Query 037180
Match_columns 66
No_of_seqs 123 out of 1319
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e0g_A Membrane-bound lytic mu 99.6 4.9E-16 1.7E-20 75.5 5.1 45 17-62 3-47 (48)
2 2djp_A Hypothetical protein SB 99.6 7.7E-16 2.6E-20 81.7 4.7 49 16-64 15-64 (77)
3 2l9y_A CVNH-LYSM lectin; carbo 99.6 2.8E-15 9.7E-20 89.9 6.6 52 13-64 59-111 (167)
4 4eby_A Chitin elicitor recepto 99.4 9.6E-13 3.3E-17 81.3 5.3 47 17-63 79-128 (212)
5 4eby_A Chitin elicitor recepto 99.3 1.8E-12 6E-17 80.1 4.8 47 17-63 10-66 (212)
6 4a1k_A Putative L, D-transpept 99.1 9.9E-11 3.4E-15 69.8 4.6 46 17-62 3-48 (165)
7 2gu1_A Zinc peptidase; alpha/b 99.0 2.8E-10 9.5E-15 74.5 4.0 49 15-63 6-59 (361)
8 2gu1_A Zinc peptidase; alpha/b 98.3 5.3E-07 1.8E-11 59.0 4.1 46 17-62 101-152 (361)
9 3slu_A M23 peptidase domain pr 97.8 6E-05 2E-09 49.8 6.8 47 17-63 15-66 (371)
10 2l9y_A CVNH-LYSM lectin; carbo 92.7 0.00039 1.3E-08 41.3 -7.5 30 17-46 126-155 (167)
11 2glo_A Brinker CG9653-PA; prot 89.2 0.48 1.7E-05 22.7 3.1 24 22-45 19-46 (59)
12 2lfc_A Fumarate reductase, fla 88.9 0.3 1E-05 28.1 2.6 26 20-45 91-120 (160)
13 1tc3_C Protein (TC3 transposas 87.1 0.93 3.2E-05 19.8 3.2 23 22-44 19-41 (51)
14 2jn6_A Protein CGL2762, transp 87.0 0.57 1.9E-05 24.4 2.7 22 24-45 23-44 (97)
15 2elh_A CG11849-PA, LD40883P; s 86.8 0.77 2.6E-05 23.7 3.1 23 22-44 36-58 (87)
16 2jrt_A Uncharacterized protein 85.9 0.87 3E-05 24.5 3.1 24 22-45 47-70 (95)
17 1jko_C HIN recombinase, DNA-in 84.8 1 3.5E-05 20.0 2.7 24 21-44 18-41 (52)
18 2x48_A CAG38821; archeal virus 79.3 2.7 9.4E-05 19.3 3.2 23 22-44 29-51 (55)
19 2rn7_A IS629 ORFA; helix, all 78.2 0.88 3E-05 24.1 1.3 22 24-45 30-51 (108)
20 3slu_A M23 peptidase domain pr 77.0 11 0.00038 24.7 6.4 40 22-61 115-159 (371)
21 1rr7_A Middle operon regulator 74.5 3.3 0.00011 23.2 3.0 21 24-44 92-112 (129)
22 2k5e_A Uncharacterized protein 74.0 3.2 0.00011 21.0 2.7 23 23-45 39-62 (73)
23 1neq_A DNA-binding protein NER 71.7 4.7 0.00016 20.2 3.0 23 22-44 20-42 (74)
24 2p7v_B Sigma-70, RNA polymeras 71.1 6 0.0002 19.0 3.3 22 23-44 24-45 (68)
25 1pdn_C Protein (PRD paired); p 70.9 5.1 0.00018 20.9 3.2 23 22-44 31-53 (128)
26 2k53_A A3DK08 protein; NESG, C 69.6 5.7 0.0002 20.2 3.1 23 23-45 37-60 (76)
27 2o8x_A Probable RNA polymerase 67.5 7.7 0.00026 18.2 3.2 22 22-43 29-50 (70)
28 1ku3_A Sigma factor SIGA; heli 67.0 8 0.00028 18.7 3.3 21 23-43 29-49 (73)
29 1k78_A Paired box protein PAX5 66.7 6.7 0.00023 21.5 3.2 23 22-44 46-68 (149)
30 2dgz_A Werner syndrome protein 66.1 1 3.5E-05 24.9 -0.3 33 19-51 44-76 (113)
31 2oa4_A SIR5; structure, struct 66.0 6 0.0002 21.5 2.8 24 22-45 48-71 (101)
32 1u78_A TC3 transposase, transp 65.8 6.7 0.00023 21.0 3.0 23 22-44 20-42 (141)
33 1fse_A GERE; helix-turn-helix 62.6 10 0.00035 18.0 3.2 22 22-43 24-45 (74)
34 1xn7_A Hypothetical protein YH 62.1 8.8 0.0003 19.6 2.9 20 25-44 17-36 (78)
35 4abx_A DNA repair protein RECN 61.0 7.1 0.00024 22.6 2.7 20 25-44 132-151 (175)
36 1tty_A Sigma-A, RNA polymerase 60.9 12 0.00041 18.8 3.3 21 23-43 37-57 (87)
37 3ah7_A [2Fe-2S]ferredoxin; [2F 59.5 11 0.00037 20.1 3.1 25 15-39 15-39 (113)
38 1frr_A Ferredoxin I; electron 58.7 12 0.00042 19.0 3.1 23 17-39 13-35 (95)
39 2jpc_A SSRB; DNA binding prote 58.1 11 0.00038 17.3 2.7 22 22-43 11-32 (61)
40 1frd_A Heterocyst [2Fe-2S] fer 57.8 12 0.0004 19.3 3.0 25 16-40 15-39 (98)
41 3frw_A Putative Trp repressor 57.8 12 0.00042 20.5 3.1 26 21-46 55-80 (107)
42 2ek5_A Predicted transcription 57.7 11 0.00038 20.7 3.0 24 21-44 22-48 (129)
43 1i7h_A Ferredoxin; 2Fe-2S,elec 56.8 13 0.00044 19.7 3.1 25 15-39 15-39 (111)
44 1sfu_A 34L protein; protein/Z- 56.2 15 0.0005 18.9 3.1 20 23-42 26-47 (75)
45 3tqn_A Transcriptional regulat 56.0 15 0.00051 19.5 3.3 24 21-44 27-53 (113)
46 2k02_A Ferrous iron transport 56.0 11 0.00038 19.7 2.7 20 25-44 17-36 (87)
47 1x3u_A Transcriptional regulat 55.5 16 0.00056 17.5 3.2 22 22-43 29-50 (79)
48 2k27_A Paired box protein PAX- 54.9 9.4 0.00032 21.2 2.4 24 22-45 39-62 (159)
49 2wlb_A ETP1-FD, electron trans 54.8 15 0.00051 19.1 3.1 22 17-38 16-37 (103)
50 2bt6_A Adrenodoxin 1; rutheniu 54.4 14 0.00049 19.4 3.0 22 18-39 20-41 (108)
51 3bd1_A CRO protein; transcript 54.3 15 0.00052 17.8 3.0 22 22-44 10-31 (79)
52 1je8_A Nitrate/nitrite respons 54.2 17 0.00057 18.1 3.2 22 22-43 34-55 (82)
53 1jq4_A Methane monooxygenase c 53.9 14 0.00048 19.0 2.9 24 16-39 16-39 (98)
54 3hug_A RNA polymerase sigma fa 53.0 18 0.00062 18.2 3.2 22 22-43 51-72 (92)
55 3neu_A LIN1836 protein; struct 51.5 9.2 0.00031 20.8 2.0 24 21-44 31-57 (125)
56 2ao9_A Phage protein; structur 51.5 18 0.00063 21.0 3.3 23 24-46 48-70 (155)
57 2rrd_A BLM HRDC domain, HRDC d 51.4 2.2 7.5E-05 23.0 -0.6 31 19-49 44-74 (101)
58 2pij_A Prophage PFL 6 CRO; tra 51.4 18 0.00061 16.8 2.9 23 21-44 11-33 (67)
59 4dyq_A Gene 1 protein; GP1, oc 50.8 7.9 0.00027 21.6 1.6 24 21-44 25-49 (140)
60 4ham_A LMO2241 protein; struct 50.2 11 0.00038 20.6 2.2 25 20-44 31-58 (134)
61 2fi0_A Conserved domain protei 50.2 18 0.00061 18.4 2.9 24 23-46 48-72 (81)
62 2xi8_A Putative transcription 50.1 18 0.00062 16.4 3.0 23 22-44 12-34 (66)
63 2ovi_A Hypothetical protein CH 50.1 17 0.00058 21.1 3.0 23 22-44 13-35 (164)
64 2ph0_A Uncharacterized protein 49.9 17 0.0006 21.3 3.1 23 22-44 12-34 (174)
65 1xlq_A Putidaredoxin, PDX; [2F 49.8 16 0.00055 19.1 2.8 21 17-37 13-33 (106)
66 2y5c_A Adrenodoxin-like protei 49.8 19 0.00064 19.0 3.0 21 18-38 19-39 (109)
67 2cob_A LCOR protein; MLR2, KIA 49.5 15 0.00051 18.7 2.4 22 21-42 26-48 (70)
68 3i71_A Ethanolamine utilizatio 49.4 22 0.00074 17.7 2.9 23 20-42 14-36 (68)
69 1y0p_A Fumarate reductase flav 49.1 10 0.00035 25.5 2.2 25 22-46 442-470 (571)
70 3b7h_A Prophage LP1 protein 11 48.5 22 0.00074 16.8 3.0 23 22-44 18-40 (78)
71 2kv2_A Bloom syndrome protein; 48.5 2.4 8.1E-05 21.9 -0.8 31 19-49 29-59 (85)
72 1a70_A Ferredoxin; iron-sulfur 48.4 21 0.00071 18.4 3.0 23 17-39 14-36 (97)
73 1czp_A Ferredoxin I; [2Fe-2S] 48.3 21 0.00071 18.4 3.0 24 16-39 15-38 (98)
74 1hlv_A CENP-B, major centromer 48.2 15 0.00052 19.6 2.5 23 22-44 22-45 (131)
75 2zp2_A Kinase A inhibitor; KIP 48.2 21 0.00071 20.5 3.2 23 23-45 13-35 (141)
76 1iue_A Ferredoxin; electron tr 48.0 21 0.00072 18.4 3.0 23 17-39 14-36 (98)
77 3t72_q RNA polymerase sigma fa 47.9 22 0.00074 18.8 3.0 21 23-43 38-58 (99)
78 3kor_A Possible Trp repressor; 47.8 19 0.00066 20.1 2.9 26 21-46 72-97 (119)
79 2e1f_A Werner syndrome ATP-dep 47.7 2 6.8E-05 23.3 -1.2 31 19-49 37-67 (103)
80 3mzy_A RNA polymerase sigma-H 47.6 22 0.00076 19.0 3.2 22 22-43 122-143 (164)
81 2xvc_A ESCRT-III, SSO0910; cel 47.3 23 0.00077 17.4 2.8 18 27-44 28-45 (59)
82 3qq6_A HTH-type transcriptiona 47.3 24 0.00082 17.1 3.0 26 19-44 18-43 (78)
83 3bs3_A Putative DNA-binding pr 47.2 22 0.00077 16.6 3.0 24 21-44 20-43 (76)
84 1uxc_A FRUR (1-57), fructose r 46.8 22 0.00076 17.2 2.8 19 26-44 2-20 (65)
85 1uwm_A Ferredoxin VI, FDVI; el 46.8 20 0.0007 18.7 2.8 21 17-37 13-33 (106)
86 2b0l_A GTP-sensing transcripti 46.4 18 0.0006 19.1 2.6 23 22-44 38-63 (102)
87 1s7o_A Hypothetical UPF0122 pr 46.3 25 0.00087 18.8 3.2 22 22-43 36-57 (113)
88 1awd_A Ferredoxin; electron tr 46.3 20 0.00069 18.3 2.7 23 17-39 12-34 (94)
89 1y6u_A XIS, excisionase from t 45.9 16 0.00056 18.2 2.2 36 26-61 18-56 (70)
90 3omt_A Uncharacterized protein 45.7 22 0.00076 16.7 2.7 25 20-44 17-41 (73)
91 3c57_A Two component transcrip 45.0 28 0.00097 17.8 3.2 22 22-43 40-61 (95)
92 4at0_A 3-ketosteroid-delta4-5a 44.5 10 0.00035 25.1 1.7 22 24-45 385-410 (510)
93 1v4r_A Transcriptional repress 44.4 16 0.00054 18.8 2.2 29 21-49 29-61 (102)
94 1nd9_A Translation initiation 44.3 14 0.00049 16.3 1.8 19 26-44 4-22 (49)
95 1zug_A Phage 434 CRO protein; 44.2 24 0.00083 16.2 3.0 23 22-44 14-36 (71)
96 2kpj_A SOS-response transcript 43.7 31 0.0011 17.2 3.2 22 23-44 21-42 (94)
97 2b5a_A C.BCLI; helix-turn-heli 43.1 27 0.00092 16.4 3.0 23 22-44 21-43 (77)
98 2heo_A Z-DNA binding protein 1 43.1 24 0.00082 17.0 2.6 19 25-43 26-44 (67)
99 1qo8_A Flavocytochrome C3 fuma 42.9 15 0.0005 24.7 2.2 24 22-45 437-464 (566)
100 2k9q_A Uncharacterized protein 42.5 25 0.00085 16.8 2.6 20 24-43 15-34 (77)
101 1y7y_A C.AHDI; helix-turn-heli 42.3 27 0.00093 16.2 3.0 23 22-44 24-46 (74)
102 2r1j_L Repressor protein C2; p 42.2 26 0.00088 15.9 3.1 23 22-44 16-38 (68)
103 2ga1_A Protein of unknown func 42.2 30 0.001 18.8 3.1 24 21-44 61-85 (106)
104 1xsv_A Hypothetical UPF0122 pr 42.2 33 0.0011 18.2 3.3 21 22-42 39-59 (113)
105 1wud_A ATP-dependent DNA helic 42.0 3.7 0.00012 21.4 -0.7 31 19-49 35-65 (89)
106 2jml_A DNA binding domain/tran 41.9 20 0.0007 17.8 2.3 19 26-44 7-25 (81)
107 3lsg_A Two-component response 41.9 28 0.00096 17.7 2.9 20 24-43 19-38 (103)
108 3lxf_A Ferredoxin; iron, iron- 41.5 25 0.00087 18.4 2.7 21 17-37 13-33 (104)
109 3mn2_A Probable ARAC family tr 41.4 28 0.00095 17.9 2.8 20 24-43 18-37 (108)
110 2ofy_A Putative XRE-family tra 41.4 15 0.0005 18.0 1.7 20 25-44 58-77 (86)
111 3ggy_A Increased sodium tolera 41.2 19 0.00065 21.6 2.3 19 25-43 171-189 (193)
112 1b0n_B Protein (SINI protein); 41.1 21 0.00072 17.3 2.1 17 29-45 20-36 (57)
113 3t76_A VANU, transcriptional r 40.9 33 0.0011 17.5 3.0 26 20-45 33-58 (88)
114 1r69_A Repressor protein CI; g 40.9 28 0.00095 15.9 3.0 23 22-44 12-34 (69)
115 1d4d_A Flavocytochrome C fumar 40.8 16 0.00055 24.7 2.2 26 21-46 441-470 (572)
116 2kfs_A Conserved hypothetical 40.8 34 0.0011 19.8 3.3 37 26-62 33-70 (148)
117 2l0k_A Stage III sporulation p 40.7 29 0.00098 18.2 2.8 22 23-44 19-40 (93)
118 1b9r_A Protein (terpredoxin); 40.7 19 0.00066 18.7 2.1 21 17-37 13-33 (105)
119 3qwg_A ESX-1 secretion-associa 40.7 11 0.00036 20.8 1.1 18 25-42 60-77 (123)
120 2l8n_A Transcriptional repress 40.7 30 0.001 16.8 2.7 20 25-44 10-29 (67)
121 2a6c_A Helix-turn-helix motif; 40.3 34 0.0012 16.7 3.2 24 21-44 28-51 (83)
122 2fcw_A Alpha-2-macroglobulin r 39.8 24 0.00082 19.5 2.4 19 26-44 11-29 (109)
123 3hui_A Ferredoxin; cytochrome 39.7 26 0.00089 19.3 2.6 21 17-37 34-54 (126)
124 1l5p_A Ferredoxin; [2Fe-2S] cl 39.7 16 0.00053 18.8 1.6 20 18-37 13-32 (93)
125 3s8q_A R-M controller protein; 39.5 33 0.0011 16.4 3.0 23 22-44 22-44 (82)
126 2rhf_A DNA helicase RECQ; HRDC 39.2 3.1 0.00011 21.0 -1.2 31 19-49 27-57 (77)
127 3oou_A LIN2118 protein; protei 39.1 31 0.001 17.7 2.8 20 24-43 21-40 (108)
128 2rnj_A Response regulator prot 38.9 25 0.00086 17.7 2.4 22 22-43 42-63 (91)
129 1gdt_A GD resolvase, protein ( 38.9 35 0.0012 19.4 3.2 23 22-44 156-178 (183)
130 3oio_A Transcriptional regulat 38.8 31 0.0011 17.9 2.8 20 24-43 23-42 (113)
131 3r1f_A ESX-1 secretion-associa 38.6 12 0.00039 20.9 1.0 18 25-42 62-79 (135)
132 3f6w_A XRE-family like protein 38.5 31 0.0011 16.6 2.6 23 22-44 25-47 (83)
133 3iuo_A ATP-dependent DNA helic 38.4 36 0.0012 18.5 3.1 23 21-43 29-51 (122)
134 1r8d_A Transcription activator 37.9 33 0.0011 18.0 2.8 20 26-45 4-23 (109)
135 3kz3_A Repressor protein CI; f 37.8 33 0.0011 16.5 2.7 23 22-44 23-45 (80)
136 1fc3_A SPO0A; response regulat 37.7 25 0.00087 19.5 2.4 19 25-43 49-67 (120)
137 1adr_A P22 C2 repressor; trans 37.5 34 0.0012 15.9 3.1 23 22-44 16-38 (76)
138 2wiu_B HTH-type transcriptiona 37.1 38 0.0013 16.3 3.0 23 22-44 23-45 (88)
139 2l32_A Small archaeal modifier 36.7 14 0.00048 18.5 1.1 45 17-61 13-60 (74)
140 1wi9_A Protein C20ORF116 homol 36.6 37 0.0013 17.3 2.7 16 26-41 23-38 (72)
141 2k9s_A Arabinose operon regula 36.2 37 0.0013 17.3 2.8 20 24-43 20-39 (107)
142 2r0q_C Putative transposon TN5 36.2 40 0.0014 19.6 3.2 24 22-45 173-196 (209)
143 2ef8_A C.ECOT38IS, putative tr 36.1 38 0.0013 16.1 3.0 23 22-44 21-43 (84)
144 3by6_A Predicted transcription 36.1 40 0.0014 18.2 3.0 24 21-44 29-55 (126)
145 2vz4_A Tipal, HTH-type transcr 36.0 38 0.0013 17.8 2.8 20 26-45 3-22 (108)
146 2di3_A Bacterial regulatory pr 35.5 32 0.0011 20.3 2.7 24 21-44 22-48 (239)
