~l~~~m 292 (311)
..+...|.+.|++++|.+.+++..+ .|. ..++.+-..|...|+ .++|..++++.
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999998764 222 235677788888888 77777777665
No 92
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.82 E-value=1.8e-07 Score=87.21 Aligned_cols=207 Identities=12% Similarity=0.017 Sum_probs=164.3
Q ss_pred HHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHH-HHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178 81 NKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGK-RVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS 158 (311)
Q Consensus 81 ~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 158 (311)
+.+..+|++... .+-+...|......+...|+.++|. .+++... .. ++.+...|-.++...-+.|++++|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-QC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445678888888 7778888988888888889999996 9999998 53 355667788888899999999999999998
Q ss_pred cCC-------------CC------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-C-CCCCcchHHHHHHHHh
Q 037178 159 LKT-------------RN------------LFQWNALVSGFTKNELYTDVLSIFVELSSDT-E-LKPDNFTFPCVIKACG 211 (311)
Q Consensus 159 m~~-------------~~------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~-~~p~~~t~~~li~~~~ 211 (311)
+.+ |+ ...|...+....+.|..+.|..+|.+..+ . + ..+..+...+.+.-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHh
Confidence 753 31 23688888888888999999999999987 3 1 1222233333333222
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCCcchH
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R----NLVSWNSIICGFSENGFSCES 285 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----~~~~y~~li~~~~~~g~~~~a 285 (311)
.++.+.|.++|+...+. ++-+...+...++.....|+.+.|..+|+...+ + ....|...+.--.+.|+.+.+
T Consensus 483 -~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 -SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp -TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred -CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35699999999999887 455777888999999999999999999999886 3 235899999999999999999
Q ss_pred HHHHHhh
Q 037178 286 FDLLIKM 292 (311)
Q Consensus 286 ~~l~~~m 292 (311)
.++.+++
T Consensus 561 ~~v~~R~ 567 (679)
T 4e6h_A 561 RTLEKRF 567 (679)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999999
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=8.5e-08 Score=73.92 Aligned_cols=159 Identities=8% Similarity=0.038 Sum_probs=110.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH-
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM- 142 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~- 142 (311)
.+..+...+.+.| ++++|...|++..+ .+.+...+..+...+...|++++|...++.+. ... |+...+..+...
T Consensus 8 ~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~-~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQG-EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP-LEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTT-CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC-GGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh-hcc--CChHHHHHHHHHH
Confidence 4556677788888 99999999998888 55667788888888889999999999988877 433 233333222111
Q ss_pred HHhcCChhHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhh
Q 037178 143 YSLCGFPLDSRRVFDSLK--TR-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~--~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~ 218 (311)
+.+.+...+|...|++.. .| +...+..+...+...|++++|...|++..+ ..-.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-VNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233344666676654 23 567788888888888888888888888766 32221 24467778888888888888
Q ss_pred HHHHHHHHHH
Q 037178 219 GSGVHGMAAK 228 (311)
Q Consensus 219 a~~~~~~m~~ 228 (311)
|...+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776543
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=8.2e-08 Score=80.35 Aligned_cols=175 Identities=11% Similarity=-0.004 Sum_probs=132.8
Q ss_pred HHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCC-CchhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 83 ALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQF-SNDFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 83 a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
|+..|++... ..++..++..+..++...|++++|.+++.+.. ..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6677777766 45667777788889999999999999999987 5442 2477888899999999999999999999987
Q ss_pred C--C-----ChHHHHHHHHHHH----hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 161 T--R-----NLFQWNALVSGFT----KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 161 ~--~-----~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
+ | +-.+...++.+++ ..++..+|+.+|+++.+ -.|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 4 1345555555532 34599999999999966 3355444556666899999999999999977654
Q ss_pred -----CC----CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 230 -----GL----IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 230 -----g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+. +-|..+.-.+|..+...|+ +|.+++.++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 11 4467777666666666787 88899888875
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.7e-07 Score=78.33 Aligned_cols=163 Identities=6% Similarity=-0.097 Sum_probs=130.9
Q ss_pred CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC--CChHHH-HH
Q 037178 93 NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT--RNLFQW-NA 169 (311)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y-~~ 169 (311)
.+.+...+..+...+.+.|++++|...++++. +.. +-+...+..+...|.+.|++++|...|++... |+.... ..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAW-QLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHH-HhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 34556677788888889999999999999998 544 44567788899999999999999999999874 544332 23
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHh
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGK 247 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~ 247 (311)
....+.+.++.++|...+++... ..|+ ...+..+...+...|++++|...+.++.+..-.. +...+..+...|..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 33346677888999999998876 3464 5678889999999999999999999999875322 37889999999999
Q ss_pred cCCHHHHHHHHhh
Q 037178 248 CAFVEEMVKLFEV 260 (311)
Q Consensus 248 ~g~~~~A~~~~~~ 260 (311)
.|+.++|...|++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 9999999888875
No 96
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.79 E-value=2.1e-07 Score=80.85 Aligned_cols=195 Identities=10% Similarity=-0.024 Sum_probs=146.7
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC-----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCC
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLH---NADL-----KEATGVLLQACGHEKDIEIGKRVHELVSAST----QFS 130 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~ 130 (311)
..+|..+-..|...| ++++|+..+++... ..++ ..+++.+...+...|++++|...+++.. +. +-.
T Consensus 141 a~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~ 218 (378)
T 3q15_A 141 AEFHFKVAEAYYHMK-QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL-ELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCH
T ss_pred HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHcCCH
Confidence 356888889999999 99999999999887 2222 4467788889999999999999999877 32 211
Q ss_pred -chhhHHHHHHHHHHhcCChhHHHHHHHhcCC-------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--
Q 037178 131 -NDFIINTRLITMYSLCGFPLDSRRVFDSLKT-------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-- 199 (311)
Q Consensus 131 -~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-- 199 (311)
....+++.+..+|...|++++|...|++..+ | ...++..+...+.+.|++++|...+++..+...-..+
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1245778899999999999999999987653 2 3567889999999999999999999997651211112
Q ss_pred -cchHHHHHHHHhccCC---hhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 200 -NFTFPCVIKACGGIAD---VGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 200 -~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
...+..+-..+...|+ +++|...++. .+..+ ....+..+...|.+.|++++|.+.|++..
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2345555566677777 6666666554 33333 34577789999999999999999988643
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.77 E-value=1e-07 Score=78.32 Aligned_cols=164 Identities=7% Similarity=-0.125 Sum_probs=124.3
Q ss_pred CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch---hhHHHHHHHHHHhcCChhHHHHHHHhcCC--C----ChH
Q 037178 95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND---FIINTRLITMYSLCGFPLDSRRVFDSLKT--R----NLF 165 (311)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~----~~~ 165 (311)
.+...+......+.+.|++++|...|+.+. +.. +.+ ...+..+..+|.+.|++++|...|++..+ | ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 455667777778889999999999999998 543 222 56777788999999999999999998753 3 235
Q ss_pred HHHHHHHHHHh--------CCChhhHHHHHHHhhhcCCCCCCc-chH-----------------HHHHHHHhccCChhhH
Q 037178 166 QWNALVSGFTK--------NELYTDVLSIFVELSSDTELKPDN-FTF-----------------PCVIKACGGIADVGFG 219 (311)
Q Consensus 166 ~y~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~t~-----------------~~li~~~~~~g~~~~a 219 (311)
.+..+..++.+ .|++++|...|++... ..|+. ... ..+...+.+.|++++|
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 67778888888 9999999999999876 33543 333 4456778888999999
Q ss_pred HHHHHHHHHhCCCC--cHHHHHHHHHHHHhc----------CCHHHHHHHHhhCCC
Q 037178 220 SGVHGMAAKMGLIG--DVFVSNALIAMYGKC----------AFVEEMVKLFEVMPE 263 (311)
Q Consensus 220 ~~~~~~m~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~ 263 (311)
...++.+.+..-.. ....+..+..+|.+. |++++|...|++..+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 99998888764221 345777777888766 888889988888764
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=1.7e-07 Score=74.34 Aligned_cols=120 Identities=9% Similarity=-0.156 Sum_probs=61.5
Q ss_pred HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIA 214 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g 214 (311)
+..+|.+.|++++|...|++.. ..+...|..+...+...|++++|...|++..+ +.|+ ..++..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHh
Confidence 5556666666666666666543 22555666666666666666666666666654 3343 344555555544433
Q ss_pred C--hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 215 D--VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 215 ~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+ .+.+...+.... ...|....+.....++...|++++|...|++..+
T Consensus 137 ~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 222333333321 1122222333334444555666666666666654
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=1.1e-07 Score=75.48 Aligned_cols=168 Identities=13% Similarity=-0.010 Sum_probs=123.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHH----------------HHHhcccCCChhHHHHHHHHHHhhcCCC
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGV----------------LLQACGHEKDIEIGKRVHELVSASTQFS 130 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 130 (311)
.....+.+.| ++++|+..|++... .+-+...|.. +..++.+.|++++|...++... +.. +
T Consensus 9 ~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p 85 (208)
T 3urz_A 9 QKVSAAIEAG-QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-QKA-P 85 (208)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-T
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHC-C
Confidence 3445677889 99999999999988 4344566766 8888999999999999999998 654 4
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCCCCCcchHHH
Q 037178 131 NDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNEL--YTDVLSIFVELSSDTELKPDNFTFPC 205 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~t~~~ 205 (311)
-+...+..+..+|...|++++|...|++.. ..+..+|..+...|...|+ ...+...++.... ..|....+..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~ 162 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYARYR 162 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHHH
Confidence 567888899999999999999999999875 3477889999888876654 3444555544432 2222233444
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
.-.++...|++++|...+++..+. .|+......+..
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 455667789999999999998765 567655554443
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=1.2e-07 Score=87.09 Aligned_cols=147 Identities=10% Similarity=-0.052 Sum_probs=99.0
Q ss_pred CHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHH
Q 037178 79 SLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFD 157 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 157 (311)
++++|++.|++..+ .+.+...+..+...+...|++++|.+.+++.. +.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77888888888777 44556777778888888888888888888887 443 3456677778888888888888888887
Q ss_pred hcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhcc---CChhhHHHHHHHHHHhC
Q 037178 158 SLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGI---ADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 158 ~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~g 230 (311)
+.. ..+...|..+..+|.+.|++++|.+.|++..+ ..|+ ...+..+...+... |+.++|.+.+++..+.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 754 23667788888888888888888888888765 2343 45677777777777 88888888888877765
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=1.4e-07 Score=79.58 Aligned_cols=207 Identities=6% Similarity=-0.119 Sum_probs=133.8
Q ss_pred CHHHHHHHHHhhcc-C-------CCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCc-hhhHHHHHHH
Q 037178 79 SLNKALSLLQENLH-N-------ADLK----EATGVLLQACGHEKDIEIGKRVHELVSAST----QFSN-DFIINTRLIT 141 (311)
Q Consensus 79 ~~~~a~~~~~~m~~-~-------~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~-~~~~~~~ll~ 141 (311)
++++|.+++++..+ . .++. ..|......+...|++++|...+.+.. +. +-.. -..+|+.+..
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Confidence 66777777776554 1 1221 245555666777888888888888766 32 1111 1447777888
Q ss_pred HHHhcCChhHHHHHHHhcC-------CC--ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCC-CcchHHHHHH
Q 037178 142 MYSLCGFPLDSRRVFDSLK-------TR--NLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKP-DNFTFPCVIK 208 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~-------~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~t~~~li~ 208 (311)
+|.+.|++++|...|++.. .+ -..+|+.+...|.. |++++|+..|++...- .+-.. ...++..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888888888777643 12 13567788888877 8899998888887540 11100 1346777888
Q ss_pred HHhccCChhhHHHHHHHHHHh----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCh------hhHHHHHHHH
Q 037178 209 ACGGIADVGFGSGVHGMAAKM----GLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMP-ERNL------VSWNSIICGF 276 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~------~~y~~li~~~ 276 (311)
.+.+.|++++|...+++..+. +..+. ...+..+...+...|++++|...|++.. .|+. .....++.++
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~ 243 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY 243 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 888889999998888887653 21111 2366677777778889999988888876 2221 1234455555
Q ss_pred HhCCCcchHHHH
Q 037178 277 SENGFSCESFDL 288 (311)
Q Consensus 277 ~~~g~~~~a~~l 288 (311)
..|+.+.+.++
T Consensus 244 -~~~d~~~~~~~ 254 (307)
T 2ifu_A 244 -DEQDEEQLLRV 254 (307)
T ss_dssp -HTTCHHHHHHH
T ss_pred -HhcCHHHHHHH
Confidence 56776666653
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=3.2e-07 Score=73.65 Aligned_cols=174 Identities=9% Similarity=-0.021 Sum_probs=108.6
Q ss_pred hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC-CCc-hhhHHHHHHHHHHhcCChhHHHHHHHhcCC--CCh----HHHH
Q 037178 97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQ-FSN-DFIINTRLITMYSLCGFPLDSRRVFDSLKT--RNL----FQWN 168 (311)
Q Consensus 97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~----~~y~ 168 (311)
...+......+.+.|++++|...|+.+. +.. -.+ ....+..+..+|.+.|++++|...|++..+ |+. .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445555666777888888888888877 432 111 234566677788888888888888877652 321 1344
Q ss_pred HHHHHHHh------------------CCChhhHHHHHHHhhhcCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 169 ALVSGFTK------------------NELYTDVLSIFVELSSDTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 169 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.+..++.+ .|++++|...|++..+ ..|+.. ....... .+ .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~----l~------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKR----LV------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHH----HH------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHH----HH------HHHHHH---
Confidence 44444443 4566777777777654 334432 1111100 00 000000
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 230 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNL----VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 230 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
....-.+...|.+.|++++|...|+++.+ |+. ..+..+..+|.+.|+.++|.+.++.+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 01113456778899999999999998875 443 46788899999999999999999988
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.72 E-value=1.2e-07 Score=71.14 Aligned_cols=140 Identities=10% Similarity=-0.089 Sum_probs=90.8
Q ss_pred HhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChh
Q 037178 105 QACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYT 181 (311)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~ 181 (311)
..+...|++++|...+.... ... +-+...+-.+-..|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~-~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST-PSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS-CSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhc-ccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34455667777777777665 221 1123344457777777788888887777654 236677778888888888888
Q ss_pred hHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHH-HHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 182 DVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGV-HGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
+|...|++..+ +.|+ ...+..+...+.+.|+.+++.+. ++...+.. +-+..+|......+.+.|+
T Consensus 83 ~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888877765 4454 45677777777777877765554 46666654 3456667766666666554
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=1.1e-06 Score=73.56 Aligned_cols=153 Identities=12% Similarity=-0.091 Sum_probs=99.4
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCC-----C----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC-CCc----chHH
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKTR-----N----LFQWNALVSGFTKNELYTDVLSIFVELSSDTELK-PDN----FTFP 204 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~~-----~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~----~t~~ 204 (311)
.+..+...|++++|.+.+++..+. + ...|..+...+...|++++|...|++... .... ++. .+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHH
Confidence 356667777777777777765431 1 11233466666666778888888877765 2222 222 2577
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHh-----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-hhhH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKM-----GLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE--------RN-LVSW 269 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~-~~~y 269 (311)
.+...+...|++++|...++...+. +..+ ...+|..+...|.+.|++++|...+++..+ .. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7777788888888888888777631 1122 234777788888888888888888776653 11 3567
Q ss_pred HHHHHHHHhCCC-cchHHHHHHhh
Q 037178 270 NSIICGFSENGF-SCESFDLLIKM 292 (311)
Q Consensus 270 ~~li~~~~~~g~-~~~a~~l~~~m 292 (311)
..+..+|.+.|+ .++|.+.+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 777788888884 47777777665
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=5.7e-07 Score=71.11 Aligned_cols=126 Identities=7% Similarity=-0.190 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI 213 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~ 213 (311)
.+..+...+...|++++|...|++..+++...|..+...|.+.|++++|...|++... . .| +...+..+..++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-R--DKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CccchHHHHHHHHHHHHc
Confidence 3445777888899999999999998888888999999999999999999999999876 2 34 456788888999999
Q ss_pred CChhhHHHHHHHHHHhCCC--------------C-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 214 ADVGFGSGVHGMAAKMGLI--------------G-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
|++++|.+.++...+..-. | ...++..+...|.+.|++++|.+.|++..+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999998875311 1 237889999999999999999999998875
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=2.5e-07 Score=84.92 Aligned_cols=148 Identities=7% Similarity=-0.067 Sum_probs=113.0
Q ss_pred CCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHH
Q 037178 110 EKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 110 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~ 186 (311)
.|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAV-RHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887 443 34577888899999999999999999998653 3678899999999999999999999
Q ss_pred HHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHhhCC
Q 037178 187 FVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC---AFVEEMVKLFEVMP 262 (311)
Q Consensus 187 ~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 262 (311)
|++..+ ..|+ ...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...|.+. |+.++|.+.+++..
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999876 3454 5688899999999999999999999998875 45678899999999999 99999999999887
Q ss_pred C
Q 037178 263 E 263 (311)
Q Consensus 263 ~ 263 (311)
+
T Consensus 156 ~ 156 (568)
T 2vsy_A 156 A 156 (568)
T ss_dssp H
T ss_pred h
Confidence 4
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.69 E-value=4.9e-08 Score=73.30 Aligned_cols=138 Identities=4% Similarity=-0.135 Sum_probs=99.8
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCC
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIAD 215 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~ 215 (311)
-..+...|++++|.+.+....+. +...+-.+...|.+.|++++|.+.|++..+ +.|+ ..+|..+..++.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34455667888888888876643 345667788888888999999999888876 4554 5678888888888889
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HhhCCC--C-ChhhHHHHHHHHHhCCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKL-FEVMPE--R-NLVSWNSIICGFSENGF 281 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~--~-~~~~y~~li~~~~~~g~ 281 (311)
+++|...++...+.. +-+..+|..+...|.+.|+.++|.+. +++..+ | +..+|+.....+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999998888888775 44678888888888888888766655 455543 4 45667666666655553
No 108
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.67 E-value=2.5e-06 Score=76.12 Aligned_cols=220 Identities=7% Similarity=-0.047 Sum_probs=142.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCC---ChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEK---DIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+..+-..|...+ .++++........+ ...++..+..+...+...| +.++|...|+... +.| .++...+..|
T Consensus 143 a~~~Lg~~y~~~~-~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 143 AGLAQVLLYRTQG-TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHHT-CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHcCC-CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHH
Confidence 3444444444444 44433333332222 2344447777777777778 7888888888887 666 3444444446
Q ss_pred HHHHHhc----CChhHHHHHHHhcCCCChHHHHHHHHH-H--HhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 140 ITMYSLC----GFPLDSRRVFDSLKTRNLFQWNALVSG-F--TKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 140 l~~~~~~----g~~~~A~~l~~~m~~~~~~~y~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
...|... ++.++|.+.|++....+...+..+... + ...|++++|.+.|++..+ .| +...+..+-..|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-
Confidence 6666554 688888888887763366677777766 3 457888888888888776 55 4555656666555
Q ss_pred cC-----ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----
Q 037178 213 IA-----DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEEMVKLFEVMPER-NLVSWNSIICGFSE---- 278 (311)
Q Consensus 213 ~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~y~~li~~~~~---- 278 (311)
.| +.++|.+.|.+.. .-+...+..|-..|.. ..++++|.+.|++..++ +......|-..|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 44 8888888887766 3356677777777766 33888888888877653 45566666666664
Q ss_pred CCCcchHHHHHHhhhhccCC
Q 037178 279 NGFSCESFDLLIKMMGCEEG 298 (311)
Q Consensus 279 ~g~~~~a~~l~~~m~~~~~g 298 (311)
..+.++|..+|+.. .+.|
T Consensus 371 ~~d~~~A~~~~~~A--~~~g 388 (452)
T 3e4b_A 371 KPDPLNAYVFSQLA--KAQD 388 (452)
T ss_dssp CCCHHHHHHHHHHH--HTTC
T ss_pred CCCHHHHHHHHHHH--HHCC
Confidence 34777788888777 5554
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=1.7e-05 Score=66.71 Aligned_cols=217 Identities=8% Similarity=-0.026 Sum_probs=166.0
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCCC-hhhHHHHHHhcccCC--ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH---
Q 037178 70 ITTLCEESKSLNKALSLLQENLHNADL-KEATGVLLQACGHEK--DIEIGKRVHELVSASTQFSNDFIINTRLITMY--- 143 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~--- 143 (311)
+.+..+.|...++|+++++.+....|+ ...|+.--..+...| +++++...++.+. ... +-+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L-~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA-LDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-HHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH-HHC-cccHHHHHHHHHHHHHH
Confidence 334445552567999999999994444 556777777777777 9999999999998 554 34455565555555
Q ss_pred -Hhc---CChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChh--hHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc
Q 037178 144 -SLC---GFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYT--DVLSIFVELSSDTELKP-DNFTFPCVIKACGGI 213 (311)
Q Consensus 144 -~~~---g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~ 213 (311)
.+. +++++++++++.+. .+|-.+|+.-...+.+.|.++ ++++.++++.+ . .| |-..|+.-...+.+.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~--d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-T--DLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHSS
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHhc
Confidence 555 78999999999986 357788988888888889988 99999999987 3 33 445566555555666
Q ss_pred CC------hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHhhCCC------CChhhHHHHHHHHHhCC
Q 037178 214 AD------VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE-MVKLFEVMPE------RNLVSWNSIICGFSENG 280 (311)
Q Consensus 214 g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~------~~~~~y~~li~~~~~~g 280 (311)
|. ++++.+.+..+.... +-|...|+-+-..+.+.|+..+ +..+.++..+ .+...+..+...|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 888999999988886 6689999999999999988444 5556666543 35678899999999999
Q ss_pred CcchHHHHHHhh
Q 037178 281 FSCESFDLLIKM 292 (311)
Q Consensus 281 ~~~~a~~l~~~m 292 (311)
+.++|.++++.+
T Consensus 273 ~~~~A~~~~~~l 284 (306)
T 3dra_A 273 KYNESRTVYDLL 284 (306)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999998
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=3.8e-07 Score=72.13 Aligned_cols=122 Identities=7% Similarity=-0.098 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM 244 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 244 (311)
..+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...++...+.. +.+...|..+...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 346667788899999999999998774 4677899999999999999999999999998876 5578899999999
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-Ch----------------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 245 YGKCAFVEEMVKLFEVMPE--R-NL----------------VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~--~-~~----------------~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|.+.|++++|.+.|++..+ | +. ..|..+...|...|++++|.+.+++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999998764 2 22 68889999999999999999999998
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=2.8e-06 Score=68.06 Aligned_cols=178 Identities=7% Similarity=-0.089 Sum_probs=112.3
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcC-CCchh-hHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQ-FSNDF-IINT 137 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~~~-~~~~ 137 (311)
..+..+...+.+.| ++++|+..|+++....|+ ...+..+..++.+.|++++|...|+.+. +.. -.+.. ..+-
T Consensus 5 ~~~~~~a~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDG-NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCcHHHHHH
Confidence 34566677888999 999999999999883232 3467778889999999999999999998 443 12221 2333
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHhcCC--CC-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC
Q 037178 138 RLITMYSL------------------CGFPLDSRRVFDSLKT--RN-LFQWNALVSGFTKNELYTDVLSIFVELSSDTEL 196 (311)
Q Consensus 138 ~ll~~~~~------------------~g~~~~A~~l~~~m~~--~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 196 (311)
.+..++.+ .|+.++|...|+++.+ |+ ...+.+.... ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~~---- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLAK---- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHHH----
Confidence 34444443 5789999999998764 32 2233221110 000011100
Q ss_pred CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 197 KPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 197 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
....+...+.+.|++++|...++.+.+..-.. ....+..+..+|.+.|+.++|.+.++.+.
T Consensus 149 -----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 149 -----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11234555667777777777777776653111 12456677777777777777777776554
No 112
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=1.5e-07 Score=73.66 Aligned_cols=172 Identities=10% Similarity=-0.065 Sum_probs=116.8
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC------C---ChHHHHHHHHHHHhCC
Q 037178 108 GHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT------R---NLFQWNALVSGFTKNE 178 (311)
Q Consensus 108 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~------~---~~~~y~~li~~~~~~g 178 (311)
...|++++|.++++.+. . .......++..+...|...|++++|...|++..+ . ...+++.+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 46788899988666655 3 2234667888888899999999999888877542 1 3457888888899999
Q ss_pred ChhhHHHHHHHhhhc---CCCCC--CcchHHHHHHHHhccCChhhHHHHHHHHHHh----CCCC-cHHHHHHHHHHHHhc
Q 037178 179 LYTDVLSIFVELSSD---TELKP--DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLIG-DVFVSNALIAMYGKC 248 (311)
Q Consensus 179 ~~~~a~~~~~~m~~~---~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~ 248 (311)
++++|.+.+++.... .+-.| ....+..+...+...|++++|...+++..+. +... -..++..+...|.+.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999998886541 11111 1245777778888889999999888887643 2111 134467778888888
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 249 AFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 249 g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|++++|.+.+++ .+...-+.|+......+...+
T Consensus 161 g~~~~A~~~~~~-----------al~~~~~~~~~~~~~~~~~~~ 193 (203)
T 3gw4_A 161 KNLLEAQQHWLR-----------ARDIFAELEDSEAVNELMTRL 193 (203)
T ss_dssp TCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHhcc
Confidence 999999888776 445555555555555554444
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=5e-06 Score=69.46 Aligned_cols=155 Identities=10% Similarity=-0.135 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC---CCh------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCC-CCC----cch
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKT---RNL------FQWNALVSGFTKNELYTDVLSIFVELSSDTEL-KPD----NFT 202 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~---~~~------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~t 202 (311)
...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|...|++... ... ..+ ..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT-TCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcCCchHHHHHH
Confidence 3345555666666666666554321 111 1233344455566666666666666543 111 111 225
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHH---hC-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------hh
Q 037178 203 FPCVIKACGGIADVGFGSGVHGMAAK---MG-LIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-------LV 267 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~m~~---~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-------~~ 267 (311)
|+.+...|...|++++|...+++..+ .. -.+ ...+|..+...|.+.|++++|...+++..+ ++ ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 56666666666677777666666552 11 111 124666666667777777777766665542 11 34
Q ss_pred hHHHHHHHHHhCCCcchH-HHHHHhh
Q 037178 268 SWNSIICGFSENGFSCES-FDLLIKM 292 (311)
Q Consensus 268 ~y~~li~~~~~~g~~~~a-~~l~~~m 292 (311)
+|..+...|.+.|+.++| .+.+++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 566666667777777666 5545443
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=1.1e-06 Score=69.80 Aligned_cols=153 Identities=10% Similarity=-0.085 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-CChHHHHHHHHHHHhCC----ChhhHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT-RNLFQWNALVSGFTKNE----LYTDVLSIFVELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~ 209 (311)
.+..|-..|...+++++|.+.|++..+ .+...+..|-..|.. + ++++|.+.|++..+ .| +...+..+-..
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHH
Confidence 333344444444444444444444332 233344444444444 3 44445554444433 22 23333333333
Q ss_pred Hhc----cCChhhHHHHHHHHHHhCCC-CcHHHHHHHHHHHHh----cCCHHHHHHHHhhCCC--CChhhHHHHHHHHHh
Q 037178 210 CGG----IADVGFGSGVHGMAAKMGLI-GDVFVSNALIAMYGK----CAFVEEMVKLFEVMPE--RNLVSWNSIICGFSE 278 (311)
Q Consensus 210 ~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~--~~~~~y~~li~~~~~ 278 (311)
+.. .+++++|.+++.+..+.|.. .+...+..|-..|.. .++.++|...|++..+ .+...+..|-..|..
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 333 44445555555444443311 013444444444444 4445555555554432 233344444444443
Q ss_pred C-C-----CcchHHHHHHhh
Q 037178 279 N-G-----FSCESFDLLIKM 292 (311)
Q Consensus 279 ~-g-----~~~~a~~l~~~m 292 (311)
. | +.++|.++|++.
