Query 037185
Match_columns 533
No_of_seqs 98 out of 100
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 99.9 1.1E-27 2.4E-32 198.7 6.4 59 2-60 9-74 (74)
2 TIGR02169 SMC_prok_A chromosom 99.2 4.6E-07 1E-11 102.1 43.5 123 381-503 887-1022(1164)
3 PRK02224 chromosome segregatio 99.2 1.8E-06 3.9E-11 96.7 44.0 24 256-279 475-498 (880)
4 TIGR02169 SMC_prok_A chromosom 99.1 1.9E-06 4.2E-11 97.2 43.7 26 174-199 165-190 (1164)
5 TIGR02168 SMC_prok_B chromosom 99.1 8.2E-07 1.8E-11 99.5 40.0 31 169-199 674-704 (1179)
6 TIGR02168 SMC_prok_B chromosom 99.1 4.4E-06 9.5E-11 93.8 44.2 27 174-200 167-193 (1179)
7 COG1196 Smc Chromosome segrega 99.1 3.9E-06 8.5E-11 98.0 44.4 287 209-516 714-1027(1163)
8 PRK02224 chromosome segregatio 99.0 3.1E-05 6.8E-10 87.0 45.5 116 384-504 524-639 (880)
9 TIGR00606 rad50 rad50. This fa 99.0 9E-06 1.9E-10 96.0 42.8 182 302-483 892-1091(1311)
10 PRK03918 chromosome segregatio 99.0 2.7E-05 5.9E-10 87.0 44.1 66 419-484 620-690 (880)
11 KOG0161 Myosin class II heavy 99.0 1.8E-05 3.8E-10 96.5 44.9 281 240-521 1081-1419(1930)
12 KOG0161 Myosin class II heavy 98.9 1.9E-05 4.1E-10 96.2 42.3 159 232-397 964-1146(1930)
13 COG1196 Smc Chromosome segrega 98.9 4.6E-05 9.9E-10 89.3 43.6 207 249-455 246-462 (1163)
14 TIGR00606 rad50 rad50. This fa 98.8 0.0001 2.3E-09 87.3 42.0 152 224-391 798-949 (1311)
15 PF10174 Cast: RIM-binding pro 98.8 2.4E-05 5.3E-10 88.8 35.2 307 177-498 8-374 (775)
16 PF10174 Cast: RIM-binding pro 98.7 0.00013 2.8E-09 83.1 38.4 272 215-500 289-602 (775)
17 PRK03918 chromosome segregatio 98.7 0.00042 9E-09 77.7 42.1 45 408-452 388-432 (880)
18 KOG0996 Structural maintenance 98.6 0.00034 7.4E-09 81.8 37.6 210 261-481 375-591 (1293)
19 KOG0995 Centromere-associated 98.6 0.00045 9.7E-09 76.1 35.1 278 186-509 259-549 (581)
20 PF00261 Tropomyosin: Tropomyo 98.5 0.00014 3E-09 71.4 27.5 225 166-436 9-236 (237)
21 KOG4674 Uncharacterized conser 98.5 0.00073 1.6E-08 82.2 38.2 331 175-505 727-1108(1822)
22 PRK01156 chromosome segregatio 98.5 0.0048 1E-07 70.2 45.9 19 48-66 164-182 (895)
23 KOG0933 Structural maintenance 98.5 8.1E-05 1.8E-09 85.8 27.9 236 219-486 678-918 (1174)
24 PRK01156 chromosome segregatio 98.5 0.0057 1.2E-07 69.6 43.0 21 258-278 471-491 (895)
25 KOG0964 Structural maintenance 98.4 0.0023 5E-08 74.2 37.8 324 162-515 174-524 (1200)
26 PF00038 Filament: Intermediat 98.4 0.0028 6E-08 63.3 35.2 77 256-332 68-151 (312)
27 PF00261 Tropomyosin: Tropomyo 98.4 0.00038 8.2E-09 68.4 26.8 115 172-321 1-115 (237)
28 PF00038 Filament: Intermediat 98.4 0.0017 3.6E-08 64.9 31.7 209 304-520 53-290 (312)
29 KOG0933 Structural maintenance 98.3 0.0019 4.1E-08 75.1 33.4 298 171-501 676-999 (1174)
30 KOG0996 Structural maintenance 98.3 0.002 4.2E-08 75.8 33.9 223 257-511 413-646 (1293)
31 KOG4674 Uncharacterized conser 98.3 0.0018 4E-08 78.9 34.9 298 168-482 801-1121(1822)
32 PHA02562 46 endonuclease subun 98.3 0.0021 4.5E-08 68.6 32.0 65 398-462 338-402 (562)
33 PF07888 CALCOCO1: Calcium bin 98.3 0.013 2.7E-07 65.1 39.4 56 221-279 181-236 (546)
34 PF12128 DUF3584: Protein of u 98.3 0.0025 5.4E-08 75.5 34.7 271 169-451 604-881 (1201)
35 PF05701 WEMBL: Weak chloropla 98.3 0.012 2.6E-07 64.3 44.8 177 340-516 238-417 (522)
36 PF07888 CALCOCO1: Calcium bin 98.3 0.0065 1.4E-07 67.2 34.6 74 224-300 163-236 (546)
37 PF09730 BicD: Microtubule-ass 98.2 0.021 4.5E-07 65.2 38.8 103 168-270 30-149 (717)
38 KOG0250 DNA repair protein RAD 98.2 0.0024 5.2E-08 74.6 30.9 236 178-452 220-463 (1074)
39 KOG0963 Transcription factor/C 98.2 0.0037 8.1E-08 69.6 30.7 63 432-494 365-431 (629)
40 PF14662 CCDC155: Coiled-coil 98.1 0.0019 4.2E-08 63.2 24.3 75 402-483 114-188 (193)
41 PRK04778 septation ring format 98.1 0.012 2.6E-07 64.7 33.4 172 224-411 255-432 (569)
42 PHA02562 46 endonuclease subun 98.1 0.0033 7.1E-08 67.1 27.2 43 442-484 361-403 (562)
43 PRK11637 AmiB activator; Provi 98.1 0.0039 8.5E-08 65.7 27.2 48 412-459 206-253 (428)
44 KOG0971 Microtubule-associated 98.0 0.01 2.2E-07 68.8 30.8 45 201-245 308-352 (1243)
45 KOG0250 DNA repair protein RAD 98.0 0.014 2.9E-07 68.6 31.3 155 326-512 298-456 (1074)
46 KOG0971 Microtubule-associated 97.9 0.092 2E-06 61.2 37.6 126 169-309 228-357 (1243)
47 COG1340 Uncharacterized archae 97.9 0.031 6.8E-07 57.9 29.6 182 269-477 33-217 (294)
48 PF05701 WEMBL: Weak chloropla 97.9 0.073 1.6E-06 58.4 38.7 104 380-490 306-409 (522)
49 KOG4673 Transcription factor T 97.9 0.1 2.2E-06 59.6 37.0 66 465-530 578-643 (961)
50 PF14915 CCDC144C: CCDC144C pr 97.8 0.064 1.4E-06 55.8 34.3 135 256-390 56-197 (305)
51 PF15070 GOLGA2L5: Putative go 97.8 0.097 2.1E-06 58.9 33.1 107 258-372 82-188 (617)
52 PF12128 DUF3584: Protein of u 97.8 0.19 4E-06 60.1 40.1 128 218-348 607-736 (1201)
53 PRK04863 mukB cell division pr 97.8 0.11 2.3E-06 63.7 35.5 25 476-500 553-577 (1486)
54 PF01576 Myosin_tail_1: Myosin 97.8 5.9E-06 1.3E-10 94.3 0.0 239 216-472 248-487 (859)
55 KOG0612 Rho-associated, coiled 97.7 0.2 4.4E-06 59.9 42.7 185 205-391 488-689 (1317)
56 PRK11637 AmiB activator; Provi 97.7 0.044 9.5E-07 58.0 28.4 33 423-455 203-235 (428)
57 PF01576 Myosin_tail_1: Myosin 97.7 8.2E-06 1.8E-10 93.2 0.0 196 310-516 290-506 (859)
58 KOG0964 Structural maintenance 97.7 0.16 3.4E-06 59.8 33.1 222 258-490 232-483 (1200)