147 1lmb_3 Protein (lambda repress 34.9 37 0.0013 16.6 2.6 23 22-44 28-50 (92)
148 2jt1_A PEFI protein; solution 34.3 37 0.0013 17.1 2.5 17 26-42 26-42 (77)
149 1z67_A Hypothetical protein S4 34.1 24 0.00081 20.1 1.9 19 24-42 75-93 (135)
150 3mkl_A HTH-type transcriptiona 34.0 43 0.0015 17.5 2.9 21 24-44 23-43 (120)
151 1rp3_A RNA polymerase sigma fa 33.4 48 0.0016 18.9 3.3 22 22-43 201-222 (239)
152 1ufm_A COP9 complex subunit 4; 32.9 42 0.0014 17.2 2.6 19 26-44 32-50 (84)
153 1hw1_A FADR, fatty acid metabo 32.8 37 0.0013 19.9 2.7 24 21-44 25-51 (239)
154 1j1v_A Chromosomal replication 32.5 39 0.0013 17.6 2.5 18 26-43 6-23 (94)
155 2wus_R RODZ, putative uncharac 32.4 57 0.0019 17.3 3.2 20 23-42 19-38 (112)
156 1b0n_A Protein (SINR protein); 32.2 53 0.0018 16.6 3.0 16 27-42 47-62 (111)
157 1j9i_A GPNU1 DBD;, terminase s 32.2 46 0.0016 15.8 4.0 22 26-47 4-25 (68)
158 1or7_A Sigma-24, RNA polymeras 31.5 55 0.0019 18.1 3.2 22 22-43 154-175 (194)
159 1doi_A 2Fe-2S ferredoxin; halo 31.3 53 0.0018 18.0 3.1 22 18-39 39-60 (128)
160 2ewt_A BLDD, putative DNA-bind 31.2 44 0.0015 15.3 3.0 23 22-44 19-43 (71)
161 1q06_A Transcriptional regulat 31.2 48 0.0016 18.2 2.8 20 26-45 2-21 (135)
162 2htj_A P fimbrial regulatory p 31.2 51 0.0017 16.0 2.8 20 24-43 14-33 (81)
163 1rzs_A Antirepressor, regulato 31.1 46 0.0016 15.5 2.5 22 24-45 10-31 (61)
164 3ulq_B Transcriptional regulat 31.0 57 0.0019 16.6 3.2 23 21-43 41-63 (90)
165 3fmy_A HTH-type transcriptiona 30.9 38 0.0013 16.2 2.2 24 21-44 21-44 (73)
166 3g5g_A Regulatory protein; tra 30.8 58 0.002 16.6 3.0 24 21-44 38-61 (99)
167 1wri_A Ferredoxin II, ferredox 30.8 50 0.0017 16.7 2.7 21 17-38 13-33 (93)
168 2hin_A GP39, repressor protein 30.5 55 0.0019 16.2 2.8 18 27-44 13-30 (71)
169 2j0p_A HEMS, hemin transport p 30.5 52 0.0018 21.4 3.3 23 22-44 16-38 (345)
170 3vk0_A NHTF, transcriptional r 30.3 59 0.002 16.8 3.0 25 20-44 30-54 (114)
171 1x57_A Endothelial differentia 29.9 55 0.0019 16.0 3.2 24 21-44 23-46 (91)
172 3pvv_A Chromosomal replication 29.7 46 0.0016 17.7 2.5 21 24-44 8-28 (101)
173 3hh0_A Transcriptional regulat 29.5 52 0.0018 18.4 2.8 22 25-46 5-26 (146)
174 3mlf_A Transcriptional regulat 29.5 60 0.0021 16.9 3.0 25 20-44 32-56 (111)
175 2l49_A C protein; P2 bacteriop 29.3 58 0.002 16.1 3.1 23 22-44 15-37 (99)
176 2phc_B Uncharacterized protein 28.6 58 0.002 19.8 3.1 22 24-45 97-118 (225)
177 1y66_A Engrailed homeodomain; 28.4 10 0.00035 17.7 -0.3 19 25-43 25-43 (52)
178 2hq2_A Putative heme/hemoglobi 28.1 61 0.0021 21.3 3.3 23 22-44 26-48 (354)
179 3fym_A Putative uncharacterize 28.1 66 0.0023 17.3 3.1 19 27-45 54-72 (130)
180 1l9z_H Sigma factor SIGA; heli 27.8 54 0.0018 22.0 3.0 21 23-43 394-414 (438)
181 2ppx_A AGR_C_3184P, uncharacte 27.8 65 0.0022 16.2 3.0 23 22-44 41-63 (99)
182 2ict_A Antitoxin HIGA; helix-t 27.6 62 0.0021 15.9 3.1 23 22-44 19-41 (94)
183 4ghj_A Probable transcriptiona 27.3 71 0.0024 16.7 3.0 26 19-44 44-69 (101)
184 3gpv_A Transcriptional regulat 27.3 61 0.0021 18.1 2.9 21 25-45 17-37 (148)
185 2k89_A PLA2P, PLAP, phospholip 27.2 35 0.0012 17.7 1.7 17 18-34 32-48 (80)
186 1oyi_A Double-stranded RNA-bin 27.2 55 0.0019 16.9 2.5 22 22-43 28-49 (82)
187 2w7n_A TRFB transcriptional re 27.2 78 0.0027 16.9 3.3 21 22-42 32-52 (101)
188 3gp4_A Transcriptional regulat 27.0 60 0.002 18.0 2.8 20 26-45 4-23 (142)
189 2v79_A DNA replication protein 26.9 47 0.0016 18.4 2.3 22 23-44 50-71 (135)
190 2o3f_A Putative HTH-type trans 26.4 69 0.0024 16.9 2.9 21 24-44 39-59 (111)
191 1qgp_A Protein (double strande 26.2 65 0.0022 15.9 2.6 20 24-43 31-50 (77)
192 3mml_B Allophanate hydrolase s 26.2 67 0.0023 19.7 3.1 23 23-45 112-134 (228)
193 3eus_A DNA-binding protein; st 26.1 66 0.0023 15.7 3.1 24 21-44 24-47 (86)
194 2jvl_A TRMBF1; coactivator, he 26.0 76 0.0026 16.4 3.1 23 22-44 47-69 (107)
195 2eby_A Putative HTH-type trans 25.9 74 0.0025 16.2 3.2 24 21-44 21-44 (113)
196 1y9q_A Transcriptional regulat 25.9 68 0.0023 18.0 3.0 23 22-44 22-44 (192)
197 1p4w_A RCSB; solution structur 25.9 77 0.0026 16.4 3.1 23 21-43 46-68 (99)
198 1bl0_A Protein (multiple antib 25.4 50 0.0017 17.5 2.2 19 25-43 28-46 (129)
199 3op9_A PLI0006 protein; struct 25.3 65 0.0022 16.5 2.6 18 26-43 53-70 (114)
200 2bnm_A Epoxidase; oxidoreducta 25.2 74 0.0025 17.9 3.0 20 23-42 22-41 (198)
201 2lfw_A PHYR sigma-like domain; 25.2 68 0.0023 17.5 2.8 21 22-42 107-127 (157)
202 2q73_A MAZG, hypothetical prot 25.1 64 0.0022 16.7 2.5 22 24-45 60-84 (100)
203 2d1h_A ST1889, 109AA long hypo 24.9 67 0.0023 15.8 2.6 21 23-43 35-55 (109)
204 3iwf_A Transcription regulator 24.9 73 0.0025 16.8 2.8 21 24-44 35-55 (107)
205 2hsg_A Glucose-resistance amyl 24.8 64 0.0022 19.5 2.8 19 26-44 4-22 (332)
206 4a0z_A Transcription factor FA 24.8 62 0.0021 19.0 2.7 18 25-42 27-44 (190)
207 3edp_A LIN2111 protein; APC883 24.6 51 0.0018 19.7 2.3 24 21-44 27-53 (236)
208 2o71_A Death domain-containing 24.6 90 0.0031 16.9 3.2 20 24-43 35-54 (115)
209 3f52_A CLP gene regulator (CLG 24.6 70 0.0024 16.5 2.7 22 23-44 40-61 (117)
210 3e11_A Predicted zincin-like m 24.4 57 0.002 17.7 2.3 17 27-43 95-111 (114)
211 3f8m_A GNTR-family protein tra 24.1 62 0.0021 19.5 2.7 24 21-44 30-56 (248)
212 2nsa_A Trigger factor, TF; cha 23.9 69 0.0023 17.9 2.7 17 27-43 118-134 (170)
213 1hmj_A RPB5, protein (subunit 23.7 57 0.002 16.8 2.1 46 19-64 12-61 (78)
214 2zhg_A Redox-sensitive transcr 23.7 74 0.0025 17.9 2.8 22 24-45 11-32 (154)
215 3ivp_A Putative transposon-rel 23.7 88 0.003 16.3 3.0 23 22-44 23-45 (126)
216 1qbj_A Protein (double-strande 23.4 82 0.0028 15.9 2.8 19 25-43 28-46 (81)
217 1qpz_A PURA, protein (purine n 23.4 69 0.0024 19.5 2.8 19 26-44 2-20 (340)
218 2wv0_A YVOA, HTH-type transcri 23.3 69 0.0023 19.2 2.7 24 21-44 28-54 (243)
219 1z4h_A TORI, TOR inhibition pr 23.2 71 0.0024 15.1 2.8 34 26-59 12-47 (66)
220 3n9z_C Adrenodoxin; cytochrome 23.0 18 0.0006 19.9 0.0 22 18-39 19-40 (123)
221 3cec_A Putative antidote prote 22.9 84 0.0029 15.8 3.1 24 21-44 28-51 (104)
222 3uj3_X DNA-invertase; helix-tu 22.8 18 0.00061 20.8 0.0 24 21-44 155-178 (193)
223 2of5_A Death domain-containing 22.7 85 0.0029 16.9 2.8 20 24-43 35-54 (114)
224 1u8b_A ADA polyprotein; protei 22.6 97 0.0033 16.4 3.3 23 22-44 91-113 (133)
225 3frr_A Uncharacterized protein 22.6 25 0.00087 21.0 0.7 15 25-39 166-180 (191)
226 3bwg_A Uncharacterized HTH-typ 22.6 92 0.0031 18.5 3.2 24 21-44 23-49 (239)
227 2oie_A RS21-C6; helix, hydrola 22.0 84 0.0029 16.4 2.7 19 27-45 88-106 (111)
228 2y75_A HTH-type transcriptiona 21.9 91 0.0031 16.5 2.8 19 25-43 27-45 (129)
229 1q1h_A TFE, transcription fact 21.5 81 0.0028 16.1 2.5 20 25-44 34-53 (110)
230 3kxa_A NGO0477 protein, putati 21.3 1.1E+02 0.0036 16.8 3.1 23 22-44 79-101 (141)
231 2q5z_A MAZG, hypothetical prot 21.0 98 0.0034 16.5 2.8 19 27-45 86-104 (114)
232 1y56_A Hypothetical protein PH 20.9 89 0.003 20.5 3.1 22 16-37 22-43 (493)
233 2q0o_A Probable transcriptiona 20.8 1.1E+02 0.0037 17.9 3.2 23 21-43 187-209 (236)
234 1whz_A Hypothetical protein; a 20.4 78 0.0027 15.1 2.2 19 25-43 51-69 (70)
235 2k9i_A Plasmid PRN1, complete 20.3 73 0.0025 14.1 2.6 19 25-43 22-40 (55)
236 3h5t_A Transcriptional regulat 20.1 72 0.0025 19.6 2.4 19 24-42 9-27 (366)
237 3kjx_A Transcriptional regulat 20.1 64 0.0022 19.6 2.2 18 25-42 11-28 (344)
238 3trb_A Virulence-associated pr 20.1 1.1E+02 0.0036 15.9 3.2 23 22-44 25-47 (104)
239 1ryj_A Unknown; beta/alpha pro 20.1 89 0.003 15.0 2.4 43 18-60 17-63 (70)
No 1
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.63 E-value=4.9e-16 Score=75.51 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=42.2
Q ss_pred cEEEEccCCcHHHHHHHhCCCHHHHHHhhCCCCCCcCCCCEEEEcc
Q 037180 17 RIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFLC 62 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~~~l~~G~~l~i~~ 62 (66)
.+|+|++|||||+||++|++++++|+++|+ ....+++||.|.|+.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~-~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS-CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC-CCCcCCcCCEEEEec
Confidence 579999999999999999999999999999 668899999999985
No 2
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-16 Score=81.70 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=44.8
Q ss_pred ccEEEEccCCcHHHHHHHhCCCHHHHHHhhCCCC-CCcCCCCEEEEcccC
Q 037180 16 CRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSG-DTIYYSIICIFLCLS 64 (66)
Q Consensus 16 ~~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~-~~l~~G~~l~i~~~~ 64 (66)
..+|+|++|||||+||++|++++++|+++|++.. ..+++||.|.||..+
T Consensus 15 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 15 RLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp EEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 4579999999999999999999999999999975 789999999998754
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.59 E-value=2.8e-15 Score=89.89 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCCccEEEEccCCcHHHHHHHhCCCHHHHHHhhCCCC-CCcCCCCEEEEcccC
Q 037180 13 PASCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLSG-DTIYYSIICIFLCLS 64 (66)
Q Consensus 13 ~~~~~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~-~~l~~G~~l~i~~~~ 64 (66)
.....+|+|++|||||+||++|++++.+|+++|++.. +.|++||+|.|+..+
T Consensus 59 ~~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~ 111 (167)
T 2l9y_A 59 GGGTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKG 111 (167)
T ss_dssp CCSCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCC
T ss_pred CCCCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCC
Confidence 3455789999999999999999999999999999987 899999999998653
No 4
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.36 E-value=9.6e-13 Score=81.33 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=43.7
Q ss_pred cEEEEccCCcHHHHH-HHhC--CCHHHHHHhhCCCCCCcCCCCEEEEccc
Q 037180 17 RIVEILRGDTLWGFS-MKCG--VSIDAIKEANGLSGDTIYYSIICIFLCL 63 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia-~~~~--~~~~~l~~~N~l~~~~l~~G~~l~i~~~ 63 (66)
.+|+|++|||||.|| ++|+ +++++|+++|++....|++||.|.||..
T Consensus 79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~ 128 (212)
T 4eby_A 79 FSYSVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVN 128 (212)
T ss_dssp EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEEE
T ss_pred eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcCC
Confidence 579999999999999 7999 9999999999987789999999999964
No 5
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.32 E-value=1.8e-12 Score=80.14 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=43.2
Q ss_pred cEEEEccCCcHHHHHHHhCCCH--------HHHHHhh-CCC-CCCcCCCCEEEEccc
Q 037180 17 RIVEILRGDTLWGFSMKCGVSI--------DAIKEAN-GLS-GDTIYYSIICIFLCL 63 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~--------~~l~~~N-~l~-~~~l~~G~~l~i~~~ 63 (66)
..|+|++|||||.||++|++++ ++|+++| ++. .+.|.+||.|.||..
T Consensus 10 ~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~ 66 (212)
T 4eby_A 10 ASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFP 66 (212)
T ss_dssp EEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEecc
Confidence 4799999999999999999998 9999999 886 588999999999953
No 6
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=99.10 E-value=9.9e-11 Score=69.81 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=41.3
Q ss_pred cEEEEccCCcHHHHHHHhCCCHHHHHHhhCCCCCCcCCCCEEEEcc
Q 037180 17 RIVEILRGDTLWGFSMKCGVSIDAIKEANGLSGDTIYYSIICIFLC 62 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~~~l~~G~~l~i~~ 62 (66)
.+|+|++||||++||++|++...+|+++|+..+..+.+|+.+.|+-
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCccCCCccccCcc
Confidence 4799999999999999999999999999986555678999999874
No 7
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.00 E-value=2.8e-10 Score=74.52 Aligned_cols=49 Identities=18% Similarity=0.078 Sum_probs=42.9
Q ss_pred CccEEEEccCCcHHHHHHHhCCCHHHHHHhhCCC-----CCCcCCCCEEEEccc
