BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037179
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINH 168
++C C K+F+R ++L H H G +P Y C E
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTH-----------TGEKP--------YKCPEC------- 55
Query: 169 PKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK--NCGKRWLC-VCGS 225
K D + L H + G KP+ C +CGK + + + R H++ K + C CG
Sbjct: 56 --GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113
Query: 226 DFKHKRSLKDHIKAFGSGHGPFSRPFDG 253
F L+ H + +G P+ P G
Sbjct: 114 SFSQLAHLRAHQRTH-TGEKPYKCPECG 140
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 21/152 (13%)
Query: 100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGH-GSQYRKGPESLKGTQPRAIL------- 151
++ G + C C K+F+ +L H H G + K PE K RA L
Sbjct: 41 QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Query: 152 -GIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRT 210
G Y C E K L+ H + G KP+ C +CGK + + + T
Sbjct: 101 TGEKPYACPEC---------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT 151
Query: 211 HEK--NCGKRWLC-VCGSDFKHKRSLKDHIKA 239
H++ K + C CG F + +L H +
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 189 GLKPFMCRKCGKFLAVKGDWRTHEK--NCGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG 245
G KP+ C +CGK + H++ K + C CG F K+ L H + +G
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEK 76
Query: 246 PFSRPFDG 253
P+ P G
Sbjct: 77 PYKCPECG 84
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHE-KNCGKR----WLC-VCGSDFKHKRSL 233
L+ H ++ G KPF C KCGK K + HE +NC R + C VC F+ + L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 234 KDHIKAFGSGHGPF 247
+ H+ + +G P+
Sbjct: 83 RLHMVSH-TGEMPY 95
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGH 131
F+C VC +TF R L++HM H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSH 89
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 171 AKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDW----RTHEKNCGKRWLC-VCGS 225
K +D L H G KP+ C CG K R+H+ + GK ++C CG
Sbjct: 14 GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73
Query: 226 DFKHKRSLKDHIKAFGSG 243
F L HIK SG
Sbjct: 74 GFSRPDHLNGHIKQVHSG 91
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 108 HFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPES 141
HF C C K F R + L MH H + GP S
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK--NCGKRWLC-VCGSDFKHKRSLKDH 236
LQ H + G KP+ C +CGK + D + H++ K + C CG F S DH
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSF----SRSDH 75
Query: 237 I 237
+
Sbjct: 76 L 76
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 28/106 (26%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINH 168
+ C C K+F++ +NLQ H H G +P Y C E
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHT-----------GEKP--------YKCPEC------- 38
Query: 169 PKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN 214
K LQ H + G KP+ C +CGK + H++
Sbjct: 39 --GKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 189 GLKPFMCRKCGKFLAVKGDWRTHEK 213
G KP+ C++CGK + +G HE+
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHER 31
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 190 LKPFMCRKCGKFLAVKGDWRTHE 212
+KP+MC +CGK +V TH+
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQ 32
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 171 AKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHE--KNCGKRWLCV---CGS 225
K +D ++ H HG + +C +CGK + H+ K + C CG
Sbjct: 14 TKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 226 DFKHKRSLKDHIKAFGSGHGPFSRPFDG 253
F +L+ H++ +G P+ PFDG
Sbjct: 73 RFSLDFNLRTHVR-IHTGDRPYVCPFDG 99
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPES 141
+ C C K +NR NL MH H + GP S
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 189 GLKPFMCRKCGKFLAVKGDWRTHEK 213
G KP++C +CGK +K HE+
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHER 31
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 189 GLKPFMCRKCGKFLAVKGDWRTHEK 213
G KP++C +CGK K + THE+
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHER 31
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPES 141
F C C K FN +NL +H H + GP S
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 192 PFMCRKCGKFLAVKGDWRTHEKNC 215
P++C +CGK +G H+++C
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSC 34
>pdb|1DLA|A Chain A, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|B Chain B, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|C Chain C, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|D Chain D, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
Length = 314
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 14 FAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALH--IGLP 71
+S+ NH+Q+E + P + Y E P L Q + + + V + +G P
Sbjct: 155 IGVSNFNHLQVEKILNKPGLKYKPAVNQIEVHPYLTQEKLIEYCKSKGIVVTAYSPLGSP 214
Query: 72 NYSHSS-NNPSAKGNANVAAAKQYWIPTPEQILIGF 106