59 PF14662 CCDC155: Coiled-coil 97.6 0.023 5.1E-07 55.8 22.5 97 320-427 92-188 (193)
60 KOG1029 Endocytic adaptor prot 97.6 0.19 4.1E-06 58.1 32.2 104 262-365 408-521 (1118)
61 PF09726 Macoilin: Transmembra 97.6 0.14 3E-06 58.5 31.5 31 338-368 539-569 (697)
62 PRK04863 mukB cell division pr 97.6 0.076 1.6E-06 64.9 30.5 118 246-368 304-421 (1486)
63 KOG0977 Nuclear envelope prote 97.5 0.22 4.8E-06 55.6 30.8 167 169-348 46-212 (546)
64 KOG0980 Actin-binding protein 97.5 0.041 9E-07 63.7 25.9 94 252-349 385-478 (980)
65 PF05667 DUF812: Protein of un 97.5 0.28 6.2E-06 55.1 33.4 146 328-484 438-588 (594)
66 KOG0612 Rho-associated, coiled 97.5 0.39 8.5E-06 57.6 33.2 101 282-395 614-716 (1317)
67 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.31 6.8E-06 54.4 31.5 48 439-486 421-468 (650)
68 PF09726 Macoilin: Transmembra 97.4 0.091 2E-06 59.9 26.0 107 414-520 541-647 (697)
69 COG1579 Zn-ribbon protein, pos 97.3 0.023 4.9E-07 57.4 18.9 102 251-368 19-120 (239)
70 PF09787 Golgin_A5: Golgin sub 97.3 0.36 7.9E-06 52.8 37.0 23 169-191 113-135 (511)
71 PF05557 MAD: Mitotic checkpoi 97.3 5.7E-05 1.2E-09 84.4 0.0 218 270-488 192-420 (722)
72 KOG0963 Transcription factor/C 97.3 0.52 1.1E-05 53.3 30.4 219 219-450 115-342 (629)
73 PF08317 Spc7: Spc7 kinetochor 97.3 0.053 1.2E-06 55.9 21.2 133 284-427 128-260 (325)
74 PF09755 DUF2046: Uncharacteri 97.3 0.34 7.4E-06 50.8 32.1 90 257-371 107-198 (310)
75 COG4942 Membrane-bound metallo 97.2 0.34 7.4E-06 52.6 27.4 53 263-315 38-90 (420)
76 PF05557 MAD: Mitotic checkpoi 97.2 0.0031 6.7E-08 70.8 12.8 45 464-512 603-647 (722)
77 PF15070 GOLGA2L5: Putative go 97.2 0.7 1.5E-05 52.3 30.7 65 257-321 23-103 (617)
78 KOG0976 Rho/Rac1-interacting s 97.1 0.85 1.8E-05 53.2 37.8 82 211-302 92-173 (1265)
79 PRK04778 septation ring format 97.1 0.68 1.5E-05 51.2 35.8 195 307-523 232-435 (569)
80 COG4942 Membrane-bound metallo 97.0 0.31 6.6E-06 53.0 24.8 165 256-431 59-244 (420)
81 KOG0946 ER-Golgi vesicle-tethe 97.0 0.49 1.1E-05 55.0 26.9 94 375-473 805-898 (970)
82 KOG0977 Nuclear envelope prote 97.0 0.9 2E-05 50.9 31.4 161 164-324 48-223 (546)
83 KOG0962 DNA repair protein RAD 96.9 1.6 3.5E-05 53.1 42.3 103 419-523 1009-1119(1294)
84 PF13514 AAA_27: AAA domain 96.9 1.5 3.1E-05 52.2 39.4 40 477-516 936-978 (1111)
85 PF15619 Lebercilin: Ciliary p 96.9 0.46 1E-05 46.5 23.5 29 171-199 11-39 (194)
86 KOG1029 Endocytic adaptor prot 96.9 0.43 9.3E-06 55.4 25.5 30 386-415 552-581 (1118)
87 PF10473 CENP-F_leu_zip: Leuci 96.9 0.13 2.8E-06 48.3 18.0 84 340-427 6-89 (140)
88 KOG0982 Centrosomal protein Nu 96.9 0.93 2E-05 49.7 26.5 117 280-427 246-362 (502)
89 PF15619 Lebercilin: Ciliary p 96.9 0.52 1.1E-05 46.1 23.4 169 288-490 16-187 (194)
90 PF05622 HOOK: HOOK protein; 96.9 0.00026 5.6E-09 79.2 0.0 83 404-487 554-649 (713)
91 KOG4673 Transcription factor T 96.9 1.4 3E-05 50.9 35.5 184 167-359 404-634 (961)
92 KOG4643 Uncharacterized coiled 96.9 1.7 3.7E-05 51.8 39.9 99 416-514 479-579 (1195)
93 PRK09039 hypothetical protein; 96.8 0.084 1.8E-06 55.2 18.0 58 258-315 48-105 (343)
94 KOG4593 Mitotic checkpoint pro 96.8 1.6 3.4E-05 50.2 38.0 102 394-499 272-388 (716)
95 smart00787 Spc7 Spc7 kinetocho 96.7 0.15 3.2E-06 53.1 18.9 114 307-427 142-255 (312)
96 KOG4643 Uncharacterized coiled 96.7 2.2 4.7E-05 50.9 37.9 125 388-523 413-540 (1195)
97 PF12718 Tropomyosin_1: Tropom 96.7 0.16 3.5E-06 47.3 17.0 94 224-320 13-109 (143)
98 COG1579 Zn-ribbon protein, pos 96.7 0.16 3.5E-06 51.4 18.2 84 263-346 89-172 (239)
99 KOG0018 Structural maintenance 96.7 2.3 5.1E-05 50.8 33.8 240 252-493 223-477 (1141)
100 PF10473 CENP-F_leu_zip: Leuci 96.7 0.2 4.4E-06 47.0 17.3 131 349-511 1-131 (140)
101 KOG0978 E3 ubiquitin ligase in 96.6 1.9 4.2E-05 49.6 39.8 166 348-515 434-603 (698)
102 KOG0995 Centromere-associated 96.6 1.8 3.8E-05 48.9 27.5 51 261-315 233-283 (581)
103 KOG0976 Rho/Rac1-interacting s 96.6 2.4 5.2E-05 49.7 37.4 95 418-513 372-470 (1265)
104 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.6 0.23 5E-06 45.2 16.7 97 252-348 20-116 (132)
105 TIGR03185 DNA_S_dndD DNA sulfu 96.5 2.1 4.6E-05 48.0 32.6 61 249-309 223-287 (650)
106 COG0419 SbcC ATPase involved i 96.4 2.8 6.1E-05 48.8 42.2 35 329-363 585-619 (908)
107 KOG0946 ER-Golgi vesicle-tethe 96.3 2 4.4E-05 50.2 25.4 118 248-365 736-876 (970)
108 PF05667 DUF812: Protein of un 96.2 3 6.6E-05 47.2 31.3 34 489-523 538-571 (594)
109 PF04849 HAP1_N: HAP1 N-termin 96.1 1.5 3.3E-05 46.0 22.0 79 398-483 207-285 (306)
110 PF04849 HAP1_N: HAP1 N-termin 96.1 1.4 2.9E-05 46.4 21.4 178 169-365 94-290 (306)
111 PRK09039 hypothetical protein; 96.1 0.41 9E-06 50.1 17.9 46 381-426 121-166 (343)
112 KOG1003 Actin filament-coating 96.0 1.8 4E-05 43.2 24.1 84 327-435 120-203 (205)
113 PF10267 Tmemb_cc2: Predicted 96.0 2.9 6.3E-05 45.3 24.2 105 174-311 214-318 (395)
114 PF12718 Tropomyosin_1: Tropom 96.0 0.58 1.3E-05 43.6 16.6 74 284-365 35-108 (143)
115 PF08317 Spc7: Spc7 kinetochor 96.0 2.4 5.1E-05 44.0 24.0 76 334-427 125-200 (325)
116 KOG4677 Golgi integral membran 96.0 2 4.4E-05 47.4 22.6 188 175-365 209-438 (554)
117 PF05911 DUF869: Plant protein 96.0 4.6 0.0001 47.1 36.5 25 4-28 258-282 (769)
118 PF09789 DUF2353: Uncharacteri 95.9 2.4 5.1E-05 44.9 22.0 196 259-491 12-220 (319)
119 COG0419 SbcC ATPase involved i 95.9 5.1 0.00011 46.8 46.1 54 469-522 656-711 (908)