Q 037180 15 SCRIVEILRGDTLWGFSMKCGVSIDAIKEANGLS-----GDTIYYSIICIFLCL 63 (66)
Q Consensus 15 ~~~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~-----~~~l~~G~~l~i~~~ 63 (66)
.-..|+|++|||||+|+++||++.++|.++|++. ...|++||.|.|+..
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~ 59 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMD 59 (361)
T ss_dssp -CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEEC
T ss_pred CceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEEC
Confidence 3457999999999999999999999999999764 367999999999864
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.32 E-value=5.3e-07 Score=58.99 Aligned_cols=46 Identities=4% Similarity=-0.053 Sum_probs=38.8
Q ss_pred cEEEEccCCcHHHHHHHhCCCHHHHHHhhCCCC------CCcCCCCEEEEcc
Q 037180 17 RIVEILRGDTLWGFSMKCGVSIDAIKEANGLSG------DTIYYSIICIFLC 62 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~------~~l~~G~~l~i~~ 62 (66)
..|.++.|||||.+|++||++...|+++|++.. ..|++||++.|..
T Consensus 101 ~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~ 152 (361)
T 2gu1_A 101 ILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILV 152 (361)
T ss_dssp EEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEE
T ss_pred EEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEE
Confidence 368899999999999999999999999997632 4599999998853
No 9
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.84 E-value=6e-05 Score=49.77 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=40.4
Q ss_pred cEEEEccCCcHHHHHHHhCCCHHHHHHhhCCC-----CCCcCCCCEEEEccc
Q 037180 17 RIVEILRGDTLWGFSMKCGVSIDAIKEANGLS-----GDTIYYSIICIFLCL 63 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~-----~~~l~~G~~l~i~~~ 63 (66)
..|+|++||||..|-+++|++..++.+++... ...|++||.|.+...
T Consensus 15 ~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~ 66 (371)
T 3slu_A 15 VQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVG 66 (371)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEEC
Confidence 46899999999999999999999999987542 378999999998654
No 10
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=92.72 E-value=0.00039 Score=41.29 Aligned_cols=30 Identities=10% Similarity=-0.167 Sum_probs=24.6
Q ss_pred cEEEEccCCcHHHHHHHhCCCHHHHHHhhC
Q 037180 17 RIVEILRGDTLWGFSMKCGVSIDAIKEANG 46 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~~l~~~N~ 46 (66)
..|.|++|||||.||++||......+.+|.
T Consensus 126 ~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~ 155 (167)
T 2l9y_A 126 DVRLVDGGKVLEAELRYSGGWNRSRIYLDE 155 (167)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEECGGG
T ss_pred eEEEeCCcCChHHHHHHcCCceEEEEEccc
Confidence 468999999999999999977666666654
No 11
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.20 E-value=0.48 Score=22.66 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=20.5
Q ss_pred ccCCc----HHHHHHHhCCCHHHHHHhh
Q 037180 22 LRGDT----LWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 22 ~~GdT----l~~Ia~~~~~~~~~l~~~N 45 (66)
..|.+ +..+|++||++...|..|=
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 45777 9999999999999988873
No 12
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=88.93 E-value=0.3 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.3
Q ss_pred EEccCCcHHHHHHHhCCCHHHH----HHhh
Q 037180 20 EILRGDTLWGFSMKCGVSIDAI----KEAN 45 (66)
Q Consensus 20 ~V~~GdTl~~Ia~~~~~~~~~l----~~~N 45 (66)
.+.++|||.++|++.|++++.| .++|
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN 120 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQ 120 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3567899999999999997764 4667
No 13
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=87.05 E-value=0.93 Score=19.83 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-+...||+.+|++...+..+
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999988765
No 14
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=87.05 E-value=0.57 Score=24.40 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHhh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
|.++..||++||++...|.+|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 8899999999999999988774
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.75 E-value=0.77 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.6
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|.++..||++||++...|.+|
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999888776
No 16
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=85.89 E-value=0.87 Score=24.46 Aligned_cols=24 Identities=8% Similarity=-0.276 Sum_probs=21.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHhh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
..+.++.++|++|+++...|..|-
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~ 70 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWR 70 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHH
Confidence 446699999999999999999886
No 17
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=84.78 E-value=1 Score=20.03 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=20.9
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+..|.+...||+.+|++...+.++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 356899999999999999998876
No 18
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=79.34 E-value=2.7 Score=19.26 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..+||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999887754
No 19
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=78.16 E-value=0.88 Score=24.07 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=18.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHhh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
|.++..||++||++...|..|=
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHH
Confidence 3689999999999999988773
No 20
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=77.03 E-value=11 Score=24.70 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHhhCC-----CCCCcCCCCEEEEc
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEANGL-----SGDTIYYSIICIFL 61 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~N~l-----~~~~l~~G~~l~i~ 61 (66)
.-.++|+..+.+.|++...+++++.+ +-..|++|+.+.|.
T Consensus 115 ~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~ 159 (371)
T 3slu_A 115 VVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLI 159 (371)
T ss_dssp ECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEE
T ss_pred EEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEE
Confidence 44799999999999999999998853 22458999998874
No 21
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=74.54 E-value=3.3 Score=23.24 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
|.+...+|++||++...+.+.
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 889999999999998887653
No 22
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=74.04 E-value=3.2 Score=21.00 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.6
Q ss_pred cCCcHHHHHHHhCCCHHHHH-Hhh
Q 037180 23 RGDTLWGFSMKCGVSIDAIK-EAN 45 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~-~~N 45 (66)
+++||...++.+|+++++|. ++|
T Consensus 39 ~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 39 QNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp GGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Confidence 57999999999999999877 444
No 23
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=71.73 E-value=4.7 Score=20.20 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.1
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|+..+|++.|++...|-++
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 67889999999999999888865
No 24
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=71.12 E-value=6 Score=18.95 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.1
Q ss_pred cCCcHHHHHHHhCCCHHHHHHh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.|-|+.+||+.+|++...+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 6899999999999999887643
No 25
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=70.94 E-value=5.1 Score=20.91 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=19.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|.+...||+++|++...+.+|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998877655
No 26
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=69.60 E-value=5.7 Score=20.21 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.7
Q ss_pred cCCcHHHHHHHhCCCHHHHH-Hhh
Q 037180 23 RGDTLWGFSMKCGVSIDAIK-EAN 45 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~-~~N 45 (66)
.++||...++.+|+++++|. ++|
T Consensus 37 ~~~tLeeA~~~hgiD~d~ll~eLn 60 (76)
T 2k53_A 37 MGESIEDACAVHGIDADKLVKELN 60 (76)
T ss_dssp CCSBHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Confidence 47999999999999999876 455
No 27
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.49 E-value=7.7 Score=18.25 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-+...||+.+|++...+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~ 50 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRS 50 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999888764
No 28
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.99 E-value=8 Score=18.74 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.4
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.|-|+.+||+..|++...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 588999999999999888654
No 29
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=66.75 E-value=6.7 Score=21.53 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|.+...||+++|++...+.+|
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw 68 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998887766
No 30
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=66.15 E-value=1 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=28.0
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCCCC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSGDT 51 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~~~ 51 (66)
|.|-...||+.||++.-.+.++|.+..++....
T Consensus 44 y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K 76 (113)
T 2dgz_A 44 AILATNKILVDMAKMRPTTVENVKRIDGVSEGK 76 (113)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTG
T ss_pred CeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHH
Confidence 556677899999999999999999999886643
No 31
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=66.00 E-value=6 Score=21.52 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=20.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHhh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
.-+-|+.+.+++|+++.++|.+|=
T Consensus 48 ~g~lS~~EAa~ry~Is~~ei~~W~ 71 (101)
T 2oa4_A 48 YGLITLAEAKQTYGLSDEEFNSWV 71 (101)
T ss_dssp HTTCCHHHHHHTTCSSHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Confidence 446789999999999999999884
No 32
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=65.81 E-value=6.7 Score=21.00 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=20.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|.+...||+.+|++...+.++
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~ 42 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVY 42 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888765
No 33
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=62.63 E-value=10 Score=17.97 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=18.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
..|-+..+||+++|++...+..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~ 45 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRN 45 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHH
Confidence 5789999999999999877653
No 34
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.14 E-value=8.8 Score=19.58 Aligned_cols=20 Identities=10% Similarity=-0.105 Sum_probs=16.4
Q ss_pred CcHHHHHHHhCCCHHHHHHh
Q 037180 25 DTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~ 44 (66)
-++.+||++|+++...+.+.