+ + +PS + + A + T Q+LI F
Sbjct: 215 DRPWAKPEDPSLLEDPRIKAIAAKYNKTTAQVLIRF 250
>pdb|1EKO|A Chain A, Pig Aldose Reductase Complexed With Idd384 Inhibitor
pdb|1AH3|A Chain A, Aldose Reductase Complexed With Tolrestat Inhibitor
pdb|1AH4|A Chain A, Pig Aldose Reductase, Holo Form
Length = 315
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 14 FAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALH--IGLP 71
+S+ NH+Q+E + P + Y E P L Q + + + V + +G P
Sbjct: 156 IGVSNFNHLQVEKILNKPGLKYKPAVNQIEVHPYLTQEKLIEYCKSKGIVVTAYSPLGSP 215
Query: 72 NYSHSS-NNPSAKGNANVAAAKQYWIPTPEQILIGF 106
+ + +PS + + A + T Q+LI F
Sbjct: 216 DRPWAKPEDPSLLEDPRIKAIAAKYNKTTAQVLIRF 251
>pdb|1AH0|A Chain A, Pig Aldose Reductase Complexed With Sorbinil
Length = 316
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 14 FAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALH--IGLP 71
+S+ NH+Q+E + P + Y E P L Q + + + V + +G P
Sbjct: 157 IGVSNFNHLQVEKILNKPGLKYKPAVNQIEVHPYLTQEKLIEYCKSKGIVVTAYSPLGSP 216
Query: 72 NYSHSS-NNPSAKGNANVAAAKQYWIPTPEQILIGF 106
+ + +PS + + A + T Q+LI F
Sbjct: 217 DRPWAKPEDPSLLEDPRIKAIAAKYNKTTAQVLIRF 252
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 108 HFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPES 141
H+ C C K F R + L MH H + GP S
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPES 141
+ C+ C K F +NL H H + R GP S
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSS 45
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 191 KPFMCRKCGKFLAVKGDWRTHEK 213
KPF C CGK KG+ TH++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQR 33
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 172 KPLKDFRTLQTHYKRKHGLK----PFMCRKCGKFLAVKGDWRTHEKNC 215
K + + L H+KR H F+C KCGK + H NC
Sbjct: 23 KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWL 220
+ + +++ LK + C CG+ LA+ GD H+ N WL
Sbjct: 238 KVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHD-NLKSLWL 279
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 174 LKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWL 220
L + + + +++ LK + C CG+ LA+ GD H+ N WL
Sbjct: 249 LGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHD-NLKSLWL 294
>pdb|2IPW|A Chain A, Crystal Structure Of C298a W219y Aldose Reductase
Complexed With Dichlorophenylacetic Acid
pdb|2ISF|A Chain A, Crystal Structure Of C298a W219y Aldose Reductase
Complexed With Phenylacetic Acid
pdb|1AZ1|A Chain A, Alrestatin Bound To C298aW219Y MUTANT HUMAN ALDOSE
Reductase
pdb|1AZ2|A Chain A, Citrate Bound, C298aW219Y MUTANT HUMAN ALDOSE REDUCTASE
Length = 315
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 14 FAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALH--IGLP 71
IS+ NH+Q+E + P + Y E P L Q + + + + V + +G P
Sbjct: 156 IGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSP 215
Query: 72 NYSHSS-NNPSAKGNANVAAAKQYWIPTPEQILIGF 106
+ ++ +PS + + A T Q+LI F
Sbjct: 216 DRPYAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRF 251
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK 213
L TH + G KPF C CG+ A + + H K
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|3KT7|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 204 VKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGP-FSRPFDGVEVLDDAS 261
VK W+T R+L + G ++++ ++ D ++A + P F D ++++ DAS
Sbjct: 380 VKAPWKTAIPPHKARYLYIDGKEYRNFQTEADILEALNNNDLPNFQFTKDAIKIISDAS 438
>pdb|3KT4|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 204 VKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGP-FSRPFDGVEVLDDAS 261
VK W+T R+L + G ++++ ++ D ++A + P F D ++++ DAS
Sbjct: 380 VKAPWKTAIPPHKARYLYIDGKEYRNFQTEADILEALNNNDLPNFQFTKDAIKIISDAS 438
>pdb|3MGU|A Chain A, Saccharomyces Cerevisiae Tpa1
Length = 644
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 204 VKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGP-FSRPFDGVEVLDDAS 261
VK W+T R+L + G ++++ ++ D ++A + P F D ++++ DAS
Sbjct: 399 VKAPWKTAIPPHKARYLYIDGKEYRNFQTEADILEALNNNDLPNFQFTKDAIKIISDAS 457
>pdb|3KT1|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 204 VKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGP-FSRPFDGVEVLDDAS 261
VK W+T R+L + G ++++ ++ D ++A + P F D ++++ DAS
Sbjct: 380 VKAPWKTAIPPHKARYLYIDGKEYRNFQTEADILEALNNNDLPNFQFTKDAIKIISDAS 438
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN 214
L+ H +R G+KPF C+ C + + +TH +
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPES 141
+ C VC K F++ ++LQ H H + GP S
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK 213
L TH + G KPF C CG+ A + + H K
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK 213
L TH + G KPF C CG+ A + + H K
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,767,673
Number of Sequences: 62578
Number of extensions: 370959
Number of successful extensions: 986
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 175
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)