120 PF15066 CAGE1: Cancer-associa 95.8 4.3 9.2E-05 45.1 24.3 68 357-434 459-526 (527)
121 PF05010 TACC: Transforming ac 95.7 2.5 5.4E-05 42.1 23.7 184 256-464 9-200 (207)
122 PF05911 DUF869: Plant protein 95.6 4.1 8.9E-05 47.5 24.4 177 264-492 18-208 (769)
123 TIGR02680 conserved hypothetic 95.6 8.5 0.00018 47.3 29.9 27 172-198 742-768 (1353)
124 TIGR02680 conserved hypothetic 95.5 9.1 0.0002 47.0 31.5 53 470-523 938-990 (1353)
125 PF09730 BicD: Microtubule-ass 95.5 0.88 1.9E-05 52.4 18.6 111 289-403 357-467 (717)
126 KOG0018 Structural maintenance 95.5 8.5 0.00018 46.4 26.8 101 260-365 715-828 (1141)
127 PF13514 AAA_27: AAA domain 95.3 9.2 0.0002 45.7 34.0 28 171-198 679-706 (1111)
128 PLN03229 acetyl-coenzyme A car 95.2 5.1 0.00011 46.6 23.4 34 439-483 695-728 (762)
129 PF05622 HOOK: HOOK protein; 95.1 0.0079 1.7E-07 67.6 1.2 178 321-507 237-427 (713)
130 TIGR03007 pepcterm_ChnLen poly 95.1 3.3 7.2E-05 44.4 20.6 21 396-416 354-374 (498)
131 PF06160 EzrA: Septation ring 95.1 7.3 0.00016 43.4 35.3 53 434-486 446-498 (560)
132 PF13870 DUF4201: Domain of un 95.0 3.2 6.9E-05 39.2 19.6 115 329-460 5-126 (177)
133 PF12795 MscS_porin: Mechanose 95.0 3.2 6.9E-05 41.0 18.7 69 375-457 149-217 (240)
134 PF13851 GAS: Growth-arrest sp 95.0 4 8.6E-05 40.1 23.2 132 330-476 48-187 (201)
135 smart00787 Spc7 Spc7 kinetocho 95.0 5.6 0.00012 41.6 22.2 48 380-427 148-195 (312)
136 COG3883 Uncharacterized protei 94.9 5.5 0.00012 41.2 22.7 115 249-368 73-193 (265)
137 KOG0994 Extracellular matrix g 94.9 13 0.00029 45.5 27.9 59 380-438 1693-1751(1758)
138 PLN02939 transferase, transfer 94.8 9.1 0.0002 45.9 24.6 121 302-442 328-452 (977)
139 PRK11281 hypothetical protein; 94.7 14 0.0003 45.0 33.1 31 330-360 278-308 (1113)
140 COG5185 HEC1 Protein involved 94.7 2.1 4.6E-05 47.6 17.8 94 286-412 266-359 (622)
141 TIGR03007 pepcterm_ChnLen poly 94.7 4.2 9.1E-05 43.6 19.9 33 451-483 315-347 (498)
142 TIGR01843 type_I_hlyD type I s 94.6 5.2 0.00011 41.0 19.7 29 398-426 204-232 (423)
143 PF13851 GAS: Growth-arrest sp 94.6 5 0.00011 39.4 21.3 102 263-372 27-128 (201)
144 PF08614 ATG16: Autophagy prot 94.4 0.27 5.9E-06 47.2 9.4 102 356-461 79-180 (194)
145 PF08614 ATG16: Autophagy prot 94.3 0.27 5.9E-06 47.2 9.2 88 250-348 82-169 (194)
146 PF04111 APG6: Autophagy prote 94.3 0.47 1E-05 49.2 11.6 23 257-279 10-32 (314)
147 PF05483 SCP-1: Synaptonemal c 94.3 14 0.00029 43.1 41.5 139 381-519 546-720 (786)
148 KOG0978 E3 ubiquitin ligase in 94.0 15 0.00033 42.7 33.6 116 302-428 465-583 (698)
149 PLN03188 kinesin-12 family pro 93.9 22 0.00047 43.9 25.6 156 190-348 990-1191(1320)
150 COG3883 Uncharacterized protei 93.7 9.8 0.00021 39.5 24.5 44 408-451 152-195 (265)
151 PF13166 AAA_13: AAA domain 93.6 15 0.00032 41.2 22.5 65 387-451 407-471 (712)
152 TIGR01000 bacteriocin_acc bact 93.6 12 0.00026 40.2 21.0 61 291-351 140-200 (457)
153 KOG0999 Microtubule-associated 93.6 17 0.00036 41.6 26.8 55 326-409 166-220 (772)
154 PF06818 Fez1: Fez1; InterPro 93.4 3.3 7.2E-05 41.3 14.9 15 380-394 135-149 (202)
155 COG0497 RecN ATPase involved i 93.3 15 0.00033 41.6 21.6 46 439-484 335-381 (557)
156 PF10186 Atg14: UV radiation r 93.3 6.4 0.00014 38.6 16.9 18 331-348 28-45 (302)
157 KOG2991 Splicing regulator [RN 93.3 12 0.00027 39.2 20.7 150 247-407 106-260 (330)
158 KOG0243 Kinesin-like protein [ 93.3 14 0.00031 44.5 22.1 186 298-515 404-594 (1041)
159 PF12325 TMF_TATA_bd: TATA ele 93.0 3.7 8E-05 37.8 13.6 95 385-486 18-115 (120)
160 PF05483 SCP-1: Synaptonemal c 93.0 22 0.00048 41.4 41.2 173 224-400 239-422 (786)
161 PRK10929 putative mechanosensi 92.8 29 0.00064 42.3 36.0 112 251-362 175-290 (1109)
162 PF10168 Nup88: Nuclear pore c 92.8 11 0.00024 43.6 20.1 61 288-348 597-664 (717)
163 KOG3850 Predicted membrane pro 92.8 18 0.00038 39.7 20.6 34 174-207 262-295 (455)
164 KOG0249 LAR-interacting protei 92.8 25 0.00054 41.3 25.5 216 169-424 25-257 (916)
165 KOG4677 Golgi integral membran 92.7 20 0.00043 40.1 34.7 176 319-522 312-507 (554)
166 PF05010 TACC: Transforming ac 92.6 12 0.00026 37.4 25.1 91 256-346 69-159 (207)
167 COG4372 Uncharacterized protei 92.6 19 0.00041 39.7 27.2 54 399-452 212-265 (499)
168 COG1340 Uncharacterized archae 92.6 16 0.00034 38.6 31.7 49 378-426 160-208 (294)
169 PF06160 EzrA: Septation ring 92.6 21 0.00045 40.0 37.9 47 319-365 241-292 (560)
170 PF06785 UPF0242: Uncharacteri 92.5 5.9 0.00013 42.6 16.1 102 255-385 84-185 (401)
171 PF09787 Golgin_A5: Golgin sub 92.5 20 0.00043 39.6 25.0 89 406-494 276-382 (511)
172 PLN02939 transferase, transfer 92.5 30 0.00066 41.7 28.7 85 257-348 227-311 (977)
173 PF09304 Cortex-I_coil: Cortex 92.5 3.1 6.8E-05 37.9 12.1 54 394-447 13-66 (107)
174 PF04012 PspA_IM30: PspA/IM30 92.4 11 0.00024 36.4 18.9 49 379-427 94-142 (221)
175 KOG0962 DNA repair protein RAD 92.2 37 0.00081 42.1 36.0 30 177-206 738-767 (1294)
176 PF04582 Reo_sigmaC: Reovirus 92.1 0.26 5.6E-06 52.0 5.6 129 209-351 26-154 (326)
177 PLN03188 kinesin-12 family pro 91.9 40 0.00086 41.8 24.1 125 264-390 968-1115(1320)
178 PF04111 APG6: Autophagy prote 91.9 1.8 4E-05 45.0 11.5 49 323-371 43-91 (314)
179 KOG1937 Uncharacterized conser 91.9 25 0.00054 39.3 31.0 94 240-337 284-380 (521)
180 KOG0999 Microtubule-associated 91.9 28 0.00061 39.9 27.7 34 483-516 227-260 (772)