T Consensus 17 vsv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHH
Confidence 47889999999998887643
No 35
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=60.96 E-value=7.1 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.5
Q ss_pred CcHHHHHHHhCCCHHHHHHh
Q 037180 25 DTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.+..+++|||.+++++..+
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 35778999999999998765
No 36
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=60.88 E-value=12 Score=18.84 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.4
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.|-|+..||+..|++...+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~ 57 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 688999999999999888664
No 37
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=59.52 E-value=11 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=20.7
Q ss_pred CccEEEEccCCcHHHHHHHhCCCHH
Q 037180 15 SCRIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 15 ~~~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
...++.+.+|+||-+.+.+.|+.+.
T Consensus 15 ~~~~v~~~~g~tlL~aa~~~Gi~i~ 39 (113)
T 3ah7_A 15 EGLTVEVKPGTNILELAHDHHIEME 39 (113)
T ss_dssp TCEEEECCTTCBHHHHHHHTTCCCC
T ss_pred CCeEEEECCCCcHHHHHHHcCCCCC
Confidence 4467889999999999999888643
No 38
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=58.73 E-value=12 Score=19.04 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=19.5
Q ss_pred cEEEEccCCcHHHHHHHhCCCHH
Q 037180 17 RIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
.++.+.+|+||-+.+.+.|+.+.
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~i~ 35 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYDLP 35 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCCC
Confidence 57889999999999999887643
No 39
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=58.15 E-value=11 Score=17.26 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=18.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
..|-+..+||+..|++...+..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVET 32 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHH
Confidence 4688999999999999887664
No 40
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=57.83 E-value=12 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.5
Q ss_pred ccEEEEccCCcHHHHHHHhCCCHHH
Q 037180 16 CRIVEILRGDTLWGFSMKCGVSIDA 40 (66)
Q Consensus 16 ~~~y~V~~GdTl~~Ia~~~~~~~~~ 40 (66)
..++.+.+|+||.+.+.+.|+.+..
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi~i~~ 39 (98)
T 1frd_A 15 DTTIEIDEETTILDGAEENGIELPF 39 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTCCCCC
T ss_pred CEEEEeCCCCcHHHHHHHcCCCccc
Confidence 4578899999999999998876443
No 41
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=57.83 E-value=12 Score=20.53 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.6
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHhhC
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEANG 46 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~N~ 46 (66)
...|-|...|++..|++...|.+.++
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 35799999999999999999988763
No 42
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=57.67 E-value=11 Score=20.70 Aligned_cols=24 Identities=0% Similarity=-0.040 Sum_probs=18.9
Q ss_pred EccCC---cHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGD---TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~Gd---Tl~~Ia~~~~~~~~~l~~~ 44 (66)
.++|+ +...+|++||++...+.++
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 46788 5679999999998877644
No 43
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=56.82 E-value=13 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=20.6
Q ss_pred CccEEEEccCCcHHHHHHHhCCCHH
Q 037180 15 SCRIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 15 ~~~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
...++.+.+|+||-+.+.+.|+.+.
T Consensus 15 ~~~~~~~~~g~tlL~a~~~~gi~i~ 39 (111)
T 1i7h_A 15 DGAVLEANSGETILDAALRNGIEIE 39 (111)
T ss_dssp TCEEEECCTTCBHHHHHHHTTCCCC
T ss_pred CCeEEEeCCCCcHHHHHHHcCCCCc
Confidence 3457889999999999999887643
No 44
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=56.17 E-value=15 Score=18.94 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.1
Q ss_pred cCC--cHHHHHHHhCCCHHHHH
Q 037180 23 RGD--TLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 23 ~Gd--Tl~~Ia~~~~~~~~~l~ 42 (66)
+|+ |.-.||+++|++-..+-
T Consensus 26 ~~~~~Ta~~IAkkLg~sK~~vN 47 (75)
T 1sfu_A 26 TNDYTTAISLSNRLKINKKKIN 47 (75)
T ss_dssp TTCEECHHHHHHHTTCCHHHHH
T ss_pred CCcchHHHHHHHHHCCCHHHHH
Confidence 454 88999999999987654
No 45
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=56.00 E-value=15 Score=19.53 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=18.8
Q ss_pred EccCC---cHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGD---TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~Gd---Tl~~Ia~~~~~~~~~l~~~ 44 (66)
..+|+ +...+|++||++...+.++
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 46787 5569999999998776644
No 46
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=56.00 E-value=11 Score=19.74 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=16.6
Q ss_pred CcHHHHHHHhCCCHHHHHHh
Q 037180 25 DTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~ 44 (66)
-++.+||++|+++...+.+.
T Consensus 17 vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHH
Confidence 46789999999999887754
No 47
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=55.49 E-value=16 Score=17.55 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=18.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-+..+||+.+|++...+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~ 50 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEV 50 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999887664
No 48
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=54.86 E-value=9.4 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=21.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHhh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
..|.+...||+++|++...+.+|=
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl 62 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKIL 62 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999888774
No 49
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=54.80 E-value=15 Score=19.09 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.9
Q ss_pred cEEEEccCCcHHHHHHHhCCCH
Q 037180 17 RIVEILRGDTLWGFSMKCGVSI 38 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~ 38 (66)
.++.+.+|+||-+.+++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNIDL 37 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTCCC
T ss_pred EEEEECCCCHHHHHHHHcCCCc
Confidence 5678899999999999988763
No 50
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=54.39 E-value=14 Score=19.38 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEccCCcHHHHHHHhCCCHH
Q 037180 18 IVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
++.+.+|+||-+.+.+.|+.+.
T Consensus 20 ~v~~~~g~tLL~aa~~~gi~i~ 41 (108)
T 2bt6_A 20 TTKGKIGDSLLDVVVQNNLDID 41 (108)
T ss_dssp EEEEETTCBHHHHHHHTTCCCT
T ss_pred EEEECCCChHHHHHHHcCCCCC
Confidence 6778999999999999998754
No 51
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=54.27 E-value=15 Score=17.81 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=16.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..| |..++|++.|++...+-+|
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~ 31 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNW 31 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHH
Confidence 346 7788888888887777665
No 52
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=54.23 E-value=17 Score=18.13 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=19.2
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
..|-+..+||++.|++...+..
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~ 55 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKV 55 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5799999999999999887663
No 53
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=53.89 E-value=14 Score=19.02 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=19.7
Q ss_pred ccEEEEccCCcHHHHHHHhCCCHH
Q 037180 16 CRIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 16 ~~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
...+.+.+|+||-+.+++.|+.+.
T Consensus 16 ~~~~~~~~g~tlL~a~~~~gi~i~ 39 (98)
T 1jq4_A 16 SLRFECRSDEDVITAALRQNIFLM 39 (98)
T ss_dssp EEEEEEESCCTHHHHHHHHTCCCC
T ss_pred cEEEEeCCCChHHHHHHHcCCCCc
Confidence 456788999999999999887643
No 54
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.95 E-value=18 Score=18.23 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.6
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-+...||+..|++...+..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~ 72 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKS 72 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4688999999999999887653
No 55
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=51.49 E-value=9.2 Score=20.80 Aligned_cols=24 Identities=17% Similarity=0.208 Sum_probs=18.6
Q ss_pred EccCCc---HHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDT---LWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdT---l~~Ia~~~~~~~~~l~~~ 44 (66)
..+|+- ...+|++||++...+.++
T Consensus 31 ~~~g~~Lps~~~La~~~~vSr~tvr~A 57 (125)
T 3neu_A 31 WKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 567874 559999999998776654
No 56
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=51.48 E-value=18 Score=20.96 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHhhC
Q 037180 24 GDTLWGFSMKCGVSIDAIKEANG 46 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~N~ 46 (66)
|-|...||++.|++...|.+|-.
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 67999999999999999998753
No 57
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=51.43 E-value=2.2 Score=22.97 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.3
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSG 49 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~ 49 (66)
|.|-...||+.||++.-.+.++|.+.+++..
T Consensus 44 ~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~ 74 (101)
T 2rrd_A 44 FNIFNTVTLKKLAESLSSDPEVLLQIDGVTE 74 (101)
T ss_dssp HHHCCHHHHHHHHHHCCCCHHHHHTSTTCCH
T ss_pred CeeECHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 4566778999999999999999998887754
No 58
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=51.36 E-value=18 Score=16.82 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.4
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.| +...+|++.|++...+-++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~ 33 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQM 33 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHH
Confidence 3557 9999999999999887765
No 59
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=50.79 E-value=7.9 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.7
Q ss_pred EccCCcHHHHHHHhCC-CHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGV-SIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~-~~~~l~~~ 44 (66)
+..|.+|.+|++.+|+ +...+.+|
T Consensus 25 i~~G~sl~~i~~~~~~ps~~T~~~W 49 (140)
T 4dyq_A 25 LSSGESLLKVCKRPGMPDKSTVFRW 49 (140)
T ss_dssp HHTTCCHHHHHTSTTCCCHHHHHHH
T ss_pred HHCCCcHHHHHhcCCCCCHHHHHHH
Confidence 5689999999999999 78877766
No 60
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=50.23 E-value=11 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEccCCcH---HHHHHHhCCCHHHHHHh
Q 037180 20 EILRGDTL---WGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 20 ~V~~GdTl---~~Ia~~~~~~~~~l~~~ 44 (66)
..++||-| ..+|++||++...+.++
T Consensus 31 ~l~pG~~LPser~La~~~gVSr~tVReA 58 (134)
T 4ham_A 31 VLQEGEKILSIREFASRIGVNPNTVSKA 58 (134)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHCCCHHHHHHH
Confidence 36789866 58999999998776654
No 61
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=50.22 E-value=18 Score=18.36 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=19.9
Q ss_pred cCCcHHHHHHHhCCCHHHHH-HhhC
Q 037180 23 RGDTLWGFSMKCGVSIDAIK-EANG 46 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~-~~N~ 46 (66)
..+||...|+++|+++++|. ++|.
T Consensus 48 ~~~TL~~aa~~~gid~d~l~~~L~~ 72 (81)
T 2fi0_A 48 RKVSLKQGSKLAGTPMDKIVRTLEA 72 (81)
T ss_dssp HHCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999999877 4453
No 62
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=50.09 E-value=18 Score=16.38 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=18.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~ 34 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGI 34 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45778888999999988888766
No 63
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=50.08 E-value=17 Score=21.11 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+|+-.+.++|+++|++..++.++
T Consensus 13 ~p~~~~~dla~~l~vse~e~~~a 35 (164)
T 2ovi_A 13 EPDGTLEVVAEQYNTTLLEVVRN 35 (164)
T ss_dssp CCSSCHHHHHHHTTSCHHHHHHT
T ss_pred CcCchHHHHHHHcCCCHHHHHHh
Confidence 56788999999999999999875
No 64
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=49.86 E-value=17 Score=21.31 Aligned_cols=23 Identities=30% Similarity=0.156 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+|+-.+.++|+++|++..++.++
T Consensus 12 ~P~~~~~dla~~l~vSe~e~~~a 34 (174)
T 2ph0_A 12 NPDGTLEDIAGKYNTSLFAVVEA 34 (174)
T ss_dssp CCCSCHHHHHHHTTSCHHHHHHT
T ss_pred CcCchHHHHHHHcCCCHHHHHHh
Confidence 46788999999999999999875
No 65
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=49.81 E-value=16 Score=19.06 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.8
Q ss_pred cEEEEccCCcHHHHHHHhCCC
Q 037180 17 RIVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~ 37 (66)
.++.+.+|+||-+.+.+.|+.
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 567889999999999999887
No 66
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=49.78 E-value=19 Score=18.98 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEEccCCcHHHHHHHhCCCH
Q 037180 18 IVEILRGDTLWGFSMKCGVSI 38 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~~~~~ 38 (66)
+..+.+|+||-+.+.+.|+.+
T Consensus 19 ~~~~~~g~tlL~aa~~~gi~i 39 (109)
T 2y5c_A 19 PVSGRVGDNVLHLAQRHGVDL 39 (109)
T ss_dssp EEEEETTCBHHHHHHHTTCCC
T ss_pred EEEECCCCcHHHHHHHcCCCC
Confidence 467899999999999988764
No 67
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=49.49 E-value=15 Score=18.71 Aligned_cols=22 Identities=9% Similarity=0.230 Sum_probs=19.3
Q ss_pred EccC-CcHHHHHHHhCCCHHHHH
Q 037180 21 ILRG-DTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 21 V~~G-dTl~~Ia~~~~~~~~~l~ 42 (66)
|+.| -+....|+.||++-..|.
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~ 48 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHH
T ss_pred HHcCCccHHHHHHHhCCChHHHH
Confidence 6778 699999999999988877
No 68
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=49.44 E-value=22 Score=17.69 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEccCCcHHHHHHHhCCCHHHHH
Q 037180 20 EILRGDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 20 ~V~~GdTl~~Ia~~~~~~~~~l~ 42 (66)
.|.+|-|..++|.+|+.+.+.-.
T Consensus 14 s~~QGMTaGEVAA~f~w~Le~ar 36 (68)
T 3i71_A 14 SVRQGMTAGEVAAHFGWPLEKAR 36 (68)
T ss_dssp HCTTCBCHHHHHHHHTCCHHHHH
T ss_pred HHhccccHHHHHHHhCCcHHHHH
Confidence 36789999999999999987644
No 69
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=49.12 E-value=10 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.1
Q ss_pred ccCCcHHHHHHHhCCCHHHH----HHhhC
Q 037180 22 LRGDTLWGFSMKCGVSIDAI----KEANG 46 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l----~~~N~ 46 (66)
.+.|||.++|+++|++++.| .++|.
T Consensus 442 ~~~~tl~ela~~~gi~~~~l~~tv~~yn~ 470 (571)
T 1y0p_A 442 PTADSLVKLGKMEGIDGKALTETVARYNS 470 (571)
T ss_dssp CEESSHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 46899999999999998754 46663
No 70
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=48.49 E-value=22 Score=16.80 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=15.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|...+|++.|++...+.++
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~ 40 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAM 40 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34667777777777777776655
No 71
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=48.46 E-value=2.4 Score=21.92 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.4
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSG 49 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~ 49 (66)
|.|-...||..||++.-.+.++|...+++..