T Consensus 175 g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 2 1 455555555544
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=7.7e-07 Score=75.05 Aligned_cols=185 Identities=9% Similarity=-0.034 Sum_probs=137.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhc----CCCc--
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL----KEATGVLLQACGHEKDIEIGKRVHELVSAST----QFSN-- 131 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----g~~~-- 131 (311)
.|+.....|...| ++++|...|.+... ...+ ..+|..+...+...|++++|...+++.. +. | .+
T Consensus 38 ~~~~a~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g-~~~~ 114 (307)
T 2ifu_A 38 EYAKAAVAFKNAK-QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VMYVENG-TPDT 114 (307)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HHHHTTT-CHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcC-CHHH
Confidence 5777788888999 99999999999877 1112 3478888889999999999999999876 32 2 22
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCC-----C----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc---CCCCCC
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT-----R----NLFQWNALVSGFTKNELYTDVLSIFVELSSD---TELKPD 199 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p~ 199 (311)
-..+++.+...|.+ |++++|...|++..+ . -..+|+.+...|.+.|++++|+..|++.... .+..++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 24577888889988 999999999987642 1 1467899999999999999999999987651 111111
Q ss_pred -cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc------HHHHHHHHHHHHhcCCHHHHHHH
Q 037178 200 -NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD------VFVSNALIAMYGKCAFVEEMVKL 257 (311)
Q Consensus 200 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~ 257 (311)
..++..+..++...|++++|...+++.. . .|+ ......++..| ..|+.+.+.++
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 1256666777778899999999999987 3 231 23455566665 57887777664
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=3.1e-06 Score=69.84 Aligned_cols=183 Identities=11% Similarity=-0.092 Sum_probs=131.4
Q ss_pred hcCCCHHHHHHHHHhhcc-CCCChhhHHHHH-------HhcccCCChhHHHHHHHHHHhhcCCCch--------------
Q 037178 75 EESKSLNKALSLLQENLH-NADLKEATGVLL-------QACGHEKDIEIGKRVHELVSASTQFSND-------------- 132 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~m~~~~g~~~~-------------- 132 (311)
..+ +...|.+.|.+..+ .+-....|..++ ..+.+.++..++...+... .++.|+
T Consensus 18 ~~~-d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~---l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPM-SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS---VQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT---TTCCGGGGCCEEECCTTTCC
T ss_pred cCC-CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH---hcCChhhhhhhhccCCcccc
Confidence 567 99999999999999 555567777663 3333333333433333332 233332
Q ss_pred --------hhHHHHHHHHHHhcCChhHHHHHHHhcCC--CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--c
Q 037178 133 --------FIINTRLITMYSLCGFPLDSRRVFDSLKT--RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--N 200 (311)
Q Consensus 133 --------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~ 200 (311)
...+-.+...+...|++++|.++|+.+.. |+-...-.+...+.+.|++++|+..|+.... .. .|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHH
Confidence 12344577888999999999999999873 4333666666788999999999999986654 21 121 2
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..+..+-.++...|++++|...|++.......| ..........++.+.|+.++|..+|+++.+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 367778889999999999999999987544324 345677778888999999999999998874
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=5.1e-06 Score=69.37 Aligned_cols=164 Identities=9% Similarity=-0.135 Sum_probs=117.8
Q ss_pred hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-chh----hHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----
Q 037178 98 EATGVLLQACGHEKDIEIGKRVHELVSASTQFS-NDF----IINTRLITMYSLCGFPLDSRRVFDSLKT-----RN---- 163 (311)
Q Consensus 98 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~---- 163 (311)
..+...+..+...|++++|.+.+.... +..-. ++. ..+..+...+...|++++|...|++..+ .+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556677778889999988888777 43211 211 2334466667788899999998876531 11
Q ss_pred hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-----cchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCC-
Q 037178 164 LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-----NFTFPCVIKACGGIADVGFGSGVHGMAAKMG----LIG- 233 (311)
Q Consensus 164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~- 233 (311)
..+|+.+...|...|++++|...|++........|+ ..+|..+...|.+.|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 358899999999999999999999987621111222 1578888999999999999999998876542 111
Q ss_pred cHHHHHHHHHHHHhcCCHHHH-HHHHhhCC
Q 037178 234 DVFVSNALIAMYGKCAFVEEM-VKLFEVMP 262 (311)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 262 (311)
-..+|..+...|.+.|+.++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 267889999999999999999 77666543
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=2.7e-06 Score=71.11 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-C--CCCh----hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCC-ch----hhHHH
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-N--ADLK----EATGVLLQACGHEKDIEIGKRVHELVSASTQFS-ND----FIINT 137 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~--~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~----~~~~~ 137 (311)
+..+...| ++++|..++++... . .++. ..+..+...+...|++++|...++.+. +.... .+ ..+++
T Consensus 82 i~~~~~~~-~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLCKQK-RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHh-hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHhcccccHHHHHHHHH
Confidence 45566666 66666666666655 1 1111 122234444455556666666666665 32111 11 22455
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC------C----ChHHHHHHHHHHHhCCChhhHHHHHHH
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKT------R----NLFQWNALVSGFTKNELYTDVLSIFVE 189 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~------~----~~~~y~~li~~~~~~g~~~~a~~~~~~ 189 (311)
.+...|...|++++|...|++..+ . ...+|..+...|.+.|++++|...+++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555555555555555555544331 0 112344444444455555555444444
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=1.4e-06 Score=62.02 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
..|..+...+...| ++++|.+.|+++.. .+.+..++..+...+...|++++|...++.+. +.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHH
Confidence 34555555555666 66666666665555 33344455555555555555555555555555 322 2233444444455
Q ss_pred HHhcCChhHHHHHHHhc
Q 037178 143 YSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m 159 (311)
|.+.|++++|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555554443
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=9.9e-07 Score=73.45 Aligned_cols=186 Identities=10% Similarity=-0.049 Sum_probs=112.2
Q ss_pred ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHH
Q 037178 96 LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVS 172 (311)
Q Consensus 96 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~ 172 (311)
+...+..+...+...|++++|...++... +.. +.+...|..+..+|.+.|++++|...+++..+ .+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556666677777788888888887777 443 33566777777888888888888888877653 35677888888
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
+|...|++++|...|++..+ ..|+. ..+...+....+.+ ++. -+..........+......+... ..|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 88888888888888887654 22211 11111222111111 111 11223333344455554444332 26888
Q ss_pred HHHHHHHhhCCC--CC-hhhHHHHHHHHHhC-CCcchHHHHHHhh
Q 037178 252 EEMVKLFEVMPE--RN-LVSWNSIICGFSEN-GFSCESFDLLIKM 292 (311)
Q Consensus 252 ~~A~~~~~~m~~--~~-~~~y~~li~~~~~~-g~~~~a~~l~~~m 292 (311)
++|.+.+++..+ |+ ......+-..+.+. +++++|.++|++.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888887775 32 22333443444444 6678888888877
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=2.1e-06 Score=64.63 Aligned_cols=123 Identities=7% Similarity=-0.072 Sum_probs=68.5
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..+...+...| ++++|...|++... .+.+...+..+...+...|++++|...++... +.. +.+...+..+..+|
T Consensus 15 ~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHH
Confidence 4555666666667 77777777776666 44455666666666666666666666666666 332 23344555555556
Q ss_pred HhcCChhHHHHHHHhcCC---CChHHHHH--HHHHHHhCCChhhHHHHHHHh
Q 037178 144 SLCGFPLDSRRVFDSLKT---RNLFQWNA--LVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~---~~~~~y~~--li~~~~~~g~~~~a~~~~~~m 190 (311)
.+.|++++|...|++..+ .+...+.. ....+.+.|++++|...+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666555431 23333322 222244455555555555443
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=3.4e-06 Score=59.88 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
..+..+...+.+.|++++|.+.|+++. ..+...|..+...+.+.|++++|...|+++.. .. ..+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hC-CccHHHHHHHHHHH
Confidence 344444445555555555555554432 12344455555555555555555555555443 11 11233444445555
Q ss_pred hccCChhhHHHHHHHHHHh
Q 037178 211 GGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~ 229 (311)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555554444
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=1.2e-06 Score=68.56 Aligned_cols=128 Identities=5% Similarity=-0.120 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhh---cCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHh----CCC--Cc
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSS---DTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLI--GD 234 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~~ 234 (311)
..+..+...+...|++++|...+++... ..+..| ...++..+...+...|++++|.+.+.+..+. +-. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444555555555544444322 011111 1223444444444555555554444443322 101 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 235 VFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RNL----VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..++..+...|...|++++|.+.+++..+ .+. .++..+...+...|++++|.+.+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 23344444444445555555444444331 111 12344444444455555554444443
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=1.9e-06 Score=62.13 Aligned_cols=112 Identities=10% Similarity=-0.071 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHH
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVI 207 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li 207 (311)
+...+..+...+.+.|++++|.+.|++..+ .+...|..+...+...|++++|...|++..+ ..| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCchHHHHHHH
Confidence 344555555555555555555555554331 2444555555555555555555555555543 122 233444445
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 247 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 247 (311)
.++.+.|++++|.+.+++..+.. +.+...+..+...+.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 55555555555555555554442 2233344444444443
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=2.7e-07 Score=76.96 Aligned_cols=191 Identities=6% Similarity=-0.064 Sum_probs=129.3
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+...+..+-..+.+.| ++++|+..|++... .+.+...|..+..++.+.|++++|...++... +.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCCHHHHHHHH
Confidence 3446777888899999 99999999999998 55678889999999999999999999999998 554 44677888899
Q ss_pred HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
.+|.+.|++++|...|++..+ | +...+...+....+. .++.. +..... .....+... ...+..+. .|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~i-~~~l~~l~-~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEE-RRIHQESEL-HSYLTRLI-AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHH-TCCCCCCHH-HHHHHHHH-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHH-HHHhhhHHH-HHHHHHHH-HHHHH
Confidence 999999999999999988653 1 111111112211111 11111 122222 223333333 33333333 68888
Q ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHhhCCC
Q 037178 218 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-AFVEEMVKLFEVMPE 263 (311)
Q Consensus 218 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 263 (311)
+|.+.++...+.. +.+......+-..+.+. +++++|.++|.+..+
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888887766543 33445555555556665 778999999987764
No 126
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.46 E-value=8e-06 Score=72.79 Aligned_cols=154 Identities=9% Similarity=0.003 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHHhcC---CCChHHHHHHHHHHHhC----CChhhHHHHHHHhhhcCCCCCCcchHH
Q 037178 135 INTRLITMYSLCG---FPLDSRRVFDSLK---TRNLFQWNALVSGFTKN----ELYTDVLSIFVELSSDTELKPDNFTFP 204 (311)
Q Consensus 135 ~~~~ll~~~~~~g---~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~t~~ 204 (311)
.+..|-..|.+.| +.++|.+.|++.. .++...+..+...|... +++++|.+.|++.. .-+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHH
Confidence 6666777888888 7888888887654 23444446666666544 67888888888764 22344555
Q ss_pred HHHHH-H--hccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHhhCCCCChhhHHHHHHHH
Q 037178 205 CVIKA-C--GGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCA-----FVEEMVKLFEVMPERNLVSWNSIICGF 276 (311)
Q Consensus 205 ~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~y~~li~~~ 276 (311)
.+-.. + ...++.++|.+.+.+..+.| +...+..|...|. .| ++++|.+.|++...-+...+..|-..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55554 3 45789999999999888877 5667777777777 55 899999999988833556777777777
Q ss_pred Hh----CCCcchHHHHHHhhhhccCCC
Q 037178 277 SE----NGFSCESFDLLIKMMGCEEGF 299 (311)
Q Consensus 277 ~~----~g~~~~a~~l~~~m~~~~~g~ 299 (311)
.. ..+.++|.++|++. .+.|.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~A--a~~g~ 353 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTA--ARNGQ 353 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHH--HTTTC
T ss_pred HCCCCCCcCHHHHHHHHHHH--HhhCh
Confidence 66 34888899999888 55553
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=2.4e-06 Score=61.20 Aligned_cols=114 Identities=7% Similarity=-0.129 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHH
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIK 208 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~ 208 (311)
...+..+...+...|++++|...|++.. ..+...|..+...+...|++++|...+++... . .|+ ...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-I--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-c--CccCHHHHHHHHH
Confidence 3344445555555555555555555432 12444455555555555555555555555443 1 222 334444444
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 209 ACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 209 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
.+...|++++|...++...+.. +.+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 4555555555555555544443 2233444444444444443
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=7.4e-07 Score=68.42 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred hcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH-HHhcCCh--h
Q 037178 75 EESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM-YSLCGFP--L 150 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~-~~~~g~~--~ 150 (311)
..| ++++|...+++... .+.+...|..+...+...|++++|...++.+. +.. +.+...+..+..+ |.+.|++ +
T Consensus 22 ~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQ-NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL-QLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 455 77777777777666 55566677777777777777777777777776 433 2345556666666 6677776 7
Q ss_pred HHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 151 DSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 151 ~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
+|...|++.. ..+...|..+...|...|++++|...|++..+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 7777777654 23556677777777777777777777777765
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.44 E-value=2.5e-05 Score=61.89 Aligned_cols=161 Identities=10% Similarity=-0.092 Sum_probs=109.0
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCC----ChhHHHHHHHHHHhhcCCCchhhHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEK----DIEIGKRVHELVSASTQFSNDFIIN 136 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~g~~~~~~~~ 136 (311)
.+..++..+-..|...+ ++++|+..|++..+ ..+...+..+-..+.. + +.++|...|+... +.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~-~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSG-DYQKAEYWAQKAAA-QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCC---CHHHH
Confidence 34556667777777777 88888888887765 2345566666666666 5 7788888888877 544 44555
Q ss_pred HHHHHHHHh----cCChhHHHHHHHhcCCCC-----hHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchH
Q 037178 137 TRLITMYSL----CGFPLDSRRVFDSLKTRN-----LFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTF 203 (311)
Q Consensus 137 ~~ll~~~~~----~g~~~~A~~l~~~m~~~~-----~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~ 203 (311)
..|-..|.. .+++++|.+.|++..+.+ ..++..|-..|.. .+++++|...|++..+ . ..+...+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~--~~~~~a~ 165 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-L--SRTGYAE 165 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-T--SCTTHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-c--CCCHHHH
Confidence 666667766 677888888888766532 5677777777777 6778888888887766 3 2344455
Q ss_pred HHHHHHHhcc-C-----ChhhHHHHHHHHHHhCC
Q 037178 204 PCVIKACGGI-A-----DVGFGSGVHGMAAKMGL 231 (311)
Q Consensus 204 ~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 231 (311)
..|-..|... | +.++|..+++...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5555555432 2 77788888877777763
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=3.3e-06 Score=63.51 Aligned_cols=123 Identities=9% Similarity=-0.109 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKAC 210 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~ 210 (311)
.+..+...+...|++++|...|++.. ..+...|..+...+...|++++|...|++... ..| +...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHH
Confidence 34445555555556666555555433 22455555666666666666666666666544 123 234555555566
Q ss_pred hccCChhhHHHHHHHHHHhCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHhhC
Q 037178 211 GGIADVGFGSGVHGMAAKMGLIGDVFVS--NALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m 261 (311)
...|++++|...+++..+.. +.+...+ -.....+.+.|++++|.+.+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666655543 2233333 22333355566666666665543
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=3e-06 Score=61.12 Aligned_cols=113 Identities=7% Similarity=-0.063 Sum_probs=81.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
+...|..+...+.+.| ++++|...|++... .+.+...+..+...+...|++++|...+++.. +.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI-QLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhC-CCchHHHHHHH
Confidence 4456777888888888 89999999888887 55567778888888888888888888888887 543 33556677777
Q ss_pred HHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhC
Q 037178 141 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKN 177 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~ 177 (311)
.+|.+.|++++|.+.|++..+ | +...+..+...+.+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 777777888888777776542 2 334555555555443
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=2.2e-06 Score=64.28 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcC--C-CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLK--T-RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKAC 210 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~--~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~ 210 (311)
.+..+...+.+.|++++|...|++.. . .+...|..+..+|.+.|++++|...|++..+ +.|+ ...|..+-.++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHHHHH
Confidence 33334444444455555555554433 1 2344444444445555555555555544433 2232 23444444444
Q ss_pred hccCChhhHHHHHHHHHHh
Q 037178 211 GGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~~ 229 (311)
.+.|++++|...|+...+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 4444444444444444443
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=1.4e-06 Score=74.47 Aligned_cols=119 Identities=9% Similarity=-0.037 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcC--CC-C---------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhc
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLK--TR-N---------------LFQWNALVSGFTKNELYTDVLSIFVELSSD 193 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~--~~-~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (311)
+...+..+...|.+.|++++|...|++.. .| + ...|..+..+|.+.|++++|+..|++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 34566667777777777777777776654 12 2 35667777777777777777777777655
Q ss_pred CCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178 194 TELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 194 ~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 254 (311)
+.| +...|..+..++...|++++|...|++..+.. +-+..++..+...+.+.|+.++|
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 233 34566666666777777777777777666654 33556666666666666766666
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=3.7e-06 Score=60.23 Aligned_cols=111 Identities=9% Similarity=-0.095 Sum_probs=57.9
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..+...+...| ++++|...|++... .+.+...+..+...+...|++++|...++... +.. +.+...+..+...|
T Consensus 14 ~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hcC-ccCHHHHHHHHHHH
Confidence 4555555666666 66666666666655 43445555555555566666666666666655 332 22344444455555
Q ss_pred HhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCC
Q 037178 144 SLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNE 178 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g 178 (311)
.+.|++++|...|++.. ..+...+..+..++.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 55555555555554432 123344444444444433
No 135
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.35 E-value=6.8e-06 Score=76.63 Aligned_cols=198 Identities=6% Similarity=-0.149 Sum_probs=151.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHH-HHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC---------CC
Q 037178 62 QGLHFLQEITTLCEESKSLNKAL-SLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ---------FS 130 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~-~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g---------~~ 130 (311)
+...|-....-+.+.| +.++|. ++|++... .+.+...|...+...-+.|++++|.++|+.+. ... -.
T Consensus 342 ~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l-~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 342 APEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI-DRIHLDLAALMEDD 419 (679)
T ss_dssp CHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHhhhhhhcc
Confidence 4456777777777788 888997 99999988 76677777788888888999999999999988 421 01
Q ss_pred c------------hhhHHHHHHHHHHhcCChhHHHHHHHhcCCC----ChHHHHHHHHHHHhC-CChhhHHHHHHHhhhc
Q 037178 131 N------------DFIINTRLITMYSLCGFPLDSRRVFDSLKTR----NLFQWNALVSGFTKN-ELYTDVLSIFVELSSD 193 (311)
Q Consensus 131 ~------------~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~ 193 (311)
| ...+|...+...-+.|.++.|.++|++..+. ....|-..+..-.+. ++.+.|..+|+...+
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk- 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK- 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence 3 2347888888888899999999999987532 233443333333344 459999999999876
Q ss_pred CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 194 TELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLI--GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 194 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
. +.-+...+...++-....|+.+.|+.+|++....... -....|...++.-.+.|+.+.+.++.+++.+
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 2224445667788788899999999999998877532 2568899999999999999999999999874
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=0.00021 Score=60.90 Aligned_cols=216 Identities=10% Similarity=0.006 Sum_probs=159.1
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCC-ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc-C
Q 037178 71 TTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEK-DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC-G 147 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~-g 147 (311)
++..+.+...++|+++++++.. .+-+...|+.--..+...| +++++...++.+. ... +-+..+|+.--..+.+. +
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHhcC
Confidence 3334444267899999999999 4445566777666666777 5999999999998 554 55677888777777776 7
Q ss_pred -ChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChh--------hHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC
Q 037178 148 -FPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYT--------DVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA 214 (311)
Q Consensus 148 -~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g 214 (311)
+.++++++++.+.+. |-.+|+.-...+.+.|.++ ++++.++++.+ . .| |...|+..-..+.+.+
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~--dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-V--DGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHTTST
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHhcc
Confidence 899999999998853 6677877666666666666 89999999876 3 34 5556777777777777
Q ss_pred C-------hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH--------------------HHHHHHHhhCCC----
Q 037178 215 D-------VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV--------------------EEMVKLFEVMPE---- 263 (311)
Q Consensus 215 ~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~---- 263 (311)
+ ++++.+.+.+..... +-|...|+-+-..+.+.|+- .+..+...++..
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 5 678888888888776 66889998888888777753 445555555542
Q ss_pred -----CChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 264 -----RNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 264 -----~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+.......|...|...|+.++|.++++.+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34567888999999999999999999998
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=6.7e-07 Score=70.14 Aligned_cols=153 Identities=12% Similarity=-0.062 Sum_probs=89.6
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC--------------cc
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD--------------NF 201 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--------------~~ 201 (311)
.+......|.++++.+.|+.-.+ .....|..+...+.+.|++++|...|++......-.|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33444455666666666553322 13445667777777788888888888777651111111 15
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHh
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSE 278 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~ 278 (311)
.|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++..+ | +..++..+...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 66777777788888888888888877764 44677777888888888888888888887653 3 45567777777777
Q ss_pred CCCcchHH-HHHHhh
Q 037178 279 NGFSCESF-DLLIKM 292 (311)
Q Consensus 279 ~g~~~~a~-~l~~~m 292 (311)
.++.+++. ..+..|
T Consensus 169 ~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 169 LKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHC---------
T ss_pred HHHHHHHHHHHHHHH
Confidence 66666665 455555
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=6.5e-06 Score=70.37 Aligned_cols=142 Identities=7% Similarity=-0.113 Sum_probs=107.2
Q ss_pred CChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc----------------chHHHHH
Q 037178 147 GFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----------------FTFPCVI 207 (311)
Q Consensus 147 g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----------------~t~~~li 207 (311)
+++++|...|+...+ | +...|..+...|.+.|++++|...|++... +.|+. ..|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 455555555544331 2 556788888888888899999888888766 33443 6788888
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE 284 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~ 284 (311)
.++.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+ | +..++..+...+.+.|+.++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888889999988888888775 45778888888888888999999888888764 3 55678888888888888888
Q ss_pred H-HHHHHhh
Q 037178 285 S-FDLLIKM 292 (311)
Q Consensus 285 a-~~l~~~m 292 (311)
| .++++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 7 4456655
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.28 E-value=1.1e-05 Score=58.28 Aligned_cols=90 Identities=6% Similarity=-0.081 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
|...-..+.+.| ++++|++.|++..+ .+.+...|..+..++.+.|++++|...++... +.+ +.+...|..+..+|.
T Consensus 16 ~~~~G~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKG-DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI-RLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH-Hhh-hhhhHHHHHHHHHHH
Confidence 444444555555 55555555555555 33344455555555555555555555555554 332 223334444444444
Q ss_pred hcCChhHHHHHHHh
Q 037178 145 LCGFPLDSRRVFDS 158 (311)
Q Consensus 145 ~~g~~~~A~~l~~~ 158 (311)
..|++++|.+.|++
T Consensus 93 ~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 93 AMREWSKAQRAYED 106 (126)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 44444444444444
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.27 E-value=3.5e-06 Score=63.18 Aligned_cols=94 Identities=5% Similarity=-0.103 Sum_probs=60.1
Q ss_pred hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHH
Q 037178 97 KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSG 173 (311)
Q Consensus 97 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~ 173 (311)
...+..+...+.+.|++++|...|+.+. +.. +.+...|..+..+|.+.|++++|...|++.. ..+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3455555666666666666666666666 443 3345566666666667777777777666653 2355666677777
Q ss_pred HHhCCChhhHHHHHHHhhh
Q 037178 174 FTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~ 192 (311)
|.+.|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777655
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.27 E-value=1.3e-05 Score=57.87 Aligned_cols=105 Identities=9% Similarity=-0.065 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHH
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKA 209 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~ 209 (311)
..+..+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..|++..+ +.|+ ...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHHHH
Confidence 345556667777777777777776643 23566777777777777777777777777655 3343 4566677777
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 242 (311)
+...|++++|.+.|+...+.. +-+...+..|-
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 777777777777777776654 33445544443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=7.9e-06 Score=62.54 Aligned_cols=117 Identities=8% Similarity=-0.053 Sum_probs=68.4
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHH-HHhCCCh--h
Q 037178 108 GHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSG-FTKNELY--T 181 (311)
Q Consensus 108 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~-~~~~g~~--~ 181 (311)
...|++++|...++... +.. +.+...+..+...|...|++++|...|++.. ..+...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKI-RAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHH-HHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45566677777777666 333 3345566666677777777777777776654 2355556666666 5566666 6
Q ss_pred hHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 182 DVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
+|...|++..+ ..|+ ...+..+...+...|++++|...+....+.
T Consensus 99 ~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALA---LDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 67666666654 2233 345555666666666666666666666554
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=3e-06 Score=63.26 Aligned_cols=91 Identities=10% Similarity=-0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKAC 210 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~ 210 (311)
.+..+...+.+.|++++|...|++.. ..+...|..+..+|...|++++|...|++... +.| +...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence 34444445555555555555555432 12444455555555555555555555555443 223 233444455555
Q ss_pred hccCChhhHHHHHHHHHH
Q 037178 211 GGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 211 ~~~g~~~~a~~~~~~m~~ 228 (311)
...|++++|.+.++...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.4e-05 Score=55.43 Aligned_cols=91 Identities=4% Similarity=-0.200 Sum_probs=42.8
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CC--ChHHHHHHHHHH
Q 037178 100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TR--NLFQWNALVSGF 174 (311)
Q Consensus 100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~--~~~~y~~li~~~ 174 (311)
+..+...+...|++++|...++... +.. +.+...+..+..+|.+.|++++|...|++.. .. +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-HhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3333444444444444444444444 222 2233344444444555555555555544432 12 344555555555
Q ss_pred HhC-CChhhHHHHHHHhhh
Q 037178 175 TKN-ELYTDVLSIFVELSS 192 (311)
Q Consensus 175 ~~~-g~~~~a~~~~~~m~~ 192 (311)
.+. |++++|.+.+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 666666666555544
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=3.8e-05 Score=53.67 Aligned_cols=95 Identities=12% Similarity=-0.066 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
..|..+...+...|++++|...|++... ..| +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555666666666666666666554 123 34455555666666666666666666666553 334556666666
Q ss_pred HHHhcCCHHHHHHHHhhCCC
Q 037178 244 MYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~ 263 (311)
.|.+.|++++|.+.+++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666543
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.1e-05 Score=56.79 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHH
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVS 238 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 238 (311)
+...|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++...+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 445555566666666666666666666544 3344 3455555556666666666666666655543 2345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..+..+|...|++++|.+.|++..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666666544
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=1.6e-05 Score=55.18 Aligned_cols=91 Identities=9% Similarity=-0.120 Sum_probs=58.8
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHH
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R---NLVSWNSIICG 275 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~---~~~~y~~li~~ 275 (311)
..+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+ | +...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445555566666666666666666666554 33556666666677777777777777766542 2 35566667777
Q ss_pred HHhC-CCcchHHHHHHhh
Q 037178 276 FSEN-GFSCESFDLLIKM 292 (311)
Q Consensus 276 ~~~~-g~~~~a~~l~~~m 292 (311)
+... |++++|.+.+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HTTCSSCSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 7777 7777777777776
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=9.8e-06 Score=60.40 Aligned_cols=92 Identities=8% Similarity=-0.191 Sum_probs=45.2
Q ss_pred hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHH
Q 037178 99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFT 175 (311)
Q Consensus 99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~ 175 (311)
.+..+...+...|++++|...|+... ... +.+...|..+..+|.+.|++++|...|++.. ..+...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALC-VLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH-HcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 33444444445555555555555544 322 2234444445555555555555555555433 124445555555555
Q ss_pred hCCChhhHHHHHHHhhh
Q 037178 176 KNELYTDVLSIFVELSS 192 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~ 192 (311)
..|++++|...|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=4.1e-05 Score=67.23 Aligned_cols=192 Identities=11% Similarity=-0.061 Sum_probs=134.4
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCCh-----------------hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLK-----------------EATGVLLQACGHEKDIEIGKRVHELVSASTQFSN 131 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~ 131 (311)
...+.+.| ++++|++.|.+... .+... ..+..+...|...|++++|.+.+..+....+-.+
T Consensus 11 a~~l~~~~-~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEK-QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCC-CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567889 99999999999876 11111 1367788899999999999999988763222222
Q ss_pred hh----hHHHHHHHHHHhcCChhHHHHHHHhcCC--------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCC-
Q 037178 132 DF----IINTRLITMYSLCGFPLDSRRVFDSLKT--------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSD-TEL- 196 (311)
Q Consensus 132 ~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~--------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~- 196 (311)
+. .+.+.+-..+...|+.++|..+++.... . -..++..+...|...|++++|..++++.... .+.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 2333333444456888999888876531 1 1356788999999999999999999887541 111
Q ss_pred -CCC-cchHHHHHHHHhccCChhhHHHHHHHHHHh----CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 197 -KPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKM----GLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 197 -~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
++. ..+|..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 121 247888889999999999999999887643 21221 3567777778888899999888776554
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.12 E-value=9.4e-06 Score=59.86 Aligned_cols=86 Identities=13% Similarity=-0.044 Sum_probs=35.7
Q ss_pred HHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccC
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIA 214 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g 214 (311)
+...+.+.|++++|...|++.. ..+...|..+..+|.+.|++++|...|++... +.|+ ...+..+..++...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHcC
Confidence 3334444444444444444332 11333444444444444444444444444433 1221 223334444444444
Q ss_pred ChhhHHHHHHHHH
Q 037178 215 DVGFGSGVHGMAA 227 (311)
Q Consensus 215 ~~~~a~~~~~~m~ 227 (311)
++++|.+.++...
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=3e-05 Score=56.30 Aligned_cols=92 Identities=7% Similarity=-0.139 Sum_probs=43.0
Q ss_pred hhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHH
Q 037178 98 EATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGF 174 (311)
Q Consensus 98 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~ 174 (311)
..+..+...+...|++++|...++... ... +.+...+..+..+|...|++++|...|++.. ..+...|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH-hhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 334444444444444444444444444 222 2233344444444445555555554444432 12344555555555
Q ss_pred HhCCChhhHHHHHHHhh
Q 037178 175 TKNELYTDVLSIFVELS 191 (311)
Q Consensus 175 ~~~g~~~~a~~~~~~m~ 191 (311)
...|++++|...|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555555543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=4.2e-05 Score=53.46 Aligned_cols=90 Identities=8% Similarity=-0.011 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
|..+...+...| ++++|...|++... .+.+...+..+...+...|++++|...++... +.. +.+...+..+..+|.