181 COG4372 Uncharacterized protei 91.9 23 0.00051 39.0 26.2 211 167-384 76-292 (499)
182 TIGR01000 bacteriocin_acc bact 91.8 21 0.00046 38.4 20.4 10 289-298 109-118 (457)
183 KOG0979 Structural maintenance 91.7 38 0.00082 41.0 29.2 38 327-364 259-296 (1072)
184 PF07111 HCR: Alpha helical co 91.6 32 0.0007 40.2 35.5 235 208-465 356-615 (739)
185 PRK11281 hypothetical protein; 91.6 41 0.00088 41.2 31.3 65 373-437 189-253 (1113)
186 PF12325 TMF_TATA_bd: TATA ele 91.6 3.5 7.5E-05 37.9 11.6 19 324-342 45-63 (120)
187 KOG4360 Uncharacterized coiled 91.6 6.8 0.00015 44.1 15.7 26 169-199 154-179 (596)
188 PF08647 BRE1: BRE1 E3 ubiquit 91.4 4.8 0.0001 35.2 11.9 60 382-441 2-61 (96)
189 PF09728 Taxilin: Myosin-like 91.4 21 0.00045 37.4 36.4 218 258-508 80-305 (309)
190 KOG2129 Uncharacterized conser 91.3 28 0.0006 38.8 22.6 107 411-522 208-329 (552)
191 PF09789 DUF2353: Uncharacteri 91.3 23 0.00049 37.7 21.6 140 285-435 80-227 (319)
192 PF14915 CCDC144C: CCDC144C pr 91.1 23 0.00051 37.5 23.9 73 295-370 232-304 (305)
193 PRK10929 putative mechanosensi 91.0 46 0.001 40.8 30.4 66 372-437 169-234 (1109)
194 KOG1853 LIS1-interacting prote 90.9 23 0.0005 37.2 18.5 130 249-402 34-166 (333)
195 PRK10869 recombination and rep 90.6 33 0.00072 38.4 25.4 73 406-485 308-381 (553)
196 COG4913 Uncharacterized protei 90.6 43 0.00094 39.7 23.5 207 168-409 633-886 (1104)
197 PF00769 ERM: Ezrin/radixin/mo 90.5 11 0.00024 38.0 15.2 36 164-199 4-39 (246)
198 PF15290 Syntaphilin: Golgi-lo 90.5 2.8 6E-05 43.9 11.0 83 297-416 81-164 (305)
199 PRK10884 SH3 domain-containing 90.4 2.7 5.9E-05 41.6 10.5 50 385-434 120-169 (206)
200 PF10146 zf-C4H2: Zinc finger- 90.3 5 0.00011 40.5 12.4 40 381-420 37-76 (230)
201 PF10186 Atg14: UV radiation r 90.2 20 0.00043 35.3 18.2 25 171-195 19-43 (302)
202 PF04156 IncA: IncA protein; 90.1 12 0.00025 35.4 14.1 24 289-312 79-102 (191)
203 PF06705 SF-assemblin: SF-asse 90.1 22 0.00047 35.5 28.6 21 390-410 168-188 (247)
204 PF11559 ADIP: Afadin- and alp 90.0 12 0.00026 34.4 13.8 29 251-279 68-96 (151)
205 PF04156 IncA: IncA protein; 90.0 16 0.00035 34.4 14.9 12 398-409 103-114 (191)
206 PF10212 TTKRSYEDQ: Predicted 89.9 28 0.0006 39.4 18.7 73 302-389 438-514 (518)
207 KOG2129 Uncharacterized conser 89.9 37 0.0008 37.8 24.1 39 160-198 45-83 (552)
208 PF06548 Kinesin-related: Kine 89.7 39 0.00084 37.8 25.9 65 284-348 344-421 (488)
209 PF10146 zf-C4H2: Zinc finger- 89.5 7 0.00015 39.5 12.7 69 387-455 15-83 (230)
210 KOG0980 Actin-binding protein 89.4 56 0.0012 39.3 37.7 163 262-456 409-571 (980)
211 KOG4360 Uncharacterized coiled 89.2 26 0.00057 39.7 17.8 90 377-473 213-302 (596)
212 PF11559 ADIP: Afadin- and alp 88.9 19 0.0004 33.2 14.5 36 285-320 53-88 (151)
213 KOG4809 Rab6 GTPase-interactin 88.9 49 0.0011 38.0 29.0 104 289-392 329-437 (654)
214 COG2433 Uncharacterized conser 88.7 7.4 0.00016 44.5 13.4 11 310-320 390-400 (652)
215 TIGR02977 phageshock_pspA phag 88.6 26 0.00057 34.4 18.5 89 381-486 97-185 (219)
216 PF04582 Reo_sigmaC: Reovirus 88.5 0.64 1.4E-05 49.1 4.9 70 381-450 82-151 (326)
217 PF09755 DUF2046: Uncharacteri 88.3 39 0.00084 36.0 28.1 200 252-462 30-245 (310)
218 KOG0804 Cytoplasmic Zn-finger 88.0 20 0.00042 40.0 15.6 107 405-511 348-454 (493)
219 PF10168 Nup88: Nuclear pore c 87.9 41 0.00089 39.2 19.0 24 288-311 562-585 (717)
220 TIGR01005 eps_transp_fam exopo 87.8 56 0.0012 37.3 22.4 30 453-482 376-405 (754)
221 TIGR00634 recN DNA repair prot 87.7 51 0.0011 36.7 25.2 56 394-458 343-398 (563)
222 PF15397 DUF4618: Domain of un 87.6 38 0.00082 35.2 25.7 51 249-299 81-135 (258)
223 KOG0243 Kinesin-like protein [ 87.5 78 0.0017 38.6 35.8 53 380-432 636-689 (1041)
224 PF15254 CCDC14: Coiled-coil d 87.3 71 0.0015 38.0 20.2 139 224-370 400-541 (861)
225 PF06785 UPF0242: Uncharacteri 87.1 39 0.00085 36.6 16.8 76 332-418 108-183 (401)
226 KOG4438 Centromere-associated 86.9 56 0.0012 36.3 29.4 142 277-427 216-389 (446)
227 PF00769 ERM: Ezrin/radixin/mo 86.8 15 0.00032 37.2 13.1 18 509-526 219-236 (246)
228 PF09738 DUF2051: Double stran 86.6 8.4 0.00018 40.4 11.7 70 361-441 101-170 (302)
229 PF07106 TBPIP: Tat binding pr 86.1 6.3 0.00014 36.9 9.5 35 331-365 73-107 (169)
230 PF05266 DUF724: Protein of un 85.9 9.6 0.00021 37.4 11.0 26 391-416 160-185 (190)
231 COG2433 Uncharacterized conser 85.8 7.8 0.00017 44.3 11.6 94 270-364 415-508 (652)
232 KOG4603 TBP-1 interacting prot 85.4 4 8.7E-05 40.3 8.0 65 329-402 78-142 (201)
233 PF15294 Leu_zip: Leucine zipp 85.0 54 0.0012 34.4 22.3 87 320-415 117-208 (278)
234 COG1382 GimC Prefoldin, chaper 84.7 15 0.00033 34.1 11.0 106 328-433 4-113 (119)
235 PF10212 TTKRSYEDQ: Predicted 84.6 78 0.0017 35.9 18.8 46 325-370 415-460 (518)
236 PF06818 Fez1: Fez1; InterPro 84.4 26 0.00057 35.1 13.3 75 384-458 32-106 (202)
237 TIGR00634 recN DNA repair prot 83.9 77 0.0017 35.3 24.7 22 463-484 363-385 (563)
238 PRK10884 SH3 domain-containing 83.5 17 0.00037 36.1 11.7 56 397-455 93-148 (206)
239 PF13870 DUF4201: Domain of un 83.5 41 0.00088 31.8 18.1 38 324-361 139-176 (177)
240 PF09304 Cortex-I_coil: Cortex 83.3 26 0.00056 32.2 11.7 60 289-348 42-104 (107)
241 PF10498 IFT57: Intra-flagella 83.2 25 0.00055 37.7 13.6 24 422-445 332-355 (359)
242 PF13166 AAA_13: AAA domain 83.2 85 0.0018 35.3 22.3 30 380-409 442-471 (712)