T Consensus 29 ~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~ 59 (85)
T 2kv2_A 29 FNIFNTVTLKKLAESLSSDPEVLLQIDGVTE 59 (85)
T ss_dssp HHHCCHHHHHHHHHHCCSCHHHHHTSSSCCH
T ss_pred ceeECHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 4455678999999999999999998887754
No 72
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=48.35 E-value=21 Score=18.38 Aligned_cols=23 Identities=4% Similarity=-0.023 Sum_probs=19.3
Q ss_pred cEEEEccCCcHHHHHHHhCCCHH
Q 037180 17 RIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
.++.+.+|+||-+.+.+.|+.+.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~i~ 36 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGIDLP 36 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCcc
Confidence 56788999999999999887643
No 73
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=48.28 E-value=21 Score=18.38 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=19.9
Q ss_pred ccEEEEccCCcHHHHHHHhCCCHH
Q 037180 16 CRIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 16 ~~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
..++.+.+|+||-+.+++.|+.+.
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi~i~ 38 (98)
T 1czp_A 15 KHEIEVPDDEYILDAAEEQGYDLP 38 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTCCCC
T ss_pred cEEEEeCCCCCHHHHHHHcCCCcc
Confidence 357788999999999999887644
No 74
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=48.24 E-value=15 Score=19.57 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=17.4
Q ss_pred ccCCcHH-HHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLW-GFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~-~Ia~~~~~~~~~l~~~ 44 (66)
..|.+.. .+|++||++...|.++
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~ 45 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTI 45 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHH
Confidence 4566654 8999999998777654
No 75
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=48.18 E-value=21 Score=20.47 Aligned_cols=23 Identities=13% Similarity=0.071 Sum_probs=19.9
Q ss_pred cCCcHHHHHHHhCCCHHHHHHhh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
-|..|..+|+..|++.+++.+.=
T Consensus 13 ~g~DL~~vA~~~gls~~evi~~h 35 (141)
T 2zp2_A 13 FGPDLEEVAKINQLSPEEVIDIH 35 (141)
T ss_dssp TCTTHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHH
Confidence 36789999999999999988764
No 76
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=47.96 E-value=21 Score=18.39 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=19.2
Q ss_pred cEEEEccCCcHHHHHHHhCCCHH
Q 037180 17 RIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
.++.+.+|+||-+.+++.|+.+.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~i~ 36 (98)
T 1iue_A 14 KKIECNEDEYILDASERQNVELP 36 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCCC
Confidence 56788999999999999887643
No 77
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=47.88 E-value=22 Score=18.81 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.0
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.|-|+..||+.+|++...+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~ 58 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQ 58 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 578999999999999887654
No 78
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=47.82 E-value=19 Score=20.09 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.4
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHhhC
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEANG 46 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~N~ 46 (66)
+..|-|..+||++.|++...|-+.++
T Consensus 72 L~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 72 IKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 35689999999999999999988763
No 79
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=47.72 E-value=2 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=25.1
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSG 49 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~ 49 (66)
|.|-...||+.||++.-.+.++|.+..++..
T Consensus 37 y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~ 67 (103)
T 2e1f_A 37 AILATNKILVDMAKMRPTTVENVKRIDGVSE 67 (103)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHTTSTTCCH
T ss_pred CeeECHHHHHHHHHhCCCCHHHHhcCCCCCH
Confidence 4456678999999999999999988877653
No 80
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=47.64 E-value=22 Score=19.01 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-+...||+.+|++...+..
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~ 143 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDN 143 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHH
Confidence 4688999999999999887653
No 81
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=47.32 E-value=23 Score=17.45 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCHHHHHHh
Q 037180 27 LWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~~ 44 (66)
+..++++||++.+++..+
T Consensus 28 I~~~a~kygV~kdeV~~~ 45 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKL 45 (59)
T ss_dssp HHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 568999999999987643
No 82
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=47.26 E-value=24 Score=17.14 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHh
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
++.+.|-|..++|++.|++...+.++
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~ 43 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSI 43 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 44566778888888888887777766
No 83
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=47.22 E-value=22 Score=16.64 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=18.6
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
...|-|..++|++.|++...+.++
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~ 43 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRW 43 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 356778888888888888877765
No 84
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=46.81 E-value=22 Score=17.24 Aligned_cols=19 Identities=21% Similarity=0.073 Sum_probs=15.5
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
|+.+||++-|++...+-++
T Consensus 2 T~~diA~~aGVS~sTVSrv 20 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYV 20 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 6789999999998887654
No 85
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=46.78 E-value=20 Score=18.66 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=18.6
Q ss_pred cEEEEccCCcHHHHHHHhCCC
Q 037180 17 RIVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~ 37 (66)
.++.+.+|+||-+.+.+.|+.
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 13 HEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 577889999999999998876
No 86
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=46.40 E-value=18 Score=19.12 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=17.9
Q ss_pred ccCC---cHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGD---TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~Gd---Tl~~Ia~~~~~~~~~l~~~ 44 (66)
++|+ +...||++||++...+.++
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~a 63 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNA 63 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHH
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHH
Confidence 5565 6789999999998776643
No 87
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.35 E-value=25 Score=18.83 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=18.6
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-|...||+.+|++...+..
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~ 57 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYD 57 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999887653
No 88
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=46.29 E-value=20 Score=18.27 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=19.1
Q ss_pred cEEEEccCCcHHHHHHHhCCCHH
Q 037180 17 RIVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
.++.+.+|+||-+.+.+.|+.+.
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi~i~ 34 (94)
T 1awd_A 12 ETIECPEDTYILDAAEEAGLDLP 34 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTCCCC
T ss_pred EEEEECCCCcHHHHHHHcCCCCC
Confidence 56788999999999999887643
No 89
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=45.94 E-value=16 Score=18.19 Aligned_cols=36 Identities=8% Similarity=-0.122 Sum_probs=28.0
Q ss_pred cHHHHHHHhCCCHHHHHHhhCCC---CCCcCCCCEEEEc
Q 037180 26 TLWGFSMKCGVSIDAIKEANGLS---GDTIYYSIICIFL 61 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N~l~---~~~l~~G~~l~i~ 61 (66)
|+.+.|+-+|++...+.++-.-. ...++.|..++|+
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~lI~ 56 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIK 56 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEEEE
Confidence 67799999999999888775432 2457889998875
No 90
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.69 E-value=22 Score=16.74 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=18.9
Q ss_pred EEccCCcHHHHHHHhCCCHHHHHHh
Q 037180 20 EILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 20 ~V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..+.|-|..++|++.|++...+.++
T Consensus 17 r~~~glsq~~lA~~~gis~~~is~~ 41 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDKNKTTVSKW 41 (73)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456778888888888888777765
No 91
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.02 E-value=28 Score=17.75 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=19.2
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
..|-+..+||++.|++...+..
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~ 61 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKN 61 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 6799999999999999887664
No 92
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=44.48 E-value=10 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.3
Q ss_pred CCcHHHHHHHhCCCHHHH----HHhh
Q 037180 24 GDTLWGFSMKCGVSIDAI----KEAN 45 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l----~~~N 45 (66)
+|||.++|++.|++.+.| .++|
T Consensus 385 adtleeLA~~~g~~~~~l~~tv~~yN 410 (510)
T 4at0_A 385 AETVEELESDMGLPAGALQSTVEVYN 410 (510)
T ss_dssp ESSHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 699999999999996554 5677
No 93
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=44.43 E-value=16 Score=18.84 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=21.2
Q ss_pred EccCC---cHHHHHHHhCCCHHHHHHh-hCCCC
Q 037180 21 ILRGD---TLWGFSMKCGVSIDAIKEA-NGLSG 49 (66)
Q Consensus 21 V~~Gd---Tl~~Ia~~~~~~~~~l~~~-N~l~~ 49 (66)
..+|+ +..+||++||++...+.++ ..|..
T Consensus 29 l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 29 LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666 6789999999998887754 34443
No 94
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=44.32 E-value=14 Score=16.32 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=15.6
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
++..+|+..|++..++.+.
T Consensus 4 rv~~lAkel~~~~k~l~~~ 22 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQ 22 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4578999999999988764
No 95
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=44.25 E-value=24 Score=16.20 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=16.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 34667777888888887777665
No 96
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=43.67 E-value=31 Score=17.22 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=12.3
Q ss_pred cCCcHHHHHHHhCCCHHHHHHh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.|-|..++|++.|++...+.++
T Consensus 21 ~glsq~~lA~~~gis~~~is~~ 42 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTW 42 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3555556666666665555444
No 97
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=43.12 E-value=27 Score=16.38 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.2
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEV 43 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 45677788888888887777665
No 98
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=43.06 E-value=24 Score=16.99 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=15.5
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
-++.+||+++|++...+.+
T Consensus 26 ~s~~eLA~~lglsr~tv~~ 44 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQ 44 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHH
Confidence 4788999999999877654
No 99
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=42.92 E-value=15 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.7
Q ss_pred ccCCcHHHHHHHhCCCHHHHH----Hhh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIK----EAN 45 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~----~~N 45 (66)
.+.||+.++|+++|++++.|. ++|
T Consensus 437 ~~~~tl~eLa~~~gi~~~~l~~tv~~yn 464 (566)
T 1qo8_A 437 YKGDTVEQLAKSTGMKVADLAKTVSDYN 464 (566)
T ss_dssp EEESSHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467999999999999987644 566
No 100
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=42.54 E-value=25 Score=16.80 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=9.4
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
|-|..++|++.|++...+.+
T Consensus 15 glsq~~lA~~~gis~~~i~~ 34 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCN 34 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH
Confidence 44444455555554444433
No 101
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=42.34 E-value=27 Score=16.18 Aligned_cols=23 Identities=9% Similarity=0.110 Sum_probs=18.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~ 46 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGV 46 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45778888888888888887765
No 102
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=42.24 E-value=26 Score=15.91 Aligned_cols=23 Identities=22% Similarity=-0.047 Sum_probs=18.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~ 38 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQW 38 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 45778888999999998888766
No 103
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=42.24 E-value=30 Score=18.76 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.2
Q ss_pred EccCCcHHHHHHHh-CCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKC-GVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~-~~~~~~l~~~ 44 (66)
...|.|...|+..| .++.+++..+
T Consensus 61 l~~G~s~eeIl~~yP~Lt~edI~aA 85 (106)
T 2ga1_A 61 RQQGAPDKELLANYPGLTAEDLSAA 85 (106)
T ss_dssp HHTTCCHHHHHHHSTTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHCCCCCHHHHHHH
Confidence 35689999999999 8888887653
No 104
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=42.24 E-value=33 Score=18.25 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.1
Q ss_pred ccCCcHHHHHHHhCCCHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~ 42 (66)
-.|-+...||+.+|++...+.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~ 59 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVY 59 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 468899999999999988765
No 105
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=41.98 E-value=3.7 Score=21.39 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.3
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSG 49 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~ 49 (66)
|.|-+..+|..||++.-.+.++|....++..
T Consensus 35 ~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~ 65 (89)
T 1wud_A 35 YVVFNDATLIEMAEQMPITASEMLSVNGVGM 65 (89)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHHTSTTCCH
T ss_pred ceeeCHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 4566678999999999999999998877643
No 106
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=41.85 E-value=20 Score=17.78 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=16.5
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
+..++|+.+|+++..|..|
T Consensus 7 ~i~e~A~~~gvs~~tlR~y 25 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAW 25 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4568999999999999877
No 107
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.85 E-value=28 Score=17.67 Aligned_cols=20 Identities=25% Similarity=-0.019 Sum_probs=15.6
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.-++.++|+.+|++...|.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r 38 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSI 38 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHH
Confidence 34788999999888877654
No 108
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=41.47 E-value=25 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.1
Q ss_pred cEEEEccCCcHHHHHHHhCCC
Q 037180 17 RIVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~ 37 (66)
.++.+.+|+||-+.+.+.|+.
T Consensus 13 ~~~~~~~g~tll~a~~~~gi~ 33 (104)
T 3lxf_A 13 TEIQAEPGLSLMEALRDAGID 33 (104)
T ss_dssp EEEECCTTSBHHHHHHHTTCT
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 467789999999999998876
No 109
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=41.39 E-value=28 Score=17.86 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=15.6
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.-++.++|+.+|++...|.+
T Consensus 18 ~~~~~~lA~~~~~s~~~l~r 37 (108)
T 3mn2_A 18 PITIEKLTALTGISSRGIFK 37 (108)
T ss_dssp CCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
Confidence 35788999999888777664
No 110
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=41.38 E-value=15 Score=18.01 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.7
Q ss_pred CcHHHHHHHhCCCHHHHHHh
Q 037180 25 DTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~ 44 (66)
+++..||+.+|+++++|...
T Consensus 58 ~~l~~ia~~l~v~~~~l~~~ 77 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVAAV 77 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHhcc
Confidence 56889999999999998753
No 111
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=41.16 E-value=19 Score=21.64 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.6
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
..|.+||+.||+.+..+..
T Consensus 171 ~yL~EIA~ey~V~w~~~~~ 189 (193)
T 3ggy_A 171 LYLKEIAKTYDVPYSKLEN 189 (193)
T ss_dssp HHHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHcCCCCCCccc
Confidence 3578999999999987753
No 112
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=41.10 E-value=21 Score=17.32 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=13.2
Q ss_pred HHHHHhCCCHHHHHHhh
Q 037180 29 GFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 29 ~Ia~~~~~~~~~l~~~N 45 (66)
.-|++.|++++++.+.=
T Consensus 20 ~~Ak~lGlsleEIrefL 36 (57)
T 1b0n_B 20 VEAKEANISPEEIRKYL 36 (57)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 34788999999987653
No 113
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=40.95 E-value=33 Score=17.49 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=20.1
Q ss_pred EEccCCcHHHHHHHhCCCHHHHHHhh
Q 037180 20 EILRGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 20 ~V~~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
..+.|-|..++|++.|++...+.++-
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE 58 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLG 58 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34678888888888888888877663
No 114
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=40.87 E-value=28 Score=15.89 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=16.1
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~ 34 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQL 34 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34667777777777777777655
No 115
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=40.80 E-value=16 Score=24.68 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=20.8
Q ss_pred EccCCcHHHHHHHhCCCHHH----HHHhhC
Q 037180 21 ILRGDTLWGFSMKCGVSIDA----IKEANG 46 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~----l~~~N~ 46 (66)
+.++||+.++|+++|++++. +.++|.
