BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037180
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37710|ALYS_ENTFA Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=EF_0799 PE=3 SV=2
Length = 737
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 7 DKSEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
+ S AS + + GD+LWG SM+ G+SI IK+ NGLSGDTIY
Sbjct: 683 NASSTNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDTIY 729
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 21 ILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
I GDTL + + GVS+ ++ NG+SGD I+
Sbjct: 501 IKSGDTLNKIAAQYGVSVANLRSWNGISGDLIF 533
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDTL + + GVS+ ++ NG+SGD I+
Sbjct: 368 GDTLNKIAAQYGVSVANLRSWNGISGDLIF 397
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDTL + + GVS+ ++ NG+SGD I+
Sbjct: 436 GDTLNKIAAQYGVSVANLRSWNGISGDLIF 465
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 21 ILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
I GDTL S + GVS+ ++ NG+ GD I+
Sbjct: 635 IKSGDTLNKISAQFGVSVANLRSWNGIKGDLIF 667
>sp|P21171|P60_LISMO Probable endopeptidase p60 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=iap PE=1 SV=2
Length = 484
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
+ P AS V + GDTLWG + G ++DAIK+AN L+ D I
Sbjct: 20 AAPTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKI 63
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDT+W S+K GVS+ I N LS +IY
Sbjct: 208 GDTIWALSVKYGVSVQDIMSWNNLSSSSIY 237
>sp|Q01836|P60_LISIN Probable endopeptidase p60 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=iap PE=3 SV=2
Length = 467
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
+ P AS V + GDTLWG + G ++DAIK+AN L+ D I
Sbjct: 20 AAPTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKI 63
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDT+W S+K GVS+ I N LS +IY
Sbjct: 206 GDTIWALSVKYGVSVQDIMSWNNLSSSSIY 235
>sp|Q01839|P60_LISWE Probable endopeptidase p60 OS=Listeria welshimeri GN=iap PE=3
SV=1
Length = 524
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
+ P AS V + GDTLWG + G ++DA+K+AN L+ D I
Sbjct: 20 AAPTIASASTVVVEAGDTLWGIAQSKGTTVDALKKANNLTSDKI 63
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDT+W S+K G S+ + N LS +IY
Sbjct: 203 GDTIWALSVKYGASVQDLMSWNNLSSSSIY 232
>sp|Q01837|P60_LISIV Probable endopeptidase p60 OS=Listeria ivanovii GN=iap PE=3 SV=1
Length = 524
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
+ P AS V + GDTLWG + G ++DA+K+AN L+ D I
Sbjct: 20 AAPTIASASTVVVEAGDTLWGIAQDKGTTVDALKKANNLTSDKI 63
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDT+W S K G S+ I N LS +IY
Sbjct: 203 GDTIWALSSKYGTSVQNIMSWNNLSSSSIY 232
>sp|P0C2T5|ACMA_LACLC Probable N-acetylmuramidase OS=Lactococcus lactis subsp. cremoris
GN=acmA PE=3 SV=1
Length = 437
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 12 EPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
+PAS V++ GDTLW S+K SI +K N LS DTIY
Sbjct: 314 KPASQTSVKVKSGDTLWALSVKYKTSIAQLKSWNHLSSDTIY 355
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 18 IVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
I ++++GDTLWG S K G I +IK N LS DTI
Sbjct: 394 IHKVVKGDTLWGLSQKSGSPIASIKAWNHLSSDTI 428
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDTLWG S + G+S+ I+ AN L IY
Sbjct: 250 GDTLWGISQRYGISVAQIQSANNLKSTIIY 279
>sp|Q01838|P60_LISSE Probable endopeptidase p60 OS=Listeria seeligeri GN=iap PE=3 SV=1
Length = 523
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
+ P AS V + GDTLWG + G ++DA+K+AN L+ D I
Sbjct: 20 AAPTIASASTVVVEAGDTLWGIAQDNGTTVDALKKANKLTTDKI 63
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDT+W S+K G S+ + N LS +IY
Sbjct: 205 GDTIWALSVKYGASVQDLMSWNNLSSSSIY 234
>sp|A2RHZ5|ACMA_LACLM Probable N-acetylmuramidase OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=acmA PE=3 SV=1
Length = 437
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 12 EPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
+P S V++ GDTLW S+K SI +K N LS DTIY
Sbjct: 314 KPTSQTTVKVKSGDTLWALSVKYKTSIAQLKSWNHLSSDTIY 355
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 18 IVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
I ++++GDTLWG S K G I +IK N LS DTI
Sbjct: 394 IHKVVKGDTLWGLSQKSGSPIASIKAWNHLSSDTI 428
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDTLWG S + G+S+ I+ AN L IY
Sbjct: 250 GDTLWGISQRYGISVAQIQSANNLKSTIIY 279
>sp|Q9CIT4|ACMA_LACLA Probable N-acetylmuramidase OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=acmA PE=3 SV=1
Length = 439
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 18 IVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
I ++++GDTLWG S K G I +IK N LS DTI
Sbjct: 396 IHKVVKGDTLWGLSQKSGSPIASIKAWNHLSSDTI 430