243 PF07106 TBPIP: Tat binding pr 83.1 12 0.00026 35.1 9.9 38 398-435 73-110 (169)
244 PF07058 Myosin_HC-like: Myosi 82.6 41 0.00089 36.1 14.4 75 256-348 7-84 (351)
245 PF08826 DMPK_coil: DMPK coile 82.4 8.5 0.00018 31.9 7.6 41 325-365 13-53 (61)
246 KOG1003 Actin filament-coating 82.3 59 0.0013 32.9 23.4 31 249-279 4-34 (205)
247 PLN03229 acetyl-coenzyme A car 82.3 21 0.00045 41.9 13.3 95 380-478 459-569 (762)
248 TIGR03017 EpsF chain length de 82.1 43 0.00093 35.4 14.7 107 413-520 256-363 (444)
249 KOG0240 Kinesin (SMY1 subfamil 82.0 1.1E+02 0.0023 35.5 22.1 105 268-372 339-456 (607)
250 PF05266 DUF724: Protein of un 81.8 56 0.0012 32.2 14.3 44 398-441 132-175 (190)
251 PF03962 Mnd1: Mnd1 family; I 81.3 35 0.00076 33.3 12.7 64 284-347 62-127 (188)
252 PF01496 V_ATPase_I: V-type AT 81.0 14 0.00031 42.4 11.4 72 451-522 213-284 (759)
253 PF03962 Mnd1: Mnd1 family; I 80.8 31 0.00066 33.7 12.1 106 249-362 62-167 (188)
254 PF06005 DUF904: Protein of un 80.5 18 0.00038 30.7 9.1 64 288-362 8-71 (72)
255 KOG0244 Kinesin-like protein [ 80.5 1.4E+02 0.0031 36.1 19.7 77 225-301 330-415 (913)
256 PF11932 DUF3450: Protein of u 80.5 45 0.00098 33.2 13.5 23 289-311 40-62 (251)
257 PRK10246 exonuclease subunit S 80.1 1.5E+02 0.0032 35.9 39.0 14 517-530 495-509 (1047)
258 PF12240 Angiomotin_C: Angiomo 80.0 72 0.0016 32.3 14.7 140 336-492 19-161 (205)
259 PF11932 DUF3450: Protein of u 79.4 44 0.00096 33.3 13.0 16 398-413 78-93 (251)
260 KOG0979 Structural maintenance 79.4 1.6E+02 0.0035 36.0 28.2 22 494-516 426-447 (1072)
261 PF04012 PspA_IM30: PspA/IM30 79.2 64 0.0014 31.3 18.3 42 377-418 99-140 (221)
262 KOG0994 Extracellular matrix g 78.8 1.9E+02 0.0041 36.4 38.5 26 169-194 1423-1449(1758)
263 PF02050 FliJ: Flagellar FliJ 78.5 37 0.00081 28.2 14.1 91 401-491 9-104 (123)
264 PF04102 SlyX: SlyX; InterPro 78.5 6.5 0.00014 32.5 5.8 50 289-349 2-51 (69)
265 PF07798 DUF1640: Protein of u 78.4 64 0.0014 30.8 17.0 23 326-348 76-98 (177)
266 PRK10361 DNA recombination pro 78.3 1.2E+02 0.0027 34.0 20.6 43 341-390 137-179 (475)
267 TIGR01005 eps_transp_fam exopo 78.3 1.3E+02 0.0029 34.4 23.8 37 291-327 187-223 (754)
268 KOG4460 Nuclear pore complex, 78.2 1E+02 0.0023 35.6 16.5 141 258-405 590-738 (741)
269 PRK09841 cryptic autophosphory 78.2 75 0.0016 36.6 16.0 86 435-521 307-392 (726)
270 PRK10869 recombination and rep 78.2 1.2E+02 0.0027 34.0 22.8 57 392-457 336-392 (553)
271 KOG0804 Cytoplasmic Zn-finger 77.9 67 0.0015 36.0 14.7 24 429-452 425-448 (493)
272 PF04065 Not3: Not1 N-terminal 77.7 71 0.0015 32.6 13.9 38 253-290 16-55 (233)
273 PF15066 CAGE1: Cancer-associa 77.3 1.4E+02 0.0029 33.9 22.6 136 305-440 362-507 (527)
274 KOG4593 Mitotic checkpoint pro 77.1 1.6E+02 0.0035 34.7 39.2 29 463-491 471-499 (716)
275 KOG1899 LAR transmembrane tyro 77.1 88 0.0019 36.6 15.7 24 286-309 106-129 (861)
276 KOG1899 LAR transmembrane tyro 76.8 1.2E+02 0.0026 35.6 16.6 127 325-451 176-307 (861)
277 PF04108 APG17: Autophagy prot 76.6 1.2E+02 0.0025 32.9 31.2 159 329-520 191-353 (412)
278 PRK10698 phage shock protein P 76.5 86 0.0019 31.3 18.2 65 251-315 47-123 (222)
279 PF10498 IFT57: Intra-flagella 76.3 88 0.0019 33.7 14.9 104 348-458 217-320 (359)
280 PF06810 Phage_GP20: Phage min 76.2 14 0.0003 35.1 8.1 56 277-340 13-68 (155)
281 COG4026 Uncharacterized protei 76.2 23 0.00051 36.6 10.0 70 275-355 140-209 (290)
282 PF15254 CCDC14: Coiled-coil d 75.8 1.3E+02 0.0029 35.9 16.9 121 216-360 423-545 (861)
283 COG1842 PspA Phage shock prote 75.7 96 0.0021 31.4 14.3 28 252-279 48-75 (225)
284 KOG0982 Centrosomal protein Nu 75.6 1.4E+02 0.0031 33.5 22.0 85 303-391 347-439 (502)
285 COG4026 Uncharacterized protei 75.3 19 0.00041 37.2 9.2 76 404-486 135-210 (290)
286 PF10267 Tmemb_cc2: Predicted 74.9 98 0.0021 34.0 14.9 38 16-53 27-75 (395)
287 PF06810 Phage_GP20: Phage min 74.8 19 0.00041 34.2 8.5 63 406-486 8-70 (155)
288 PF12329 TMF_DNA_bd: TATA elem 74.6 16 0.00034 30.9 7.1 48 256-317 12-59 (74)
289 KOG3091 Nuclear pore complex, 74.3 1.6E+02 0.0035 33.4 18.0 114 166-297 335-448 (508)
290 COG4477 EzrA Negative regulato 73.9 1.7E+02 0.0038 33.6 31.9 47 431-477 446-492 (570)
291 PF12329 TMF_DNA_bd: TATA elem 73.3 30 0.00066 29.2 8.6 50 356-409 10-59 (74)
292 PF05529 Bap31: B-cell recepto 73.3 20 0.00043 34.2 8.4 34 380-413 158-191 (192)
293 PRK02119 hypothetical protein; 73.1 16 0.00035 30.8 6.9 53 285-348 3-55 (73)
294 PF10481 CENP-F_N: Cenp-F N-te 72.7 95 0.0021 33.0 13.5 18 253-270 15-32 (307)
295 PF05546 She9_MDM33: She9 / Md 72.6 92 0.002 31.6 13.0 101 382-492 31-131 (207)
296 PF02183 HALZ: Homeobox associ 72.6 12 0.00027 29.1 5.6 39 396-434 4-42 (45)
297 TIGR02977 phageshock_pspA phag 72.6 1E+02 0.0022 30.4 18.6 28 252-279 48-75 (219)
298 PF07798 DUF1640: Protein of u 71.6 96 0.0021 29.6 14.8 10 381-390 143-152 (177)
299 PF02994 Transposase_22: L1 tr 71.6 4.1 9E-05 43.3 3.8 56 441-496 146-201 (370)
300 PF14197 Cep57_CLD_2: Centroso 71.2 46 0.001 28.0 9.1 60 427-486 7-66 (69)
301 PRK04325 hypothetical protein; 71.1 18 0.0004 30.5 6.8 52 287-349 5-56 (74)
302 PRK02793 phi X174 lysis protei 70.6 18 0.00038 30.5 6.5 51 288-349 5-55 (72)
303 PRK00295 hypothetical protein; 70.5 20 0.00044 29.8 6.8 50 289-349 3-52 (68)
304 PF06705 SF-assemblin: SF-asse 70.4 1.2E+02 0.0026 30.3 27.6 14 168-181 8-21 (247)