T Consensus 441 ~~~~~ti~ela~~~gi~~~~l~~tv~~yn~ 470 (572)
T 1d4d_A 441 VKEGKTIEELAKQIDVPAAELAKTVTAYNG 470 (572)
T ss_dssp CEEESSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45689999999999999875 456673
No 116
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=40.79 E-value=34 Score=19.79 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=26.9
Q ss_pred cHHHHHHHhCCCHHHHHHhhCCCC-CCcCCCCEEEEcc
Q 037180 26 TLWGFSMKCGVSIDAIKEANGLSG-DTIYYSIICIFLC 62 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N~l~~-~~l~~G~~l~i~~ 62 (66)
|+.++|+..|++...+.++=+-.. ..++.|...+||.
T Consensus 33 Tv~EVAe~LgVs~srV~~LIr~G~L~AVr~Gr~~rVP~ 70 (148)
T 2kfs_A 33 DLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQ 70 (148)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHTTSCCCEEETTEEEEEG
T ss_pred cHHHHHHHhCCCHHHHHHHHHCCCceEEEECCEEEecH
Confidence 677999999999999887643332 4555677777764
No 117
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=40.74 E-value=29 Score=18.25 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.1
Q ss_pred cCCcHHHHHHHhCCCHHHHHHh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.|-|+.+||+.+|++...+-+.
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~ 40 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKD 40 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHH
Confidence 3468999999999998887654
No 118
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=40.69 E-value=19 Score=18.71 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.6
Q ss_pred cEEEEccCCcHHHHHHHhCCC
Q 037180 17 RIVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~ 37 (66)
.++.+.+|+||-+.+.+.|+.
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (105)
T 1b9r_A 13 YAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 577889999999999998886
No 119
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=40.68 E-value=11 Score=20.76 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=15.7
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~ 42 (66)
++|..||+.||++++.|.
T Consensus 60 ~~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 60 ATMAALANFFRIKAAYFT 77 (123)
T ss_dssp HHHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHHhCCCHHHHc
Confidence 679999999999988766
No 120
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=40.65 E-value=30 Score=16.85 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=17.1
Q ss_pred CcHHHHHHHhCCCHHHHHHh
Q 037180 25 DTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~ 44 (66)
-|+.+||++.|++...+-++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 48999999999998887654
No 121
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=40.34 E-value=34 Score=16.71 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=18.8
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.|-|..++|++.|++...+.++
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~ 51 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDL 51 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 355778888999989888877765
No 122
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=39.76 E-value=24 Score=19.46 Aligned_cols=19 Identities=11% Similarity=0.406 Sum_probs=16.1
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
-||.+|+.-+.+.++|...
T Consensus 11 ~LW~lA~~~NFT~~ELeSl 29 (109)
T 2fcw_A 11 DLWDLAQSANLTDKELEAF 29 (109)
T ss_dssp HHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHH
Confidence 4899999999999988753
No 123
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=39.71 E-value=26 Score=19.32 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.4
Q ss_pred cEEEEccCCcHHHHHHHhCCC
Q 037180 17 RIVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~ 37 (66)
.+..+.+|+||-+++.+.|+.
T Consensus 34 ~~v~~~~G~tLL~aa~~~gi~ 54 (126)
T 3hui_A 34 RTVEVEEGATVMEAAIRNAIP 54 (126)
T ss_dssp EEEEEETTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 467889999999999998876
No 124
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=39.70 E-value=16 Score=18.75 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.5
Q ss_pred EEEEccCCcHHHHHHHhCCC
Q 037180 18 IVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~~~~ 37 (66)
++.+.+|+||-+.+++.|+.
T Consensus 13 ~~~~~~g~tll~a~~~~gi~ 32 (93)
T 1l5p_A 13 QLKFEDDQTLFTVLTEAGLM 32 (93)
T ss_dssp EEECCTTEEHHHHHHTTTSS
T ss_pred EEEECCCChHHHHHHHcCCC
Confidence 57789999999999998876
No 125
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=39.52 E-value=33 Score=16.43 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=16.1
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 45667777777777777776655
No 126
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=39.19 E-value=3.1 Score=20.95 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.4
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSG 49 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~ 49 (66)
|.|-+..+|..||++.-.+.+++.+.+++..
T Consensus 27 ~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~ 57 (77)
T 2rhf_A 27 FVVFTNATLEALAARQPRTLAELAEVPGLGE 57 (77)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHTTSTTTCH
T ss_pred ceeeCHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 4455678899999999999999888776643
No 127
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=39.14 E-value=31 Score=17.72 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=15.4
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.-++.++|+.+|++...|.+
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r 40 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQ 40 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHH
Confidence 45788899998888777654
No 128
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.88 E-value=25 Score=17.65 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.0
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-+..+||+..|++...+..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~ 63 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKT 63 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5799999999999999887664
No 129
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=38.86 E-value=35 Score=19.38 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=19.2
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|.++..||+.+|++...+.++
T Consensus 156 ~~G~s~~~Ia~~l~is~~tv~r~ 178 (183)
T 1gdt_A 156 QQGLGASHISKTMNIARSTVYKV 178 (183)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999998877653
No 130
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=38.78 E-value=31 Score=17.86 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=15.7
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.-++.++|+.+|++...|.+
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r 42 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLER 42 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHH
Confidence 35788999999888777654
No 131
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=38.57 E-value=12 Score=20.88 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=15.7
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~ 42 (66)
++|..||+.||++++.|.
T Consensus 62 ~~l~~iA~~f~V~~~yl~ 79 (135)
T 3r1f_A 62 ATMAALANFFRIKAAYFT 79 (135)
T ss_dssp HHHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHHHhCCCHHHHc
Confidence 679999999999988776
No 132
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=38.55 E-value=31 Score=16.57 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=15.7
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 25 ~~gltq~elA~~~gis~~~is~~ 47 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKT 47 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34667777777777777766655
No 133
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=38.43 E-value=36 Score=18.49 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=20.0
Q ss_pred EccCCcHHHHHHHhCCCHHHHHH
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.+.|-++..||++-|++...+..
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~ 51 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLS 51 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHcCCCHHHHHHHcCCCHHHHHH
Confidence 57899999999999999888764
No 134
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=37.94 E-value=33 Score=18.01 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=17.2
Q ss_pred cHHHHHHHhCCCHHHHHHhh
Q 037180 26 TLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N 45 (66)
+...+|+.+|+++..|..|=
T Consensus 4 ~i~e~A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 4 QVKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999998774
No 135
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=37.75 E-value=33 Score=16.48 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=18.7
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+-++
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~ 45 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAAL 45 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 35778888999999998888776
No 136
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=37.65 E-value=25 Score=19.47 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=15.2
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
+-...||++|++++..+.+
T Consensus 49 ~LYp~IA~k~~TT~s~VEr 67 (120)
T 1fc3_A 49 VLYPDIAKKYNTTASRVER 67 (120)
T ss_dssp THHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4557899999999888654
No 137
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.48 E-value=34 Score=15.91 Aligned_cols=23 Identities=22% Similarity=-0.047 Sum_probs=16.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~ 38 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQW 38 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34667778888888887777665
No 138
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=37.11 E-value=38 Score=16.34 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=17.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~ 45 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNF 45 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 45778888888888888777654
No 139
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=36.75 E-value=14 Score=18.53 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=32.7
Q ss_pred cEEEEccCCcHHHHHHHhCCCHHHHH-HhhC--CCCCCcCCCCEEEEc
Q 037180 17 RIVEILRGDTLWGFSMKCGVSIDAIK-EANG--LSGDTIYYSIICIFL 61 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~~~l~-~~N~--l~~~~l~~G~~l~i~ 61 (66)
....+..|-|+.++-+++|+++++.. ..|+ ++.+.+..|+.+.|-
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~GD~VeIv 60 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVEVDRVKVL 60 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSCCCCEEEC
T ss_pred eeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCCCCEEEEE
Confidence 35678899999999999999887753 4464 344445559988764
No 140
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=36.62 E-value=37 Score=17.30 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=13.1
Q ss_pred cHHHHHHHhCCCHHHH
Q 037180 26 TLWGFSMKCGVSIDAI 41 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l 41 (66)
.|.++|.+|+++.++.
T Consensus 23 ~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 23 LLEDLAFQMGLRTQDA 38 (72)
T ss_dssp CHHHHHHHHCSCHHHH
T ss_pred eHHHHHHHhCCChHHH
Confidence 5789999999996663
No 141
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=36.20 E-value=37 Score=17.34 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=15.5
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.-++.++|+..|++...|.+
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r 39 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSH 39 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
Confidence 45788899998888777654
No 142
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=36.17 E-value=40 Score=19.61 Aligned_cols=24 Identities=4% Similarity=0.162 Sum_probs=20.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHhh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
..|.++..||+.+|++...+.++-
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~l 196 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRIK 196 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 469999999999999988887653
No 143
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=36.15 E-value=38 Score=16.11 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=16.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKI 43 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 44667777788888777776655
No 144
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.13 E-value=40 Score=18.24 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=18.4
Q ss_pred EccCC---cHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGD---TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~Gd---Tl~~Ia~~~~~~~~~l~~~ 44 (66)
.++|+ +...+|++||++...+.++
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~A 55 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKA 55 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 46676 5579999999998877643
No 145
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=36.00 E-value=38 Score=17.78 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=17.2
Q ss_pred cHHHHHHHhCCCHHHHHHhh
Q 037180 26 TLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N 45 (66)
+...+|+.+|+++..|..+=
T Consensus 3 ~i~e~A~~~gvs~~tLR~ye 22 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTLHHYD 22 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999998774
No 146
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=35.50 E-value=32 Score=20.34 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=18.6
Q ss_pred EccCCcH---HHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTL---WGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl---~~Ia~~~~~~~~~l~~~ 44 (66)
.++|+-| ..+|++||+|..-+.++
T Consensus 22 l~pG~~LpsE~~La~~lgVSRtpVREA 48 (239)
T 2di3_A 22 LKIGDHLPSERALSETLGVSRSSLREA 48 (239)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHCCCHHHHHHH
Confidence 5789888 37999999997665543
No 147
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=34.91 E-value=37 Score=16.61 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=18.0
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~ 50 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGAL 50 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45778888888888888877765
No 148
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=34.25 E-value=37 Score=17.14 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.8
Q ss_pred cHHHHHHHhCCCHHHHH
Q 037180 26 TLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~ 42 (66)
|+.+||+.+|++...+.
T Consensus 26 sv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVR 42 (77)
T ss_dssp EHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 67899999999976644
No 149
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=34.15 E-value=24 Score=20.11 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=16.4
Q ss_pred CCcHHHHHHHhCCCHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~ 42 (66)
.|++..+|++.|++.+++.
T Consensus 75 ~~~l~~lA~q~Gl~~~~~~ 93 (135)
T 1z67_A 75 TNAVSDLGQKLGVDTSTAS 93 (135)
T ss_dssp HHHHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHCcCHHHHH
Confidence 4779999999999998765
No 150
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=34.01 E-value=43 Score=17.54 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=16.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.-++.++|+.+|++...|.+.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~ 43 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKK 43 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 357889999999988776643
No 151
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.44 E-value=48 Score=18.91 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=18.6
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-|+..||+.+|++...+..
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~ 222 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQ 222 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHH
Confidence 4688999999999999887654
No 152
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=32.94 E-value=42 Score=17.19 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=15.3
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
++..+|+.++++.+++...
T Consensus 32 sl~~La~ll~ls~~~vE~~ 50 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKI 50 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHH
Confidence 5778999999998886543
No 153
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=32.77 E-value=37 Score=19.91 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.8
Q ss_pred EccCCcH---HHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTL---WGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl---~~Ia~~~~~~~~~l~~~ 44 (66)
.++||-| ..+|++||++...+.++
T Consensus 25 l~pG~~LPsE~eLa~~~gVSR~tVReA 51 (239)
T 1hw1_A 25 FPPGTILPAERELSELIGVTRTTLREV 51 (239)
T ss_dssp SCTTSBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 4678866 59999999997776644
No 154
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=32.48 E-value=39 Score=17.59 Aligned_cols=18 Identities=0% Similarity=-0.084 Sum_probs=14.6
Q ss_pred cHHHHHHHhCCCHHHHHH
Q 037180 26 TLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~ 43 (66)
.+..+|+.||+++++|..
T Consensus 6 I~~~Va~~f~i~~~dl~s 23 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLS 23 (94)
T ss_dssp HHHHHHHHTTCCHHHHHS
T ss_pred HHHHHHHHhCCCHHHHhC
Confidence 356789999999999874
No 155
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=32.36 E-value=57 Score=17.32 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=9.9
Q ss_pred cCCcHHHHHHHhCCCHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~ 42 (66)
.|-|..++|++.|++...|.
T Consensus 19 ~glSq~eLA~~~gis~~~is 38 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLK 38 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHH
Confidence 34455555555555544443
No 156
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=32.24 E-value=53 Score=16.56 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=7.6
Q ss_pred HHHHHHHhCCCHHHHH
Q 037180 27 LWGFSMKCGVSIDAIK 42 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~ 42 (66)
+..||+.||++++.|.
T Consensus 47 l~~ia~~l~v~~~~l~ 62 (111)
T 1b0n_A 47 LEKVSAVLDVSVHTLL 62 (111)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCcCHHHHh
Confidence 3444444455444444
No 157
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.16 E-value=46 Score=15.80 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=18.2
Q ss_pred cHHHHHHHhCCCHHHHHHhhCC
Q 037180 26 TLWGFSMKCGVSIDAIKEANGL 47 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N~l 47 (66)
|..++|+.+|++...|.+|=.-
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4568999999999999988643
No 158
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.48 E-value=55 Score=18.08 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.2
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
-.|-+..+||+..|++...+..
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~ 175 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRS 175 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHH
Confidence 3578888999999998877653
No 159
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=31.34 E-value=53 Score=17.99 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.9
Q ss_pred EEEEccCCcHHHHHHHhCCCHH
Q 037180 18 IVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
++.+.+|+||-+.+.+.|+.+.