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 EPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
+PAS +++ GDTLWG S+K +I +K N L+ DTI+
Sbjct: 316 KPASQTTIKVKSGDTLWGLSVKYKTTIAQLKSWNHLNSDTIF 357
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GDTLWG S K G+S+ I+ AN L IY
Sbjct: 248 GDTLWGISQKYGISVAQIQSANNLKSTVIY 277
>sp|O34669|YOCH_BACSU Cell wall-binding protein YocH OS=Bacillus subtilis (strain 168)
GN=yocH PE=1 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 14 ASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
AS + + + +GDTLWG S K GV++ +KE N L+ D I
Sbjct: 23 ASAKEITVQKGDTLWGISQKNGVNLKDLKEWNKLTSDKI 61
>sp|Q01835|P60_LISGR Probable endopeptidase p60 OS=Listeria grayi GN=iap PE=3 SV=1
Length = 511
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
+ P S V + GDTLWG + K G ++D +K+ N L D I
Sbjct: 20 AAPSVVSANTVVVASGDTLWGIASKTGTTVDQLKQLNKLDSDRI 63
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 20 EILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
++ GDT+W S+K GV + + E N LS +IY
Sbjct: 178 KVKSGDTIWALSVKYGVPVQKLIEWNNLSSSSIY 211
>sp|P54421|LYTE_BACSU Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis
(strain 168) GN=lytE PE=1 SV=1
Length = 334
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 14 ASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
AS + +++ +GDTLW S K +I IK N L D IY
Sbjct: 23 ASAQSIKVKKGDTLWDLSRKYDTTISKIKSENHLRSDIIY 62
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 20 EILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
++ GD+LW S K G++I+ +K+ NGL D +
Sbjct: 89 KVKSGDSLWKISKKYGMTINELKKLNGLKSDLL 121
>sp|O31852|CWLS_BACSU D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS
OS=Bacillus subtilis (strain 168) GN=cwlS PE=1 SV=1
Length = 414
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 9 SEPEPASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTI 52
S P+ ++ GD+LW + + GV++ +I++ N LS D +
Sbjct: 217 SNSNPSKTTTYKVKAGDSLWKIANRLGVTVQSIRDKNNLSSDVL 260
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 13 PASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
PA + +++ GD+LW S + +I A+K N L +Y
Sbjct: 23 PAEAKTIKVKSGDSLWKLSRQYDTTISALKSENKLKSTVLY 63
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GD+LW + +++ +K NGL+ DT+Y
Sbjct: 164 GDSLWKIANSLNMTVAELKTLNGLTSDTLY 193
>sp|Q9D7V2|LYSM2_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Mus musculus GN=Lysmd2 PE=2 SV=2
Length = 215
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 13 PASCRIVE------ILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFL 61
P R++E + GDTL G ++K GV+++ IK AN L ++ CIFL
Sbjct: 61 PLGARVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKL------FTNDCIFL 109
>sp|Q5PQ30|LYSM1_XENLA LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Xenopus laevis GN=lysmd1 PE=2 SV=1
Length = 215
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 13 PASCRIVE--ILRGDTLWGFSMKCGVSIDAIKEANGL-SGDTIY 53
PA R +E + GDTL G +++ GVS++ IK AN L + D+I+
Sbjct: 31 PAQIRKLEHQVQPGDTLQGLALRYGVSMEQIKRANRLYTNDSIF 74
>sp|Q1JQA8|LYSM2_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Bos taurus GN=LYSMD2 PE=2 SV=1
Length = 215
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFL 61
GDTL G ++K GVS++ IK AN L ++ CIFL
Sbjct: 79 GDTLQGIALKYGVSMEQIKRANKL------FTNDCIFL 110
>sp|Q3B7I8|LYSM2_XENTR LysM and putative peptidoglycan-binding domain-containing protein
2 OS=Xenopus tropicalis GN=lysmd2 PE=2 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 13 PASCRIVE--ILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFL 61
P S R +E + DTL G ++K GV+++ IK AN L +S CIFL
Sbjct: 55 PLSERYIEHRLSPSDTLQGIALKYGVTMEQIKRANKL------FSTDCIFL 99
>sp|Q8IV50|LYSM2_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Homo sapiens GN=LYSMD2 PE=1 SV=1
Length = 215
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFL 61
GDTL G ++K GV+++ IK AN L ++ CIFL
Sbjct: 78 GDTLQGIALKYGVTMEQIKRANKL------FTNDCIFL 109
>sp|Q3KPL3|LYSM2_XENLA LysM and putative peptidoglycan-binding domain-containing protein
2 OS=Xenopus laevis GN=lysmd2 PE=2 SV=2
Length = 206
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 25 DTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFL 61
DTL G ++K GV+++ IK AN L +S CIFL
Sbjct: 67 DTLQGIALKYGVTMEQIKRANKL------FSTDCIFL 97
>sp|O07532|LYTF_BACSU Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168)
GN=lytF PE=1 SV=2
Length = 488
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
GD+LW + K +SI +K N L DTIY
Sbjct: 181 GDSLWKIANKVNMSIAELKVLNNLKSDTIY 210
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 13 PASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLS 48
PA +++ GD+LW + S+ A+ AN LS
Sbjct: 23 PAEAATIKVKSGDSLWKLAQTYNTSVAALTSANHLS 58
>sp|Q8CMN2|SLE1_STAES N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sle1 PE=3 SV=1