305 PF10211 Ax_dynein_light: Axon 70.0 61 0.0013 31.6 11.0 63 286-348 122-188 (189)
306 TIGR02231 conserved hypothetic 70.0 36 0.00078 37.4 10.5 48 270-317 124-171 (525)
307 PRK04406 hypothetical protein; 69.7 23 0.00049 30.2 7.0 50 288-348 8-57 (75)
308 KOG1937 Uncharacterized conser 69.4 2E+02 0.0044 32.5 29.5 68 436-506 442-512 (521)
309 TIGR03017 EpsF chain length de 69.1 1.6E+02 0.0035 31.2 22.9 70 292-370 165-234 (444)
310 KOG0972 Huntingtin interacting 68.5 1.3E+02 0.0028 32.4 13.6 130 347-484 223-352 (384)
311 KOG1853 LIS1-interacting prote 68.2 1.7E+02 0.0036 31.1 17.4 75 257-341 28-102 (333)
312 KOG4552 Vitamin-D-receptor int 68.2 1.4E+02 0.003 30.9 13.3 85 357-452 17-101 (272)
313 KOG0249 LAR-interacting protei 67.5 2.8E+02 0.006 33.3 17.6 82 267-348 67-150 (916)
314 PF14992 TMCO5: TMCO5 family 67.0 1.8E+02 0.0038 30.9 14.3 123 169-298 22-165 (280)
315 COG3074 Uncharacterized protei 66.7 68 0.0015 27.9 9.2 53 380-432 22-74 (79)
316 PF09728 Taxilin: Myosin-like 66.6 1.7E+02 0.0038 30.7 34.8 33 164-196 21-53 (309)
317 PRK00846 hypothetical protein; 66.6 25 0.00055 30.4 6.8 51 288-349 10-60 (77)
318 PF06103 DUF948: Bacterial pro 66.2 65 0.0014 27.2 9.2 48 396-443 25-72 (90)
319 PF03915 AIP3: Actin interacti 66.0 1.7E+02 0.0037 32.4 14.5 124 321-458 197-328 (424)
320 KOG2751 Beclin-like protein [S 65.3 1.6E+02 0.0035 33.0 14.0 68 321-392 188-255 (447)
321 PRK10246 exonuclease subunit S 65.2 3.2E+02 0.0069 33.2 39.9 32 166-197 441-472 (1047)
322 COG4477 EzrA Negative regulato 65.0 2.6E+02 0.0057 32.2 30.9 38 166-206 147-184 (570)
323 PF14197 Cep57_CLD_2: Centroso 64.7 53 0.0011 27.6 8.2 37 328-371 3-39 (69)
324 KOG0992 Uncharacterized conser 64.6 2.7E+02 0.0058 32.1 32.5 214 256-494 204-423 (613)
325 PF15450 DUF4631: Domain of un 63.9 2.7E+02 0.0059 31.9 33.1 32 405-436 413-444 (531)
326 PF12238 MSA-2c: Merozoite sur 63.7 21 0.00046 35.9 6.6 16 47-63 120-135 (205)
327 PRK00736 hypothetical protein; 63.5 31 0.00067 28.7 6.6 49 289-348 3-51 (68)
328 PF13094 CENP-Q: CENP-Q, a CEN 63.4 1.3E+02 0.0028 28.1 11.5 67 163-240 18-84 (160)
329 KOG0288 WD40 repeat protein Ti 63.2 1.9E+02 0.0042 32.3 14.1 100 393-494 9-113 (459)
330 PF08647 BRE1: BRE1 E3 ubiquit 63.2 1E+02 0.0023 26.9 12.2 75 398-472 4-78 (96)
331 COG1842 PspA Phage shock prote 63.0 1.8E+02 0.0039 29.5 20.0 45 254-298 29-73 (225)
332 PF01920 Prefoldin_2: Prefoldi 63.0 91 0.002 26.3 9.5 35 398-432 63-97 (106)
333 KOG4302 Microtubule-associated 62.9 1.9E+02 0.0041 33.9 14.6 153 337-510 32-199 (660)
334 PF10805 DUF2730: Protein of u 62.9 48 0.001 29.5 8.1 27 283-309 34-60 (106)
335 PF01920 Prefoldin_2: Prefoldi 62.5 84 0.0018 26.5 9.3 34 332-365 64-97 (106)
336 PF07889 DUF1664: Protein of u 62.4 1.3E+02 0.0028 28.2 11.1 60 422-481 65-124 (126)
337 PF02994 Transposase_22: L1 tr 62.3 18 0.0004 38.5 6.3 26 340-365 140-165 (370)
338 COG3352 FlaC Putative archaeal 62.2 64 0.0014 31.5 9.2 82 146-239 33-129 (157)
339 PF06008 Laminin_I: Laminin Do 61.8 1.8E+02 0.0039 29.2 24.5 27 294-320 181-207 (264)
340 KOG1962 B-cell receptor-associ 61.6 95 0.0021 31.6 10.8 31 397-427 179-209 (216)
341 PF06005 DUF904: Protein of un 61.6 75 0.0016 27.0 8.6 29 404-432 39-67 (72)
342 PF02183 HALZ: Homeobox associ 61.1 23 0.00049 27.6 5.0 41 401-441 2-42 (45)
343 KOG0239 Kinesin (KAR3 subfamil 60.7 3.3E+02 0.0072 31.9 19.8 32 399-430 243-274 (670)
344 PF02403 Seryl_tRNA_N: Seryl-t 60.6 43 0.00094 29.0 7.3 27 244-270 24-50 (108)
345 KOG2991 Splicing regulator [RN 60.5 2.4E+02 0.0051 30.1 21.6 121 386-524 180-310 (330)
346 PF04871 Uso1_p115_C: Uso1 / p 59.8 1.5E+02 0.0033 27.7 13.0 57 385-441 43-100 (136)
347 PF12777 MT: Microtubule-bindi 59.7 48 0.001 34.7 8.8 65 256-320 214-278 (344)
348 PF13747 DUF4164: Domain of un 59.7 1.2E+02 0.0026 26.5 9.8 50 326-389 35-84 (89)
349 PF12808 Mto2_bdg: Micro-tubul 59.0 26 0.00056 28.4 5.1 44 305-348 4-47 (52)
350 KOG0993 Rab5 GTPase effector R 58.9 3.1E+02 0.0067 31.0 29.7 54 9-62 112-178 (542)
351 PF08232 Striatin: Striatin fa 58.8 23 0.00049 32.9 5.6 44 322-365 24-67 (134)
352 PF08657 DASH_Spc34: DASH comp 58.6 41 0.00088 34.7 7.8 69 169-237 177-258 (259)
353 PF09738 DUF2051: Double stran 58.5 1.8E+02 0.0038 30.9 12.5 86 397-489 77-169 (302)
354 KOG1962 B-cell receptor-associ 58.4 1.4E+02 0.0031 30.4 11.3 20 328-347 191-210 (216)
355 PRK10698 phage shock protein P 58.1 2.1E+02 0.0045 28.7 20.0 50 382-431 98-147 (222)
356 PF14988 DUF4515: Domain of un 58.0 2.1E+02 0.0044 28.6 22.5 23 257-279 48-70 (206)
357 KOG4809 Rab6 GTPase-interactin 57.9 3.6E+02 0.0078 31.4 30.2 47 353-403 340-386 (654)
358 PF04728 LPP: Lipoprotein leuc 57.7 52 0.0011 27.1 6.7 43 387-429 7-49 (56)
359 TIGR01069 mutS2 MutS2 family p 57.5 1.9E+02 0.0042 34.0 13.9 36 313-348 498-533 (771)
360 KOG0288 WD40 repeat protein Ti 57.4 2.7E+02 0.0058 31.3 14.0 54 356-413 18-71 (459)
361 PF03915 AIP3: Actin interacti 57.2 2.4E+02 0.0052 31.3 13.8 116 224-348 150-278 (424)
362 PRK00409 recombination and DNA 57.2 2.1E+02 0.0046 33.7 14.1 37 312-348 502-538 (782)
363 PF08172 CASP_C: CASP C termin 57.1 53 0.0011 33.6 8.3 48 330-391 75-122 (248)
364 PF05700 BCAS2: Breast carcino 56.1 2.2E+02 0.0047 28.3 15.4 21 290-310 103-123 (221)
365 PF09486 HrpB7: Bacterial type 56.0 2E+02 0.0044 27.9 17.1 132 272-428 3-138 (158)