T Consensus 7 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVG-NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHH
Confidence 444445555555 55555555555554 33344444444455555555555555555544 322 122334444444444
Q ss_pred hcCChhHHHHHHHh
Q 037178 145 LCGFPLDSRRVFDS 158 (311)
Q Consensus 145 ~~g~~~~A~~l~~~ 158 (311)
+.|++++|.+.|++
T Consensus 84 ~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 84 FLNRFEEAKRTYEE 97 (118)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 44444444444444
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=1.5e-05 Score=58.79 Aligned_cols=92 Identities=7% Similarity=-0.167 Sum_probs=49.9
Q ss_pred hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHH
Q 037178 99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFT 175 (311)
Q Consensus 99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~ 175 (311)
.+..+...+.+.|++++|...|+... ... +.+...|..+..+|.+.|++++|...|++.. ..+...|..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALC-MLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34444444555555555555555555 332 2344455555555556666666666555543 224455555666666
Q ss_pred hCCChhhHHHHHHHhhh
Q 037178 176 KNELYTDVLSIFVELSS 192 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~ 192 (311)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666544
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=1.5e-05 Score=56.99 Aligned_cols=94 Identities=10% Similarity=-0.015 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC--CCc----HHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL--IGD----VFVSNA 240 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 240 (311)
|..+...+...|++++|...|++... .. ..+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE-LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44444444455555555555554433 11 11233444444444555555555555544443321 011 344455
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 037178 241 LIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+...|.+.|++++|.+.|++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555555555555443
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.10 E-value=3e-05 Score=58.50 Aligned_cols=93 Identities=9% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM 244 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 244 (311)
.|..+...+.+.|++++|...|++..+ ..| +...|..+..++.+.|++++|...++...+.. +.+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344444444444555555555444433 122 23344444444455555555555555444443 2234445555555
Q ss_pred HHhcCCHHHHHHHHhhCC
Q 037178 245 YGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~ 262 (311)
|.+.|++++|.+.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 555555555555555444
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=3.4e-05 Score=67.80 Aligned_cols=188 Identities=8% Similarity=-0.172 Sum_probs=137.9
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCC-ch---------------hhHHHHHHHHHHhcCChhHHHHHHHhcCC-----C
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFS-ND---------------FIINTRLITMYSLCGFPLDSRRVFDSLKT-----R 162 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~-~~---------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~ 162 (311)
.+.+...|++++|.+.|..+. +..-. .+ ...+..|...|.+.|++++|.+.+....+ +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 344567899999999999988 43211 11 12467799999999999999999988752 1
Q ss_pred Ch----HHHHHHHHHHHhCCChhhHHHHHHHhhh---cCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCC---
Q 037178 163 NL----FQWNALVSGFTKNELYTDVLSIFVELSS---DTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGL--- 231 (311)
Q Consensus 163 ~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--- 231 (311)
+. ...+.+-..+...|+.++|..++++... ..+..+. ..++..+...+...|++++|..+++.+...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 2344444555567899999999887643 1333333 34677889999999999999999998765411
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 232 --IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-----RN-----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 232 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.....+|..++..|...|++++|..++++... ++ ...|..+...+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22357899999999999999999999987653 22 245677777888899999998888776
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=7.5e-06 Score=60.86 Aligned_cols=58 Identities=9% Similarity=-0.044 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----hHHHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLKT-----RN----LFQWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~-----~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
.++..+...|...|++++|...|++..+ .+ ...+..+...+...|++++|.+.+++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666666666655431 11 1245555555555666666666555543
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.08 E-value=6.4e-05 Score=54.46 Aligned_cols=96 Identities=6% Similarity=-0.095 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHH
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNAL 241 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 241 (311)
+...|..+...+...|++++|...|++... ..| +...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 344455555555555555555555555443 122 23445555555555555555555555555543 2344555555
Q ss_pred HHHHHhcCCHHHHHHHHhhCC
Q 037178 242 IAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~ 262 (311)
...|...|++++|...|++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555555555544
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3e-05 Score=55.56 Aligned_cols=95 Identities=6% Similarity=-0.067 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
..|..+...+.+.|++++|...|++..+ ..| +...|..+..++.+.|++++|...++...+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4577777888888888888888888765 334 45677788888888888888888888888775 446778888888
Q ss_pred HHHhcCCHHHHHHHHhhCCC
Q 037178 244 MYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~ 263 (311)
+|...|++++|.+.|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 88888888888888887654
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=2.4e-05 Score=55.89 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhh
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~ 191 (311)
.|..+...+.+.|++++|.+.|++..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.5e-05 Score=54.66 Aligned_cols=91 Identities=4% Similarity=-0.134 Sum_probs=43.9
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHh
Q 037178 100 TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTK 176 (311)
Q Consensus 100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~ 176 (311)
|......+.+.|++++|...|++.. +.. +.+...|..+..+|.+.|++++|...|++.. ..+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333444444455555555555444 222 2234444445555555555555555554432 1234455555555555
Q ss_pred CCChhhHHHHHHHhhh
Q 037178 177 NELYTDVLSIFVELSS 192 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~ 192 (311)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=4.9e-05 Score=54.87 Aligned_cols=91 Identities=7% Similarity=-0.013 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--------chH
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--------FTF 203 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~t~ 203 (311)
.+..|...+.+.|++++|...|++.. ..+...|+.+..+|.+.|++++|++.|++..+ +.|+. .+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHHHH
Confidence 34445555555555555555555432 22445555555566666666666655555433 11111 133
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHH
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
..+-.++...|++++|.+.++...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444555555555555555444
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=2.6e-05 Score=55.86 Aligned_cols=93 Identities=9% Similarity=-0.016 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.+..+...+.+.| ++++|+..|++..+ .+.+...|..+..++...|+.++|...+++.. +.. +.+...+..+..+|
T Consensus 19 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHH
Confidence 4556667788888 89999998888888 55567778888888888888888888888887 544 33456677788888
Q ss_pred HhcCChhHHHHHHHhcC
Q 037178 144 SLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~ 160 (311)
.+.|++++|...|++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 88888888888887754
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=9.3e-05 Score=54.15 Aligned_cols=96 Identities=9% Similarity=-0.090 Sum_probs=73.9
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCC----hhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLHNADL----KEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINT 137 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~ 137 (311)
+...|..+...+...| ++++|...|++..+..|+ ...+..+...+...|++++|...++... +.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCG-DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hhC-ccCHHHHH
Confidence 4456778888888999 999999999998885555 5677777778888888888888888887 443 33556666
Q ss_pred HHHHHHHhcCChhHHHHHHHhcC
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
.+..+|...|++++|...|++..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 77778888888888888877654
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.04 E-value=2.8e-05 Score=58.66 Aligned_cols=92 Identities=12% Similarity=-0.027 Sum_probs=48.7
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
.|..+-..+.+.| ++++|+..|++... .+.+...|..+..++...|++++|...++... +.. +.+...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARK-EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHH
Confidence 4555555555666 66666666666555 33344555555555555555555555555555 332 22344444455555
Q ss_pred HhcCChhHHHHHHHhc
Q 037178 144 SLCGFPLDSRRVFDSL 159 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m 159 (311)
.+.|++++|...|++.
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 5555555555555443
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=3.5e-05 Score=69.14 Aligned_cols=114 Identities=7% Similarity=-0.119 Sum_probs=56.3
Q ss_pred hcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhh
Q 037178 106 ACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTD 182 (311)
Q Consensus 106 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~ 182 (311)
.+.+.|++++|.+.+++.. +.. +.+..+|..+..+|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAI-ELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4455666666666666665 332 2234555555666666666666666655543 1244555555555555566666
Q ss_pred HHHHHHHhhhcCCCCCC-cchHHHHHHH--HhccCChhhHHHHHH
Q 037178 183 VLSIFVELSSDTELKPD-NFTFPCVIKA--CGGIADVGFGSGVHG 224 (311)
Q Consensus 183 a~~~~~~m~~~~~~~p~-~~t~~~li~~--~~~~g~~~~a~~~~~ 224 (311)
|.+.|++..+ ..|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6655555544 1222 1223233222 444555555555544
No 167
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.03 E-value=0.00035 Score=58.62 Aligned_cols=199 Identities=10% Similarity=0.023 Sum_probs=149.3
Q ss_pred ccHHHHHHHHHhcC-CCHHHHHHHHHhhcc-CCCChhhHHHHHHhc----ccC---CChhHHHHHHHHHHhhcCCCchhh
Q 037178 64 LHFLQEITTLCEES-KSLNKALSLLQENLH-NADLKEATGVLLQAC----GHE---KDIEIGKRVHELVSASTQFSNDFI 134 (311)
Q Consensus 64 ~~~~~li~~~~~~g-~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~g~~~~~~ 134 (311)
..||.--..+...| ..++++++.++.+.. .+-+..+|+.--..+ ... ++++++..+++.+. +.. +.+..
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l-~~~-pkny~ 145 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML-SSD-PKNHH 145 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH-HHC-TTCHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH-HhC-CCCHH
Confidence 34666555555555 489999999999998 555556665544443 334 78999999999999 554 56778
Q ss_pred HHHHHHHHHHhcCChh--HHHHHHHhcCC---CChHHHHHHHHHHHhCCC------hhhHHHHHHHhhhcCCCCC-Ccch
Q 037178 135 INTRLITMYSLCGFPL--DSRRVFDSLKT---RNLFQWNALVSGFTKNEL------YTDVLSIFVELSSDTELKP-DNFT 202 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~--~A~~l~~~m~~---~~~~~y~~li~~~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~t 202 (311)
+|+.-.-.+.+.|.++ ++++.++++.+ .|-.+|+.-...+.+.|+ ++++++.++++.. ..| |...
T Consensus 146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~Sa 222 (306)
T 3dra_A 146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPST 222 (306)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccH
Confidence 8888888888889888 99999998874 477888887777777776 8899999998876 345 4566
Q ss_pred HHHHHHHHhccCChhh-HHHHHHHHHHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh
Q 037178 203 FPCVIKACGGIADVGF-GSGVHGMAAKMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-RNLV 267 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 267 (311)
|+.+-..+.+.|+... +..+...+.+.+ -+.+...+..+.+.|.+.|+.++|.++++.+.+ -|++
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 7777777777777444 555666655432 134778999999999999999999999999874 3543
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=3.3e-05 Score=68.90 Aligned_cols=118 Identities=12% Similarity=-0.010 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcCC--C-C---------------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLKT--R-N---------------LFQWNALVSGFTKNELYTDVLSIFVELSSDTE 195 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~--~-~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~ 195 (311)
..+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--- 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 3455556666666666666666665431 1 2 35556666666666666666666666544
Q ss_pred CCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 196 LKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 196 ~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
+.| +...|..+-.++...|++++|...|++..+.. +-+..++..+..++.+.|+.+++.
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 223 23455555556666666666666666555443 224455555555555555555544
No 169
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.02 E-value=0.00063 Score=61.19 Aligned_cols=201 Identities=12% Similarity=-0.018 Sum_probs=140.0
Q ss_pred HHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHH-HHHHH
Q 037178 80 LNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDS-RRVFD 157 (311)
Q Consensus 80 ~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A-~~l~~ 157 (311)
.+.+..+|+++.. .+.+...|...+..+.+.|+++.|..+++... .. +.+...+. .|+...+.++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~--P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM--SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC--CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 3457788999888 77778888888888889999999999999999 55 44443333 23332222222 12222
Q ss_pred hcC--C-------C---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHH--HHHHHHhccCChhhHHHHH
Q 037178 158 SLK--T-------R---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFP--CVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 158 ~m~--~-------~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~--~li~~~~~~g~~~~a~~~~ 223 (311)
... + + ....|-..+.-..+.|..+.|..+|++... .+ .+...|. +.+...+ .++.+.|..+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~-~~--~~~~v~i~~A~lE~~~-~~d~~~ar~if 343 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGN-EG--VGPHVFIYCAFIEYYA-TGSRATPYNIF 343 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHH-HCCSHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC-CC--CChHHHHHHHHHHHHH-CCChHHHHHHH
Confidence 211 0 1 124566677776677889999999999832 22 2223333 2222222 33799999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhhh
Q 037178 224 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKMM 293 (311)
Q Consensus 224 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 293 (311)
+...+.. +-+...+...++...+.|+.+.|..+|+... .....|...+.--...|+.+.+.++++++.
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9988764 3345567778888899999999999999985 467789999888888999999999998883
No 170
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.01 E-value=8.2e-05 Score=61.37 Aligned_cols=136 Identities=9% Similarity=-0.084 Sum_probs=101.0
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC-C----hHHHHHHHHHHH
Q 037178 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR-N----LFQWNALVSGFT 175 (311)
Q Consensus 101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~----~~~y~~li~~~~ 175 (311)
......+...|++++|.++|+.+. ..+ |+....-.+-..+.+.|++++|+..|+...+. + ...+..+-.++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~-~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAP-VAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSC-CTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-hcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 345566778899999999998887 433 43335555677888999999999999866542 2 346788888999
Q ss_pred hCCChhhHHHHHHHhhhcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178 176 KNELYTDVLSIFVELSSDTELKPDN--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 242 (311)
+.|++++|++.|++... ....|.. ......-.++.+.|+.++|..+|+++.... |+..++..|.
T Consensus 183 ~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 183 NLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 99999999999999875 4433542 345667777889999999999999998875 3355555543
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=3.4e-05 Score=57.19 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=24.9
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhhcCC---Cc--hhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178 100 TGVLLQACGHEKDIEIGKRVHELVSASTQF---SN--DFIINTRLITMYSLCGFPLDSRRVFDS 158 (311)
Q Consensus 100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~---~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~ 158 (311)
+..+...+...|++++|...+++.. +..- .+ -..++..+...|...|++++|.+.|++
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444555555555554444 2110 00 012344444455555555555554444
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=4.5e-05 Score=59.49 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCC-Ch----------------hhHHHHHHhcccCCChhHHHHHHHHHHhh
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNAD-LK----------------EATGVLLQACGHEKDIEIGKRVHELVSAS 126 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~-~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 126 (311)
..|..+-..+...| ++++|+..|++.....| +. ..|..+..++...|++++|...++... +
T Consensus 39 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~ 116 (198)
T 2fbn_A 39 FDIKEEGNEFFKKN-EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL-K 116 (198)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H
Confidence 35677778888999 99999999999887222 22 334444444444444444444444444 2
Q ss_pred cCCCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDS 158 (311)
Q Consensus 127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 158 (311)
.. +.+...+..+..+|...|++++|.+.|++
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 21 22233333344444444444444444443
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=3.6e-05 Score=65.76 Aligned_cols=122 Identities=5% Similarity=-0.093 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc------------------chHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDN------------------FTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~------------------~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
|..+...+.+.|++++|...|++... ..|+. ..|..+..++.+.|++++|...++...+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555433 22322 2678888899999999999999999988
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH-HHhCCCcchHHHHHHhh
Q 037178 229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICG-FSENGFSCESFDLLIKM 292 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~-~~~~g~~~~a~~l~~~m 292 (311)
.. +.+...|..+..+|...|++++|...|++..+ | +..++..+... ....+..+++.++|.+|
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75 45788999999999999999999999999986 3 34455555554 34566778888899888
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00014 Score=52.04 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=45.7
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc----hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc---HHHHHHHH
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSDTELKPDNF----TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD---VFVSNALI 242 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li 242 (311)
+...+.+.|++++|...|++..+ ..|+.. .+..+..++.+.|++++|...++...+.. +.+ ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE---LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 33444555555555555555543 123222 44445555555556666665555555543 112 34455555
Q ss_pred HHHHhcCCHHHHHHHHhhCC
Q 037178 243 AMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+|.+.|++++|...|++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55556666666666555544
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.94 E-value=4.1e-05 Score=54.80 Aligned_cols=84 Identities=4% Similarity=-0.117 Sum_probs=35.9
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE 284 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~ 284 (311)
..+.+.|++++|...++...+.. +.+...|..+..++.+.|++++|...|++..+ | +...|..+...|.+.|++++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444444444444444444432 22344444444444444444444444444332 2 22344444444444444444
Q ss_pred HHHHHHhh
Q 037178 285 SFDLLIKM 292 (311)
Q Consensus 285 a~~l~~~m 292 (311)
|.+.+++.
T Consensus 104 A~~~~~~a 111 (121)
T 1hxi_A 104 ALASLRAW 111 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=4.5e-05 Score=55.09 Aligned_cols=59 Identities=8% Similarity=-0.089 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
++..+...+.+.|++++|++.|++..+ +.|+ ...|..+-.++.+.|++++|.+.++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555555555555443 2232 2334444444555555555555444443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.87 E-value=2.6e-05 Score=69.98 Aligned_cols=118 Identities=7% Similarity=-0.076 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC 146 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~ 146 (311)
.+-..+.+.| ++++|++.|++..+ .+.+...|..+..++.+.|++++|...+++.. +.. +.+...+..+..+|.+.
T Consensus 11 ~lg~~~~~~g-~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHc
Confidence 3344556788 99999999999999 66668899999999999999999999999998 654 44677888899999999
Q ss_pred CChhHHHHHHHhcCC--C-ChHHHHHHHHH--HHhCCChhhHHHHHH
Q 037178 147 GFPLDSRRVFDSLKT--R-NLFQWNALVSG--FTKNELYTDVLSIFV 188 (311)
Q Consensus 147 g~~~~A~~l~~~m~~--~-~~~~y~~li~~--~~~~g~~~~a~~~~~ 188 (311)
|++++|.+.|++..+ | +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998652 3 44566666665 888899999999998
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.00013 Score=65.12 Aligned_cols=143 Identities=9% Similarity=-0.112 Sum_probs=95.1
Q ss_pred cCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----------------cchHHHH
Q 037178 146 CGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----------------NFTFPCV 206 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----------------~~t~~~l 206 (311)
.+++++|...|+...+ .....|..+...+.+.|++++|...|++..+ +.|+ ...|..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS---WLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HhcccccCChHHHHHHHHHHHHHHHHH
Confidence 3445555555543321 2455677777777788888888888877655 2333 3567777
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcc
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSC 283 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~ 283 (311)
..++.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...|++..+ | +..+|..+...+.+.|+.+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 777778888888888887777765 44677777777788888888888888877764 2 4456777777777777776
Q ss_pred hHHH-HHHhh
Q 037178 284 ESFD-LLIKM 292 (311)
Q Consensus 284 ~a~~-l~~~m 292 (311)
++.+ +++.|
T Consensus 403 ~a~~~~~~~~ 412 (457)
T 1kt0_A 403 ERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6653 44544
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=0.00015 Score=62.65 Aligned_cols=118 Identities=8% Similarity=-0.037 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-------------------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT-------------------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTE 195 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~-------------------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~ 195 (311)
.+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|.+.+++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence 456677777888888888887776543 1345677777788888888888888877765
Q ss_pred CCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037178 196 LKPD-NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 196 ~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (311)
+.|+ ...|..+..++...|++++|.+.+++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 4567777777778888888888887777664 3356666777777777776666654
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.80 E-value=2.3e-05 Score=55.55 Aligned_cols=82 Identities=6% Similarity=-0.137 Sum_probs=42.6
Q ss_pred CCChhHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHH
Q 037178 110 EKDIEIGKRVHELVSASTQ--FSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVL 184 (311)
Q Consensus 110 ~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~ 184 (311)
.|++++|...|++.. +.+ -+.+...+..+..+|.+.|++++|...|++.. ..+...|..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666665 432 12234455555556666666666666665543 124455555555666666666666
Q ss_pred HHHHHhhh
Q 037178 185 SIFVELSS 192 (311)
Q Consensus 185 ~~~~~m~~ 192 (311)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=1.6e-05 Score=56.38 Aligned_cols=84 Identities=8% Similarity=-0.063 Sum_probs=40.0
Q ss_pred CCChhhHHHHHHHhhhcCCC-CC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037178 177 NELYTDVLSIFVELSSDTEL-KP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~-~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 254 (311)
.|++++|...|++..+ .+. .| +...+..+...+...|++++|...+++..+.. +-+..++..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3455555555555544 210 12 22344455555555555555555555555543 23445555555555555555555
Q ss_pred HHHHhhCC
Q 037178 255 VKLFEVMP 262 (311)
Q Consensus 255 ~~~~~~m~ 262 (311)
...|++..
T Consensus 81 ~~~~~~al 88 (117)
T 3k9i_A 81 VELLLKII 88 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=7e-05 Score=67.16 Aligned_cols=121 Identities=7% Similarity=-0.177 Sum_probs=92.0
Q ss_pred HHHHhCCChhhHHHHHHHhhhc--CCCCCC----cchHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCCcHHHH
Q 037178 172 SGFTKNELYTDVLSIFVELSSD--TELKPD----NFTFPCVIKACGGIADVGFGSGVHGMAAKM-----G--LIGDVFVS 238 (311)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~--~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~~~ 238 (311)
..+...|++++|..++++..+. .-+.|+ ..+++.|..+|...|++++|..++++..+- | .+-...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999998876431 223333 257889999999999999999988887643 2 22246788
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------C---Ch-hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 239 NALIAMYGKCAFVEEMVKLFEVMPE-------R---NL-VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~-------~---~~-~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+.|...|...|++++|+.++++..+ + ++ .+.+.+-.++...+++++|+.++.++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887763 2 22 35677778888899999999999998
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.76 E-value=0.0037 Score=52.89 Aligned_cols=213 Identities=8% Similarity=-0.049 Sum_probs=147.1
Q ss_pred HHhcCCCHHHHHHHHHhhccCCCChh-hHHHHHHhcccCCC----------hhHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 037178 73 LCEESKSLNKALSLLQENLHNADLKE-ATGVLLQACGHEKD----------IEIGKRVHELVSASTQFSNDFIINTRLIT 141 (311)
Q Consensus 73 ~~~~g~~~~~a~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~g~~~~~~~~~~ll~ 141 (311)
..+.|...++|+++++.+....|+.. .|+.--..+...+. ++++..+++.+. ... +-+..+|+.---
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L-~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH-HhC-CCCHHHHHHHHH
Confidence 34556244589999999999555544 45543333333232 578888888888 544 557778887777
Q ss_pred HHHhcC--ChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCC-hhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc-
Q 037178 142 MYSLCG--FPLDSRRVFDSLKT---RNLFQWNALVSGFTKNEL-YTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI- 213 (311)
Q Consensus 142 ~~~~~g--~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~- 213 (311)
.+.+.| .++++..+++.+.+ +|-.+|+.-.-.+...|. ++++++.++++.+ . .| |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~--~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-R--NFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHHS
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHhh
Confidence 777877 48999999998863 577889888888888888 5899999999877 3 34 344455444444433
Q ss_pred -------------CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHhhCCC--CChh
Q 037178 214 -------------ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-----------AFVEEMVKLFEVMPE--RNLV 267 (311)
Q Consensus 214 -------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~--~~~~ 267 (311)
+.++++.+.+....... +-|...|+-+-..+.+. +.++++.+.++++.+ ||-
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 45788888888888776 66888888776666665 467889999988874 654
Q ss_pred hHHHHHH-----HHHhCCCcchHHHHHHhh
Q 037178 268 SWNSIIC-----GFSENGFSCESFDLLIKM 292 (311)
Q Consensus 268 ~y~~li~-----~~~~~g~~~~a~~l~~~m 292 (311)
.|+.+-. +.-..|..+++...+.++
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3443222 222456777888888877
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.74 E-value=0.00035 Score=49.85 Aligned_cols=54 Identities=9% Similarity=0.006 Sum_probs=24.9
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCCh---hhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLK---EATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
...+.+.| ++++|...|++... .+.+. ..+..+..++...|++++|...++.+.
T Consensus 9 a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 9 AFDALKNG-KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555 55555555555544 22222 234444444444555555555555444
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.64 E-value=0.00016 Score=61.70 Aligned_cols=143 Identities=8% Similarity=-0.163 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
.|..+-..+.+.| ++++|+..|++.....|+... +...++.+++.. .+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g-~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~---~l~--------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEE-KLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMAL---AVK--------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSS-CCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHH---HHH--------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHH---HHH--------HHHHHHHHHHHH
Confidence 4666667777788 888888888887763343321 112222222211 111 135666777888
Q ss_pred hcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHH-HhccCChhhH
Q 037178 145 LCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFPCVIKA-CGGIADVGFG 219 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~-~~~~g~~~~a 219 (311)
+.|++++|...|++.. ..+...|..+..+|...|++++|...|++..+ +.|+. ..+..+... ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887754 23667788888888888888888888888754 44543 334444333 2344566677
Q ss_pred HHHHHHHHHh
Q 037178 220 SGVHGMAAKM 229 (311)
Q Consensus 220 ~~~~~~m~~~ 229 (311)
..++..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777654
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=5.6e-05 Score=52.49 Aligned_cols=92 Identities=9% Similarity=-0.075 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch-------hhH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSND-------FII 135 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-------~~~ 135 (311)
..|..+-..+...| ++++|+..|++..+ .+.+...+..+..++...|++++|...++... +.. |+ ...
T Consensus 5 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 5 EKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC--CCccHHHHHHHH
Confidence 34566666677777 77777777777766 44556666666667777777777777777766 332 22 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhc
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m 159 (311)
+..+..++...|+.+.|...|+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 444555555555555555544443
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=5.2e-05 Score=52.66 Aligned_cols=90 Identities=2% Similarity=-0.277 Sum_probs=46.2
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------hhhHHHH
Q 037178 202 TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RN-------LVSWNSI 272 (311)
Q Consensus 202 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-------~~~y~~l 272 (311)
.+..+...+...|++++|.+.++...+.. +.+...+..+..+|.+.|++++|.+.+++..+ |+ ...+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 34444455555555555555555555443 33455555555566666666666666655543 22 2334444
Q ss_pred HHHHHhCCCcchHHHHHHhh
Q 037178 273 ICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 273 i~~~~~~g~~~~a~~l~~~m 292 (311)
..++...|+.+.|.+.++++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHhHhhhHhHHHHh
Confidence 44555555555554444433
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.61 E-value=0.00049 Score=51.49 Aligned_cols=93 Identities=9% Similarity=-0.062 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-------------cchHHHHHHHHhccCChhhHHHHHHHHHHh----
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPD-------------NFTFPCVIKACGGIADVGFGSGVHGMAAKM---- 229 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---- 229 (311)
+......+.+.|++++|+..|++..+ +.|+ ...|..+-.++.+.|++++|...+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34445556666777777777766654 2333 116666777777777777777777776664
Q ss_pred -CCCC-cHHHH----HHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 230 -GLIG-DVFVS----NALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 230 -g~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+.| +...| .....++...|++++|...|++..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 1123 45566 777777778888888888777654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00015 Score=62.74 Aligned_cols=122 Identities=6% Similarity=-0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcC-------------CCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDT-------------ELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 230 (311)
..|..+...+.+.|++++|...|++..+.. ...| +...|..+..++.+.|++++|.+.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 457888899999999999999998875300 0223 34678888899999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHH
Q 037178 231 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
+.+...|..+..+|.+.|++++|.+.|++..+ | +...+..+...+...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788899999999999999999999998874 4 55677777777777776666554
No 190
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.58 E-value=0.0042 Score=59.00 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=116.7
Q ss_pred HHHHHhcCCCHHHHHH-HHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 70 ITTLCEESKSLNKALS-LLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~-~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
.......+ ++++|.+ ++..+. +......+++.+.+.|..+.|.++.+.-. .-.......|+
T Consensus 606 ~~~~~~~~-~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRG-EIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTT-CHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTC
T ss_pred HhHHHHhC-CHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCC
Confidence 34445678 9999987 553333 12333777777788888888776653221 11345577899
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 149 PLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 149 ~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
+++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988774 557899999999999999999999999976 66777777778888887777777666
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
.| -++....+|.+.|++++|.+++.++.+
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 66 235555667778888888888888776
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.57 E-value=0.00048 Score=51.60 Aligned_cols=60 Identities=7% Similarity=-0.116 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
..+|..+..+|.+.|++++|...+++.. ..+...|..+..+|...|++++|...|++...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3455556666666666666666665543 23455566666666666666666666666544
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.55 E-value=0.00059 Score=51.08 Aligned_cols=62 Identities=6% Similarity=-0.115 Sum_probs=41.1
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 201 FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..|..+..++.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 456666666667777777777777666654 44566666677777777777777777766553
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00013 Score=65.36 Aligned_cols=97 Identities=2% Similarity=-0.238 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCC----------C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc--CCCCCC
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKT----------R-NLFQWNALVSGFTKNELYTDVLSIFVELSSD--TELKPD 199 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----------~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~p~ 199 (311)
..+++.|...|...|++++|+.++++..+ | ...+++.|...|...|++++|..++++..+- .-..||
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555566666666666666555554321 1 2245666666666666666666666554220 112232
Q ss_pred c----chHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 200 N----FTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 200 ~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
. .+...+-.++...+.+++|+.++.++++.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23445555666677777777777776653
No 194
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.40 E-value=0.0041 Score=52.91 Aligned_cols=201 Identities=13% Similarity=-0.024 Sum_probs=139.6
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccC-C-ChhHHHHHHHHHHhhcCCCchhhHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHE-K-DIEIGKRVHELVSASTQFSNDFIINTR 138 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~g~~~~~~~~~~ 138 (311)
+...||.--..+...|..+++++++++.+.. .+-+..+|+.-...+.+. + +.+++.++++.+. +.. +.+..+|+.
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L-~~d-pkNy~AW~~ 164 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL-LPD-PKNYHTWAY 164 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT-SSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HhC-CCCHHHHHH
Confidence 4445777666666667249999999999998 666667777766665555 5 7899999999998 544 557777776
Q ss_pred HHHHHHhcCChh--------HHHHHHHhcCC---CChHHHHHHHHHHHhCCC-------hhhHHHHHHHhhhcCCCCCC-
Q 037178 139 LITMYSLCGFPL--------DSRRVFDSLKT---RNLFQWNALVSGFTKNEL-------YTDVLSIFVELSSDTELKPD- 199 (311)
Q Consensus 139 ll~~~~~~g~~~--------~A~~l~~~m~~---~~~~~y~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~p~- 199 (311)
-.-.+.+.|.++ ++.+.++++.+ .|..+|+.....+.+.++ ++++++.+++... ..|+
T Consensus 165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n 241 (349)
T 3q7a_A 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHN 241 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTC
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCC
Confidence 666666666666 88888887763 478899998888888876 6888888888765 4454
Q ss_pred cchHHHHHHHHhccCCh--------------------hhHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHhcCCHHHH
Q 037178 200 NFTFPCVIKACGGIADV--------------------GFGSGVHGMAAKMG-----LIGDVFVSNALIAMYGKCAFVEEM 254 (311)
Q Consensus 200 ~~t~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A 254 (311)
...|+-+-..+.+.|+- .....+...+...+ -.++......+.+.|...|+.++|
T Consensus 242 ~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a 321 (349)
T 3q7a_A 242 VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDA 321 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHH
Confidence 44555544444444432 22333333332222 135788999999999999999999
Q ss_pred HHHHhhCC-CCChh
Q 037178 255 VKLFEVMP-ERNLV 267 (311)
Q Consensus 255 ~~~~~~m~-~~~~~ 267 (311)
.++++.+. +-|++
T Consensus 322 ~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 322 AKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHTTCGG
T ss_pred HHHHHHHHhhhChH
Confidence 99999986 44553
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.38 E-value=0.0046 Score=56.52 Aligned_cols=174 Identities=9% Similarity=-0.077 Sum_probs=126.9
Q ss_pred HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCC----------hhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKD----------IEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
.+.|...++|++.++++.. .+-+...|+.--..+...|+ ++++.+.++.+. +.. +-+..+|+.---+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l-~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH-HhC-CCCHHHHHHHHHH
Confidence 3445256788999999998 44445567665555555565 889999999998 554 4567788878888
Q ss_pred HHhcC--ChhHHHHHHHhcC---CCChHHHHHHHHHHHhCC-ChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhcc--
Q 037178 143 YSLCG--FPLDSRRVFDSLK---TRNLFQWNALVSGFTKNE-LYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGI-- 213 (311)
Q Consensus 143 ~~~~g--~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~-- 213 (311)
+.+.| +++++.+.++++. .+|-.+|+.-..++.+.| .++++++.++++.+ ..| |...|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhcc
Confidence 88888 6799999999886 357788988888888888 88999999988866 344 344555555554442
Q ss_pred ------------CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 037178 214 ------------ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE 253 (311)
Q Consensus 214 ------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 253 (311)
+.++++.+.+....... +-|...|+-+-..+.+.|+.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55677888888777765 5577888888777777776444
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.36 E-value=0.0016 Score=48.70 Aligned_cols=58 Identities=7% Similarity=0.016 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCCC--------hh-----hHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLHNADL--------KE-----ATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~--------~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
+...-..+.+.| ++++|+..|++..+..|+ .. .|.....++.+.|++++|...++...