T Consensus 39 ~v~v~~g~tlL~aa~~~Gi~i~ 60 (128)
T 1doi_A 39 SLEVNEGEYILEAAEAQGYDWP 60 (128)
T ss_dssp EEECCTTSCHHHHHHHTTCCCC
T ss_pred EEEECCCCcHHHHHHHcCCCCc
Confidence 7889999999999999887643
No 160
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=31.23 E-value=44 Score=15.32 Aligned_cols=23 Identities=17% Similarity=0.123 Sum_probs=17.4
Q ss_pred ccCCcHHHHHHHhC--CCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCG--VSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~--~~~~~l~~~ 44 (66)
+.|-|..++|++.| ++...+.++
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~ 43 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSY 43 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHH
Confidence 45777888888888 887777655
No 161
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.19 E-value=48 Score=18.19 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=17.2
Q ss_pred cHHHHHHHhCCCHHHHHHhh
Q 037180 26 TLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N 45 (66)
+...+|+.+|+++..|..+=
T Consensus 2 ~I~e~A~~~gvs~~tLR~ye 21 (135)
T 1q06_A 2 NISDVAKITGLTSKAIRFYE 21 (135)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 45689999999999998774
No 162
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=31.18 E-value=51 Score=16.04 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=16.2
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
+-+..+||+.+|++...+.+
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r 33 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARY 33 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHH
Confidence 35889999999999777554
No 163
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.06 E-value=46 Score=15.51 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=18.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHhh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
+-|-..+|++.|++...+-+|-
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3477889999999999998873
No 164
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.04 E-value=57 Score=16.56 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=19.3
Q ss_pred EccCCcHHHHHHHhCCCHHHHHH
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
+..|-+..+||++.|++...+..
T Consensus 41 ~~~G~s~~eIA~~L~iS~~TV~~ 63 (90)
T 3ulq_B 41 VEKGFTNQEIADALHLSKRSIEY 63 (90)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHH
Confidence 34799999999999999887664
No 165
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=30.87 E-value=38 Score=16.17 Aligned_cols=24 Identities=17% Similarity=-0.104 Sum_probs=17.3
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.|-|-.++|++.|++...+.+|
T Consensus 21 ~~~gltq~elA~~~gvs~~tis~~ 44 (73)
T 3fmy_A 21 KKLSLTQKEASEIFGGGVNAFSRY 44 (73)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHH
Confidence 345777778888888877777666
No 166
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.80 E-value=58 Score=16.62 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=16.6
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.|-|..++|++.|++...+.++
T Consensus 38 ~~~gltq~elA~~~gis~~~is~i 61 (99)
T 3g5g_A 38 LEKGMTQEDLAYKSNLDRTYISGI 61 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 455677777777777777766655
No 167
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=30.79 E-value=50 Score=16.70 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=17.5
Q ss_pred cEEEEccCCcHHHHHHHhCCCH
Q 037180 17 RIVEILRGDTLWGFSMKCGVSI 38 (66)
Q Consensus 17 ~~y~V~~GdTl~~Ia~~~~~~~ 38 (66)
..+.+.+|+||-+.+.+.| .+
T Consensus 13 ~~~~~~~g~tlL~a~~~~g-~i 33 (93)
T 1wri_A 13 ITFDVEPGERLIDIGSEKA-DL 33 (93)
T ss_dssp EEEEECTTSCHHHHHHHHS-CC
T ss_pred EEEEECCCCcHHHHHHHCc-CC
Confidence 5678899999999999877 53
No 168
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=30.51 E-value=55 Score=16.23 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCHHHHHHh
Q 037180 27 LWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~~ 44 (66)
...+|+..|++...+.+|
T Consensus 13 ~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 568999999999999998
No 169
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=30.48 E-value=52 Score=21.43 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+|+-...++|+++|++..++...
T Consensus 16 ~P~~~~rd~A~~lgvSEaelv~a 38 (345)
T 2j0p_A 16 NPGKYARDLATLMGISEAELTHS 38 (345)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHH
T ss_pred CcCCcHHHHHHHcCCCHHHHHHh
Confidence 56788999999999999999876
No 170
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=30.27 E-value=59 Score=16.82 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=17.2
Q ss_pred EEccCCcHHHHHHHhCCCHHHHHHh
Q 037180 20 EILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 20 ~V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..+.|-|..++|++.|++...+.++
T Consensus 30 R~~~gltq~elA~~~gis~~~is~~ 54 (114)
T 3vk0_A 30 RVNKGWSQEELARQCGLDRTYVSAV 54 (114)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456777777777777777776665
No 171
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=29.88 E-value=55 Score=16.02 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=17.9
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.|-|..++|++.|++...+.++
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~ 46 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADY 46 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 355778888888888887776654
No 172
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=29.72 E-value=46 Score=17.67 Aligned_cols=21 Identities=0% Similarity=0.098 Sum_probs=16.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.+..+|+.||+++++|..-
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~ 28 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGP 28 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSS
T ss_pred HHHHHHHHHHHCCCHHHHhCC
Confidence 345667899999999998753
No 173
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=29.48 E-value=52 Score=18.38 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.3
Q ss_pred CcHHHHHHHhCCCHHHHHHhhC
Q 037180 25 DTLWGFSMKCGVSIDAIKEANG 46 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~N~ 46 (66)
=+...+|+.+|+++..|..+=.
T Consensus 5 ~tI~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 5 WLISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHH
Confidence 3677899999999999987753
No 174
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.48 E-value=60 Score=16.91 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=18.7
Q ss_pred EEccCCcHHHHHHHhCCCHHHHHHh
Q 037180 20 EILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 20 ~V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+...|-|..++|++.|++...+.++
T Consensus 32 R~~~gltq~elA~~~gis~~~is~~ 56 (111)
T 3mlf_A 32 RTDYGLTQKELGDLFKVSSRTIQNM 56 (111)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 4456778888888888887777665
No 175
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=29.27 E-value=58 Score=16.09 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=17.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|...+|++.|++...+.++
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~ 37 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYY 37 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45777788888888887777665
No 176
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=28.62 E-value=58 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=18.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHhh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
|..|..+|+..|++.+++.+.=
T Consensus 97 gpDL~~vA~~~gLs~~evi~~H 118 (225)
T 2phc_B 97 GPDIEFVAQYNGLSVDDVIEIH 118 (225)
T ss_dssp CTTHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHh
Confidence 5689999999999999988753
No 177
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=28.35 E-value=10 Score=17.66 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.9
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
+||...|++.|++.+.|..
T Consensus 25 etlheyaqklglnqqaieq 43 (52)
T 1y66_A 25 ETLHEYAQKLGLNQQAIEQ 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHH
Confidence 6788889998888777654
No 178
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat; HET: HEM; 1.45A {Escherichia coli} SCOP: e.62.1.1 PDB: 1u9t_A
Probab=28.13 E-value=61 Score=21.27 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=20.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+|+-...++|+++|++..++..+
T Consensus 26 ~P~~~~rdlA~~LgVSEaElvaa 48 (354)
T 2hq2_A 26 NPGKYARDIAGLMNIREAELAFA 48 (354)
T ss_dssp STTCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCcHHHHHHHcCCCHHHHHHh
Confidence 56778899999999999999876
No 179
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=28.11 E-value=66 Score=17.33 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCHHHHHHhh
Q 037180 27 LWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~~N 45 (66)
+..+|+.+|++++++...-
T Consensus 54 l~~ia~~L~v~~~~l~~~~ 72 (130)
T 3fym_A 54 IRKYASVVNIEPNQLIQAH 72 (130)
T ss_dssp HHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 7788888899988887654
No 180
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=27.79 E-value=54 Score=21.97 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.3
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.|-|+..||+.+|++.+.+.+
T Consensus 394 e~~TleEIAe~LgIS~erVRq 414 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQ 414 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 578999999999999888764
No 181
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.79 E-value=65 Score=16.18 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=15.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|...+|++.|++...+.++
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~ 63 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDW 63 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 35667777777777777776665
No 182
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=27.64 E-value=62 Score=15.92 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=16.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+-++
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~ 41 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRL 41 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 34667777888888877776655
No 183
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=27.34 E-value=71 Score=16.68 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=19.7
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHh
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.+.+.|-|-..+|++.|++...+.++
T Consensus 44 ~R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 44 ARLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 34567888888888888887777665
No 184
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.31 E-value=61 Score=18.06 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=18.0
Q ss_pred CcHHHHHHHhCCCHHHHHHhh
Q 037180 25 DTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~N 45 (66)
=+...+|+.+|++...|..+=
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye 37 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYD 37 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHHH
Confidence 367799999999999998775
No 185
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=27.25 E-value=35 Score=17.70 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=14.1
Q ss_pred EEEEccCCcHHHHHHHh
Q 037180 18 IVEILRGDTLWGFSMKC 34 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~ 34 (66)
.-....||..|.+|++|
T Consensus 32 kLpyN~~dnP~~aAqkF 48 (80)
T 2k89_A 32 KLPYNTSDDPWLTAYNF 48 (80)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred ccCccCCCCHHHHHHHH
Confidence 34567899999999997
No 186
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=27.20 E-value=55 Score=16.89 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=17.7
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
+.|-|..+||++.|++...+.+
T Consensus 28 ~~g~sa~eLAk~LgiSk~aVr~ 49 (82)
T 1oyi_A 28 IEGATAAQLTRQLNMEKREVNK 49 (82)
T ss_dssp SSTEEHHHHHHHSSSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 3467889999999999877653
No 187
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=27.17 E-value=78 Score=16.88 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~ 42 (66)
..|-|-.+||+++|++-..+-
T Consensus 32 v~g~tQ~eIA~~lGiSR~~Vs 52 (101)
T 2w7n_A 32 VDGKPQATFATSLGLTRGAVS 52 (101)
T ss_dssp TTCCCHHHHHHHHTCCHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHH
Confidence 458888999999999966544
No 188
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.03 E-value=60 Score=18.03 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=17.0
Q ss_pred cHHHHHHHhCCCHHHHHHhh
Q 037180 26 TLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N 45 (66)
+...+|+.+|+++..|.-+=
T Consensus 4 ~I~e~A~~~gvs~~tLR~Ye 23 (142)
T 3gp4_A 4 NIKEASEKSGVSADTIRYYE 23 (142)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999998764
No 189
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.87 E-value=47 Score=18.39 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=18.4
Q ss_pred cCCcHHHHHHHhCCCHHHHHHh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
++-|...||++.|++..++.+.
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~ 71 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNR 71 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 4568899999999999987754
No 190
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=26.40 E-value=69 Score=16.93 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=17.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|..+||++.|++...+.+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf 59 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRL 59 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHH
Confidence 568889999999998877654
No 191
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.24 E-value=65 Score=15.93 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
+-|..+||++.|++...+.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~ 50 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINR 50 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHH
Confidence 45789999999999876553
No 192
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=26.16 E-value=67 Score=19.66 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred cCCcHHHHHHHhCCCHHHHHHhh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
.|..|..+|+..|++.+++.+.-
T Consensus 112 ~gpDL~~vA~~~GLs~~eVi~~H 134 (228)
T 3mml_B 112 DGADLHEVASLTGMTPAQVIAAH 134 (228)
T ss_dssp CCTTHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHH
Confidence 47899999999999999988764
No 193
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=26.14 E-value=66 Score=15.72 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=19.0
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
...|-|..++|++.|++...+-++
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~ 47 (86)
T 3eus_A 24 LDAGLTQADLAERLDKPQSFVAKV 47 (86)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHH
Confidence 356788888888888888877765
No 194
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=26.02 E-value=76 Score=16.35 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=18.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|..++|++.|++...+.++
T Consensus 47 ~~glsq~elA~~~gis~~~is~~ 69 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASY 69 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56788889999999988887765
No 195
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=25.92 E-value=74 Score=16.23 Aligned_cols=24 Identities=4% Similarity=-0.141 Sum_probs=18.0
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
...|-|...+|++.|++...+.++
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~ 44 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSAL 44 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 345778888888888888777665
No 196
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.92 E-value=68 Score=18.03 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=14.6
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~ 44 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQI 44 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34666677777777776665544
No 197
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.89 E-value=77 Score=16.43 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.0
Q ss_pred EccCCcHHHHHHHhCCCHHHHHH
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
+..|-+..+||++.|++...+..
T Consensus 46 ~~~G~s~~EIA~~L~iS~~TV~~ 68 (99)
T 1p4w_A 46 FAEGFLVTEIAKKLNRSIKTISS 68 (99)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHH
Confidence 35799999999999999887653
No 198
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=25.39 E-value=50 Score=17.53 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=14.6
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
-++.++|+..|++...|.+
T Consensus 28 ~sl~~lA~~~~~S~~~l~r 46 (129)
T 1bl0_A 28 LSLEKVSERSGYSKWHLQR 46 (129)
T ss_dssp CCCHHHHHHSSSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 5778888888888777654
No 199
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=25.26 E-value=65 Score=16.48 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=9.3
Q ss_pred cHHHHHHHhCCCHHHHHH
Q 037180 26 TLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~ 43 (66)
++..||+.||++++.|..
T Consensus 53 ~l~~la~~l~v~~~~l~~ 70 (114)
T 3op9_A 53 KLIRLATYFHLSIDELVG 70 (114)
T ss_dssp HHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHhCCCHHHHhc
Confidence 344555555555555543
No 200
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.21 E-value=74 Score=17.88 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=9.8
Q ss_pred cCCcHHHHHHHhCCCHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~ 42 (66)
.|-|..++|++.|++...|-
T Consensus 22 ~g~s~~~la~~~gis~~~ls 41 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVA 41 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHH
Confidence 34455555555555544443
No 201
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=25.18 E-value=68 Score=17.50 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=18.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHH
Q 037180 22 LRGDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~ 42 (66)
-.|-+..+||+..|++...+.
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~ 127 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVE 127 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 468999999999999988765
No 202
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=25.11 E-value=64 Score=16.74 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=15.5
Q ss_pred CCcHH---HHHHHhCCCHHHHHHhh
Q 037180 24 GDTLW---GFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 24 GdTl~---~Ia~~~~~~~~~l~~~N 45 (66)
||.|| .+|+++|+++++..+.+
T Consensus 60 gDvL~~l~~lA~~lgiDle~al~~k 84 (100)
T 2q73_A 60 YDVLYYVCALANIHGVNLEKTHELK 84 (100)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 45444 56788999998876543
No 203
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=24.91 E-value=67 Score=15.81 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=17.0
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 037180 23 RGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
.+-+..+||+.+|++...+.+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~ 55 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVEN 55 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 456889999999999777554
No 204
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=24.90 E-value=73 Score=16.83 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=17.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|..++|++.|++...+.+.
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf 55 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRL 55 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHH
Confidence 467889999999998887765
No 205
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.84 E-value=64 Score=19.49 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=15.7
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
|+.+||++.|++....-++
T Consensus 4 ti~dvA~~agVS~~TVSrv 22 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRV 22 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHH
Confidence 7889999999998776543
No 206
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=24.83 E-value=62 Score=18.97 Aligned_cols=18 Identities=33% Similarity=0.154 Sum_probs=15.0
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~ 42 (66)
=|..++|++|+++...+.