366 PRK09343 prefoldin subunit bet 55.9 1.6E+02 0.0035 26.8 12.6 46 328-373 5-50 (121)
367 PF02403 Seryl_tRNA_N: Seryl-t 55.8 1.4E+02 0.003 25.9 11.0 68 280-348 25-92 (108)
368 PF14282 FlxA: FlxA-like prote 54.5 41 0.00088 30.0 6.2 16 356-371 63-78 (106)
369 PTZ00464 SNF-7-like protein; P 54.1 2.4E+02 0.0053 28.3 15.1 30 289-318 16-45 (211)
370 PF10805 DUF2730: Protein of u 53.9 83 0.0018 28.1 8.1 28 329-363 34-61 (106)
371 TIGR02338 gimC_beta prefoldin, 53.4 1.6E+02 0.0035 26.0 11.1 92 278-370 4-107 (110)
372 KOG1850 Myosin-like coiled-coi 53.2 3.4E+02 0.0074 29.7 33.9 60 252-311 76-136 (391)
373 PF06008 Laminin_I: Laminin Do 52.4 2.6E+02 0.0056 28.1 26.3 48 251-298 54-101 (264)
374 PF05384 DegS: Sensor protein 52.4 2.3E+02 0.005 27.5 16.9 50 245-294 73-122 (159)
375 cd00632 Prefoldin_beta Prefold 52.4 1.6E+02 0.0035 25.7 11.9 17 356-372 25-41 (105)
376 PF14992 TMCO5: TMCO5 family 52.3 3.1E+02 0.0068 29.0 15.3 31 422-452 113-143 (280)
377 PF06156 DUF972: Protein of un 52.3 59 0.0013 29.4 6.9 50 288-348 5-54 (107)
378 KOG4572 Predicted DNA-binding 51.9 5.4E+02 0.012 31.6 28.0 111 411-523 1092-1228(1424)
379 PF09744 Jnk-SapK_ap_N: JNK_SA 51.4 2.4E+02 0.0051 27.3 13.7 22 327-348 47-68 (158)
380 COG0497 RecN ATPase involved i 51.2 4.4E+02 0.0096 30.4 20.7 28 395-422 340-367 (557)
381 PF10211 Ax_dynein_light: Axon 51.1 81 0.0017 30.8 8.2 35 325-359 122-156 (189)
382 PF07439 DUF1515: Protein of u 51.1 60 0.0013 30.1 6.8 65 254-318 6-74 (112)
383 PF04102 SlyX: SlyX; InterPro 50.3 65 0.0014 26.7 6.4 22 342-363 2-23 (69)
384 PF09744 Jnk-SapK_ap_N: JNK_SA 50.3 2.5E+02 0.0053 27.2 14.0 47 312-358 78-124 (158)
385 PRK09343 prefoldin subunit bet 49.6 1.8E+02 0.0039 26.5 9.7 20 344-363 85-104 (121)
386 PF07889 DUF1664: Protein of u 49.5 1.9E+02 0.004 27.2 9.9 54 398-451 69-122 (126)
387 KOG4603 TBP-1 interacting prot 49.3 1.2E+02 0.0025 30.5 8.9 64 287-366 89-152 (201)
388 PF15294 Leu_zip: Leucine zipp 49.2 3.5E+02 0.0075 28.7 18.1 22 249-270 132-153 (278)
389 PF04871 Uso1_p115_C: Uso1 / p 48.4 2.3E+02 0.0051 26.4 13.2 23 327-349 81-103 (136)
390 PRK15422 septal ring assembly 48.4 1.9E+02 0.0042 25.5 9.3 51 381-431 23-73 (79)
391 cd00890 Prefoldin Prefoldin is 48.3 71 0.0015 27.9 6.7 28 320-348 78-105 (129)
392 cd07680 F-BAR_PACSIN1 The F-BA 48.2 3.3E+02 0.0072 28.1 14.1 107 254-360 117-223 (258)
393 PRK13169 DNA replication intia 48.1 69 0.0015 29.3 6.7 50 288-348 5-54 (110)
394 PF11180 DUF2968: Protein of u 47.9 2.2E+02 0.0048 28.7 10.6 80 375-454 104-183 (192)
395 PRK10636 putative ABC transpor 47.3 87 0.0019 35.5 8.8 32 286-317 558-589 (638)
396 PF00170 bZIP_1: bZIP transcri 46.0 76 0.0016 25.4 6.0 39 395-433 24-62 (64)
397 PF15372 DUF4600: Domain of un 45.9 1.1E+02 0.0024 29.0 7.8 70 273-352 4-80 (129)
398 TIGR02231 conserved hypothetic 45.9 2.9E+02 0.0064 30.4 12.4 30 398-427 72-101 (525)
399 PF08826 DMPK_coil: DMPK coile 45.8 1.8E+02 0.0038 24.3 8.2 14 355-368 15-28 (61)
400 PF14282 FlxA: FlxA-like prote 45.8 64 0.0014 28.8 6.1 57 248-308 18-75 (106)
401 KOG4196 bZIP transcription fac 45.4 2E+02 0.0043 27.6 9.4 41 482-522 78-118 (135)
402 PF14988 DUF4515: Domain of un 45.1 3.3E+02 0.0071 27.2 23.1 23 311-333 102-124 (206)
403 COG4717 Uncharacterized conser 44.6 6.9E+02 0.015 30.7 30.8 79 338-446 730-809 (984)
404 PF04728 LPP: Lipoprotein leuc 44.5 1.2E+02 0.0026 25.1 6.9 37 398-434 4-40 (56)
405 PF09177 Syntaxin-6_N: Syntaxi 44.1 2.1E+02 0.0046 24.7 9.5 65 261-328 10-74 (97)
406 PRK04406 hypothetical protein; 43.9 1.7E+02 0.0037 25.0 8.0 22 342-363 9-30 (75)
407 COG5185 HEC1 Protein involved 43.8 5.6E+02 0.012 29.5 33.6 71 183-253 292-372 (622)
408 PF14257 DUF4349: Domain of un 43.7 76 0.0016 31.7 6.9 92 213-315 100-193 (262)
409 PF07989 Microtub_assoc: Micro 43.5 1.4E+02 0.003 25.5 7.4 65 331-406 8-73 (75)
410 KOG4571 Activating transcripti 43.5 1.4E+02 0.0029 31.9 8.9 57 427-494 233-289 (294)
411 PF10458 Val_tRNA-synt_C: Valy 42.7 1.3E+02 0.0028 24.5 7.0 7 251-257 6-12 (66)
412 PF05278 PEARLI-4: Arabidopsis 42.6 4.3E+02 0.0094 27.9 12.4 105 356-478 154-260 (269)
413 KOG2077 JNK/SAPK-associated pr 41.7 2.9E+02 0.0063 32.4 11.6 65 283-354 349-423 (832)
414 KOG4572 Predicted DNA-binding 41.7 7.7E+02 0.017 30.5 35.1 78 355-434 954-1032(1424)
415 KOG2264 Exostosin EXT1L [Signa 41.6 79 0.0017 36.7 7.2 33 377-409 101-133 (907)
416 PF12795 MscS_porin: Mechanose 41.5 3.7E+02 0.008 26.7 21.0 34 463-496 188-221 (240)
417 PF10234 Cluap1: Clusterin-ass 41.2 1.4E+02 0.003 31.3 8.5 65 251-315 171-235 (267)
418 COG4717 Uncharacterized conser 41.2 7.7E+02 0.017 30.3 19.2 149 318-482 552-701 (984)
419 PF05615 THOC7: Tho complex su 41.1 2.8E+02 0.0061 25.3 10.1 46 316-361 46-91 (139)
420 PRK02119 hypothetical protein; 40.8 1.9E+02 0.0041 24.5 7.8 24 342-365 7-30 (73)
421 PF09731 Mitofilin: Mitochondr 40.4 5.6E+02 0.012 28.5 19.9 164 220-411 253-441 (582)
422 PF10226 DUF2216: Uncharacteri 40.0 4.2E+02 0.009 26.9 14.6 43 462-512 103-145 (195)
423 KOG4005 Transcription factor X 39.9 2.5E+02 0.0054 29.6 9.9 80 411-490 59-141 (292)
424 PF00170 bZIP_1: bZIP transcri 39.8 1.1E+02 0.0024 24.4 6.1 45 432-483 16-63 (64)
425 PF07851 TMPIT: TMPIT-like pro 39.6 2.5E+02 0.0055 30.3 10.3 17 332-348 70-86 (330)
426 PRK11519 tyrosine kinase; Prov 39.4 6.7E+02 0.014 29.1 14.7 48 445-492 317-364 (719)