T Consensus 14 ~~~~G~~l~~~g-~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 14 ALSDAQRQLVAG-EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666777888 999999999988883333 11 44445555555555555555555544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.35 E-value=0.0019 Score=47.09 Aligned_cols=111 Identities=7% Similarity=-0.035 Sum_probs=80.4
Q ss_pred CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHH
Q 037178 178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGK----CAFVEE 253 (311)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 253 (311)
+++++|++.|++..+ .| +.... +-..|...+.+++|.+.++...+.| +...+..|-..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~-~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHc-CC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 467788888888776 55 22222 5566666677778888888877765 56677777777777 778888
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHh----CCCcchHHHHHHhhhhccCCC
Q 037178 254 MVKLFEVMPE-RNLVSWNSIICGFSE----NGFSCESFDLLIKMMGCEEGF 299 (311)
Q Consensus 254 A~~~~~~m~~-~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~~~g~ 299 (311)
|.+.|++..+ -+...+..|-..|.. .++.++|.++|++. .+.|.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A--a~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA--CRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH--HHCCC
Confidence 8888887764 466677777778877 78888888888887 55553
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.27 E-value=0.0013 Score=43.46 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
..|..+-..+...| ++++|+..|++... .+.+...+..+...+...|++++|...+++.. +.. +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCHHHHHHHHHH
Confidence 44566666677777 77777777777766 44455666666667777777777777777766 432 2234444444444
Q ss_pred HHh
Q 037178 143 YSL 145 (311)
Q Consensus 143 ~~~ 145 (311)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.23 E-value=0.0014 Score=45.75 Aligned_cols=77 Identities=5% Similarity=-0.191 Sum_probs=40.1
Q ss_pred hHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 182 DVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 182 ~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+|...|++..+ ..| +...+..+...+...|++++|...+++..+.. +.+...|..+...|.+.|++++|...|++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444554433 223 23445555555555556666665555555543 33445555555666666666666665555
Q ss_pred CC
Q 037178 261 MP 262 (311)
Q Consensus 261 m~ 262 (311)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.19 E-value=0.003 Score=41.54 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM 244 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 244 (311)
.|..+...+...|++++|...|++..+ . .| +...+..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE-L--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344444444555555555555554433 1 12 22344444444555555555555555544442 2233344444433
Q ss_pred H
Q 037178 245 Y 245 (311)
Q Consensus 245 ~ 245 (311)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.046 Score=41.38 Aligned_cols=130 Identities=12% Similarity=-0.021 Sum_probs=96.9
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
.....+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.--|.-.|+.+..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 34556789999999988877 4667899999999999999999999998876 66666677778888877
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
.++-+.....| -++.....+.-.|+++++.++|.+..... --+...-..|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 77766666665 24566666777899999999998877622 1222223367778888888777
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.0026 Score=44.37 Aligned_cols=75 Identities=7% Similarity=-0.043 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 116 GKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 116 a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
+...++... +.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAML-AQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHH-TTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444 222 2334455555555555566666555555543 22444555566666666666666666665543
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.0019 Score=44.09 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHH
Q 037178 164 LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGSGVHGMAA 227 (311)
Q Consensus 164 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 227 (311)
...|..+...|.+.|++++|...|++..+ ..|+ ...|..+..++...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE---TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555554443 1222 2334444444444444444444444433
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.04 E-value=0.0007 Score=59.68 Aligned_cols=81 Identities=7% Similarity=-0.100 Sum_probs=63.4
Q ss_pred ccCChhhHHHHHHHHHHhC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCh-hhHHHHH
Q 037178 212 GIADVGFGSGVHGMAAKMG---LIG----DVFVSNALIAMYGKCAFVEEMVKLFEVMPE----------RNL-VSWNSII 273 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~-~~y~~li 273 (311)
..|++++|..++++..+.. +.+ ...+++.|...|...|++++|+.++++..+ |++ .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888998888876531 112 357888999999999999999998888763 333 5789999
Q ss_pred HHHHhCCCcchHHHHHHhh
Q 037178 274 CGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 274 ~~~~~~g~~~~a~~l~~~m 292 (311)
..|...|++++|..++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999988877
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.98 E-value=0.0016 Score=44.39 Aligned_cols=62 Identities=10% Similarity=-0.022 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
+...|..+-..+.+.| ++++|+..|++..+ .+.+...|..+..++...|++++|...+++..
T Consensus 6 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445666677777777 77777777777777 44455667777777777777777777777666
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.91 E-value=0.015 Score=53.13 Aligned_cols=167 Identities=4% Similarity=-0.108 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC----------hhHHHHHHHhcCC---CChHHHHHHHHHHHhCC
Q 037178 112 DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF----------PLDSRRVFDSLKT---RNLFQWNALVSGFTKNE 178 (311)
Q Consensus 112 ~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g 178 (311)
.-++|.+.++.+. ..+ +-+..+|+.--.++.+.|+ ++++.+.++.+.+ .+-.+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l-~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQIL-GAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHH-HHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 3467899999988 554 3445667766666666666 8999999998763 47778888888888888
Q ss_pred --ChhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc------
Q 037178 179 --LYTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC------ 248 (311)
Q Consensus 179 --~~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------ 248 (311)
+++++++.++++.+ ..| |-..|+.--.++.+.| .++++.+.++.+.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 66999999999987 334 4566777767777778 8889999998888775 45788888888777763
Q ss_pred --------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcch
Q 037178 249 --------AFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCE 284 (311)
Q Consensus 249 --------g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~ 284 (311)
++++++.+.+++..+ | |..+|+-+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557888888887763 4 66788877777777776444
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.89 E-value=0.015 Score=42.27 Aligned_cols=88 Identities=6% Similarity=-0.121 Sum_probs=42.2
Q ss_pred HHHHHHhcCChhHHHHHHHhcC-CCChHHHHHHHHHHHh----CCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc-
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK-TRNLFQWNALVSGFTK----NELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG- 212 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~-~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~- 212 (311)
|-..|...+.+++|.+.|++.. ..+...+..|-..|.. .+++++|++.|++..+ .| +...+..|-..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-LN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHCC
Confidence 3333334444444444444432 2244444444444444 4555555555555544 32 33344444444444
Q ss_pred ---cCChhhHHHHHHHHHHhC
Q 037178 213 ---IADVGFGSGVHGMAAKMG 230 (311)
Q Consensus 213 ---~g~~~~a~~~~~~m~~~g 230 (311)
.++.++|.++++...+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 455666666666555554
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.87 E-value=0.018 Score=51.68 Aligned_cols=183 Identities=10% Similarity=-0.060 Sum_probs=122.4
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhc--C------C---Cc
Q 037178 63 GLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSAST--Q------F---SN 131 (311)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--g------~---~~ 131 (311)
...|-..+.-+.+.| +++.|..+|++.... |....+......+.. .++ +++.+.+.. + . ..
T Consensus 213 ~~lW~~ya~~~~~~~-~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e---~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIG-QKEKAKKVVERGIEM-SDGMFLSLYYGLVMD---EEA---VYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT---CTH---HHHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc---hhH---HHHHHHHHHHhhccchhhhhcccc
Confidence 456777777788889 999999999998887 665543222111111 122 133333111 0 0 11
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCC--hHHHH--HHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHH
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRN--LFQWN--ALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCV 206 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~l 206 (311)
...+|-..+..+-+.|..+.|.++|++...+. ...|- +.+.... .++.+.|..+|+...+.. |+ ...+...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~---~~~~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH---PDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC---CCCHHHHHHH
Confidence 23567777777777889999999999884342 23343 3333322 236999999999987622 33 2335556
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
++-..+.|+.+.|..+|+.+ .-....|...++.-...|+.+.+.++++++.
T Consensus 361 id~e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77778889999999999986 2367889999998888999999999888765
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.84 E-value=0.0017 Score=57.20 Aligned_cols=86 Identities=10% Similarity=-0.115 Sum_probs=53.0
Q ss_pred HHHHhccCChhhHHHHHHHHHHhC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCh-hh
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMG---LIG----DVFVSNALIAMYGKCAFVEEMVKLFEVMPE----------RNL-VS 268 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~-~~ 268 (311)
+..+.+.|++++|..++++..+.. +.+ ...+++.|...|...|++++|+.++++..+ |++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344555667777777776665431 111 245666777777777777777777666553 222 45
Q ss_pred HHHHHHHHHhCCCcchHHHHHHhh
Q 037178 269 WNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 269 y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|+.|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 677777777777777777776665
No 210
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.80 E-value=0.041 Score=46.48 Aligned_cols=185 Identities=5% Similarity=-0.047 Sum_probs=129.3
Q ss_pred cCCCh-hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC----------hhHHHHHHHhcC---CCChHHHHHHHHHH
Q 037178 109 HEKDI-EIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF----------PLDSRRVFDSLK---TRNLFQWNALVSGF 174 (311)
Q Consensus 109 ~~~~~-~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~---~~~~~~y~~li~~~ 174 (311)
+.|.+ ++|..+.+.+. ..+ +-+..+|+.--..+...|. +++++.+++.+. ..+-.+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L-~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQIL-GAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHH-TTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-HHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45555 47899999988 443 2334455544444433333 678888888876 34778888877778
Q ss_pred HhCCC--hhhHHHHHHHhhhcCCCCC-CcchHHHHHHHHhccCC-hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc--
Q 037178 175 TKNEL--YTDVLSIFVELSSDTELKP-DNFTFPCVIKACGGIAD-VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-- 248 (311)
Q Consensus 175 ~~~g~--~~~a~~~~~~m~~~~~~~p-~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 248 (311)
.+.|+ +++++.+++++.+ ..| |-..|+.---.+...|. ++++.+.+..+.+.. +-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 78774 8999999999977 334 45566666666677777 589999999999887 55788888877776665
Q ss_pred ------------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhC-----------CCcchHHHHHHhhhhccCCCCCC
Q 037178 249 ------------AFVEEMVKLFEVMPE--R-NLVSWNSIICGFSEN-----------GFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 249 ------------g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~-----------g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
+.++++++.+++... | |..+|+=+-..+.+. +.++++++.++++ .+ +.||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el--le--~~pd 270 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL--QE--LEPE 270 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH--HH--HCTT
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH--Hh--hCcc
Confidence 457888888888774 4 667777554444444 4577888888888 43 3565
Q ss_pred c
Q 037178 303 V 303 (311)
Q Consensus 303 ~ 303 (311)
.
T Consensus 271 ~ 271 (331)
T 3dss_A 271 N 271 (331)
T ss_dssp C
T ss_pred c
Confidence 3
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.78 E-value=0.017 Score=49.31 Aligned_cols=64 Identities=5% Similarity=-0.186 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 163 NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 163 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
+...|.++...+...|++++|...+++... .+ |+...|..+-..+.-.|+.++|.+.+.+....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGID-LE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444555554444444566666666655555 22 45444544555555556666666555555544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0088 Score=52.65 Aligned_cols=94 Identities=10% Similarity=0.014 Sum_probs=73.8
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhc--CCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCCcHH
Q 037178 170 LVSGFTKNELYTDVLSIFVELSSD--TELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKM-----G--LIGDVF 236 (311)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~--~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~ 236 (311)
.+..+.+.|++++|..++++..+. .-+.|+. .+++.+..+|...|++++|..++++..+- | .+-...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355677889999999999988641 2233432 47899999999999999999999887643 2 222468
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 899999999999999999999987653
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.0078 Score=52.98 Aligned_cols=87 Identities=10% Similarity=-0.069 Sum_probs=68.6
Q ss_pred hCCChhhHHHHHHHhhhc--CCCCCCc----chHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCCcHHHHHHHH
Q 037178 176 KNELYTDVLSIFVELSSD--TELKPDN----FTFPCVIKACGGIADVGFGSGVHGMAAKM-----G--LIGDVFVSNALI 242 (311)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~--~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~~~~~li 242 (311)
..|++++|..++++..+. .-+.|+. .+++.|..+|...|++++|..++++..+- | .+-...+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999886431 2233432 57999999999999999999999887653 2 222468899999
Q ss_pred HHHHhcCCHHHHHHHHhhCC
Q 037178 243 AMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~ 262 (311)
..|...|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998754
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.51 E-value=0.0034 Score=46.83 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=17.0
Q ss_pred CChhhHHHHHHHhhhcCCCCCCcchHHHHHH
Q 037178 178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIK 208 (311)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~ 208 (311)
|++++|.+.|++..+ +.|+...|...+.
T Consensus 105 g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 105 HNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 467777777777655 5566555544444
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.49 E-value=0.0042 Score=46.29 Aligned_cols=110 Identities=5% Similarity=-0.170 Sum_probs=80.7
Q ss_pred HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCCh----------hHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 037178 74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDI----------EIGKRVHELVSASTQFSNDFIINTRLITM 142 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~g~~~~~~~~~~ll~~ 142 (311)
.+.+ .+++|...+++..+ .+.+...|..+..++...+++ ++|...|++.. +.. +-+...|..+-.+
T Consensus 13 ~r~~-~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRIL-LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-HhC-cCcHHHHHHHHHH
Confidence 3556 88999999999998 666788888888888877764 59999999988 655 3356678889999
Q ss_pred HHhcC-----------ChhHHHHHHHhcC--CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 143 YSLCG-----------FPLDSRRVFDSLK--TRNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 143 ~~~~g-----------~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
|...| ++++|.+.|++.. +|+...|...+.. .++|-+++-+...
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~ 146 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCcccc
Confidence 98774 8999999999876 5665555444443 2445555444443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.25 E-value=0.005 Score=41.42 Aligned_cols=52 Identities=6% Similarity=-0.167 Sum_probs=23.5
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 210 CGGIADVGFGSGVHGMAAKMGLIGDVF-VSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 210 ~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+.+.|++++|.+.++...+.. +.+.. .+..+..+|.+.|++++|.+.|++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444432 22333 44444444444455555544444443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.24 E-value=0.059 Score=51.06 Aligned_cols=97 Identities=6% Similarity=-0.066 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC 146 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~ 146 (311)
..++..+.+.| .+++|+++.+. .. .-+......|+++.|.++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~-~~~~a~~~~~~-------~~---~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQE-YYEEALNISPD-------QD---QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCC-------HH---HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-ChHHheecCCC-------cc---hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHc
Confidence 67777777888 88888876632 11 1123345679999988885543 3567899999999999
Q ss_pred CChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH
Q 037178 147 GFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 147 g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~ 186 (311)
|+++.|++.|.++.+ |..+...+...|+.+...++
T Consensus 695 ~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp TCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHH
Confidence 999999999988764 33333444444544444333
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.03 E-value=0.019 Score=38.46 Aligned_cols=54 Identities=20% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCChh-hHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLKE-ATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
...+.+.| ++++|+..|++..+ .+.+.. .+..+..++...|++++|...|+...
T Consensus 7 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455666 77777777776666 434445 66666666666677777777776666
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.90 E-value=0.28 Score=41.84 Aligned_cols=71 Identities=4% Similarity=-0.120 Sum_probs=54.8
Q ss_pred CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhH
Q 037178 197 KPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSW 269 (311)
Q Consensus 197 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~y 269 (311)
..+..+|..+.-.+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|++... |...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 4466777777777777789999999988888886 6777777778888888999999888887763 555544
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.25 E-value=0.29 Score=35.18 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-C--CCChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCC
Q 037178 237 VSNALIAMYGKCAFVEEMVKLFEVM-P--ERNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGF 299 (311)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m-~--~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~ 299 (311)
.....++.+...|+-+.-.++..++ . +++....-.+..+|.+-|+..+|.+++.+. .+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A--C~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA--CKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH--HHhhh
Confidence 3344445555555555555555553 2 234444455555555555555555555555 45554
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.79 E-value=0.28 Score=32.69 Aligned_cols=47 Identities=6% Similarity=-0.138 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 216 VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
.++|..++++..+.. +-+......+...+.+.|++++|...|+++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666665554 33455555555666666666666666666553
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.58 E-value=0.42 Score=31.78 Aligned_cols=62 Identities=6% Similarity=-0.067 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHHhcCC---hhHHHHHHHhcC---CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 131 NDFIINTRLITMYSLCGF---PLDSRRVFDSLK---TRNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~---~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
.|...+..+..++...++ .++|..+|++.. ..++.+...+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555543333 566777766654 23556666667777777777777777777765
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.05 E-value=0.3 Score=33.15 Aligned_cols=64 Identities=16% Similarity=-0.125 Sum_probs=46.9
Q ss_pred cchHHHHHHHHhccCChhhHHHHHHHHHHhC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 200 NFTFPCVIKACGGIADVGFGSGVHGMAAKMG------LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 200 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..-+..|-..+.+.|+++.|...++...+.- -.....++..|..+|.+.|++++|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445566667777777777777777765531 134567888899999999999999999988763
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.99 E-value=1.1 Score=33.75 Aligned_cols=128 Identities=10% Similarity=-0.012 Sum_probs=73.2
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH
Q 037178 107 CGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI 186 (311)
Q Consensus 107 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~ 186 (311)
....|+++.|.++.+.+. +...|..|-....+.|+++-|++.|.+... +..+.--|.-.|+.++...+
T Consensus 15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777766542 456777788888888888888888777664 33333334445555555444
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 187 FVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 187 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
-+.-.. .| -++.....+...|+++++.+++.+ .|--|.. . -.-...|--+.|.++.+++.
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA-----~-~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLA-----Y-AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHH-----H-HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHH-----H-HHHHHcCcHHHHHHHHHHhC
Confidence 333332 22 255666666677777777777643 2321111 0 11112455667777766654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.81 E-value=0.45 Score=32.23 Aligned_cols=63 Identities=6% Similarity=-0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcC-----CCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDT-----ELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
+-.|...+.+.|++..|...|++..+.. .-.+....+..+..++.+.|++++|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4455555566666666666665543311 00122345566666666667777777666666654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.81 E-value=0.34 Score=35.65 Aligned_cols=80 Identities=10% Similarity=-0.162 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA---DVGFGSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~ 255 (311)
..+.+-|.+... .+. ++..+...+.-++++.+ +++++..+++.+.+.. .| ....+-.|--+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555544 333 56666666667777776 6668888888887775 34 3455555666778888888888
Q ss_pred HHHhhCCC
Q 037178 256 KLFEVMPE 263 (311)
Q Consensus 256 ~~~~~m~~ 263 (311)
+.++...+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887763
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.66 E-value=3.4 Score=36.25 Aligned_cols=185 Identities=11% Similarity=-0.050 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHhhcc-------CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH--HHHHHHHHHhcC
Q 037178 77 SKSLNKALSLLQENLH-------NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII--NTRLITMYSLCG 147 (311)
Q Consensus 77 g~~~~~a~~~~~~m~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~ll~~~~~~g 147 (311)
| +++.|++.+..+.+ ..........++..|...|+++...+.+..+..++|..+...+ .+.++.......
T Consensus 30 ~-~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 N-DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp H-HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 5 77888877665554 2233445777888899999998887777777645554433322 122333333333
Q ss_pred Chh--HHHHHHHhcCC---C-------ChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-CCCCCC---cchHHHHHHHHh
Q 037178 148 FPL--DSRRVFDSLKT---R-------NLFQWNALVSGFTKNELYTDVLSIFVELSSD-TELKPD---NFTFPCVIKACG 211 (311)
Q Consensus 148 ~~~--~A~~l~~~m~~---~-------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~---~~t~~~li~~~~ 211 (311)
..+ .-..+.+.... . -......|...|-..|++.+|.+++.++... .|.... ...|...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333 23344444431 1 1123467888899999999999999998641 232222 246777888899
Q ss_pred ccCChhhHHHHHHHHHH----hCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 212 GIADVGFGSGVHGMAAK----MGLIGD--VFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
..+++.+|..++..... ....|+ ...|...+..+...+++.+|.+.|.+.-
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999988643 222332 3566777888888999999998888765
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.97 E-value=1.8 Score=31.11 Aligned_cols=63 Identities=13% Similarity=-0.025 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGL 231 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 231 (311)
.+..++.....|+-+.-.+++.++. .+..|+....-.+..||.+.|+..++.+++.+..+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3445555566666666666666642 12345555555666666666666666666666666664
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.89 E-value=0.085 Score=46.62 Aligned_cols=210 Identities=12% Similarity=0.086 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 037178 64 LHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMY 143 (311)
Q Consensus 64 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~ 143 (311)
..|..|-.+..+.+ ++.+|++-|-+. .|+..|..++.++.+.|.++.-...+...+ +.. .+..+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~-~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSS-SCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccC-chHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHh--cccccHHHHHHHH
Confidence 34667777777777 666665544322 345667777777777777777766666555 332 2333345577777
Q ss_pred HhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhc-------------------CCCCCCcchHH
Q 037178 144 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSD-------------------TELKPDNFTFP 204 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~p~~~t~~ 204 (311)
+|.|++.+-++++. .||+.-...+.+-|...|.++.|.-+|..+..- ..-.-+..||.
T Consensus 127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 77776655433222 244444444555555555555555544433220 00112455666
Q ss_pred HHHHHHhccCChhhH------------------------------HHHHHHHHHhCC-CCcHHHHHHHHHHHHhcCCHHH
Q 037178 205 CVIKACGGIADVGFG------------------------------SGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEE 253 (311)
Q Consensus 205 ~li~~~~~~g~~~~a------------------------------~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~ 253 (311)
-+-.+|...+++..| ..+++.-. |. ....-+++-|.-.|+|- +.++
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHH
Confidence 666666655554444 44433322 21 34566777777777765 3444
Q ss_pred HHHHHhhCCC----C-------ChhhHHHHHHHHHhCCCcchHHH
Q 037178 254 MVKLFEVMPE----R-------NLVSWNSIICGFSENGFSCESFD 287 (311)
Q Consensus 254 A~~~~~~m~~----~-------~~~~y~~li~~~~~~g~~~~a~~ 287 (311)
.++.++-.-. | ....|.-++--|+.-.++|.|..
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4444433221 2 44678888888888888887654
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.84 E-value=0.32 Score=39.97 Aligned_cols=114 Identities=6% Similarity=-0.080 Sum_probs=70.2
Q ss_pred CChhHHHHHHHhcCCCCh--HHHHHHHHH-HHhC--CC------hhhHHHHHHHhhhcCCCCCC---cchHHHHHHHHhc
Q 037178 147 GFPLDSRRVFDSLKTRNL--FQWNALVSG-FTKN--EL------YTDVLSIFVELSSDTELKPD---NFTFPCVIKACGG 212 (311)
Q Consensus 147 g~~~~A~~l~~~m~~~~~--~~y~~li~~-~~~~--g~------~~~a~~~~~~m~~~~~~~p~---~~t~~~li~~~~~ 212 (311)
|+..+-.+.+.+..+.++ ..|..++.+ +... |. ...|..++++..+ +.|+ ...|..+...|.+
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHh
Confidence 333444555555554433 345555543 2322 32 3355555666555 5565 4567777777777
Q ss_pred -----cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHhhCCC
Q 037178 213 -----IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-AFVEEMVKLFEVMPE 263 (311)
Q Consensus 213 -----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 263 (311)
-|+.++|.+.|++..+.+-.-+..++..+.+.+++. |+.+++.+.+++...
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 378888888888887765322467777777777774 888888888887764
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.78 E-value=0.44 Score=35.03 Aligned_cols=77 Identities=8% Similarity=-0.142 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC---ChhHHHHHHHhcCCCC-----hHHHHHHHHHHHhCCChhhHHH
Q 037178 114 EIGKRVHELVSASTQFSNDFIINTRLITMYSLCG---FPLDSRRVFDSLKTRN-----LFQWNALVSGFTKNELYTDVLS 185 (311)
Q Consensus 114 ~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~l~~~m~~~~-----~~~y~~li~~~~~~g~~~~a~~ 185 (311)
..+++-|.... +.|. ++..+.-.+--++++.+ +.+++..+|++..+.+ ...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444443 3332 33333333555555554 3445555555443211 2223334444455556666666
Q ss_pred HHHHhhh
Q 037178 186 IFVELSS 192 (311)
Q Consensus 186 ~~~~m~~ 192 (311)
.++...+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.77 E-value=0.0052 Score=54.09 Aligned_cols=144 Identities=5% Similarity=-0.033 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhc
Q 037178 133 FIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGG 212 (311)
Q Consensus 133 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~ 212 (311)
..+|..|..+..+.|++.+|.+.|=+ ..|...|..+|.+..+.|++++-+..+...++ .. -+...=+.|+-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TC--CSTTTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hh--cccccHHHHHHHHHh
Confidence 34667788888888888877766533 34555688888888888888888888766655 33 344455678888888
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CChhh
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE------------------------RNLVS 268 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------~~~~~ 268 (311)
.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888887776653 45666667777888888888888888776652 46789
Q ss_pred HHHHHHHHHhCCCcchHHHH
Q 037178 269 WNSIICGFSENGFSCESFDL 288 (311)
Q Consensus 269 y~~li~~~~~~g~~~~a~~l 288 (311)
|-.+-.+|...+++.-|.-.
T Consensus 202 WKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHh
Confidence 99999999999887766544
No 233
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.42 E-value=2.8 Score=31.84 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACG 211 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~ 211 (311)
+..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|..+....+ .++.. .++...-...+.++.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~----d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPL-IKALK----DEDWFVRIAAAFALG 132 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT----CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHH-HHHHc----CCCHHHHHHHHHHHH
Confidence 4444444455555555544444444445555555555555555555554333222 22222 234444455555555
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
+.|+.+ +...+..+.+ .++..+-...+.++.+.|.
T Consensus 133 ~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 133 EIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 555432 2222222222 2344555555555555554
No 234
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.40 E-value=1.9 Score=42.89 Aligned_cols=145 Identities=8% Similarity=-0.036 Sum_probs=99.7
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-----------------
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN----------------- 200 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----------------- 200 (311)
.++..+.+.|..+.|.++.....+ +...--.+..+|...|++++|.+.|++.- .|+..+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhccccccccccc
Confidence 456667777888877776655544 44444556778888999999999998763 2222110
Q ss_pred ------chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--Chhh
Q 037178 201 ------FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD----VFVSNALIAMYGKCAFVEEMVKLFEVMPER--NLVS 268 (311)
Q Consensus 201 ------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~ 268 (311)
.-|..++.-+.+.|.++.+.++-....+..-+-+ ...|..+.+.+...|++++|...+-.+... -...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 1267788888888888888888777665532222 236888899999999999998888776532 2345
Q ss_pred HHHHHHHHHhCCCcchH
Q 037178 269 WNSIICGFSENGFSCES 285 (311)
Q Consensus 269 y~~li~~~~~~g~~~~a 285 (311)
...||...|..|+.+.-
T Consensus 974 Lr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhCCChhhh
Confidence 66777777777765543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.80 E-value=2.2 Score=31.20 Aligned_cols=62 Identities=11% Similarity=-0.047 Sum_probs=38.8
Q ss_pred CChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHH
Q 037178 178 ELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALI 242 (311)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 242 (311)
++.++|.++|+.+.. .+-+. ...|....+--.+.|+++.|.+++......+.+|. ......|
T Consensus 74 ~D~d~aR~vy~~a~~-~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARA-NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHH-HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 577777777777765 32222 34444444445678888888888888888775543 3333333
No 236
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.77 E-value=1.9 Score=28.91 Aligned_cols=77 Identities=14% Similarity=-0.041 Sum_probs=57.7
Q ss_pred CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
...++|..+-+.+. ..+. ...+--+-+..+...|++++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~-~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLE-RLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 35678888888877 5553 444444456667788999999999999999999998888664 778888888777777
Q ss_pred hh
Q 037178 191 SS 192 (311)
Q Consensus 191 ~~ 192 (311)
..
T Consensus 95 a~ 96 (115)
T 2uwj_G 95 GG 96 (115)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 237
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.72 E-value=2.1 Score=28.82 Aligned_cols=77 Identities=14% Similarity=0.014 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHh
Q 037178 111 KDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVEL 190 (311)
Q Consensus 111 ~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m 190 (311)
...++|..+-+.+. ..+. ...+--+-+..+...|++++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.++
T Consensus 21 H~HqEA~tIAdwL~-~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLH-LKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 35678888888877 5553 444444455667788999999999999999999998888765 667777777777677
Q ss_pred hh
Q 037178 191 SS 192 (311)
Q Consensus 191 ~~ 192 (311)
..
T Consensus 96 a~ 97 (116)
T 2p58_C 96 AR 97 (116)
T ss_dssp TT
T ss_pred Hh
Confidence 65
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.54 E-value=1.2 Score=36.67 Aligned_cols=92 Identities=9% Similarity=-0.118 Sum_probs=70.3
Q ss_pred hhHHHHHHHhcC--CC---ChHHHHHHHHHHHh-----CCChhhHHHHHHHhhhcCCCCCC--cchHHHHHHHHhcc-CC
Q 037178 149 PLDSRRVFDSLK--TR---NLFQWNALVSGFTK-----NELYTDVLSIFVELSSDTELKPD--NFTFPCVIKACGGI-AD 215 (311)
Q Consensus 149 ~~~A~~l~~~m~--~~---~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~p~--~~t~~~li~~~~~~-g~ 215 (311)
...|...+++.. .| +...|+.+...|.+ -|+.++|.+.|++..+ +.|+ ..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCC
Confidence 345666666554 34 35689999999999 4999999999999987 6674 66777888888885 99
Q ss_pred hhhHHHHHHHHHHhCCC--CcHHHHHHHHH
Q 037178 216 VGFGSGVHGMAAKMGLI--GDVFVSNALIA 243 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~--~~~~~~~~li~ 243 (311)
.+++.+.+++..+.... |+....|.+-+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 99999999999987765 66665555443
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.45 E-value=2.2 Score=28.66 Aligned_cols=75 Identities=8% Similarity=-0.049 Sum_probs=57.3
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...++|..+-+.+...|- ...+--+-+..++..|++++|..+.+...-||...|-+|-.+ +.|-.+++...+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 367888888888877764 444444555678899999999999999999999999777543 567677777777676
No 240
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.36 E-value=3.9 Score=31.30 Aligned_cols=142 Identities=14% Similarity=0.026 Sum_probs=73.3
Q ss_pred CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHH
Q 037178 95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGF 174 (311)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~ 174 (311)
+|...-...+..+++.|..+....+.+.+. .+|..+-...+.++.+.|..+....+.+.+..+|...-...+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 105 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 444444445555555554333333333222 245555555666666666655555555555566666666666666
Q ss_pred HhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 175 TKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
.+.|..+.. ..+.++.. .++...-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.|.