T Consensus 27 ~~~~~la~~~~vs~~TiR 44 (190)
T 4a0z_A 27 ITDHELSDLFQVSIQTIR 44 (190)
T ss_dssp CCHHHHHHHHTSCHHHHH
T ss_pred EeHHHHHHHHCCCHHHHH
Confidence 478899999999988655
No 207
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=24.64 E-value=51 Score=19.69 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=16.7
Q ss_pred EccCCcH---HHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTL---WGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl---~~Ia~~~~~~~~~l~~~ 44 (66)
.++||-| ..+|++||++...+.++
T Consensus 27 ~~~g~~lPse~~La~~~~vSr~tvr~A 53 (236)
T 3edp_A 27 YKTGMLMPNETALQEIYSSSRTTIRRA 53 (236)
T ss_dssp SCCCC--CCHHHHHHHTTCCHHHHHHH
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHH
Confidence 4567655 48999999997776644
No 208
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.61 E-value=90 Score=16.86 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=13.4
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
|..+..+|++.|++..+|..
T Consensus 35 G~~Wk~LAR~LGlse~dId~ 54 (115)
T 2o71_A 35 GPEWEPMVLSLGLSQTDIYR 54 (115)
T ss_dssp CTTHHHHHHHTTCCHHHHHH
T ss_pred hhhHHHHHHHcCCCHHHHHH
Confidence 66677777777777666543
No 209
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=24.59 E-value=70 Score=16.45 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=11.2
Q ss_pred cCCcHHHHHHHhCCCHHHHHHh
Q 037180 23 RGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 23 ~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
.|-|...+|++.|++...+.++
T Consensus 40 ~glsq~~lA~~~gis~~~is~~ 61 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSEL 61 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3455555555555555544443
No 210
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=24.43 E-value=57 Score=17.73 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCHHHHHH
Q 037180 27 LWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~ 43 (66)
+..||..||++.++|.+
T Consensus 95 vhEiahh~G~~~e~l~~ 111 (114)
T 3e11_A 95 VHEIAHHFGIDDERLHE 111 (114)
T ss_dssp HHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 45678889999998864
No 211
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=24.12 E-value=62 Score=19.46 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=18.6
Q ss_pred EccCCcH---HHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTL---WGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl---~~Ia~~~~~~~~~l~~~ 44 (66)
.++|+-| ..+|++||++...+.++
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr~A 56 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVRQA 56 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 5677765 79999999997776644
No 212
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=23.90 E-value=69 Score=17.89 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=12.3
Q ss_pred HHHHHHHhCCCHHHHHH
Q 037180 27 LWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~ 43 (66)
+..+|+.||++++++..
T Consensus 118 i~~~A~~y~~~~~~~~~ 134 (170)
T 2nsa_A 118 AEELAPFWGISPDRAKS 134 (170)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 45678888888877654
No 213
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=23.75 E-value=57 Score=16.80 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=31.1
Q ss_pred EEEccCCcHHHHHHHhCCCHHHHHHhhCCCC----CCcCCCCEEEEcccC
Q 037180 19 VEILRGDTLWGFSMKCGVSIDAIKEANGLSG----DTIYYSIICIFLCLS 64 (66)
Q Consensus 19 y~V~~GdTl~~Ia~~~~~~~~~l~~~N~l~~----~~l~~G~~l~i~~~~ 64 (66)
|.+-.-+--..+-++|++...+|.+.-.-++ -.+.+||.+.|-=.|
T Consensus 12 H~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 12 HEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred eEECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECC
Confidence 4444445566788899999888877654333 357889998875443
No 214
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.70 E-value=74 Score=17.89 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=18.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHhh
Q 037180 24 GDTLWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~~N 45 (66)
-=+...+|+.+|+++..|..+=
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye 32 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYE 32 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 4577899999999999998774
No 215
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.67 E-value=88 Score=16.31 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=13.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
..|-|...+|++.|++...+.++
T Consensus 23 ~~glsq~~lA~~~gis~~~is~~ 45 (126)
T 3ivp_A 23 KQGLTREQVGAMIEIDPRYLTNI 45 (126)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 44556666666666666655544
No 216
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.44 E-value=82 Score=15.87 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.4
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
-|..+||+++|++...+.+
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~ 46 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINR 46 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHH
Confidence 5789999999999776553
No 217
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.39 E-value=69 Score=19.46 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.2
Q ss_pred cHHHHHHHhCCCHHHHHHh
Q 037180 26 TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~ 44 (66)
|+.+||++.|++....-++
T Consensus 2 ti~diA~~agVS~~TVSrv 20 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHV 20 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
Confidence 6889999999997776543
No 218
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=23.34 E-value=69 Score=19.17 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=18.5
Q ss_pred EccCCcH---HHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTL---WGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl---~~Ia~~~~~~~~~l~~~ 44 (66)
.++|+-| ..+|++||++...+.++
T Consensus 28 ~~~g~~lPse~~La~~~~vSr~tvr~A 54 (243)
T 2wv0_A 28 LQPDMPLPSEREYAEQFGISRMTVRQA 54 (243)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHH
Confidence 4677655 79999999998777643
No 219
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=23.18 E-value=71 Score=15.06 Aligned_cols=34 Identities=9% Similarity=-0.199 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCCHHHHHHhhCC--CCCCcCCCCEEE
Q 037180 26 TLWGFSMKCGVSIDAIKEANGL--SGDTIYYSIICI 59 (66)
Q Consensus 26 Tl~~Ia~~~~~~~~~l~~~N~l--~~~~l~~G~~l~ 59 (66)
++.++++.+|++...+.++=.- -+..++.|....
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~g~fP~piklG~~~~ 47 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR 47 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHCCCSEESSSCEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCCCCCEEeCCCeE
Confidence 5678999999999988876532 123355565543
No 220
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=23.02 E-value=18 Score=19.92 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEEccCCcHHHHHHHhCCCHH
Q 037180 18 IVEILRGDTLWGFSMKCGVSID 39 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~~~~~~ 39 (66)
+..+.+|+||-+++.++|+.+.
T Consensus 19 ~v~~~~G~tLl~aa~~~gi~i~ 40 (123)
T 3n9z_C 19 TTKGKVGDSLLDVVVENNLDID 40 (123)
T ss_dssp ----------------------
T ss_pred EEEECCCCcHHHHHHHcCCCCC
Confidence 5567899999999999998865
No 221
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.92 E-value=84 Score=15.78 Aligned_cols=24 Identities=25% Similarity=0.070 Sum_probs=16.8
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
...|-|..++|++.|++...+-++
T Consensus 28 ~~~gltq~~lA~~~gis~~~is~~ 51 (104)
T 3cec_A 28 DDLDINTANFAEILGVSNQTIQEV 51 (104)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 345777777788888777776654
No 222
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=22.82 E-value=18 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=0.0
Q ss_pred EccCCcHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
...|.++..||+.+|++...+.++
T Consensus 155 ~~~G~s~~~Ia~~l~vs~~Tvyr~ 178 (193)
T 3uj3_X 155 LAQGIPRKQVALIYDVALSTLYKK 178 (193)
T ss_dssp ------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 467999999999999998887754
No 223
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.66 E-value=85 Score=16.93 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=13.9
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~~ 43 (66)
|..+..+|++.|++..+|..
T Consensus 35 G~~Wk~LAR~LGlse~dId~ 54 (114)
T 2of5_A 35 GPEWEPMVLSLGLSQTDIYR 54 (114)
T ss_dssp CSTHHHHHHTTTCCHHHHHH
T ss_pred hhhHHHHHHHcCCCHHHHHH
Confidence 66777777777777666554
No 224
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=22.64 E-value=97 Score=16.39 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=17.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
...-++.+||.+.|++...+.+.
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~ 113 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRL 113 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHH
Confidence 45678999999999997776543
No 225
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=22.64 E-value=25 Score=21.04 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=11.8
Q ss_pred CcHHHHHHHhCCCHH
Q 037180 25 DTLWGFSMKCGVSID 39 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~ 39 (66)
..|.+||+.||+.++
T Consensus 166 ~yL~EIA~~y~V~w~ 180 (191)
T 3frr_A 166 RYLIEIAKNYNVPYE 180 (191)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 357899999998753
No 226
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=22.63 E-value=92 Score=18.51 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=18.0
Q ss_pred EccCC---cHHHHHHHhCCCHHHHHHh
Q 037180 21 ILRGD---TLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 21 V~~Gd---Tl~~Ia~~~~~~~~~l~~~ 44 (66)
.++|+ +...+|++||++...+.++
T Consensus 23 ~~~g~~lPse~~La~~~~vSr~tvr~A 49 (239)
T 3bwg_A 23 LQQGDKLPVLETLMAQFEVSKSTITKS 49 (239)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHCCCHHHHHHH
Confidence 45677 4468999999998776643
No 227
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=21.99 E-value=84 Score=16.42 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCHHHHHHhh
Q 037180 27 LWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~~N 45 (66)
+-.+|+++|+++++..+.+
T Consensus 88 l~~lA~~lgiDle~al~~k 106 (111)
T 2oie_A 88 LVALAARCHVDLPQAVISK 106 (111)
T ss_dssp HHHHHHHTTCCHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 3356778999998877654
No 228
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=21.92 E-value=91 Score=16.45 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=15.4
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
-+..+||+++|++...+.+
T Consensus 27 ~s~~ela~~~~i~~~~v~~ 45 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQ 45 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 3778999999999877654
No 229
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.51 E-value=81 Score=16.06 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=15.8
Q ss_pred CcHHHHHHHhCCCHHHHHHh
Q 037180 25 DTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~~ 44 (66)
-+...||+++|++...+.++
T Consensus 34 ~s~~eLa~~lgvs~~tV~~~ 53 (110)
T 1q1h_A 34 MTDEEIANQLNIKVNDVRKK 53 (110)
T ss_dssp BCHHHHHHTTTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 37889999999998776543
No 230
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=21.30 E-value=1.1e+02 Score=16.80 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=13.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+.++
T Consensus 79 ~~glTq~elA~~lGis~s~is~~ 101 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRI 101 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34556666666666665555544
No 231
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=20.98 E-value=98 Score=16.46 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.8
Q ss_pred HHHHHHHhCCCHHHHHHhh
Q 037180 27 LWGFSMKCGVSIDAIKEAN 45 (66)
Q Consensus 27 l~~Ia~~~~~~~~~l~~~N 45 (66)
+-.+|+.+|+++++..+.+
T Consensus 86 l~~LA~~lgiDle~al~~k 104 (114)
T 2q5z_A 86 VCALANIHGVNLEKTRELK 104 (114)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 3456778999998877543
No 232
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=20.88 E-value=89 Score=20.54 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=18.3
Q ss_pred ccEEEEccCCcHHHHHHHhCCC
Q 037180 16 CRIVEILRGDTLWGFSMKCGVS 37 (66)
Q Consensus 16 ~~~y~V~~GdTl~~Ia~~~~~~ 37 (66)
...+.+.+|||+.+.+.+.|+.
T Consensus 22 g~~~~~~~g~ti~~a~~~~g~~ 43 (493)
T 1y56_A 22 GKELEAYEGEKLPVALLANEIY 43 (493)
T ss_dssp TEEEEEETTCBHHHHHHHTTCC
T ss_pred CEEEEecCCCHHHHHHHHCCCc
Confidence 3468899999999999988773
No 233
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.80 E-value=1.1e+02 Score=17.89 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=19.6
Q ss_pred EccCCcHHHHHHHhCCCHHHHHH
Q 037180 21 ILRGDTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 21 V~~GdTl~~Ia~~~~~~~~~l~~ 43 (66)
+..|-|-++||++.|++...+..
T Consensus 187 ~~~g~s~~eIa~~l~is~~tV~~ 209 (236)
T 2q0o_A 187 ASKGKTASVTANLTGINARTVQH 209 (236)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHH
Confidence 45799999999999999887653
No 234
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=20.43 E-value=78 Score=15.14 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=15.5
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
.|+-+|.++.|++.+++.+
T Consensus 51 g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 51 GTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhh
Confidence 3688899999999988764
No 235
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=20.34 E-value=73 Score=14.11 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=14.3
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIKE 43 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~~ 43 (66)
+-|..+|++.|++..++.+
T Consensus 22 ~~l~~~a~~~g~s~s~~ir 40 (55)
T 2k9i_A 22 DRLMEIAKEKNLTLSDVCR 40 (55)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4466777788999888765
No 236
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.14 E-value=72 Score=19.60 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCcHHHHHHHhCCCHHHHH
Q 037180 24 GDTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 24 GdTl~~Ia~~~~~~~~~l~ 42 (66)
--|+.+||++.|++....-
T Consensus 9 ~~Ti~diA~~aGVS~~TVS 27 (366)
T 3h5t_A 9 YGTLASIAAKLGISRTTVS 27 (366)
T ss_dssp TTHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHH
Confidence 4589999999999977654
No 237
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.12 E-value=64 Score=19.63 Aligned_cols=18 Identities=33% Similarity=0.211 Sum_probs=14.8
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 037180 25 DTLWGFSMKCGVSIDAIK 42 (66)
Q Consensus 25 dTl~~Ia~~~~~~~~~l~ 42 (66)
-|+.+||++.|++....-
T Consensus 11 ~ti~diA~~agVS~~TVS 28 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVS 28 (344)
T ss_dssp CCHHHHHHHHCCCSHHHH
T ss_pred CCHHHHHHHHCCCHHHHH
Confidence 489999999999966653
No 238
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=20.12 E-value=1.1e+02 Score=15.90 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=14.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHh
Q 037180 22 LRGDTLWGFSMKCGVSIDAIKEA 44 (66)
Q Consensus 22 ~~GdTl~~Ia~~~~~~~~~l~~~ 44 (66)
+.|-|..++|++.|++...+-++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~i 47 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAI 47 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 44666666777777766665554
No 239
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=20.06 E-value=89 Score=14.99 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=30.3
Q ss_pred EEEEccCCcHHHHHHHhCCCHHHH-HHhhC--CCC-CCcCCCCEEEE
Q 037180 18 IVEILRGDTLWGFSMKCGVSIDAI-KEANG--LSG-DTIYYSIICIF 60 (66)
Q Consensus 18 ~y~V~~GdTl~~Ia~~~~~~~~~l-~~~N~--l~~-~~l~~G~~l~i 60 (66)
.+.+..|-|+.++-++.+.....+ ...|+ +.. ..+..|+.|.|
T Consensus 17 ~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~i 63 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEV 63 (70)
T ss_dssp EEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEE
T ss_pred eEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEE
Confidence 467778899999999988765543 34564 233 57888988854
Done!