BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037180
KPNIFMDKSEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIF
LCLSSI

High Scoring Gene Products

Symbol, full name Information P value
iap
Protein P60 		protein from Listeria monocytogenes serotype 4b str. F2365 0.00031

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037180
        (66 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q722W8 - symbol:iap "Protein P60" species:26566...    98  0.00031   1


>UNIPROTKB|Q722W8 [details] [associations]
            symbol:iap "Protein P60" species:265669 "Listeria
            monocytogenes serotype 4b str. F2365" [GO:0003674
            "molecular_function" evidence=ND] InterPro:IPR002482
            InterPro:IPR018392 Pfam:PF01476 SMART:SM00257 Pfam:PF00877
            EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0016998
            eggNOG:COG0791 InterPro:IPR000064 InterPro:IPR003646 Pfam:PF08239
            SMART:SM00287 RefSeq:YP_013216.1 ProteinModelPortal:Q722W8
            GeneID:2797439 KEGG:lmf:LMOf2365_0611 PATRIC:20322425
            HOGENOM:HOG000244932 OMA:TIWALSV ProtClustDB:PRK13914
            Uniprot:Q722W8
        Length = 477

 Score = 98 (39.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query:    11 PEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
             P  AS   V +  GDTLWG +   G ++DAIK+AN L+ D I
Sbjct:    22 PTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKI 63


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.138   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        54   0.00091  102 3  11 22  0.49    27
                                                     29  0.38    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  481 (51 KB)
  Total size of DFA:  83 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.72u 0.13s 6.85t   Elapsed:  00:00:00
  Total cpu time:  6.72u 0.13s 6.85t   Elapsed:  00:00:00
  Start:  Sat May 11 02:35:15 2013   End:  Sat May 11 02:35:15 2013

Back to top