T Consensus 106 ~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 106 GQIGDERAV-EPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHhCcHHHH-HHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666654333 33333332 255555556666666666543 3333333332 3455556666666666665
No 241
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.11 E-value=2.2 Score=28.66 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 214 ADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 214 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...++|..+-+.+...+- ...+--+-+..++..|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 367888888888877764 44444455567889999999999999999999999977644 4677777787777677
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.46 E-value=4.8 Score=30.77 Aligned_cols=173 Identities=10% Similarity=0.009 Sum_probs=109.0
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.++...-...+.++.+.| ..+..-.+.+.+. .+|...-...+.+++..++.+....+.+.+. .++..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-----~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG-DERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIKALK-----DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTT--CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 344444455666777777 5333333333333 3566666777777777776544444444333 4667777778
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
+.++.+.|..+....+.+.+..++...-...+.++.+.|..+ +...+.++.. .++..+-...+.++.+.+. .++
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhH
Confidence 889999998766666777777788877778888888887754 4444555543 3667777788888888876 455
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKCA 249 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 249 (311)
...+..+.+.+ +..+-...+.++.+.+
T Consensus 176 ~~~L~~~l~d~---~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 176 RAAMEKLAETG---TGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHhcC
Confidence 55666665543 4555555555555443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.02 E-value=0.96 Score=38.98 Aligned_cols=67 Identities=6% Similarity=-0.103 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHh----hcCCCchhhHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSA----STQFSNDFIIN 136 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~~ 136 (311)
++.++...| ++++|+..+..... .+-+...|..+|.++.+.|+..+|.+.|+.... +.|+.|+..+-
T Consensus 177 ~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455566 66666666666655 555556666666666666666666666665431 34666665543
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.90 E-value=0.92 Score=42.64 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 245 YGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+...|+++-|+++-++..+ | +..+|-.|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445566666666555543 3 3455666666666666666666555544
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.83 E-value=3.4 Score=30.25 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=67.8
Q ss_pred CChHHHHHHHHHHHhCCCh------hhHHHHHHHhhhcCCCCCCcc-hHHHHHH------HHhccCChhhHHHHHHHHHH
Q 037178 162 RNLFQWNALVSGFTKNELY------TDVLSIFVELSSDTELKPDNF-TFPCVIK------ACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 162 ~~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~p~~~-t~~~li~------~~~~~g~~~~a~~~~~~m~~ 228 (311)
.|-.+|-..+.-.-+.|+. ++..++|++... .++|+.. .+..-|. .+...+++++|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556666666666666777 777788887653 4555431 1111111 11344899999999999987
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 229 MGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 229 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+-.. ..+|-...+--.+.|++..|.+++....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 74444 8888888888899999999999998654
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.77 E-value=2.6 Score=28.42 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=34.9
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
-+..+-++.+.. ..+.|+.....+.++||.+.+++..|.++++-++.+- .....+|..+++
T Consensus 27 ~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344444555555 5566666666666666666666666666666555442 233445555554
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.53 E-value=2.1 Score=28.88 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=52.8
Q ss_pred HHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 037178 209 ACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIIC 274 (311)
Q Consensus 209 ~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~ 274 (311)
.+.+.. |..+..+-++.+....+.|+..+..+.+.+|.|.+++.-|.++|+..+. ....+|.-++.
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444 6667888888888889999999999999999999999999999998773 33445766653
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.52 E-value=5.5 Score=29.56 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCCh-------hhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 62 QGLHFLQEITTLCEESKSLNKALSLLQENLH---NADLK-------EATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
+...+-.-++.+...| .++.|.-+.+.+.. ..++. .++..+..++...|.+.+|...|++..
T Consensus 19 ~~~~l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --CCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445556677788888 88888888777665 33442 245666677778888888888888865
No 249
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.72 E-value=7.4 Score=29.36 Aligned_cols=172 Identities=10% Similarity=0.008 Sum_probs=107.9
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 60 STQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
.+|...-...+.++.+.+ ..+....+.+.+. .++...-...+.+++..++.+....+.+.+. .++..+-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-----d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIG-DERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIKALK-----DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 444444555666666666 5433333443333 3566666667777777776554444444333 4677777778
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhH
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFG 219 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a 219 (311)
+.++.+.|..+....+.+.+..++...-...+.++.+.|..+ +...+.++.. .++...-...+.++.+.|.. ++
T Consensus 97 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~-~~ 170 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGGE-RV 170 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCSH-HH
T ss_pred HHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCch-hH
Confidence 888999888776677777777788777777788888877654 4445555543 25677777888888888764 45
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 220 SGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
...+..+.+.+ +..+-...+.++.+.
T Consensus 171 ~~~L~~~l~d~---~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 171 RAAMEKLAETG---TGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 55555555543 445555555555443
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.32 E-value=12 Score=31.33 Aligned_cols=147 Identities=8% Similarity=-0.070 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHH----HHhhhcCCCCCCcchHHHHHHH
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIF----VELSSDTELKPDNFTFPCVIKA 209 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~p~~~t~~~li~~ 209 (311)
..|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++- +-..+ .++++|.....-++..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Confidence 35667778889999999999986442 23345556666655553 33344 6777777777777776
Q ss_pred HhccCChhhH-HHHHH----HHHHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH-------------
Q 037178 210 CGGIADVGFG-SGVHG----MAAKMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW------------- 269 (311)
Q Consensus 210 ~~~~g~~~~a-~~~~~----~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y------------- 269 (311)
+.....-+-. .++.+ +-.+.| -.-|......+...|.+.|++.+|+..|---.++.+..|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 6555432211 22222 223333 234778888899999999999999988843222221222
Q ss_pred -------HHHHHHHHhCCCcchHHHHHHhh
Q 037178 270 -------NSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 270 -------~~li~~~~~~g~~~~a~~l~~~m 292 (311)
...+--|+-.++...|..+++..
T Consensus 184 ~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 184 HTAPLYCARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22334455567777787877666
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.73 E-value=2.1 Score=36.78 Aligned_cols=55 Identities=7% Similarity=-0.167 Sum_probs=27.8
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 206 VIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555555555555544443 344555555555555555555555555543
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.66 E-value=13 Score=30.89 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHhhcC-CCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHH----H
Q 037178 113 IEIGKRVHELVSASTQ-FSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSI----F 187 (311)
Q Consensus 113 ~~~a~~~~~~m~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~----~ 187 (311)
+++...-++.-. +.| +---...|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .
T Consensus 13 ~~r~l~rl~~~I-~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 13 LAKTLQRFENKI-KAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 444444444444 333 2122346777888889999999999886542 2334556776666654 3
Q ss_pred HHhhhcCCCCCCcchHHHHHHHHhccCChh-hHHHHHHHH----HHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 037178 188 VELSSDTELKPDNFTFPCVIKACGGIADVG-FGSGVHGMA----AKMG--LIGDVFVSNALIAMYGKCAFVEEMVKLFEV 260 (311)
Q Consensus 188 ~~m~~~~~~~p~~~t~~~li~~~~~~g~~~-~a~~~~~~m----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (311)
+-..+ .+++++......++..+.....-+ .=.++++++ .+.| -..|......+...|.+.|++.+|+..|--
T Consensus 81 ev~~~-~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 81 EVYDL-AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHH-TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 33444 677777777777776665533211 112333333 3333 224778899999999999999999997752
Q ss_pred CCCCCh----------------------hh-HHHHHHHHHhCCCcchHHHHHHhh
Q 037178 261 MPERNL----------------------VS-WNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 261 m~~~~~----------------------~~-y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
-...|. .. ....+--|+-.|+...|.++++..
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 221011 11 122344566677888888888876
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.76 E-value=5.3 Score=28.52 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
-+..+-++.+.. ..+.|+.......+++|.+.+|+..|.++++-++.+- .+...+|..+++
T Consensus 70 wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344455555555 6677777777788888888888888887777665542 444556766665
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.64 E-value=30 Score=34.34 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-c--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPD-N--FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
|..++..|-+.|.++.+.++-+...+..+-..+ . ..|..+.+++...|++++|...+-.+-....+ ......||.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 567777888888888888776554331222221 1 24778888888999999998888777655433 455666777
Q ss_pred HHHhcCCHHHH
Q 037178 244 MYGKCAFVEEM 254 (311)
Q Consensus 244 ~~~~~g~~~~A 254 (311)
..|..|.++.-
T Consensus 980 ~lce~~~~~~L 990 (1139)
T 4fhn_B 980 QLTKQGKINQL 990 (1139)
T ss_dssp HHHHHCCHHHH
T ss_pred HHHhCCChhhh
Confidence 77766665443
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.17 E-value=10 Score=32.57 Aligned_cols=161 Identities=8% Similarity=-0.055 Sum_probs=102.3
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCCC---hhhHHHHHHhcccCC-ChhHHHHHHHHHHh---hc-CCCchh
Q 037178 65 HFLQEITTLCEESKSLNKALSLLQENLH---NADL---KEATGVLLQACGHEK-DIEIGKRVHELVSA---ST-QFSNDF 133 (311)
Q Consensus 65 ~~~~li~~~~~~g~~~~~a~~~~~~m~~---~~~~---~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~---~~-g~~~~~ 133 (311)
+...|...|.+.| +.++..+++...+. .-+- ......++..+.... ..+.-.++..+..+ .. ..-...
T Consensus 21 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEG-KAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999 99999999998887 2222 233567777776643 33444444444331 11 111122
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcCC----CC-----hHHHHHHHHHHHhCCChhhHHHHHHHhhhcC-CCCCCcchH
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLKT----RN-----LFQWNALVSGFTKNELYTDVLSIFVELSSDT-ELKPDNFTF 203 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~t~ 203 (311)
.+-..|...|...|++.+|.+++.++.+ -| +..|-.-+..|...|++.++...+....... .+.++....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2334689999999999999888887752 11 2457777888999999999999998875411 222333322
Q ss_pred HHHHHH-----Hh-ccCChhhHHHHHHHHH
Q 037178 204 PCVIKA-----CG-GIADVGFGSGVHGMAA 227 (311)
Q Consensus 204 ~~li~~-----~~-~~g~~~~a~~~~~~m~ 227 (311)
..++. +. ..+++.+|...|-+..
T Consensus 180 -a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 -GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp -HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred -HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22222 24 6788888887776653
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.70 E-value=20 Score=31.38 Aligned_cols=179 Identities=6% Similarity=-0.036 Sum_probs=113.5
Q ss_pred CChhHHHHHHHHHHhh----cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHH----HHHHHhCCC
Q 037178 111 KDIEIGKRVHELVSAS----TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNAL----VSGFTKNEL 179 (311)
Q Consensus 111 ~~~~~a~~~~~~m~~~----~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~l----i~~~~~~g~ 179 (311)
|+++.|.+.+-.+..+ .+..........++..|.+.|+++...+.+..+.+. --..-..+ +........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777766655521 234455677888999999999999987766655432 11122233 333222333
Q ss_pred hhh--HHHHHHHhhhcCCCCCCc--------chHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCc---HHHHHHHHHH
Q 037178 180 YTD--VLSIFVELSSDTELKPDN--------FTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGD---VFVSNALIAM 244 (311)
Q Consensus 180 ~~~--a~~~~~~m~~~~~~~p~~--------~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~ 244 (311)
.+. -..+.+... .+.-+. .....|...+...|++.+|.+++..+... |.... ...+...+..
T Consensus 110 ~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 110 LDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp THHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 222222221 121111 12356778889999999999999998644 22111 4677888899
Q ss_pred HHhcCCHHHHHHHHhhCCC------CC----hhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 245 YGKCAFVEEMVKLFEVMPE------RN----LVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~------~~----~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
|...+++..|..++++... ++ ...|..++..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999888641 11 235677777788888888888877776
No 257
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.69 E-value=2.7 Score=29.66 Aligned_cols=64 Identities=9% Similarity=-0.255 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHhccCChhh---HHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 198 PDNFTFPCVIKACGGIADVGF---GSGVHGMAAKMGLIG--DVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 198 p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
++..+-..+.-++.+.....+ +..++..+.+.+ .| .....-.|.-++.|.|++++|.+.++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333443344444444443333 445555544443 12 22222233344555555555555555544
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.45 E-value=11 Score=28.06 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=63.6
Q ss_pred cCCCchhhHH--HHHHHHHHhcCChhHHHHHHHhcC-----CCCh-------HHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 127 TQFSNDFIIN--TRLITMYSLCGFPLDSRRVFDSLK-----TRNL-------FQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 127 ~g~~~~~~~~--~~ll~~~~~~g~~~~A~~l~~~m~-----~~~~-------~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
.|+.|....| -.-+..+...|.++.|+-+.+.+. ++++ .++..+.+++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4555544333 334566677788888877766643 2332 2456677788888888888888888533
Q ss_pred cCCCCCCcc-hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 193 DTELKPDNF-TFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 193 ~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
....-+... ++..+ . ....... ......+..+---+-.+|.+.|+.++|..+++.+..
T Consensus 92 ~~k~l~k~~s~~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCccccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 122222111 11111 0 0000000 011233445555577888899999999999988763
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.14 E-value=28 Score=32.74 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHhcCC--CChHH-H-HHHHHHHHhCCC-hhhHHHHHHHhhhc-----CCCCCCcc----
Q 037178 137 TRLITMYSLCGF-PLDSRRVFDSLKT--RNLFQ-W-NALVSGFTKNEL-YTDVLSIFVELSSD-----TELKPDNF---- 201 (311)
Q Consensus 137 ~~ll~~~~~~g~-~~~A~~l~~~m~~--~~~~~-y-~~li~~~~~~g~-~~~a~~~~~~m~~~-----~~~~p~~~---- 201 (311)
..|+..+...|+ .+.|..+|+++.+ |.... | ..+|..+.+.++ --+|.+++.+..+. ....+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555566 4779999988764 32222 2 233333333332 23455555443210 11222211
Q ss_pred --hH-HHH----HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 202 --TF-PCV----IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 202 --t~-~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+ ..| .+-|...|+++.|.++-++....- +.+-.+|-.|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 01 112 234567899999999999887764 5568999999999999999999999999886
No 260
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=84.07 E-value=9.3 Score=29.50 Aligned_cols=19 Identities=5% Similarity=-0.192 Sum_probs=10.1
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 037178 243 AMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m 261 (311)
..-++.|+.+-+..+++.-
T Consensus 155 ~~A~~~~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 155 IHAVENNSLSMVQLLLQHG 173 (241)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcC
Confidence 3334556666555555543
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.04 E-value=5 Score=28.68 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=51.8
Q ss_pred HhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 037178 210 CGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIIC 274 (311)
Q Consensus 210 ~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~ 274 (311)
+.+.. |..+..+-++.+....+.|+..+..+.+.++-+.+++.-|.++|+..+. ....+|.-++.
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34444 5667788888888889999999999999999999999999999998773 34445766653
No 262
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=81.62 E-value=11 Score=26.51 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCCCC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNEL--YTDVLSIFVELSSDTELKP 198 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p 198 (311)
..+.++.-|...|+.++|.+.++++..| ..+.+..+..++-+.+. .+.+..++..+.. .|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~-~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcC
Confidence 3456888888889999999999998866 33456666667666542 4667788888876 55433
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.10 E-value=13 Score=32.41 Aligned_cols=95 Identities=8% Similarity=-0.147 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHH--
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKT------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCV-- 206 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~l-- 206 (311)
+...+...|.+.|++++|.+.|.++.. .-+..|-.+|..+...+++..+...+.+......-.++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566788999999999999999998863 234567788888889999999999988875411112222211111
Q ss_pred --HHHHhccCChhhHHHHHHHHHHh
Q 037178 207 --IKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 207 --i~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
.-.+...+++.+|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11234567888888888776554
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.31 E-value=27 Score=29.94 Aligned_cols=161 Identities=11% Similarity=-0.015 Sum_probs=77.9
Q ss_pred hHHHHHHhcccCCChhHHHHHHHHHHhhcCCCch---hhHHHHHHHHHHhcCC-hhHHHHHHHhcCC---CChHHH----
Q 037178 99 ATGVLLQACGHEKDIEIGKRVHELVSASTQFSND---FIINTRLITMYSLCGF-PLDSRRVFDSLKT---RNLFQW---- 167 (311)
Q Consensus 99 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~---~~~~~y---- 167 (311)
....+...|...|+.++..+++.....-.+.-+. ......|++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677777666666655411121221 2234456666655432 2222233222211 111222
Q ss_pred --HHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-----chHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCcHHHH
Q 037178 168 --NALVSGFTKNELYTDVLSIFVELSSDTELKPDN-----FTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGDVFVS 238 (311)
Q Consensus 168 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~ 238 (311)
.-++..|...|++.+|..++.++.+ .--..|. ..|..-++.|...|++.++...+...... .+.++..+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~-~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLR-ELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-HHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2466677777777777777766654 2112221 23445555566667777777776655432 222222222
Q ss_pred HHH----HHHHH-hcCCHHHHHHHHhh
Q 037178 239 NAL----IAMYG-KCAFVEEMVKLFEV 260 (311)
Q Consensus 239 ~~l----i~~~~-~~g~~~~A~~~~~~ 260 (311)
..+ .-.++ ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 111 11234 56666666666643
No 265
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.60 E-value=16 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=8.2
Q ss_pred HHHhCCChhhHHHHHHHhh
Q 037178 173 GFTKNELYTDVLSIFVELS 191 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~ 191 (311)
++.+.|++++|.+.++.+.
T Consensus 83 g~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444443
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.22 E-value=19 Score=28.34 Aligned_cols=113 Identities=7% Similarity=0.026 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHH
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITM 142 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~ 142 (311)
+..+...++.| +.+.+..+++.-.. ...+..-+ +.+...+..|+.+.+ +.+. +.|..++.. ...+.+..
T Consensus 6 ~~~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll-~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 6 NHLLIKAVQNE-DVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIV----ELLL-RHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHH----HHHH-HTTCCTTCCCTTCCCHHHH
T ss_pred chHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHH----HHHH-HcCCCCcccCCCCCCHHHH
Confidence 45666777888 88877777776444 22122222 344455566776544 4444 445444321 11234555
Q ss_pred HHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHH
Q 037178 143 YSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIF 187 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~ 187 (311)
.+..|+.+-+..+++.-... |...++.+.. .+..|+.+-+..++
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFME-AAVYGKVKALKFLY 125 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHH-HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCHHHH-HHHhCCHHHHHHHH
Confidence 66778888777777764332 3333334333 35566655444443
No 267
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=75.97 E-value=11 Score=28.93 Aligned_cols=204 Identities=9% Similarity=-0.087 Sum_probs=99.0
Q ss_pred HHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh---hHHHHHHHHHHhcC
Q 037178 72 TLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF---IINTRLITMYSLCG 147 (311)
Q Consensus 72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~ll~~~~~~g 147 (311)
..++.| +.+....+++.-.. ..++..-. +.+...+..|+.+.+..+++ .|..++. ....+.+...+..|
T Consensus 15 ~A~~~g-~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~-----~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 15 KATQYG-IYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYIS-----KGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHTT-CHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH-----TTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHcC-ChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHH-----cCCcchhhcCCcCCChhHHHHHcC
Confidence 355677 77777777765433 22232222 23444556677655544443 3322221 11123455566678
Q ss_pred ChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc---chHHHHHHHHhccCChhhHHH
Q 037178 148 FPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN---FTFPCVIKACGGIADVGFGSG 221 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~a~~ 221 (311)
+.+-+..+++.-..+ +...++.+ ...+..|+.+-+..+++ .|..++. .-.+.+..++.+ +......
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~- 159 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTSIVAYLIA-----KGQDVDMMDQNGMTPLMWAAYR-THSVDPT- 159 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHH-CCSSTTH-
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHHHHHHHHh-----cCCCccccCCCCCcHHHHHHHh-CChHHHH-
Confidence 877777777653322 22223333 33355566554444433 3444432 223334444433 3322333
Q ss_pred HHHHHHHhCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCCcchHHHHHHhh
Q 037178 222 VHGMAAKMGLIGDVFV---SNALIAMYGKCAFVEEMVKLFEVMPERNLVS--WNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 222 ~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
..+.+.|..++... -.+.+..-++.|+.+-+..+++.-.+++... -.+.+...++.|+.+-+..+++..
T Consensus 160 --~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 160 --RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp --HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred --HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 33344554443211 1234445567788887777777654433221 112344456677777666666655
No 268
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.59 E-value=12 Score=27.37 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCCCC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNEL--YTDVLSIFVELSSDTELKP 198 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p 198 (311)
..+.++.-|...|+.++|.+.++++..| ..+.+..+..++-+.++ .+.+..++..+.. .|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~-~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcC
Confidence 4466888888899999999999998866 33456666667666432 4567788888876 54433
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.36 E-value=5.1 Score=32.38 Aligned_cols=114 Identities=8% Similarity=-0.079 Sum_probs=72.7
Q ss_pred HHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhc
Q 037178 171 VSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMG--LIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~ 248 (311)
+....+.|+.+++++....-.+ . -+-|...-..++.-+|-.|++++|.+=++...+.. ..+...+|..+|.+-...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR-~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIK-A-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHH-T-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-h-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence 3456788999999988777654 2 22355666788899999999999998888777663 222344555555542211
Q ss_pred CCHHHHHHHHhhCCCC----ChhhH-HHHHHHHH--hCCCcchHHHHHHhh
Q 037178 249 AFVEEMVKLFEVMPER----NLVSW-NSIICGFS--ENGFSCESFDLLIKM 292 (311)
Q Consensus 249 g~~~~A~~~~~~m~~~----~~~~y-~~li~~~~--~~g~~~~a~~l~~~m 292 (311)
.++|..-..| ....| ..|+.+.. ..|+.++|.++-.+.
T Consensus 82 ------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 82 ------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp ------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2344443333 22234 34555544 469999999998888
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.86 E-value=25 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 216 VGFGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 216 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
..++..+|..|...|+-- -...|-.....+...|++.+|.+||+.-.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555444422 234444444444555555555555554443
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.09 E-value=32 Score=27.01 Aligned_cols=215 Identities=9% Similarity=-0.018 Sum_probs=112.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh---hHHHHHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF---IINTRLITMY 143 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~ll~~~ 143 (311)
+.+...+..| +.+-+..+++.-.. ...|..-.+. +...+..|+.+. .+.+. +.|..++. .-+ +.+...
T Consensus 41 t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll-~~g~~~~~~~~~g~-t~L~~A 112 (285)
T 1wdy_A 41 TPLHNAVQMS-REDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSVKL----LKLFL-SKGADVNECDFYGF-TAFMEA 112 (285)
T ss_dssp CHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHHH----HHHHH-HTTCCTTCBCTTCC-BHHHHH
T ss_pred cHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHHH----HHHHH-HcCCCCCccCcccC-CHHHHH
Confidence 3455566777 77766666655333 2223222222 333344566544 44444 44544432 222 245556
Q ss_pred HhcCChhHHHHHHHhcCCCChH-------------HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc---chHHHHH
Q 037178 144 SLCGFPLDSRRVFDSLKTRNLF-------------QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN---FTFPCVI 207 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~~~~-------------~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~t~~~li 207 (311)
++.|+.+-...+++.-...+.. -+ +.+...++.|+.+-+..+++.. |..++. .-.+.+
T Consensus 113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l- 186 (285)
T 1wdy_A 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNAL- 186 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHH-
T ss_pred HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHH-
Confidence 6778888888787765433211 11 2334445567766665555432 333332 223333
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHhhCC-C---CChhhHHHHHHHHHhCCC
Q 037178 208 KACGGIADVGFGSGVHGMAAKMGLIGDVF--VSNALIAMYGKCAFVEEMVKLFEVMP-E---RNLVSWNSIICGFSENGF 281 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~-~---~~~~~y~~li~~~~~~g~ 281 (311)
...+..|..+...++.+.+.+.|..++.. .-.+.+..-++.|+.+-+..+++... . +|..-.+.+ ..-++.|+
T Consensus 187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~ 265 (285)
T 1wdy_A 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKL 265 (285)
T ss_dssp HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCc
Confidence 33445566666677888888888766532 12234455567888888888887332 2 333223333 33344555
Q ss_pred cchHHHHHHhhhhccCCCCCCc
Q 037178 282 SCESFDLLIKMMGCEEGFIPDV 303 (311)
Q Consensus 282 ~~~a~~l~~~m~~~~~g~~P~~ 303 (311)
. ++.+-+ .+.|..||.
T Consensus 266 ~----~i~~~L--l~~Ga~~~~ 281 (285)
T 1wdy_A 266 K----KIAELL--CKRGASTDC 281 (285)
T ss_dssp H----HHHHHH--HHHSSCSCC
T ss_pred H----HHHHHH--HHcCCCCCc
Confidence 4 334444 455777664
No 272
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=72.26 E-value=27 Score=25.88 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=71.3
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhH--HHHHHHHHHhc
Q 037178 71 TTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFII--NTRLITMYSLC 146 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~ll~~~~~~ 146 (311)
...+..| +.+....++..-.. ...|..-++. +...++.|+.+.+ +.+. +.|..++... -.+.+...+..
T Consensus 10 ~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll-~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 10 LEAANQR-DTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEIA----KALI-DRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHHTT-CHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHhc-cHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHH-HcCCCCCCCCCCCCCHHHHHHHc
Confidence 3345667 77777777765442 2223222223 3333455665443 3344 4444443221 12234455667
Q ss_pred CChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 037178 147 GFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 147 g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 222 (311)
|+.+-+..+++.-. ..|..-.+.+ ...++.|+.+-+..+++.-.. .--..|..-.+.+..++........-.++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGRE-DIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCC-CTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCC-CcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 77777777775433 1222222222 333556666655555544311 11112222333343333322223333556
Q ss_pred HHHHHHhCCCCc
Q 037178 223 HGMAAKMGLIGD 234 (311)
Q Consensus 223 ~~~m~~~g~~~~ 234 (311)
.+.+.+.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666677776554
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.69 E-value=11 Score=32.69 Aligned_cols=58 Identities=7% Similarity=-0.084 Sum_probs=27.0
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHhcCChhHHHHHHHh
Q 037178 100 TGVLLQACGHEKDIEIGKRVHELVSASTQ--FSNDFIINTRLITMYSLCGFPLDSRRVFDS 158 (311)
Q Consensus 100 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 158 (311)
...+...+.+.|+++.|.+.+.++. ... ...-...+-.++..+...+++..+...+++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~-~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSL-SKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444455555555555555554 221 122233444455555555555555544444
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.67 E-value=25 Score=25.27 Aligned_cols=66 Identities=8% Similarity=-0.233 Sum_probs=40.3
Q ss_pred CCCcchHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 197 KPDNFTFPCVIKACGGIA---DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 197 ~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.|+..|--...-++.+.. +..++..+++.+.+.+-.-.....--|.-++.|.|++++|.+..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345544444445555554 445677777777776532234444455567778888888888777765
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.91 E-value=47 Score=28.05 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
...+|.-|...+ +.++|...++.+..
T Consensus 57 ~~~ii~EYf~~~-d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHG-DTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHhCC
Confidence 578899999999 99999999999876
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.97 E-value=23 Score=27.96 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc----CCC----ChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH----NAD----LKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRL 139 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~----~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l 139 (311)
--|+.+.... ++++|.+++++... .+. +.......++.-.....-..+..+.+++. . ..+.......
T Consensus 23 deLDv~IA~r-~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~ 97 (235)
T 2d2s_A 23 EEIDIELARL-RFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHH
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHH
Confidence 3467788888 99999999998887 332 11223333443333333344445555553 3 3445555566
Q ss_pred HHHHHhcCChhHHHHHHHhc
Q 037178 140 ITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m 159 (311)
+..+.+.|+-++|..+|=+.
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 78888888888888887654
No 277
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=67.79 E-value=53 Score=27.41 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCC---hHHHHHHHHHHHhCC-ChhhHHHHHHHhhh
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKTRN---LFQWNALVSGFTKNE-LYTDVLSIFVELSS 192 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~~~---~~~y~~li~~~~~~g-~~~~a~~~~~~m~~ 192 (311)
..++.-|...|+.++|...++++..|. .+.+..+..++-+.. ..+.+..++..+.+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~ 74 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLC 74 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776552 223333333333322 12344455555554
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.93 E-value=56 Score=31.66 Aligned_cols=148 Identities=10% Similarity=0.056 Sum_probs=80.3
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc-chHH---HHHHHHhc
Q 037178 140 ITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN-FTFP---CVIKACGG 212 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m~~--~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~t~~---~li~~~~~ 212 (311)
-..|+-.|+-+-...++..+.+ . ++.-.-++.-++...|+.+.+..+.+.+.. . .+. .-|. ++.-+|+.
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-S---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-C---SCHHHHHHHHHHHHHHTTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHHhcC
Confidence 3334455776666666665432 2 222233344445577888888888888775 2 222 2233 33456778
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh--hHHHHHHHHHhCCCc-chHHHH
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-RNLV--SWNSIICGFSENGFS-CESFDL 288 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~--~y~~li~~~~~~g~~-~~a~~l 288 (311)
.|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+ .|.. ---++.-|....|.. .+|.++
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 888877777888777543 22333333333344446766667777765542 2332 222333444444443 456666
Q ss_pred HHhh
Q 037178 289 LIKM 292 (311)
Q Consensus 289 ~~~m 292 (311)
+..+
T Consensus 652 L~~L 655 (963)
T 4ady_A 652 LDPL 655 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 279
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=65.63 E-value=19 Score=25.55 Aligned_cols=66 Identities=9% Similarity=-0.215 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 198 PDNFTFPCVIKACGGIA---DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 198 p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
|+..|--...-++.+.. +..++..++.++.+.+-.-.....--|.-++.|.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444443 4456777777777665222344555556677788888888887777654
No 280
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=64.10 E-value=17 Score=24.09 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHH
Q 037178 221 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDL 288 (311)
Q Consensus 221 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l 288 (311)
.+++.+.+.|+- +......+-. .....+.+.|.++++.+..++..+|..++.++...|+.+-|..+
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 477777777743 3333333332 00125789999999999999999999999999887876555443
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.94 E-value=18 Score=25.41 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCCcH
Q 037178 167 WNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA--DVGFGSGVHGMAAKMGLIGDV 235 (311)
Q Consensus 167 y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~ 235 (311)
.+.++.-|...|+.++|.+.++++.. ... -...+...+..++-+.+ ..+....++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-Ccc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 56788899999999999999999864 111 12344556666666654 245677777777777755443
No 282
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=62.57 E-value=29 Score=22.59 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchH
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCES 285 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a 285 (311)
...+++.+.+.|+- +..-+..+-. .....++|.++++.+.+++..+|..++.++...|...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677788888743 3444444433 367888999999999999999999999999988864443
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.48 E-value=17 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=22.3
Q ss_pred HhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 74 CEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 74 ~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
.+.| ++++|++....-.+ .+-|...-..++..+|-.|++++|..-++...
