BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037185
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
Length = 364
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 9 LAENLEEMDRSVKQMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQK 68
+ N+ + V + LI++ + + ++ P+ D++HL+Q+LA +
Sbjct: 29 FSANINPLGMPVSVKRALIDNLDCIERY--PD-----ADYFHLHQALARHH--------- 72
Query: 69 NVPSDIPLQGSGNTKSGFAQGSPLLTPDRKM 99
VP+ L G+G T+S F S L P R M
Sbjct: 73 QVPASWILAGNGETESIFTVASG-LKPRRAM 102
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT------TLNAKLDYER 283
LQ ++ L+ ES R ++ + T LQGQ+ AQ D N L Y
Sbjct: 74 LQGFINSLDESTQESKL---RYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYT- 129
Query: 284 MQVLKFQERIAKVETNLSDRNNEVA-ELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342
K+ R+A E D EV LKIA + L ++ L ++ EK L
Sbjct: 130 ----KYASRLAGKENITEDEAKEVHRSLKIAAGIFKH---LKESHL-PKLITPAEKGRDL 181
Query: 343 DARLKEWELQGKALEDKIRQCETEKMEIT 371
++RL +E + QC+ E E+T
Sbjct: 182 ESRL---------IEAYVIQCQAEAQEVT 201
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT------TLNAKLDYER 283
LQ ++ L+ ES R ++ + T LQGQ+ AQ D N L Y
Sbjct: 70 LQGFINSLDESTQESKL---RYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYT- 125
Query: 284 MQVLKFQERIAKVETNLSDRNNEVA-ELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342
K+ R+A E D EV LKIA + L ++ L ++ EK L
Sbjct: 126 ----KYASRLAGKENITEDEAKEVHRSLKIAAGIFKH---LKESHL-PKLITPAEKGRDL 177
Query: 343 DARLKEWELQGKALEDKIRQCETEKMEIT 371
++RL +E + QC+ E E+T
Sbjct: 178 ESRL---------IEAYVIQCQAEAQEVT 197
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT------TLNAKLDYER 283
LQ ++ L+ ES R ++ + T LQGQ+ AQ D N L Y
Sbjct: 68 LQGFINSLDESTQESKL---RYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYT- 123
Query: 284 MQVLKFQERIAKVETNLSDRNNEVA-ELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342
K+ R+A E D EV LKIA + L ++ L ++ EK L
Sbjct: 124 ----KYASRLAGKENITEDEAKEVHRSLKIAAGIFKH---LKESHL-PKLITPAEKGRDL 175
Query: 343 DARLKEWELQGKALEDKIRQCETEKMEIT 371
++RL +E + QC+ E E+T
Sbjct: 176 ESRL---------IEAYVIQCQAEAQEVT 195
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT------TLNAKLDYER 283
LQ ++ L+ ES R ++ + T LQGQ+ AQ D N L Y
Sbjct: 67 LQGFINSLDESTQESKL---RYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYT- 122
Query: 284 MQVLKFQERIAKVETNLSDRNNEVA-ELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342
K+ R+A E D EV LKIA + L ++ L ++ EK L
Sbjct: 123 ----KYASRLAGKENITEDEAKEVHRSLKIAAGIFKH---LKESHL-PKLITPAEKGRDL 174
Query: 343 DARLKEWELQGKALEDKIRQCETEKMEIT 371
++RL +E + QC+ E E+T
Sbjct: 175 ESRL---------IEAYVIQCQAEAQEVT 194
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT------TLNAKLDYER 283
LQ ++ L+ ES R ++ + T LQGQ+ AQ D N L Y
Sbjct: 67 LQGFINSLDESTQESKL---RYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYT- 122
Query: 284 MQVLKFQERIAKVETNLSDRNNEVA-ELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342
K+ R+A E D EV LKIA + L ++ L ++ EK L
Sbjct: 123 ----KYASRLAGKENITEDEAKEVHRSLKIAAGIFKH---LKESHL-PKLITPAEKGRDL 174
Query: 343 DARLKEWELQGKALEDKIRQCETEKMEIT 371
++RL +E + QC+ E E+T
Sbjct: 175 ESRL---------IEAYVIQCQAEAQEVT 194
>pdb|1HW1|A Chain A, The Fadr-Dna Complex: Transcriptional Control Of Fatty
Acid Metabolism In Escherichia Coli
pdb|1HW1|B Chain B, The Fadr-Dna Complex: Transcriptional Control Of Fatty
Acid Metabolism In Escherichia Coli
pdb|1HW2|A Chain A, Fadr-Dna Complex: Transcriptional Control Of Fatty Acid
Metabolism In Echerichia Coli
pdb|1HW2|B Chain B, Fadr-Dna Complex: Transcriptional Control Of Fatty Acid
Metabolism In Echerichia Coli
Length = 239
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 36 FHRPELTAHIEDFYHLYQSLAE------------RYDHLTGEL----QKNVPSDIPLQG 78
F PE + FYH +L RY H +GE+ QKN+P D+ +QG
Sbjct: 180 FANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQG 238
>pdb|1E2X|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E.
Coli
pdb|1H9G|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E.
Coli, In Complex With Myristoyl-Coa
pdb|1H9T|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E.
Coli In Complex With Fadb Operator
pdb|1H9T|B Chain B, Fadr, Fatty Acid Responsive Transcription Factor From E.
Coli In Complex With Fadb Operator
Length = 243
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 36 FHRPELTAHIEDFYHLYQSLAE------------RYDHLTGEL----QKNVPSDIPLQG 78
F PE + FYH +L RY H +GE+ QKN+P D+ +QG
Sbjct: 184 FANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQG 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,460,983
Number of Sequences: 62578
Number of extensions: 449923
Number of successful extensions: 1605
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 149
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)