Length = 324
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K NGL+ + I+
Sbjct: 34 GESVWSISHKYGISIAKLKSLNGLTSNLIF 63
>sp|Q5HRU2|SLE1_STAEQ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sle1 PE=3
SV=1
Length = 324
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K NGL+ + I+
Sbjct: 34 GESVWSISHKYGISIAKLKSLNGLTSNLIF 63
>sp|Q9N012|LYSM1_MACFA LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Macaca fascicularis GN=LYSMD1 PE=2 SV=1
Length = 227
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGL-SGDTIY 53
GDTL G ++K GV+++ IK AN L + D+I+
Sbjct: 47 GDTLAGLALKYGVTMEQIKRANRLYTNDSIF 77
>sp|Q96S90|LYSM1_HUMAN LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Homo sapiens GN=LYSMD1 PE=1 SV=1
Length = 227
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGL-SGDTIY 53
GDTL G ++K GV+++ IK AN L + D+I+
Sbjct: 47 GDTLAGLALKYGVTMEQIKRANRLYTNDSIF 77
>sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Bos taurus GN=LYSMD1 PE=2 SV=1
Length = 225
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGL-SGDTIY 53
GDTL G ++K GV+++ IK AN L + D+I+
Sbjct: 47 GDTLAGLALKYGVTMEQIKRANRLYTNDSIF 77
>sp|C0H403|YKZQ_BACSU Uncharacterized protein YkzQ OS=Bacillus subtilis (strain 168)
GN=ykzQ PE=4 SV=1
Length = 75
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 13 PASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
P + + + GDTLW + + + + N LS D IY
Sbjct: 25 PVTYEVYHVESGDTLWTIAKSFEIPVQQLMNLNKLSSDRIY 65
>sp|Q4L3C1|SLE1_STAHJ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=sle1 PE=3 SV=1
Length = 329
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G++LW S G+++ +K NGLS + I+
Sbjct: 35 GESLWSISHHYGITVSKLKSLNGLSSNLIF 64
>sp|Q5HZA4|LYSM1_RAT LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Rattus norvegicus GN=Lysmd1 PE=2 SV=1
Length = 227
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGL-SGDTIY 53
GDTL G ++K GV+++ IK N L + D+I+
Sbjct: 47 GDTLAGLALKYGVTMEQIKRTNRLYTNDSIF 77
>sp|Q9D0E3|LYSM1_MOUSE LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Mus musculus GN=Lysmd1 PE=1 SV=1
Length = 226
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGL-SGDTIY 53
GDTL G ++K GV+++ IK N L + D+I+
Sbjct: 47 GDTLAGLALKYGVTMEQIKRTNRLYTNDSIF 77
>sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Danio rerio GN=lysmd2 PE=2 SV=1
Length = 208
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFL 61
G+TL G ++K GV+++ IK N L +S CIFL
Sbjct: 72 GETLQGIALKYGVTMEQIKRVNKL------FSNDCIFL 103
>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
SV=1
Length = 643
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 21 ILRGDTLWGFSMKCGVSIDAIKEAN 45
+ +GDTLW + K GV D +K+ N
Sbjct: 6 VQKGDTLWKIAKKYGVDFDTLKKTN 30
>sp|O31974|YOMK_BACSU SPBc2 prophage-derived uncharacterized protein YomK OS=Bacillus
subtilis (strain 168) GN=yomK PE=4 SV=1
Length = 148
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 8 KSEPEPASC-RIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFLCL 63
KS+ +P+ I ++ G + GF + GV+I I E N L + + Y +I I +CL
Sbjct: 63 KSQYDPSKTWGIGSLILGTSFIGFQVLFGVNISKITEGNRL--NALIYVLITIIICL 117
>sp|Q7A1T4|SLE1_STAAW N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MW2) GN=sle1 PE=3 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|P0C1U7|SLE1_STAAU N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
GN=sle1 PE=4 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q6GC24|SLE1_STAAS N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MSSA476) GN=sle1 PE=3 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q6GJK9|SLE1_STAAR N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MRSA252) GN=sle1 PE=3 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q7A7E0|SLE1_STAAN N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain N315) GN=sle1 PE=1 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q5HIL2|SLE1_STAAC N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain COL) GN=sle1 PE=3 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q2YVT4|SLE1_STAAB N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=sle1 PE=3 SV=1
Length = 335
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q2G0U9|SLE1_STAA8 N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain NCTC 8325) GN=sle1 PE=1 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
>sp|Q2FJH7|SLE1_STAA3 N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain USA300) GN=sle1 PE=3 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 GDTLWGFSMKCGVSIDAIKEANGLSGDTIY 53
G+++W S K G+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,856,948
Number of Sequences: 539616
Number of extensions: 734594
Number of successful extensions: 1309
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 93
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)