T Consensus 8 l~~g-~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTT-CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444 44444444443333 33344444444444444444444444444433
No 284
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=61.49 E-value=28 Score=26.35 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=8.2
Q ss_pred HhcCCHHHHHHHHhhC
Q 037178 246 GKCAFVEEMVKLFEVM 261 (311)
Q Consensus 246 ~~~g~~~~A~~~~~~m 261 (311)
++.|+.+-+..+++.-
T Consensus 148 ~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 148 ASVGSLKLIELLCGLG 163 (228)
T ss_dssp HHTTCHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHhcC
Confidence 4455555555555443
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=61.07 E-value=53 Score=25.07 Aligned_cols=44 Identities=7% Similarity=0.106 Sum_probs=32.6
Q ss_pred hhHHHHHHHhcCCC-ChH-------HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 149 PLDSRRVFDSLKTR-NLF-------QWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 149 ~~~A~~l~~~m~~~-~~~-------~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
++.|..+|+.+.+- |.. .--..+..|.++|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 67899999998842 321 123567789999999999999999543
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.89 E-value=78 Score=28.27 Aligned_cols=61 Identities=7% Similarity=-0.029 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHhcCCCCh-------HHHH-HHHHHHHhCCChhhHHHHHHHhhh
Q 037178 132 DFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL-------FQWN-ALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-------~~y~-~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
-..++|.+++.|...+.++.|.++..+..-|.. ..|. .+...+.-.+++.+|.+.+.....
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356889999999999999999999998865421 2222 344556678899999999888754
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.10 E-value=51 Score=23.95 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=33.3
Q ss_pred hhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc
Q 037178 181 TDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD 234 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 234 (311)
+++.++|..|.. .|+.-.. .-|-.....+...|++.+|.++++.=++.+-.|-
T Consensus 82 ~dp~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYN-HGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHT-TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 446677777766 6665543 3455666666666777777777776666665553
No 288
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=57.97 E-value=34 Score=26.06 Aligned_cols=153 Identities=9% Similarity=-0.080 Sum_probs=68.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC----CCchhhHHHHHHHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ----FSNDFIINTRLITM 142 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g----~~~~~~~~~~ll~~ 142 (311)
.+...++.| +.+.+..+++.-.. ...|..-++ .+...+..|+.+.+..+++.-. ... ...|..-.+ .+..
T Consensus 6 ~L~~A~~~g-~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~g~t-~L~~ 81 (232)
T 2rfa_A 6 PLLLAAKEN-DVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAP-ELVFEPMTSELYEGQT-ALHI 81 (232)
T ss_dssp HHHHHHHTT-CHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCG-GGGGCCCCSTTTTTCC-HHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCc-hhccccccccCCCCcC-HHHH
Confidence 344455667 77766666665222 222322222 2333345566666555554322 110 011111222 3444
Q ss_pred HHhcCChhHHHHHHHhcCCCCh----------------HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--HH
Q 037178 143 YSLCGFPLDSRRVFDSLKTRNL----------------FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--FP 204 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~~~----------------~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--~~ 204 (311)
.+..|+.+-+..+++.-...+. .-++.| ...+..|+.+-+..++ + .|..++... -.
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~-~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLLI----E-HGADIRAQDSLGN 155 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHHH----H-TTCCTTCCCTTSC
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHHH----H-CCCCCCCCCCCCC
Confidence 4556777666666665332211 112222 2233444544333333 2 344333221 11
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCC
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGL 231 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~ 231 (311)
+.+...+..|+.+-+..+++.+.+.|.
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 334444555666666666666666654
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=57.60 E-value=69 Score=25.29 Aligned_cols=215 Identities=10% Similarity=-0.076 Sum_probs=115.2
Q ss_pred CCcccHHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCCh----hHHHHHHHHHHhhcCCCchhhHH
Q 037178 61 TQGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDI----EIGKRVHELVSASTQFSNDFIIN 136 (311)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~g~~~~~~~~ 136 (311)
++...-...+.++.+.| ..+ +...+..+.. .++...-...+.+++..|.. .....++..+. .. .++..+-
T Consensus 35 ~~~~vr~~A~~~L~~~~-~~~-~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~-~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRG-GQD-AVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA-LN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHC-CHH-HHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH-HH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccC-Cch-HHHHHHHHHc-CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHH-hc--CCCHHHH
Confidence 34333344555666666 543 3333333332 24555555555666555532 22233333221 11 3555555
Q ss_pred HHHHHHHHhcCC-----hhHHHHHH-HhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 037178 137 TRLITMYSLCGF-----PLDSRRVF-DSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKAC 210 (311)
Q Consensus 137 ~~ll~~~~~~g~-----~~~A~~l~-~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~ 210 (311)
...+.++.+.|. ...+...+ ..+..++...-...+.++.+.|+.+ +...+.++.. .++...-...+.++
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL 183 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFAI 183 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 666666666552 23444444 3455677777777788888887744 4444444433 25555666666677
Q ss_pred hccCC-hhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHH
Q 037178 211 GGIAD-VGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLL 289 (311)
Q Consensus 211 ~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~ 289 (311)
...|. -..+...+..+.+ .++..+-...+.++.+.|+.+....+...+.++++ -...+.++.+.|.. .+...+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~v--r~~a~~aL~~i~~~-~~~~~L 257 (280)
T 1oyz_A 184 NINKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTV--YDDIIEAAGELGDK-TLLPVL 257 (280)
T ss_dssp HHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSSC--CHHHHHHHHHHCCG-GGHHHH
T ss_pred HhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCccH--HHHHHHHHHhcCch-hhhHHH
Confidence 66652 2344444444332 35677777788888888876655555555555553 33456677777763 555555
Q ss_pred Hhh
Q 037178 290 IKM 292 (311)
Q Consensus 290 ~~m 292 (311)
.++
T Consensus 258 ~~~ 260 (280)
T 1oyz_A 258 DTM 260 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.93 E-value=31 Score=26.24 Aligned_cols=181 Identities=7% Similarity=-0.048 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITMYS 144 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~~~ 144 (311)
+.+...+..| +.+-+..+++.-.. ...+...-.+.+...+..|+.+-+ +.+. +.|..++.. ...+.+...+
T Consensus 44 t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~~Ll-~~g~~~~~~~~~g~t~l~~A~ 117 (240)
T 3eu9_A 44 TLLHWAAINN-RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----VQLM-KYGADPSLIDGEGCSCIHLAA 117 (240)
T ss_dssp CHHHHHHHTT-CHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH----HHHH-HTTCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHhC-CHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH----HHHH-HcCCCCcccCCCCCCHHHHHH
Confidence 3455667778 88777777765444 212211112233444455665544 4444 445444321 1123455566
Q ss_pred hcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcc---hHHHHHHHHhccCChhh
Q 037178 145 LCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNF---TFPCVIKACGGIADVGF 218 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---t~~~li~~~~~~g~~~~ 218 (311)
..|+.+-+..+++.-... +..-.+.+..+..+ |...+..+++.+. |..++.. .-.+.+...+..|+.+
T Consensus 118 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L~~~----~~~~~~~~~~~g~t~L~~A~~~~~~~- 191 (240)
T 3eu9_A 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLLLTF----NVSVNLGDKYHKNTALHWAVLAGNTT- 191 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHHHHT----TCCTTCCCTTTCCCHHHHHHHHTCHH-
T ss_pred HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHHHhc----CCCcchhhccCCCcHHHHHHHcCCHH-
Confidence 778888777777754332 33334445544444 4434444444443 3333322 1123455556667765
Q ss_pred HHHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037178 219 GSGVHGMAAKMGLIGDVFV--SNALIAMYGKCAFVEEMVKLFEVMPE 263 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (311)
+.+.+.+.|..++... -.+.+..-.+.|+.+-+..+.+...+
T Consensus 192 ---~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 192 ---VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp ---HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred ---HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 4444455666554221 11334455677888777776665443
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.69 E-value=64 Score=24.68 Aligned_cols=57 Identities=5% Similarity=-0.090 Sum_probs=37.8
Q ss_pred CCChhhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc
Q 037178 177 NELYTDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD 234 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 234 (311)
.+...++.++|..|.. .|+.-.. .-|-.....+...|++.+|.++|+.=++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3345577777777776 6665543 3566666667777777777777777776666663
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.95 E-value=17 Score=26.48 Aligned_cols=68 Identities=7% Similarity=0.037 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccC--ChhhHHHHHHHHHHhCCCCcH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIA--DVGFGSGVHGMAAKMGLIGDV 235 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~ 235 (311)
..+.++.-|...|+.++|.+.++++.. ... -...++..+..++-+.+ ..+.+..++..+.+.|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-Ccc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356788999999999999999999864 111 12344556666666543 245567777777777755443
No 293
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=55.18 E-value=31 Score=26.38 Aligned_cols=207 Identities=8% Similarity=-0.020 Sum_probs=102.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHHHHh
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITMYSL 145 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~~~~ 145 (311)
.+...+..| +.+-+..+++.-.. ...+..-++ .+...+..|+.+.+. .+. +.|..++.. .-.+.+...+.
T Consensus 14 ~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll-~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 14 PLHAAAEAG-HVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVK----YLI-KAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHH----HHH-TTTCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcC-cHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHH----HHH-hCCCCCCCCCCCCCcHHHHHHH
Confidence 344556677 77766666655333 222222222 233334556665444 444 444333221 11234555567
Q ss_pred cCChhHHHHHHHhcC-C---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--HHHHHHHHhccCChhhH
Q 037178 146 CGFPLDSRRVFDSLK-T---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--FPCVIKACGGIADVGFG 219 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~-~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--~~~li~~~~~~g~~~~a 219 (311)
.|+.+-+..+++.-. . ++..-++.+ ...++.|+.+-+..++ + .|..++... -.+.+...+..|..+
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~-~g~~~~~~~~~g~t~L~~A~~~~~~~-- 158 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYKHVDLVKLLL----S-KGSDINIRDNEENICLHWAAFSGCVD-- 158 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHH----H-TTCCTTCCCTTSCCHHHHHHHHCCHH--
T ss_pred cCCHHHHHHHHhCCCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHCCCHH--
Confidence 788887777776642 1 222223333 3334556655444443 3 444443321 112334444556544
Q ss_pred HHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 220 SGVHGMAAKMGLIGDVFV--SNALIAMYGKCAFVEEMVKLFEVMPERNLV--SWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++.+.+.|..++..- -.+.+...++.|+.+-+.-+++.-.+++.. .-.+-+...+..|+.+.+.++.+.+
T Consensus 159 --~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 159 --IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp --HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566665554211 123344456678887777777654443221 1122334445677777888888777
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.70 E-value=50 Score=27.89 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCC---hHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTRN---LFQWNALVSGFTKNEL--YTDVLSIFVELSSDTEL 196 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~---~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 196 (311)
..+.++.-|...|+.++|.+.++++..|. .+.+.++..++-+.++ .+.+.+++..+.. .|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~-~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCC
Confidence 35667777777788888888888877652 3445555555555432 3456677777766 443
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.63 E-value=1.5e+02 Score=28.81 Aligned_cols=127 Identities=8% Similarity=-0.108 Sum_probs=73.3
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhh
Q 037178 139 LITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGF 218 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 218 (311)
++..+...|..+-|.++...+.. +...--.+..+|...|++++|.+.|++.- .|+..+....... +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGG----------HH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccch----------hh
Confidence 56667777888877776655554 44333457778888999999999998874 4554332221100 01
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCh----hhHHHHHHHHHhCC
Q 037178 219 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNL----VSWNSIICGFSENG 280 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~----~~y~~li~~~~~~g 280 (311)
...++.... .-.....=|..++..|-+.+-++.+.++-+... +-|. ..|+.+.++.|-.|
T Consensus 883 ~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111100 001123467788888888888887766555433 2222 36777777776544
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.45 E-value=93 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH 92 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~ 92 (311)
...+|.-|...| +.++|...++.+..
T Consensus 6 ~~~ii~EYf~~~-d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHG-DTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHhCC
Confidence 357788888888 99999999888765
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.04 E-value=96 Score=25.57 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178 141 TMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 141 ~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 220 (311)
..-...|++=+|.+. |.++..=|.+.+++++|.+++..--. .+.+.|+...|-
T Consensus 21 ~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGT 73 (312)
T ss_dssp HHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHH
T ss_pred HHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHH
Confidence 334445666555554 66677888888999999988655422 133345544433
Q ss_pred H----HHHHHHHhCCCCcHHHHHHHHHHHHhcCC--------HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchH
Q 037178 221 G----VHGMAAKMGLIGDVFVSNALIAMYGKCAF--------VEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCES 285 (311)
Q Consensus 221 ~----~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a 285 (311)
+ +++-..+.+++++.....-+++.+..... +.+|.+.-.+..+ -|......+...|.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 3 45555666788888777777777765432 2233333333322 3667888888999999999999
Q ss_pred HHHH
Q 037178 286 FDLL 289 (311)
Q Consensus 286 ~~l~ 289 (311)
...|
T Consensus 154 ~~H~ 157 (312)
T 2wpv_A 154 ERYF 157 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8866
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.93 E-value=51 Score=27.15 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCC--hhhHHHHHHHhhhcCCCCC
Q 037178 135 INTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNEL--YTDVLSIFVELSSDTELKP 198 (311)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p 198 (311)
..+.++.-|...|+.++|.+.++++..| ..+.+.++..++-+.++ .+.+..++..+.. .|+-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~-~~~ls 235 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWK-SSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH-HCSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH-CCCCC
Confidence 3467888888889999999999998876 23455666666665433 4566777888776 44433
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.54 E-value=50 Score=24.13 Aligned_cols=71 Identities=11% Similarity=0.028 Sum_probs=49.7
Q ss_pred hhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh--CCCCcHHHHHHHHHHHHhcCCH
Q 037178 180 YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKM--GLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~ 251 (311)
.+.+.+-+.+..+..|++++. --..+++.+...+..-.|.++++.+.+. +...+..|.---++.+.+.|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 355555565554438888754 3456777777878888999999999887 6666665555556777877754
No 300
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.15 E-value=29 Score=28.84 Aligned_cols=84 Identities=6% Similarity=0.032 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC 146 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~ 146 (311)
+.|...+..| +.+.+..+++.-.. ...|..-.+ .+...+..|+.+-+..+++ .|..++.....+.+..-+..
T Consensus 22 t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 22 EKIHVAARKG-QTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLAS-----VGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHH-----HCCCCCCBTTBCHHHHHHHT
T ss_pred CHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHH-----CCCCccccCCCCHHHHHHHc
Confidence 3444555667 77777777765333 223333333 3444455666655444433 34333332223345555677
Q ss_pred CChhHHHHHHHh
Q 037178 147 GFPLDSRRVFDS 158 (311)
Q Consensus 147 g~~~~A~~l~~~ 158 (311)
|+.+-+..+++.
T Consensus 95 g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 95 NKTDLVVALVEG 106 (364)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 888877777776
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.99 E-value=62 Score=25.41 Aligned_cols=20 Identities=5% Similarity=-0.240 Sum_probs=10.3
Q ss_pred HHHHHhcCChhHHHHHHHhc
Q 037178 140 ITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 140 l~~~~~~g~~~~A~~l~~~m 159 (311)
++.+....++++|..++++.
T Consensus 25 LDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555443
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.41 E-value=83 Score=25.02 Aligned_cols=207 Identities=10% Similarity=-0.075 Sum_probs=110.0
Q ss_pred hcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHH
Q 037178 75 EESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRR 154 (311)
Q Consensus 75 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 154 (311)
+.. +..+..+++..-.-...|..-.+. +...+..|+.+.+..+++. |..++..--.+.+...+..|+.+-+..
T Consensus 8 ~~~-~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 8 NTW-KSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GGC-CHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred Hhc-CHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 344 667777776543213334333333 4444567777765555443 433332222445666778899888888
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc---chHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 155 VFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN---FTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 155 l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
+++.-... |..-++.|.. .+..|+.+-+..+++. |..++. .-+.+.+...+..|..+ +.+.+.+
T Consensus 81 Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~ 150 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTALYY-AVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLS 150 (285)
T ss_dssp HHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHT
T ss_pred HHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHh
Confidence 88764432 3333344443 3566776665555544 333332 22234555556667654 4444555
Q ss_pred hCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCce
Q 037178 229 MGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVI 304 (311)
Q Consensus 229 ~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~ 304 (311)
.|..+ +...-.+.+..-++.|+.+-+.-+++.-.+ +|..-++..+..-+..|+ .++.+.+ .+.|..|+..
T Consensus 151 ~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~~~v~~L--l~~gad~~~~ 224 (285)
T 3kea_A 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----IEMLQAL--FKYDINIYSA 224 (285)
T ss_dssp TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----HHHHHHH--TTSCBCSTTT
T ss_pred CCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----HHHHHHH--HHcCCCCCCC
Confidence 56433 221334445555678888877777765332 333333332333344555 3455556 6778777754
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=48.41 E-value=1.1e+02 Score=24.86 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=47.4
Q ss_pred HHHHHHhhcCCCchhh--HHHHHHHHHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 119 VHELVSASTQFSNDFI--INTRLITMYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 119 ~~~~m~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
+.+.+. +.|..++.. ...+.+...+..|..+.+..+++.-. ..|..-++.|..+ ++.|+.+-+.- +.+
T Consensus 221 i~~lLl-~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~----Ll~ 294 (337)
T 4g8k_A 221 ITHLLL-DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKKIAEL----LCK 294 (337)
T ss_dssp HHHHHH-HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHHHHHH----HHT
T ss_pred HHHHHH-HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHHHHHH----HHH
Confidence 334444 555544322 11224455566777777766665421 1232223344333 44555443322 334
Q ss_pred cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc
Q 037178 193 DTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD 234 (311)
Q Consensus 193 ~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 234 (311)
.|..+|..+ .+...++.|+. ++.+.+++.|-.+|
T Consensus 295 -~GAd~n~~~---~L~~A~~~~~~----~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 295 -RGASTDCGD---LVMTARRNYDH----SLVKVLLSHGAKED 328 (337)
T ss_dssp -TSCSSTTCC---HHHHHHHTTCH----HHHHHHHHTTCCC-
T ss_pred -CCCCCCCCC---HHHHHHHcCCH----HHHHHHHHCcCCCC
Confidence 566666554 23333444543 34455566665554
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.13 E-value=81 Score=23.88 Aligned_cols=176 Identities=10% Similarity=-0.015 Sum_probs=88.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-----CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-----NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLIT 141 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~ 141 (311)
.+...++.| +.+.+..+++.... ...|..-. +.+...+..|+.+- .+.+. +.|..++.. .-.+.+.
T Consensus 12 ~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll-~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 12 PLHIAVVQG-NLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSV----VRLLV-TAGASPMALDRHGQTAAH 84 (241)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHH----HHHHH-HTTCCTTCCCTTSCCHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcccccCC-CHHHHHHHcCCHHH----HHHHH-HcCCCccccCCCCCCHHH
Confidence 345556778 88887777775432 22222222 23444455666654 44444 455444322 1123455
Q ss_pred HHHhcCChhHHHHHHHhcCC-------CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch---HHHHHHHHh
Q 037178 142 MYSLCGFPLDSRRVFDSLKT-------RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT---FPCVIKACG 211 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~-------~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t---~~~li~~~~ 211 (311)
..+..|+.+-+..+++.... .+..-++.+..+ ++.|+.+-+..++ + .|..++... -.+.+...+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~~~~Ll----~-~g~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA-VNTECQETVQLLL----E-RGADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHH----H-TTCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHH-HHcCCHHHHHHHH----H-cCCCcccccccCCCcHHHHHH
Confidence 56778888888888877541 122223333333 4455654444443 3 444444322 223444555
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDVFV--SNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
..|+.+ +++.+.+.|..++... -.+.+..-++.|+.+-+..+++.-
T Consensus 159 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 206 (241)
T 1k1a_A 159 ENNSLS----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206 (241)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred HcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 666654 4444555665553211 122333345667776666666543
No 305
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=46.30 E-value=39 Score=25.61 Aligned_cols=175 Identities=9% Similarity=-0.019 Sum_probs=83.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh---hHHHHHHHHH
Q 037178 69 EITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF---IINTRLITMY 143 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~ll~~~ 143 (311)
.+...++.| +.+....+++.-.. ...|..-.+. +...+..|+.+.+. .+. +.|..++. .-++ .+...
T Consensus 9 ~l~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll-~~g~~~~~~~~~g~t-~L~~A 80 (231)
T 3aji_A 9 MICNLAYSG-KLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVE----FLL-QLGVPVNDKDDAGWS-PLHIA 80 (231)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHH----HHH-HTTCCSCCCCTTSCC-HHHHH
T ss_pred hHHHHHHhC-CHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHH----HHH-HhCCCCCCcCCCCCC-HHHHH
Confidence 466667788 88888888876543 2233332233 33334556655443 334 44443332 2222 34455
Q ss_pred HhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--HHHHHHHHhccCChhh
Q 037178 144 SLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--FPCVIKACGGIADVGF 218 (311)
Q Consensus 144 ~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--~~~li~~~~~~g~~~~ 218 (311)
+..|+.+-+..+++.-... |..-++.+ ...+..|+.+-+..++ + .|..++... -.+.+...+..|+.+-
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~-~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIAVMLL----E-GGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHH----H-TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHcCHHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHH----H-cCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 6667777766666654322 22223333 3334556655444443 3 444443321 1123344445555443
Q ss_pred HHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 219 GSGVHGMAAKMGLIGDVF--VSNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 219 a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
++.+.+.|..++.. .-.+.+..-++.|+.+-+.-+++.-
T Consensus 155 ----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 195 (231)
T 3aji_A 155 ----VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195 (231)
T ss_dssp ----HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ----HHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence 33444455444321 1112333345667766666665543
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.92 E-value=60 Score=23.08 Aligned_cols=44 Identities=2% Similarity=-0.155 Sum_probs=20.6
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC
Q 037178 207 IKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAF 250 (311)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 250 (311)
+..+...+..-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33333344444555555555555444444444444445554443
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.89 E-value=84 Score=23.66 Aligned_cols=180 Identities=8% Similarity=-0.103 Sum_probs=91.6
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCCCh
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELY 180 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~ 180 (311)
+...++.|+++....+++.-. ..--..|..-++ .+...+..|+.+-+..+++.-.. .|..-++.+..+ +..|+.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~ 86 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADK-SLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA-ASAGXD 86 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH-HHcCHH
Confidence 555567888888887776533 211122222233 45556778888888888876432 233334444333 445665
Q ss_pred hhHHHHHHHhhhcCCCCCCcch--HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHH
Q 037178 181 TDVLSIFVELSSDTELKPDNFT--FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFV--SNALIAMYGKCAFVEEMVK 256 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~ 256 (311)
+-+..++ + .|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+..
T Consensus 87 ~~v~~Ll----~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 87 EIVKALL----V-KGAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp HHHHHHH----H-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHH----H-cCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 5444433 3 444443321 123344445556655 4444555665543211 1233444456788887777
Q ss_pred HHhhCCCCC---hhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178 257 LFEVMPERN---LVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 257 ~~~~m~~~~---~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
+++.-..++ ..-.+. +...+..|+.+ +++.+ .+.|..|+
T Consensus 158 Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~L--l~~ga~~~ 199 (231)
T 3aji_A 158 LLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFL--VTQGASIY 199 (231)
T ss_dssp HHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHH--HHTTCCSC
T ss_pred HHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHH--HHCCCCCC
Confidence 776544332 222223 33345566644 34444 45565554
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.67 E-value=95 Score=23.71 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHH---hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh-----hHHHHHHHHHHhCCCCc
Q 037178 170 LVSGFT---KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG-----FGSGVHGMAAKMGLIGD 234 (311)
Q Consensus 170 li~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~-----~a~~~~~~m~~~g~~~~ 234 (311)
+|+++. +..+++.|+..+.+|.+ .| .|.-..-..++-+.-..|.-+ .|...++....-|.+-.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~-~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVE-AG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 445553 45789999999999998 88 777777777777777766533 44555566666675443
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=45.46 E-value=35 Score=22.54 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=27.5
Q ss_pred CChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHH
Q 037178 147 GFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLS 185 (311)
Q Consensus 147 g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~ 185 (311)
...+.|.++++.+..++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 356777888888877777778888888776666554443
No 310
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.08 E-value=2e+02 Score=27.93 Aligned_cols=189 Identities=7% Similarity=-0.019 Sum_probs=101.3
Q ss_pred HHHhcCCCHHHHHHHHHhhcc-CCCChhhHH--HHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCC
Q 037178 72 TLCEESKSLNKALSLLQENLH-NADLKEATG--VLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGF 148 (311)
Q Consensus 72 ~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~ 148 (311)
+.+-.|..-+++.+.+..+.. ..+...... ++...+...|+-+....++..+. +.. .-+..-..++--++.-.|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~-e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ-ETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh-ccC-cHHHHHHHHHHHHhhhCCC
Confidence 443344223455665555543 111111112 23334556777777888888776 322 2222222333333446688
Q ss_pred hhHHHHHHHhcCC-CCh-HHHH---HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHH--HHhccCChhhHHH
Q 037178 149 PLDSRRVFDSLKT-RNL-FQWN---ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIK--ACGGIADVGFGSG 221 (311)
Q Consensus 149 ~~~A~~l~~~m~~-~~~-~~y~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~--~~~~~g~~~~a~~ 221 (311)
-+.+..+.+.+.. .+. +-|. ++.-+|+..|+.....++++.+.. . ++..+-...+- ++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d---~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-D---SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-C---SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-C---CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888777652 333 2333 344567788888777778888876 2 22222333333 4445677777777
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHhhCC-CCChh
Q 037178 222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFV-EEMVKLFEVMP-ERNLV 267 (311)
Q Consensus 222 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~-~~~~~ 267 (311)
+++.+.+.+ .|.+.--.++.-+....|+. .+|..++..+. ++|..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 776665554 45554444444455545443 56666777665 34443
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.58 E-value=52 Score=24.25 Aligned_cols=54 Identities=4% Similarity=-0.055 Sum_probs=35.5
Q ss_pred hhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcH
Q 037178 181 TDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDV 235 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 235 (311)
+.+.++|..|.. .|+.-.. ..|-.....+-..|++.+|.++|..=++.+-.|-.
T Consensus 77 ~~p~~if~~L~~-~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHN-QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHH-TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 446667777776 6665543 34566666666777777777777777777666643
No 312
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=44.09 E-value=71 Score=27.02 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCC
Q 037178 137 TRLITMYSLCGFPLDSRRVFDSLKTR 162 (311)
Q Consensus 137 ~~ll~~~~~~g~~~~A~~l~~~m~~~ 162 (311)
..+|.-|...|++++|...++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 34555555556666666666655544
No 313
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.87 E-value=2e+02 Score=26.59 Aligned_cols=82 Identities=10% Similarity=-0.087 Sum_probs=42.0
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhc---C
Q 037178 71 TTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLC---G 147 (311)
Q Consensus 71 ~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~---g 147 (311)
.++.-.| +++.|++.+-... ..|...+.+.+..++-.+- ...++..= .+ .| ..-+..||..|.+. .
T Consensus 302 ~vLlLtg-qFE~AI~~L~~~~--~vdAVH~AIaL~~~gLL~~---~~~lls~~---~~-~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 302 QTLLLSG-LYGLAIDYTYTFS--EMDAVHLAIGLASLKLFKI---DSSTRLTK---KP-KR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp HHHHHTT-CHHHHHHHHHTTC--HHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHh-hHHHHHHHHHhcC--chhHHHHHHHHHHcCCccC---CCcccccC---CC-cc-cccHHHHHHHHHHHhhcC
Confidence 3444567 8888888776552 3455666666665554432 11111110 01 11 22356678888765 6
Q ss_pred ChhHHHHHHHhcCCCC
Q 037178 148 FPLDSRRVFDSLKTRN 163 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~~ 163 (311)
+..+|.+.|--+.-.+
T Consensus 371 d~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 371 DPRVAVEYLVLITLNE 386 (661)
T ss_dssp CHHHHHHHHHGGGGSC
T ss_pred CHHHHHHHHHHHhccC
Confidence 7778888776664433
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.65 E-value=43 Score=26.13 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=27.9
Q ss_pred hhHHHHHHHhhhcCCCCCCc-chHHHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 037178 181 TDVLSIFVELSSDTELKPDN-FTFPCVIKACGGIADVGFGSGVHGMAAKMGLIG 233 (311)
Q Consensus 181 ~~a~~~~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 233 (311)
+++.++|..|.. .|+.-.. .-|-.....+...|++.+|.++|..=++.+-.|
T Consensus 131 ~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAH-HHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHH-TTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHH-CCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555555 5554432 344455555555566666666655555555444
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.14 E-value=1.1e+02 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCCC-CCh-------hhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 251 VEEMVKLFEVMPE-RNL-------VSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 251 ~~~A~~~~~~m~~-~~~-------~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++.|+.+|+.+.+ .|. ..=...+..|.+.|.+++|.+++++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 5677778877774 221 11233455677888888888888875
No 316
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.83 E-value=95 Score=22.29 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=10.9
Q ss_pred HHHhccCChhhHHHHHHHHHHh
Q 037178 208 KACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
-++.+.|++++|.++.+.+.+.
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHhc
Confidence 3445555555555555554443
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.81 E-value=97 Score=22.70 Aligned_cols=51 Identities=8% Similarity=-0.126 Sum_probs=34.4
Q ss_pred ccCChhhHHHHHHHHHHhCCCC--cHHHHHHHHH------HHHhcCCHHHHHHHHhhCC
Q 037178 212 GIADVGFGSGVHGMAAKMGLIG--DVFVSNALIA------MYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~ 262 (311)
..|++-+|-++++..-+..-.+ ....|..||. ...+.|+...|.+++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3378888888887776654445 5566777777 2245788888888777654
No 318
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=41.78 E-value=86 Score=21.79 Aligned_cols=137 Identities=11% Similarity=-0.067 Sum_probs=62.7
Q ss_pred HHHHHHhcCChhHHHHHHHhcC-CC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc---chHHHHHHHHh
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK-TR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN---FTFPCVIKACG 211 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~-~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~t~~~li~~~~ 211 (311)
.+...++.|+.+.+..+++.-. .+ |..-++.+ .. +..|+.+-+..+++ .|..++. .-.+ .+...+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~-~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t-~L~~A~ 76 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QV-MMFGSTAIALELLK-----QGASPNVQDTSGTS-PVHDAA 76 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHH-HH-SCTTCHHHHHHHHH-----TTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHH-HH-HHcCCHHHHHHHHH-----CCCCCCCcCCCCCC-HHHHHH
Confidence 3444556677777777776621 11 22223333 33 55666554444442 3333332 2222 233334
Q ss_pred ccCChhhHHHHHHHHHHhCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCcchH
Q 037178 212 GIADVGFGSGVHGMAAKMGLIGDV---FVSNALIAMYGKCAFVEEMVKLFEVMPERN---LVSWNSIICGFSENGFSCES 285 (311)
Q Consensus 212 ~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~y~~li~~~~~~g~~~~a 285 (311)
..|+.+ +++.+.+.|..++. .-.+. +..-++.|+.+-+.-+++. ..++ ..-.+. +...+..|+.+-+
T Consensus 77 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~-l~~A~~~~~~~~v 149 (156)
T 1bd8_A 77 RTGFLD----TLKVLVEHGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP-LELALQRGAQDLV 149 (156)
T ss_dssp HTTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH-HHHHHHSCCHHHH
T ss_pred HcCcHH----HHHHHHHcCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH-HHHHHHcCcHHHH
Confidence 445544 33344455544332 22222 3333456777777666665 4322 222222 3333456666555
Q ss_pred HHHHH
Q 037178 286 FDLLI 290 (311)
Q Consensus 286 ~~l~~ 290 (311)
..+++
T Consensus 150 ~~Ll~ 154 (156)
T 1bd8_A 150 DILQG 154 (156)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55444
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.98 E-value=19 Score=28.15 Aligned_cols=88 Identities=9% Similarity=-0.059 Sum_probs=41.5
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc--CCCC-------hhhHHHHHHhc--ccCCChhHHHHHHHHHHhhcC---------C
Q 037178 70 ITTLCEESKSLNKALSLLQENLH--NADL-------KEATGVLLQAC--GHEKDIEIGKRVHELVSASTQ---------F 129 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~--~~~~-------~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~g---------~ 129 (311)
+...++.| +.+....+++.+.. ..++ ..-.+.+..+. ++.|+.+.+..+++.-. ..+ +
T Consensus 9 L~~A~~~g-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 9 LFDIVSRG-SPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE-KTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHT-CGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH-HTTCHHHHHTCCB
T ss_pred HHHHHHhC-CHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc-cccchHhhhcccc
Confidence 34445666 77766666664333 1111 11223333332 25677777776666543 211 0
Q ss_pred C-chhhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 130 S-NDFIINTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 130 ~-~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
. .|..-. +.+...+..|+.+-+..+++.-.
T Consensus 87 ~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 87 RDVYYRGQ-TALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp CCSSEESB-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccCCC-CHHHHHHHcCCHHHHHHHHhCCC
Confidence 0 011111 23444455677776666666533
No 320
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.19 E-value=73 Score=27.11 Aligned_cols=204 Identities=10% Similarity=0.015 Sum_probs=96.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHHHH
Q 037178 68 QEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITMYS 144 (311)
Q Consensus 68 ~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~~~ 144 (311)
+.+...+..| ..+-+..+++.-.. ...+.... +.+...++.|+.+-+.-++ +.|..++.. ...+.+...+
T Consensus 49 t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll-----~~ga~~~~~~~~g~t~L~~A~ 121 (437)
T 1n11_A 49 TPLHMAARAG-HTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLL-----ENNANPNLATTAGHTPLHIAA 121 (437)
T ss_dssp CHHHHHHHHT-CHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHH-----HHTCCTTCCCTTCCCHHHHHH
T ss_pred CHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHH-----hCCCCCCCCCCCCCcHHHHHH
Confidence 3444555667 77666666654333 22222222 2333344556655444333 334333321 1122445556
Q ss_pred hcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--HHHHHHHHhccCChhhH
Q 037178 145 LCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--FPCVIKACGGIADVGFG 219 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--~~~li~~~~~~g~~~~a 219 (311)
+.|+.+-+..+++.-... +..-++. +...++.|+.+-+..+++ .|..++... -.+.+...+..|+.+
T Consensus 122 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~-- 193 (437)
T 1n11_A 122 REGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVAELLLE-----RDAHPNAAGKNGLTPLHVAVHHNNLD-- 193 (437)
T ss_dssp HHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHHH-----TTCCTTCCCSSCCCHHHHHHHTTCHH--
T ss_pred HcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCCHH--
Confidence 778888877777764432 2222233 334456677655444443 344443321 112334445556554
Q ss_pred HHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCcchHHHHH
Q 037178 220 SGVHGMAAKMGLIGDVFV--SNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSIICGFSENGFSCESFDLL 289 (311)
Q Consensus 220 ~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~l~ 289 (311)
+++.+.+.|..++... -.+.+..-++.|+.+-+..+++.-... +..-.+.| ...+..|+.+-+..++
T Consensus 194 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll 265 (437)
T 1n11_A 194 --IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL-HLAAQEGHAEMVALLL 265 (437)
T ss_dssp --HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHH
T ss_pred --HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHH
Confidence 4445556665443221 112334446778888777777754432 22223333 3344566654443333
No 321
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.18 E-value=48 Score=19.62 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=14.6
Q ss_pred hCCCcchHHHHHHhhhhccCCCCCC
Q 037178 278 ENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 278 ~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
..|+++.|+..+-+| ...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m--~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQM--GEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHS--SCCCCSCC
T ss_pred cCCCHHHHHHHHHcC--cCCCCCCC
Confidence 356666677777666 56666665
No 322
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=37.95 E-value=60 Score=23.29 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=36.6
Q ss_pred hhhHHHHHHHhhhcCCCCC---CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHH
Q 037178 180 YTDVLSIFVELSSDTELKP---DNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNA 240 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 240 (311)
++.++++.++..+..|..| +..++.-++....+.|-++....+......++. .+.+|+.
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~~w~~m~~~RN~--tvH~Y~e 115 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNI--TSHTYDQ 115 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHHHHHHHHHHHTT--GGGTTSH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHHHHHHHHHHhhH--hcccccH
Confidence 4556666666554456655 477888888888888888777444444444443 3444443
No 323
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.37 E-value=39 Score=23.73 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=12.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHh
Q 037178 69 EITTLCEESKSLNKALSLLQE 89 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~ 89 (311)
.+...++.| +.+.+..+++.
T Consensus 5 ~L~~A~~~g-~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARG-DVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHT-CHHHHHHHHHT
T ss_pred HHHHHHHhC-CHHHHHHHHHh
Confidence 344455566 67777666666
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.51 E-value=1e+02 Score=22.06 Aligned_cols=57 Identities=9% Similarity=-0.049 Sum_probs=28.9
Q ss_pred CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 194 TELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 194 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 21 ~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 21 NGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp CC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 55544332 2234444444455566666666666665444554444455555655543
No 325
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=35.68 E-value=1.8e+02 Score=23.81 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred HHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH----HHhcCCHHHHHHHHhh
Q 037178 185 SIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM----YGKCAFVEEMVKLFEV 260 (311)
Q Consensus 185 ~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~ 260 (311)
+++..+.+ .|+.|..+++.-++..+.+.=.++.+.++++.+...|...-..+.-+++.. ..+..++++....++.
T Consensus 209 ~L~~hL~~-~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEE-HEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHH-TTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 55666777 899999999999999999988899999999999999865333333334432 2345689999999987
Q ss_pred -CCCCChhhHHHHHHHHHhCC
Q 037178 261 -MPERNLVSWNSIICGFSENG 280 (311)
Q Consensus 261 -m~~~~~~~y~~li~~~~~~g 280 (311)
....+...-..+|.--....
T Consensus 288 ~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 288 TLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp TTTCCCHHHHHHHHHHHHHCC
T ss_pred hCCCCCHHHHHHHHHHHHhCC
Confidence 44555555555665444443
No 326
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=34.09 E-value=78 Score=22.40 Aligned_cols=47 Identities=17% Similarity=0.010 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhc
Q 037178 112 DIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 112 ~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m 159 (311)
+..++..+++++. +.+........=-|--++.|.|++++|.+..+.+
T Consensus 58 d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 58 DERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445555555555 3331111111111344455555555555555544
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.98 E-value=78 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=11.6
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 168 NALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
..++..+...+.+-.|.++++.+.+
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 3344444444444455555555544
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.90 E-value=89 Score=22.00 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=31.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 204 PCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
..+++.+...++.-.|.++++.+.+.+...+..|.---++.+.+.|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345666666666777888888887776666665555556666666654
No 329
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=33.75 E-value=1.3e+02 Score=21.57 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=20.6
Q ss_pred HHHHHHHhhCCC--CChhhHHHHHHHHHhCCCcchHHHHHHh
Q 037178 252 EEMVKLFEVMPE--RNLVSWNSIICGFSENGFSCESFDLLIK 291 (311)
Q Consensus 252 ~~A~~~~~~m~~--~~~~~y~~li~~~~~~g~~~~a~~l~~~ 291 (311)
+++.++|+.+-. ...++|.-++..+.+...+-+....++.
T Consensus 140 ~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 445555555532 2345666666665555544445544443
No 330
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.68 E-value=2.8e+02 Score=25.34 Aligned_cols=226 Identities=8% Similarity=-0.024 Sum_probs=132.1
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCChhh----HHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLKEA----TGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYS 144 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~ 144 (311)
+.-+++ . +.+.|..+|..... ...+... +..+.......+...++...+.... ......+..-+ .+..-.
T Consensus 222 ~~rlar-~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~--~~r~Al 296 (618)
T 1qsa_A 222 FASVAR-Q-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MRSQSTSLIER--RVRMAL 296 (618)
T ss_dssp HHHHHH-H-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HTCCCHHHHHH--HHHHHH
T ss_pred HHHHHh-c-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-ccCCChHHHHH--HHHHHH
Confidence 444444 3 67999999998865 3333332 3444445555664556666666654 33323333333 344455
Q ss_pred hcCChhHHHHHHHhcCCC--ChHHHHH-HHHHHHhCCChhhHHHHHHHhhhc-----------CCCCC----Cc------
Q 037178 145 LCGFPLDSRRVFDSLKTR--NLFQWNA-LVSGFTKNELYTDVLSIFVELSSD-----------TELKP----DN------ 200 (311)
Q Consensus 145 ~~g~~~~A~~l~~~m~~~--~~~~y~~-li~~~~~~g~~~~a~~~~~~m~~~-----------~~~~p----~~------ 200 (311)
+.|+++.|...|+.|... +..-|.- +..++...|+.++|..+|+..-.. .|..+ ..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~ 376 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence 779999999999999863 2222222 334566789999999988876441 12111 00
Q ss_pred ch-----HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------hhH
Q 037178 201 FT-----FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNL------VSW 269 (311)
Q Consensus 201 ~t-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~y 269 (311)
.. -..-+..+...|....|...+..+.+. .. ......+.......|..+.+..........+. ..|
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~--~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y 453 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KS--KTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAY 453 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CC--HHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTT
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcch
Confidence 00 112334566778888888777776654 22 22233445555677888887777766654432 356
Q ss_pred HHHHHHHHhCCCcchHHHHHHhhhhccCCCCCCcee
Q 037178 270 NSIICGFSENGFSCESFDLLIKMMGCEEGFIPDVIT 305 (311)
Q Consensus 270 ~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~~~t 305 (311)
..+|..+++.-.++..+-.---. .+.++.|+.+.
T Consensus 454 ~~~i~~~a~~~gv~~~ll~Ai~~--~ES~f~p~a~S 487 (618)
T 1qsa_A 454 NDLFKRYTSGKEIPQSYAMAIAR--QESAWNPKVKS 487 (618)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHH--HHHTTCTTCBC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH--HhCCCCCCCcC
Confidence 77788777776676654332222 56677776543
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.65 E-value=1.1e+02 Score=23.33 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHH---hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh-----hHHHHHHHHHHhCC
Q 037178 170 LVSGFT---KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG-----FGSGVHGMAAKMGL 231 (311)
Q Consensus 170 li~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~-----~a~~~~~~m~~~g~ 231 (311)
+|+++. +..+++.|+..+.+|.+ .|-.|.-..-..++-+.-..|.-+ .|...++....-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~-~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILT-AGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 455554 45789999999999988 888887777777777776666433 34444444455553
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.13 E-value=93 Score=21.57 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=27.8
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 205 CVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
.+++.+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555555666777777776665555555555555666665543
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.86 E-value=1.6e+02 Score=22.02 Aligned_cols=54 Identities=6% Similarity=-0.180 Sum_probs=27.3
Q ss_pred HHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCC
Q 037178 245 YGKCAFVEEMVKLFEVMPER---NLVSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIP 301 (311)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~---~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P 301 (311)
-++.|+.+-+..+++.-.++ |..-+ +.+...+..|+.+-+.++++.+ .+.|..+
T Consensus 128 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~L--l~~g~~~ 184 (232)
T 2rfa_A 128 AACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLL--LSYDGGD 184 (232)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHH--HHTTCSC
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHH--HhcCCch
Confidence 34456666665555543332 22222 2334445566666666666666 5555543
No 334
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.67 E-value=1.5e+02 Score=22.25 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCC--CCcchHHHHHHHHhccCChhhHHHHH
Q 037178 146 CGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELK--PDNFTFPCVIKACGGIADVGFGSGVH 223 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--p~~~t~~~li~~~~~~g~~~~a~~~~ 223 (311)
.|.+..++-++.....-+..=|..| +|-+..++..|...++.+.. ..+. ||+..- ++.+
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~-~kvd~d~~~d~~---~~~f------------- 106 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILE-GKVERDPDVDAR---IQEM------------- 106 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHT-TCSBCCCCCCHH---HHTT-------------
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-cccccCcccccc---ccee-------------
Confidence 4556665555554432222223332 45566677777777777664 4343 322110 0000
Q ss_pred HHHHHhCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHh
Q 037178 224 GMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFE 259 (311)
Q Consensus 224 ~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 259 (311)
.+. +.| ...|+.+...+...|+.+||.+.|.
T Consensus 107 --fvd---~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 107 --FVD---PGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp --SCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --eec---cchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 000 112 4556667777778888888887764
No 335
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.58 E-value=1.5e+02 Score=21.49 Aligned_cols=55 Identities=4% Similarity=-0.133 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH
Q 037178 219 GSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSII 273 (311)
Q Consensus 219 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li 273 (311)
+..+|..|...|+-- -...|......+...|++.+|.+||+.-.+.+......|.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 555555555555433 2344555555555555555555555555444444443333
No 336
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.41 E-value=94 Score=19.21 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=37.1
Q ss_pred hhhcCCCCCCcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 190 LSSDTELKPDNFTFPCVIKACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 190 m~~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
+++ .|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|-+
T Consensus 8 l~~-~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKK-AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHH-TTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHH-cCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 445 666665433 45556665554 5566777888777776555666666666666666643
No 337
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.34 E-value=89 Score=28.18 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhHHHHHHHhcC
Q 037178 138 RLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 138 ~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
.++..|.+.|-.+.|.++++.+.
T Consensus 521 ~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 521 WMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHH
Confidence 34445555555555555554444
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.16 E-value=91 Score=26.33 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC----cchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHH
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSSDTELKPD----NFTFPCVIKACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNA 240 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ 240 (311)
.-..+|.-|...|+.++|.+.++++.. |+ .+.+..+..++-+.. ..+.+-.++..+...|+-+.......
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~-----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~G 88 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA-----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQA 88 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 356889999999999999999999965 43 234444555554432 23445567777777665544444444
Q ss_pred HHHHH
Q 037178 241 LIAMY 245 (311)
Q Consensus 241 li~~~ 245 (311)
+...+
T Consensus 89 f~~ll 93 (364)
T 3l6a_A 89 FLNVL 93 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.06 E-value=1.4e+02 Score=21.14 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=37.7
Q ss_pred hhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 190 LSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 190 m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
+++ .|++++.. -..+++.+...+ .-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 10 L~~-~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQ-RGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHT-TTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHH-cCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 444 77776653 234445555555 668888888888877666665555556677776654
No 340
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.90 E-value=1.5e+02 Score=21.53 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=70.4
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCc---hhhHHHHHHHHHHh
Q 037178 70 ITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSN---DFIINTRLITMYSL 145 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~ll~~~~~ 145 (311)
+...++.| +.+-+..+++.-.. ...|....+. +...+..|+.+.+..+++. .+..+ +..-. +.+...++
T Consensus 43 L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~----~~~~~~~~~~~g~-t~L~~A~~ 115 (201)
T 3hra_A 43 LNIAVHNN-DIEIAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLKH----ATPDLNKHNRYGG-NALIPAAE 115 (201)
T ss_dssp HHHHHHHT-CHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH----SCCCTTCCCTTSC-CSHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc----cCcccccccCCCC-cHHHHHHH
Confidence 44445677 77766666665333 2233322333 3334456777666655543 22122 22112 23455667
Q ss_pred cCChhHHHHHHHhc-CC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHH--HHHHHHhccCChh
Q 037178 146 CGFPLDSRRVFDSL-KT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFP--CVIKACGGIADVG 217 (311)
Q Consensus 146 ~g~~~~A~~l~~~m-~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~--~li~~~~~~g~~~ 217 (311)
.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+ .|..++..... +.+...++.|+.+
T Consensus 116 ~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~ 192 (201)
T 3hra_A 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTE 192 (201)
T ss_dssp TTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHh
Confidence 78888888888775 22 3433445555544333223333555666666 67766644211 2333344445443
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.65 E-value=49 Score=19.66 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=22.3
Q ss_pred hhhHHHHHHHhhhcCCCCCCcchHHHHHHHH-hccC
Q 037178 180 YTDVLSIFVELSSDTELKPDNFTFPCVIKAC-GGIA 214 (311)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~-~~~g 214 (311)
.++|.+.|.+|.++.+| +...||.-.|+.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHhccCCC
Confidence 36788888888774555 4456677777776 4443
No 342
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=29.83 E-value=1.2e+02 Score=25.05 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCc-H--HHHHHHHHH----HHhcCCHHHHHHHH
Q 037178 186 IFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGD-V--FVSNALIAM----YGKCAFVEEMVKLF 258 (311)
Q Consensus 186 ~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~--~~~~~li~~----~~~~g~~~~A~~~~ 258 (311)
+++.+.+ .|+.|..+++.-++..+.+.=.++.+.++++.+...|.... . .+.-+++.. ..+.++++++..++
T Consensus 231 L~~hL~~-~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 231 VHRHLDQ-HEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHH-cCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3444444 56666666777777777766667777777777776664322 1 122222222 22346677777777
Q ss_pred hhCCCC
Q 037178 259 EVMPER 264 (311)
Q Consensus 259 ~~m~~~ 264 (311)
+.+...
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 766653
No 343
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.13 E-value=1.1e+02 Score=21.66 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=6.4
Q ss_pred hhhHHHHHHHhhh
Q 037178 180 YTDVLSIFVELSS 192 (311)
Q Consensus 180 ~~~a~~~~~~m~~ 192 (311)
.-.|.++++.+++
T Consensus 33 h~ta~ei~~~l~~ 45 (145)
T 3eyy_A 33 HATPDDILGEVRK 45 (145)
T ss_dssp SBCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 4445555555544
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.86 E-value=76 Score=22.03 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=28.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178 169 ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV 216 (311)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 216 (311)
.++..+...+..-.|.++++.+++ .+...+..|.--.++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRR-RGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCCE
Confidence 455666666667777777777776 55445555555555555555543
No 345
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.67 E-value=1.2e+02 Score=19.50 Aligned_cols=38 Identities=0% Similarity=-0.077 Sum_probs=29.1
Q ss_pred cCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhH
Q 037178 146 CGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDV 183 (311)
Q Consensus 146 ~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a 183 (311)
....++|.++++.+..++..+|..++.++.+.|...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 46677888888888888888888888888877654433
No 346
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=28.24 E-value=1e+02 Score=25.46 Aligned_cols=78 Identities=10% Similarity=0.181 Sum_probs=54.4
Q ss_pred HHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHH---HhcCCHHHHHHHHhhC
Q 037178 185 SIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMY---GKCAFVEEMVKLFEVM 261 (311)
Q Consensus 185 ~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m 261 (311)
++++.+.+ .|+.|..+++.-++..+.+.=.++.+.++++.+...|...-..+.-+++..+ ....++++....+..+
T Consensus 214 ~L~~hL~~-~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 214 KLFAHFKK-NNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHH-TTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHH-cCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 34556666 8999999999999999998889999999999999888322122222222221 1234678888888877
Q ss_pred CC
Q 037178 262 PE 263 (311)
Q Consensus 262 ~~ 263 (311)
..
T Consensus 293 p~ 294 (334)
T 2qq8_A 293 PE 294 (334)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 347
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.17 E-value=1.7e+02 Score=22.70 Aligned_cols=48 Identities=6% Similarity=0.113 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhcCCCchhh------HHHHHHHHHHhcCChhHHHHHHHhcC
Q 037178 113 IEIGKRVHELVSASTQFSNDFI------INTRLITMYSLCGFPLDSRRVFDSLK 160 (311)
Q Consensus 113 ~~~a~~~~~~m~~~~g~~~~~~------~~~~ll~~~~~~g~~~~A~~l~~~m~ 160 (311)
++.|..+|+.+..+..+..+.. +--..+..|.+.|.+++|.++|++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 3567777777773332222211 11133445566666666666666644
No 348
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.05 E-value=96 Score=18.20 Aligned_cols=40 Identities=5% Similarity=-0.164 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 037178 215 DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 255 (311)
..++|..+-+.+...+ .....+--+-+..+...|++++|+
T Consensus 21 cH~EA~tIA~~L~~~~-~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQEE-CMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTSS-TTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHccchHhHhh
Confidence 4556666666655544 222333333344556667766664
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.02 E-value=69 Score=22.61 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=25.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 169 ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
.++..+...+.+-.|.++++.+++ .+...+..|.---++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKH-KGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCC
Confidence 445555555556666677666665 5444454444444444444443
No 350
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.82 E-value=1.3e+02 Score=21.43 Aligned_cols=55 Identities=9% Similarity=-0.034 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh
Q 037178 162 RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG 217 (311)
Q Consensus 162 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 217 (311)
+-...-..++..+...+.+-.|.++++.+++ .+...+..|.--.++.+...|-+.
T Consensus 24 r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp -CHHHHHHHHHHHHHCSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3445556777777777778888888888876 554555555544555555555443
No 351
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.61 E-value=45 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 037178 136 NTRLITMYSLCGFPLDSRRVFDSLKTRN 163 (311)
Q Consensus 136 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 163 (311)
...+++-|...|+.++|...++++..|+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567788888888888888888887663
No 352
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.60 E-value=3.3e+02 Score=24.28 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCc--chHH-HHHHHHhccCChhhHHHHHHHHHHh
Q 037178 165 FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDN--FTFP-CVIKACGGIADVGFGSGVHGMAAKM 229 (311)
Q Consensus 165 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~t~~-~li~~~~~~g~~~~a~~~~~~m~~~ 229 (311)
..+|.++..|...+.++.|..+..+..--..-.+|. .+|. .+-..+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 579999999999999999999998875300001111 2332 2234455667889998888877654
No 353
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.47 E-value=1.6e+02 Score=20.71 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=36.3
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCCh
Q 037178 150 LDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADV 216 (311)
Q Consensus 150 ~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 216 (311)
+++.+.+++-.-+-...-..++..+...+..-.|.++++.+++ .+...+..|.--.++.+...|-+
T Consensus 7 ~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 7 KEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCCE
Confidence 3444444443333444455666666666666777777777766 54444555544445555555544
No 354
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.45 E-value=1.3e+02 Score=21.04 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=39.1
Q ss_pred hhhcCCCCCCcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCH
Q 037178 190 LSSDTELKPDNFTFPCVIKACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFV 251 (311)
Q Consensus 190 m~~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 251 (311)
+++ .|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+.+.|-+
T Consensus 9 l~~-~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRK-AGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHH-TTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHH-CCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455 67766543 234555666555 6778888998888887666666666666777776654
No 355
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=27.34 E-value=1.2e+02 Score=20.62 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=24.4
Q ss_pred hhhHHHHHHHhh-hcCCCCCCcchHHHHHHHHhccCChhhHH
Q 037178 180 YTDVLSIFVELS-SDTELKPDNFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 180 ~~~a~~~~~~m~-~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 220 (311)
++.++++.++.. +..|+. ..++.-++....+.|-+++..
T Consensus 34 ~Elawk~~k~~l~~~~g~~--~~s~rd~~r~a~~~glI~~~~ 73 (119)
T 1wwp_A 34 FEAFWKALQAYLREKEGLE--GASPKGVIRLAREVGLLRDEE 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCC--CCSHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCchH
Confidence 455555555544 334554 677777777777777776653
No 356
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.98 E-value=51 Score=29.72 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=42.9
Q ss_pred cHHHHHHHHHh--cCCCHHHHHHHHHhhcc-CC-CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHH
Q 037178 65 HFLQEITTLCE--ESKSLNKALSLLQENLH-NA-DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLI 140 (311)
Q Consensus 65 ~~~~li~~~~~--~g~~~~~a~~~~~~m~~-~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll 140 (311)
.|..-|..+.. .. +.........+... .+ -+..-..-++..|++.|-.+.|.++++.+- ..- --+...| .-+
T Consensus 481 LW~vgI~yL~~~~~~-~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g-~k~-l~~g~~g-eAL 556 (570)
T 3f3f_C 481 LWPVAIGLIALSATG-TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLG-NQM-LSAHNII-ESI 556 (570)
T ss_dssp THHHHHHHHHHCSSS-CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH-C--------------
T ss_pred chhHHHHHHhcCCcc-chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-HHH-HHCccHH-HHH
Confidence 46666665554 34 45556666666666 33 345567889999999999999999999887 333 3344566 567
Q ss_pred HHHHhcCChhHHH
Q 037178 141 TMYSLCGFPLDSR 153 (311)
Q Consensus 141 ~~~~~~g~~~~A~ 153 (311)
..|+|+|+++...
T Consensus 557 ~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 557 ANFSRAGKYELVK 569 (570)
T ss_dssp -------------
T ss_pred HHHHHcCChhhcc
Confidence 7889999887653
No 357
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.86 E-value=2.6e+02 Score=23.55 Aligned_cols=202 Identities=10% Similarity=-0.016 Sum_probs=97.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcC
Q 037178 69 EITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCG 147 (311)
Q Consensus 69 li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g 147 (311)
.+...+..| ..+-+.-+++.-.. ...+..... .+...++.|+.+.+..+++.-. ... ..+..-+ +.+...++.|
T Consensus 83 ~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~-~~~-~~~~~g~-t~L~~A~~~g 157 (437)
T 1n11_A 83 PLHCAARIG-HTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEA-SQA-CMTKKGF-TPLHVAAKYG 157 (437)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTC-CSC-CCCTTSC-CHHHHHHHTT
T ss_pred HHHHHHHCC-CHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCC-CCc-CCCCCCC-CHHHHHHHcC
Confidence 344455667 77666666655333 222222222 3344456677766655554321 111 1122222 3455667789
Q ss_pred ChhHHHHHHHhcCCCCh---HHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH--HHHHHHHhccCChhhHHHH
Q 037178 148 FPLDSRRVFDSLKTRNL---FQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF--PCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 148 ~~~~A~~l~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~--~~li~~~~~~g~~~~a~~~ 222 (311)
+.+-+..+++.-..++. ...+. +...+..|+.+-+..+ .+ .|..++...+ .+.+...+..|+.+-+
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~--- 228 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTP-LHVAVHHNNLDIVKLL----LP-RGGSPHSPAWNGYTPLHIAAKQNQVEVA--- 228 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCH-HHHHHHTTCHHHHHHH----GG-GTCCSCCCCTTCCCHHHHHHHTTCHHHH---
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----Hh-CCCCCCCcCCCCCCHHHHHHHcCCHHHH---
Confidence 98888888876543322 22333 3444566776544333 33 4444433221 1334445566665544
Q ss_pred HHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCcchHH
Q 037178 223 HGMAAKMGLIGDVF--VSNALIAMYGKCAFVEEMVKLFEVMPERN---LVSWNSIICGFSENGFSCESF 286 (311)
Q Consensus 223 ~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~y~~li~~~~~~g~~~~a~ 286 (311)
+.+.+.|..++.. .-.+.+..-++.|..+-+..+++.-.+++ ..-++.|. ..++.|+.+-+.
T Consensus 229 -~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~ 295 (437)
T 1n11_A 229 -RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVAD 295 (437)
T ss_dssp -HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHH
T ss_pred -HHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHH
Confidence 4444555443321 11123334456788887777776654433 22233333 334556654433
No 358
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.67 E-value=2.3e+02 Score=22.05 Aligned_cols=59 Identities=2% Similarity=-0.041 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 037178 217 GFGSGVHGMAAKMGLIG-DVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICG 275 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~ 275 (311)
++...+|..|...||-- -...|-.....+...|++.+|.+||+.-.+.+......|...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 190 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQK 190 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 35555666666665433 344555555555666666666666665554444444444333
No 359
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.35 E-value=42 Score=26.10 Aligned_cols=117 Identities=9% Similarity=-0.145 Sum_probs=0.0
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHhhcCCCchh------hHHHHHHHHHHhc---CChhHHHHHHHhcCCCC--------
Q 037178 101 GVLLQACGHEKDIEIGKRVHELVSASTQFSNDF------IINTRLITMYSLC---GFPLDSRRVFDSLKTRN-------- 163 (311)
Q Consensus 101 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~------~~~~~ll~~~~~~---g~~~~A~~l~~~m~~~~-------- 163 (311)
.+.+...++.|+.+.+..+++.+. +.|..++. ..-.+.+...+.. |+.+-+..+++.-...+
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~-~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLR-WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHH-HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHH-HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Q ss_pred ------hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch---------------HHHHHHHHhccCChhhHHHH
Q 037178 164 ------LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT---------------FPCVIKACGGIADVGFGSGV 222 (311)
Q Consensus 164 ------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t---------------~~~li~~~~~~g~~~~a~~~ 222 (311)
..-++.|..+..... .++.+.+.+ .|..++... -.+.+...+..|+.+-+..+
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 155 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRS-----LQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTC-----HHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred ccccccccCCCHHHHHHHcCC-----HHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Q ss_pred HH
Q 037178 223 HG 224 (311)
Q Consensus 223 ~~ 224 (311)
++
T Consensus 156 l~ 157 (256)
T 2etb_A 156 LE 157 (256)
T ss_dssp HH
T ss_pred Hh
No 360
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.32 E-value=1.8e+02 Score=20.72 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=42.4
Q ss_pred HhhhcCCCCCCcchHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 037178 189 ELSSDTELKPDNFTFPCVIKACGGIA-DVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE 252 (311)
Q Consensus 189 ~m~~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 252 (311)
.+++ .|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 7 ~l~~-~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKD-AGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHH-TTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHH-cCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3555 777766542 34556666666 67789999999988876667666666677777777553
No 361
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=26.10 E-value=1.7e+02 Score=20.32 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh---hHHHHHHH
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF---IINTRLIT 141 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~~~~ll~ 141 (311)
+...+...++.| +.+.+..+++.-.. ...|..-.+.+.. .+. |+.+.+..++ +.|..++. .-+ +.+.
T Consensus 5 ~~~~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~-A~~-~~~~~v~~Ll-----~~g~~~~~~~~~g~-t~L~ 75 (162)
T 1ihb_A 5 WGNELASAAARG-DLEQLTSLLQNNVNVNAQNGFGRTALQV-MKL-GNPEIARRLL-----LRGANPDLKDRTGF-AVIH 75 (162)
T ss_dssp CHHHHHHHHHHT-CHHHHHHHTTSCCCTTCCCTTSCCHHHH-CCS-SCHHHHHHHH-----HTTCCTTCCCTTSC-CHHH
T ss_pred HhhHHHHHHHcC-CHHHHHHHHhCCCCccccCccCccHHHH-HHc-CcHHHHHHHH-----HcCCCCCCCCCCCC-CHHH
Confidence 345556666777 77777776653322 2233333333333 344 7665544443 33433332 122 2344
Q ss_pred HHHhcCChhHHHHHHHhc
Q 037178 142 MYSLCGFPLDSRRVFDSL 159 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m 159 (311)
..++.|+.+-+..+++.-
T Consensus 76 ~A~~~~~~~~v~~Ll~~g 93 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQ 93 (162)
T ss_dssp HHHHHTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 445567777666666643
No 362
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.88 E-value=41 Score=19.91 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=16.4
Q ss_pred CCChhhHHHHHHHhhhcCCCCCCc
Q 037178 177 NELYTDVLSIFVELSSDTELKPDN 200 (311)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~p~~ 200 (311)
.-+++.|...|.+++....+.|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888888888887624455443
No 363
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.51 E-value=2e+02 Score=21.03 Aligned_cols=14 Identities=7% Similarity=-0.109 Sum_probs=8.1
Q ss_pred CChhHHHHHHHHHH
Q 037178 111 KDIEIGKRVHELVS 124 (311)
Q Consensus 111 ~~~~~a~~~~~~m~ 124 (311)
|++-++.++++..-
T Consensus 46 g~yfeaHEvLEe~W 59 (161)
T 2ijq_A 46 GEFHESHDCFEDEW 59 (161)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHH
Confidence 55555555555555
No 364
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.86 E-value=1.7e+02 Score=20.40 Aligned_cols=113 Identities=9% Similarity=-0.106 Sum_probs=53.9
Q ss_pred HHHHHHhcCChhHHHHHHHhcC----CCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcchH--HHHHHHHhc
Q 037178 139 LITMYSLCGFPLDSRRVFDSLK----TRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFTF--PCVIKACGG 212 (311)
Q Consensus 139 ll~~~~~~g~~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t~--~~li~~~~~ 212 (311)
.+...++.|+.+....+++.-. ..+..-++.+ ...+..|+.+-+..++ + .|..++.... .+.+...+.
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~-~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL-HFAAGYNRVSVVEYLL----Q-HGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHH-HHHHHTTCHHHHHHHH----H-TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHH-HHHHHcChHHHHHHHH----h-cCCCCCccCCCCCCHHHHHHH
Confidence 4455567788888887776432 1222223333 3345566654444333 3 4444443221 123333445
Q ss_pred cCChhhHHHHHHHHHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhC
Q 037178 213 IADVGFGSGVHGMAAKMGLIGDVFV--SNALIAMYGKCAFVEEMVKLFEVM 261 (311)
Q Consensus 213 ~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m 261 (311)
.|+.+ +.+.+.+.|..++... -.+.+..-++.|+.+-+..+++.-
T Consensus 85 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 131 (165)
T 3twr_A 85 YGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131 (165)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 55554 4444455665443211 112233335566666666665543
No 365
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.29 E-value=1.8e+02 Score=20.16 Aligned_cols=48 Identities=8% Similarity=-0.042 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCC-ChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCC
Q 037178 167 WNALVSGFTKNE-LYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIAD 215 (311)
Q Consensus 167 y~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 215 (311)
-..++..+...+ ..-.|.++++.+++ .+...+..|.---++.+...|-
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALME-AGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCc
Confidence 334455555554 55666666666665 4444444444444444444443
No 366
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.27 E-value=2.4e+02 Score=21.64 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHH---hCCChhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChh-----hHHHHHHHHHHhCCCC
Q 037178 168 NALVSGFT---KNELYTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVG-----FGSGVHGMAAKMGLIG 233 (311)
Q Consensus 168 ~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~-----~a~~~~~~m~~~g~~~ 233 (311)
--+|+++. +..+++.|+..+.+|.+ .|-.|.-..-..++-+.-..|.-+ .|...++....-|.+-
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~-~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVE-AGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 33555554 45789999999999998 888888888888888877666533 4555566666667544
No 367
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.24 E-value=1.9e+02 Score=23.71 Aligned_cols=63 Identities=6% Similarity=-0.113 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchh
Q 037178 66 FLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDF 133 (311)
Q Consensus 66 ~~~li~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 133 (311)
++.| ...+..| ..+-+.-+++.-.. ++...-.+.+...+..|+.+.+..+++... ..|..++.
T Consensus 54 ~t~L-~~A~~~g-~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~ 116 (364)
T 3ljn_A 54 CTAL-HLACKFG-CVDTAKYLASVGEV--HSLWHGQKPIHLAVMANKTDLVVALVEGAK-ERGQMPES 116 (364)
T ss_dssp CCHH-HHHHHHC-CHHHHHHHHHHCCC--CCCBTTBCHHHHHHHTTCHHHHHHHHHHHH-HHTCCHHH
T ss_pred CcHH-HHHHHcC-CHHHHHHHHHCCCC--ccccCCCCHHHHHHHcCCHHHHHHHHHhcc-ccCCCHHH
Confidence 4444 4445566 66665555554332 111111223344456677777777766655 44555443
No 368
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.06 E-value=2.1e+02 Score=20.91 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHhcCCC-----ChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCC
Q 037178 152 SRRVFDSLKTR-----NLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKP 198 (311)
Q Consensus 152 A~~l~~~m~~~-----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p 198 (311)
+..+|..|... -..-|......+-..|++.+|.++|+.-.+ .+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc
Confidence 44555555432 223455555555566666666666665555 44444
No 369
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.94 E-value=2.5e+02 Score=21.72 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 037178 241 LIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~ 262 (311)
.+-.|.+.|.+++|.+++++..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHhcchHHHHHHHHHHh
Confidence 3445666777777777776654
No 370
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.77 E-value=69 Score=22.10 Aligned_cols=41 Identities=5% Similarity=-0.192 Sum_probs=23.4
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 037178 187 FVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAK 228 (311)
Q Consensus 187 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 228 (311)
|+.+.. ..+.|+...-..-|..+...++++.|.+++..+..
T Consensus 49 fdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444 55555544444444455666677777777766654
No 371
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.76 E-value=2e+02 Score=20.49 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=9.3
Q ss_pred chHHHHHHHHhccCChhhHHH
Q 037178 201 FTFPCVIKACGGIADVGFGSG 221 (311)
Q Consensus 201 ~t~~~li~~~~~~g~~~~a~~ 221 (311)
.+|.-++..+.+...+-+...
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~ 177 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQ 177 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHH
Confidence 455555554444433333333
No 372
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.66 E-value=1.1e+02 Score=23.94 Aligned_cols=191 Identities=7% Similarity=-0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhcc--CCC-------ChhhHHHHHHhccc--CCChhHHHHHHHHH---------Hhh
Q 037178 67 LQEITTLCEESKSLNKALSLLQENLH--NAD-------LKEATGVLLQACGH--EKDIEIGKRVHELV---------SAS 126 (311)
Q Consensus 67 ~~li~~~~~~g~~~~~a~~~~~~m~~--~~~-------~~~~~~~ll~~~~~--~~~~~~a~~~~~~m---------~~~ 126 (311)
.+.+...++.| +.+.+..+++.... ... |..-++.+..++.. .|+.+-+..+++.- . .
T Consensus 14 ~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i-~ 91 (273)
T 2pnn_A 14 RRSIFDAVAQS-NCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV-N 91 (273)
T ss_dssp HHHHHHHHHTT-CSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH-T
T ss_pred chHHHHHHHcC-CHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh-h
Q ss_pred cCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHH----------------HHHHHHHHHhCCChhhHHHHHHH-
Q 037178 127 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQ----------------WNALVSGFTKNELYTDVLSIFVE- 189 (311)
Q Consensus 127 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~----------------y~~li~~~~~~g~~~~a~~~~~~- 189 (311)
.+.......-.+.+...+..|+.+-+..+++.-...+... -.+.+...+..|+.+-+..+++.
T Consensus 92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (273)
T 2pnn_A 92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171 (273)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Q ss_pred -hhhcCCCCCCcchHHHHHHHHhccCChhhH----HHHHHHHHHhCCCCc---------HHHHHHHHHHHHhcCCHHHHH
Q 037178 190 -LSSDTELKPDNFTFPCVIKACGGIADVGFG----SGVHGMAAKMGLIGD---------VFVSNALIAMYGKCAFVEEMV 255 (311)
Q Consensus 190 -m~~~~~~~p~~~t~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~~~---------~~~~~~li~~~~~~g~~~~A~ 255 (311)
... .--..|..-.+.|..++.......+- .++++.+.+.|..++ ...-.+-+..-++.|+.+-+.
T Consensus 172 ~~ga-d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 172 WQPA-DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCC-CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Q ss_pred HHHhh
Q 037178 256 KLFEV 260 (311)
Q Consensus 256 ~~~~~ 260 (311)
.+++.
T Consensus 251 ~Ll~~ 255 (273)
T 2pnn_A 251 YILQR 255 (273)
T ss_dssp HHHHH
T ss_pred HHHHC
No 373
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.46 E-value=95 Score=23.22 Aligned_cols=171 Identities=9% Similarity=-0.061 Sum_probs=85.0
Q ss_pred HHHHHhcCCCHHHHHHHHHhhcc--CCCChhhHHHHHHhcccCCChhHHHHHHHHHHhhcC--CCch----hhHHHHHHH
Q 037178 70 ITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELVSASTQ--FSND----FIINTRLIT 141 (311)
Q Consensus 70 i~~~~~~g~~~~~a~~~~~~m~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~----~~~~~~ll~ 141 (311)
+...++.| +.+.+..+++.-.. ...|..-.+. +...+..|+.+.+..+ . +.| ..++ ..-+ +.+.
T Consensus 6 L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l-~~~~~~~~~~~~~~~g~-t~L~ 77 (228)
T 2dzn_A 6 LHQACMEN-EFFKVQELLHSKPSLLLQKDQDGRIP-LHWSVSFQAHEITSFL----L-SKMENVNLDDYPDDSGW-TPFH 77 (228)
T ss_dssp HHHHHHTT-CHHHHHHHHHHCGGGTTCCCTTSCCH-HHHHHHTTCHHHHHHH----H-HTCTTCCGGGCCCTTSC-CHHH
T ss_pred HHHHHHhC-CHHHHHHHHhcCccccccCCCCCCCH-HHHHHHcCCHHHHHHH----H-hccccccccccCCCCCC-CHHH
Confidence 45556778 88888888876554 2234333333 3334456666554444 4 344 2222 1222 3455
Q ss_pred HHHhcCChhHHHHHHHhc--CC---CChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch--HHHHHHHHhccC
Q 037178 142 MYSLCGFPLDSRRVFDSL--KT---RNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT--FPCVIKACGGIA 214 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m--~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t--~~~li~~~~~~g 214 (311)
..+..|+.+-+..+++.- .. .+..-++.+. ..+..|+.+-+..+++ .|..++... -.+.+...+..|
T Consensus 78 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~ 151 (228)
T 2dzn_A 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH-LAVGKKWFEVSQFLIE-----NGASVRIKDKFNQIPLHRAASVG 151 (228)
T ss_dssp HHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHH-HHHHcCCHhHHHHHHH-----cCCCccccCCCCCCHHHHHHHcC
Confidence 556778888888887764 21 2222233333 3346666655544443 344443321 112344445556
Q ss_pred ChhhHHHHHHHHHHhC-CCCcH--HHHHHHHHHHHhcCCHHHHHHHH
Q 037178 215 DVGFGSGVHGMAAKMG-LIGDV--FVSNALIAMYGKCAFVEEMVKLF 258 (311)
Q Consensus 215 ~~~~a~~~~~~m~~~g-~~~~~--~~~~~li~~~~~~g~~~~A~~~~ 258 (311)
+.+ +++.+.+.| ..++. ..-.+.+..-++.|+.+-+..++
T Consensus 152 ~~~----~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 152 SLK----LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp CHH----HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CHH----HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 654 444455555 33321 11122333445667777666666
No 374
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.80 E-value=2.2e+02 Score=21.33 Aligned_cols=177 Identities=7% Similarity=-0.073 Sum_probs=86.5
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCchhh--HHHHHHHHHHhcCChhHHHHHHHhcCC---CChHHHHHHHHHHHhCC
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSNDFI--INTRLITMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNE 178 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g 178 (311)
+...+..|+.+.+. .+. +.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++. +...+..|
T Consensus 15 L~~A~~~g~~~~v~----~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~ 88 (237)
T 3b7b_A 15 LHAAAEAGHVDICH----MLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKG 88 (237)
T ss_dssp HHHHHHHTCHHHHH----HHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHcCcHHHHH----HHH-HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcC
Confidence 44445667765444 444 445444321 112345566778888888888776432 23222333 33345667
Q ss_pred ChhhHHHHHHHhhhcCCCCCC---cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhcCCHHH
Q 037178 179 LYTDVLSIFVELSSDTELKPD---NFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVF--VSNALIAMYGKCAFVEE 253 (311)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~ 253 (311)
+.+-+..+++.-. ..++ ..-.+ .+...+..|+.+ +++.+.+.|..++.. .-.+.+..-++.|+.+-
T Consensus 89 ~~~~~~~Ll~~~~----~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 89 HYEVVQYLLSNGQ----MDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp CHHHHHHHHTTTC----CCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred CHHHHHHHHhCCC----CCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 7655554443321 2222 22222 333444556654 455555666554321 11223344456788887
Q ss_pred HHHHHhhCCCCCh---hhHHHHHHHHHhCCCcchHHHHHHhhhhccCCCCCC
Q 037178 254 MVKLFEVMPERNL---VSWNSIICGFSENGFSCESFDLLIKMMGCEEGFIPD 302 (311)
Q Consensus 254 A~~~~~~m~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m~~~~~g~~P~ 302 (311)
+..+++.-.+++. .-.+ .+...++.|+.+-+ +.+ .+.|..++
T Consensus 160 ~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~L--l~~gad~~ 204 (237)
T 3b7b_A 160 AEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCV----VLF--LSRDSDVT 204 (237)
T ss_dssp HHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHH--HTTTCCTT
T ss_pred HHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHH----HHH--HHcCCCCC
Confidence 7777766554332 2222 33344556665443 333 34455554
No 375
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.75 E-value=1.7e+02 Score=19.18 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 222 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
+++.+.+.|+ .+..-+..+-. ..-..++|.++++.+..++..+|..++.++.. .....+.++..
T Consensus 26 lld~L~~~~V-Lt~~~~e~I~~---~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~ 89 (100)
T 3crd_A 26 VLQYLYQEGI-LTENHIQEINA---QTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKA 89 (100)
T ss_dssp SHHHHHHHTS-SCHHHHHHHTT---CSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHc---CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhh
Confidence 4555666663 33333333332 45678899999999999999999999999865 34444445554
No 376
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.11 E-value=3.1e+02 Score=22.01 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=6.5
Q ss_pred HhcCCHHHHHHHHh
Q 037178 246 GKCAFVEEMVKLFE 259 (311)
Q Consensus 246 ~~~g~~~~A~~~~~ 259 (311)
++.|..+.+..+++
T Consensus 247 ~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 247 VEKKHLGLVQRLLE 260 (337)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhhhhHHHHHHHH
Confidence 34455554444443
No 377
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.78 E-value=1.7e+02 Score=20.06 Aligned_cols=41 Identities=12% Similarity=-0.155 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037178 222 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 262 (311)
Q Consensus 222 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (311)
+|+.+....+.+++...-.-+......++++.|.++...+.
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55566666676665544445555678899999999987755
No 378
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.68 E-value=1.7e+02 Score=20.87 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=6.4
Q ss_pred ChhhHHHHHHHhhh
Q 037178 179 LYTDVLSIFVELSS 192 (311)
Q Consensus 179 ~~~~a~~~~~~m~~ 192 (311)
..-.|.++++.+.+
T Consensus 32 ~h~sa~ei~~~l~~ 45 (150)
T 2w57_A 32 QHISAEELYKKLID 45 (150)
T ss_dssp SSEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 34444444444444
No 379
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.62 E-value=1.4e+02 Score=18.01 Aligned_cols=45 Identities=2% Similarity=-0.265 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 037178 203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 248 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 248 (311)
++-+++..++..-++++.-.+++..+.| ..+..+|-.-+..+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4556666777777778888888888877 55666666666665553
No 380
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=21.57 E-value=2.2e+02 Score=23.10 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=53.2
Q ss_pred HHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHHH----HHhcCCHHHHHHHHh
Q 037178 185 SIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIAM----YGKCAFVEEMVKLFE 259 (311)
Q Consensus 185 ~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~ 259 (311)
+++..+.+ .|+.|..+++.-++..+.+.=.++.+.++++.+...|...-..+.-+++.. ..+ .+++++.+.+.
T Consensus 175 ~L~~hL~~-~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSD-LNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHH-HTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 45566666 789999999999999999888899999999999999854322222233322 223 47888888885
No 381
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.25 E-value=73 Score=25.64 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhcCCC
Q 037178 134 IINTRLITMYSLCGFPLDSRRVFDSLKTR 162 (311)
Q Consensus 134 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 162 (311)
..-|.|++.|..+|+++.|.++|++++..
T Consensus 35 ~~~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 35 KQGNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 34588999999999999999999998753
No 382
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.97 E-value=2.7e+02 Score=20.91 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=67.4
Q ss_pred HHHhcCChhHHHHHHHhcCCCChHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCC-cchHHHHHHHHhccCChhhHH
Q 037178 142 MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPD-NFTFPCVIKACGGIADVGFGS 220 (311)
Q Consensus 142 ~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~a~ 220 (311)
+|-+..++..|...++.+.+.++. +.-+++.- ++.|-- + +-| +..|+-+...|...|+.++|.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd----------~d~~~d~~---~~~ffv--d-~~DkEfFy~l~a~lltq~g~r~EaI 134 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVE----------RDPDVDAR---IQEMFV--D-PGDEEFFESLLGDLCTLSGYREEGI 134 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSB----------CCCCCCHH---HHTTSC--C-TTCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----------cCcccccc---cceeee--c-cchHHHHHHHHHHHHHHhcCHHHhh
Confidence 566779999999988876532110 00011111 133321 1 223 456777777888899999998
Q ss_pred HHHHHHHHhCC--------------CCcHHHHHHHHHHHHhcC----CHHHHHHHHhhCC--------C--CChhhHHH-
Q 037178 221 GVHGMAAKMGL--------------IGDVFVSNALIAMYGKCA----FVEEMVKLFEVMP--------E--RNLVSWNS- 271 (311)
Q Consensus 221 ~~~~~m~~~g~--------------~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~--------~--~~~~~y~~- 271 (311)
..+..--...+ +-....-+.++.+ +.| .+.....+.+.+. + |..-+|-.
T Consensus 135 ~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~--~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va 212 (242)
T 3kae_A 135 GHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTG--RRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFIS 212 (242)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHH
T ss_pred hHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhh--hccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHH
Confidence 87765433321 1111111111110 111 1112222222111 1 66655533
Q ss_pred -HHHHHHhCCCcchHHHHHHhh
Q 037178 272 -IICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 272 -li~~~~~~g~~~~a~~l~~~m 292 (311)
....|...|..|+...+|...
T Consensus 213 ~aa~~yf~lg~~d~s~~lf~~l 234 (242)
T 3kae_A 213 NAARRYFNLGMNDKSKACFELV 234 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHH
Confidence 355678899999999999887
No 383
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.96 E-value=1.5e+02 Score=23.49 Aligned_cols=223 Identities=8% Similarity=-0.114 Sum_probs=0.0
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHh----------hcc-CCCChhhHHHHHHhcccCCChhHHHHHHHHHH
Q 037178 56 TNNASTQGLHFLQEITTLCEESKSLNKALSLLQE----------NLH-NADLKEATGVLLQACGHEKDIEIGKRVHELVS 124 (311)
Q Consensus 56 ~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~----------m~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 124 (311)
.+-.+.......+.+...+..| +.++..++... ... .......-.+.+...+..|+.+.+..+++.
T Consensus 5 ~~~~~~~~~~~~~~lH~Aa~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-- 81 (285)
T 3d9h_A 5 HHHHHHSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-- 81 (285)
T ss_dssp --------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred cccccccchHHHHHHHHHhhcC-CCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--
Q ss_pred hhcCCCchhhHHHHHHHHHHhcCChhHHHHHHHhcCCCChHHHH--HHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch
Q 037178 125 ASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWN--ALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT 202 (311)
Q Consensus 125 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t 202 (311)
...+........+.+...+..|+.+-+..+++.-...+..... +.+...+..|+.+-+..+++.-.. .....+
T Consensus 82 -g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~--- 156 (285)
T 3d9h_A 82 -GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESD--- 156 (285)
T ss_dssp -TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCSCT---
T ss_pred -CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCCCCC---
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHhhCCCCCh-hhHHHHHHHHHhC
Q 037178 203 FPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSN--ALIAMYGKCAFVEEMVKLFEVMPERNL-VSWNSIICGFSEN 279 (311)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~-~~y~~li~~~~~~ 279 (311)
-.+.+...+..|+.+ +++.+.+.|..++..... +.+..-++.|+.+-+..+++.-..++. ..-.+.+...++.
T Consensus 157 g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~ 232 (285)
T 3d9h_A 157 LASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRT 232 (285)
T ss_dssp TSCHHHHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHc
Q ss_pred CCcchHHHHHH
Q 037178 280 GFSCESFDLLI 290 (311)
Q Consensus 280 g~~~~a~~l~~ 290 (311)
|+.+-+..+++
T Consensus 233 ~~~~~v~~Ll~ 243 (285)
T 3d9h_A 233 ASEELACLLMD 243 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
No 384
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.95 E-value=3e+02 Score=21.39 Aligned_cols=185 Identities=9% Similarity=-0.104 Sum_probs=103.1
Q ss_pred CChhhHHHHHHhcccCCChhHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhcCChh----HHHHHHHh--cCCCChHHHH
Q 037178 95 DLKEATGVLLQACGHEKDIEIGKRVHELVSASTQFSNDFIINTRLITMYSLCGFPL----DSRRVFDS--LKTRNLFQWN 168 (311)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~ll~~~~~~g~~~----~A~~l~~~--m~~~~~~~y~ 168 (311)
+|...-...+.++++.|..+ +...+..+. . .++..+-...+.++.+.|... ....++.. ..+++...-.
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l-~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQD-AVRLAIEFC-S---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHH-HHHHHHHHH-T---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred CCHHHHHHHHHHHHccCCch-HHHHHHHHH-c---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Confidence 45555455555555555433 333333333 2 345555556667777776432 23334432 2356666666
Q ss_pred HHHHHHHhCCC-----hhhHHHHHHHhhhcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCcHHHHHHHHH
Q 037178 169 ALVSGFTKNEL-----YTDVLSIFVELSSDTELKPDNFTFPCVIKACGGIADVGFGSGVHGMAAKMGLIGDVFVSNALIA 243 (311)
Q Consensus 169 ~li~~~~~~g~-----~~~a~~~~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 243 (311)
..+.++.+.|. ...+...+..... .++..+-...+.++...|+.+ +...+..+.+ .++..+-...+.
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 66666666542 3345555555443 367777777888888887744 4444444443 346666666777
Q ss_pred HHHhcC--CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCcchHHHHHHhh
Q 037178 244 MYGKCA--FVEEMVKLFEVMPERNLVSWNSIICGFSENGFSCESFDLLIKM 292 (311)
Q Consensus 244 ~~~~~g--~~~~A~~~~~~m~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 292 (311)
++.+.| ..+-...+.+.+.++|..+-...+.++.+.|.......+.+.+
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l 232 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHh
Confidence 777765 4443444455555677777777888888888655544454444
No 385
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.88 E-value=2.5e+02 Score=20.49 Aligned_cols=91 Identities=11% Similarity=-0.005 Sum_probs=50.9
Q ss_pred HHhcCChhHHHHHHHhcCCC-C-hHHHHHHHHHHHhCCChhhHHHHHHHhhhcCCCCCCcch---HHHHHHHHhc-cCCh
Q 037178 143 YSLCGFPLDSRRVFDSLKTR-N-LFQWNALVSGFTKNELYTDVLSIFVELSSDTELKPDNFT---FPCVIKACGG-IADV 216 (311)
Q Consensus 143 ~~~~g~~~~A~~l~~~m~~~-~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~t---~~~li~~~~~-~g~~ 216 (311)
.++.|+++....+++.-... + ..-+ +.+...+..|..+.-.++.+-+.+ .|..++... .+.|..++.. ..+.
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 35668888777777653321 1 1122 344455666776665666666666 777776532 2233333222 2234
Q ss_pred hhHHHHHHHHHHhCCCCcH
Q 037178 217 GFGSGVHGMAAKMGLIGDV 235 (311)
Q Consensus 217 ~~a~~~~~~m~~~g~~~~~ 235 (311)
....++.+.+.+.|..++.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSS
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 4456777888888876643
No 386
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.73 E-value=2.2e+02 Score=19.79 Aligned_cols=116 Identities=7% Similarity=-0.057 Sum_probs=51.0
Q ss_pred HHhcccCCChhHHHHHHHHHHhhcCCCchhhH--HHHHHHHHHhcCChhHHHHHHHhcCCC---ChHHHHHHHHHHHhCC
Q 037178 104 LQACGHEKDIEIGKRVHELVSASTQFSNDFII--NTRLITMYSLCGFPLDSRRVFDSLKTR---NLFQWNALVSGFTKNE 178 (311)
Q Consensus 104 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g 178 (311)
+...++.|+.+.+..+++. .+..++... ..+.+...+..|+.+-+..+++.-... |..-++.+.. .+..|
T Consensus 12 l~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~ 86 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV----QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN-ACSYG 86 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT----TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHHHhCCHHHHHHHHHc----CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHcC
Confidence 3344556666665555432 221111111 113445556677777777676653332 2222233333 34556
Q ss_pred ChhhHHHHHHHhhhcCCCCCCcchH--HHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 037178 179 LYTDVLSIFVELSSDTELKPDNFTF--PCVIKACGGIADVGFGSGVHGMAAKMGLIG 233 (311)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 233 (311)
+.+-+..++ + .|..++.... .+.+...+..|+.+ +.+.+.+.|..+
T Consensus 87 ~~~~v~~Ll----~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~ 134 (165)
T 3twr_A 87 HYEVAELLV----K-HGAVVNVADLWKFTPLHEAAAKGKYE----ICKLLLQHGADP 134 (165)
T ss_dssp CHHHHHHHH----H-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred cHHHHHHHH----h-CCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCC
Confidence 655443333 3 4444433211 12333344445543 334444555544
No 387
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.73 E-value=1.4e+02 Score=23.02 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=45.7
Q ss_pred HHHhCCChhhHHHHHHHhhhcCCCCCCcc-------hHHHHHHHHh--ccCChhhHHHHHHHHHHhC---------CC-C
Q 037178 173 GFTKNELYTDVLSIFVELSSDTELKPDNF-------TFPCVIKACG--GIADVGFGSGVHGMAAKMG---------LI-G 233 (311)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------t~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~-~ 233 (311)
..++.|+.+....+++.+.. .|..++.. -.+.|..|.. +.|..+-+..+++.-.+.+ +. .
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLT-HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHhCCHHHHHHHHHHHHh-cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 34566777777777776555 55555432 2234444432 5677766666665433211 00 0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037178 234 DVFVSNALIAMYGKCAFVEEMVKLFEVMPER 264 (311)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (311)
|..-.+. +..-+..|+.+-+..+++.-.++
T Consensus 90 d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~ 119 (260)
T 3jxi_A 90 YYRGQTA-LHIAIERRCKHYVELLVEKGADV 119 (260)
T ss_dssp SEESBCH-HHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ccCCCCH-HHHHHHcCCHHHHHHHHhCCCCc
Confidence 0011222 33335568877777777654443
No 388
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.68 E-value=92 Score=22.86 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHhhh
Q 037178 166 QWNALVSGFTKNELYTDVLSIFVELSS 192 (311)
Q Consensus 166 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 192 (311)
....+|.-|...|+.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356788999999999999999999864
Done!