427 PRK03947 prefoldin subunit alp 39.2 3E+02 0.0065 25.0 12.7 101 247-369 4-140 (140)
428 PF10481 CENP-F_N: Cenp-F N-te 39.2 5.2E+02 0.011 27.8 13.5 73 405-491 61-133 (307)
429 PF12004 DUF3498: Domain of un 38.6 10 0.00022 42.3 0.0 51 256-309 376-426 (495)
430 PF05791 Bacillus_HBL: Bacillu 38.4 2E+02 0.0044 27.8 8.7 70 249-321 110-179 (184)
431 PF10046 BLOC1_2: Biogenesis o 38.3 2.8E+02 0.006 24.4 11.5 61 419-483 36-96 (99)
432 cd07623 BAR_SNX1_2 The Bin/Amp 38.2 4.1E+02 0.0089 26.3 22.7 179 162-349 9-201 (224)
433 TIGR03752 conj_TIGR03752 integ 38.0 1.8E+02 0.0039 32.8 9.2 51 295-348 91-141 (472)
434 TIGR02499 HrpE_YscL_not type I 38.0 92 0.002 28.4 6.1 43 475-522 14-56 (166)
435 PF06248 Zw10: Centromere/kine 37.9 6.3E+02 0.014 28.4 15.5 17 284-300 46-62 (593)
436 PF04912 Dynamitin: Dynamitin 37.9 5.3E+02 0.012 27.6 13.2 37 284-320 329-365 (388)
437 PRK00295 hypothetical protein; 37.8 1.6E+02 0.0034 24.6 6.8 28 398-425 20-47 (68)
438 TIGR03545 conserved hypothetic 37.6 2.5E+02 0.0053 32.1 10.4 42 297-338 218-259 (555)
439 PF01486 K-box: K-box region; 37.3 2.8E+02 0.006 24.1 9.7 46 419-487 50-95 (100)
440 PRK00736 hypothetical protein; 37.1 1.6E+02 0.0035 24.5 6.8 31 397-427 19-49 (68)
441 PF08581 Tup_N: Tup N-terminal 37.0 2.7E+02 0.0058 24.2 8.3 29 404-432 4-39 (79)
442 PF06428 Sec2p: GDP/GTP exchan 36.7 70 0.0015 28.8 4.9 31 286-316 53-83 (100)
443 PF08581 Tup_N: Tup N-terminal 36.7 2.6E+02 0.0056 24.3 8.1 45 295-339 29-73 (79)
444 KOG1956 DNA topoisomerase III 36.7 2.2E+02 0.0048 33.6 9.8 92 22-117 560-666 (758)
445 PF03999 MAP65_ASE1: Microtubu 36.5 12 0.00025 42.3 0.0 45 261-305 82-126 (619)
446 PF10046 BLOC1_2: Biogenesis o 36.0 3E+02 0.0066 24.2 10.9 25 331-362 74-98 (99)
447 PF12761 End3: Actin cytoskele 35.4 2.9E+02 0.0062 27.9 9.3 31 386-416 163-193 (195)
448 PRK14011 prefoldin subunit alp 35.3 1.2E+02 0.0025 28.9 6.4 55 306-368 65-119 (144)
449 PHA02109 hypothetical protein 35.2 78 0.0017 31.8 5.3 34 404-437 193-226 (233)
450 PF15035 Rootletin: Ciliary ro 35.1 4.5E+02 0.0097 25.9 16.2 46 435-484 119-165 (182)
451 PF10779 XhlA: Haemolysin XhlA 34.9 1.3E+02 0.0028 24.9 5.8 31 288-318 3-33 (71)
452 PHA03011 hypothetical protein; 34.9 2.1E+02 0.0045 26.6 7.6 47 395-441 55-101 (120)
453 PF00509 Hemagglutinin: Haemag 34.2 47 0.001 37.8 4.1 78 398-496 383-460 (550)
454 TIGR00414 serS seryl-tRNA synt 33.9 2E+02 0.0044 31.2 8.7 21 249-269 30-50 (418)
455 smart00502 BBC B-Box C-termina 33.8 2.9E+02 0.0063 23.3 12.7 42 295-336 11-52 (127)
456 PLN02320 seryl-tRNA synthetase 33.8 1.4E+02 0.003 33.8 7.6 22 249-270 93-114 (502)
457 PF15450 DUF4631: Domain of un 33.7 8E+02 0.017 28.3 32.9 25 271-295 295-319 (531)
458 PLN02678 seryl-tRNA synthetase 33.5 1.8E+02 0.0038 32.4 8.3 23 248-270 32-54 (448)
459 COG3524 KpsE Capsule polysacch 33.4 4.7E+02 0.01 28.6 10.9 56 441-496 225-280 (372)
460 TIGR02971 heterocyst_DevB ABC 33.4 5.3E+02 0.011 26.2 15.4 27 292-318 91-117 (327)
461 PF06657 Cep57_MT_bd: Centroso 33.3 2.5E+02 0.0054 24.1 7.5 64 326-402 13-76 (79)
462 PF14739 DUF4472: Domain of un 33.2 3.7E+02 0.0081 24.8 9.0 32 209-240 11-50 (108)
463 PF04642 DUF601: Protein of un 33.2 6.3E+02 0.014 27.0 17.0 78 231-318 216-298 (311)
464 PF05529 Bap31: B-cell recepto 32.9 1.8E+02 0.0038 27.9 7.3 40 381-420 152-191 (192)
465 KOG2751 Beclin-like protein [S 32.5 7.1E+02 0.015 28.2 12.5 49 324-372 177-225 (447)
466 TIGR02301 conserved hypothetic 32.5 47 0.001 31.1 3.2 44 21-69 58-102 (121)
467 PRK05431 seryl-tRNA synthetase 32.2 2E+02 0.0043 31.4 8.4 24 247-270 26-49 (425)
468 PHA03332 membrane glycoprotein 32.2 7.8E+02 0.017 31.0 13.5 82 398-488 899-980 (1328)
469 KOG3850 Predicted membrane pro 32.2 7.7E+02 0.017 27.7 16.8 118 327-495 264-381 (455)
470 KOG2629 Peroxisomal membrane a 31.9 2.8E+02 0.006 29.7 9.0 52 334-392 119-170 (300)
471 COG4913 Uncharacterized protei 31.9 1E+03 0.022 29.1 25.0 45 355-409 787-831 (1104)
472 TIGR00020 prfB peptide chain r 31.8 6E+02 0.013 27.8 11.7 29 289-317 12-42 (364)
473 PF05546 She9_MDM33: She9 / Md 31.8 5.7E+02 0.012 26.1 13.7 156 284-486 32-199 (207)
474 PF02388 FemAB: FemAB family; 31.7 1.1E+02 0.0024 32.9 6.3 52 258-313 244-295 (406)
475 PRK15396 murein lipoprotein; P 31.5 2E+02 0.0044 25.0 6.7 46 385-430 27-72 (78)
476 KOG4438 Centromere-associated 31.2 8.1E+02 0.018 27.7 27.6 112 247-365 171-283 (446)
477 PF05852 DUF848: Gammaherpesvi 31.2 4.4E+02 0.0096 25.5 9.5 49 252-301 57-106 (146)
478 KOG4001 Axonemal dynein light 30.4 3.7E+02 0.0081 27.8 9.3 22 327-348 232-253 (259)
479 cd00584 Prefoldin_alpha Prefol 30.3 1.2E+02 0.0026 27.1 5.3 38 256-297 6-43 (129)
480 PF03961 DUF342: Protein of un 30.1 2.6E+02 0.0056 30.4 8.8 32 331-362 376-407 (451)
481 PF00957 Synaptobrevin: Synapt 30.1 3.3E+02 0.0072 22.8 8.4 44 412-455 4-47 (89)
482 KOG0239 Kinesin (KAR3 subfamil 30.0 9.7E+02 0.021 28.2 19.3 39 300-338 109-147 (670)
483 PF05837 CENP-H: Centromere pr 30.0 4E+02 0.0087 23.8 11.0 20 329-348 2-21 (106)
484 PRK15422 septal ring assembly 30.0 3.9E+02 0.0085 23.6 8.5 26 377-402 47-72 (79)
485 PF09539 DUF2385: Protein of u 29.8 57 0.0012 29.4 3.2 44 21-69 33-77 (96)
486 PF14389 Lzipper-MIP1: Leucine 29.4 1.8E+02 0.0038 25.4 6.1 49 268-316 13-86 (88)
487 PF04912 Dynamitin: Dynamitin 29.3 7.3E+02 0.016 26.5 22.2 19 284-302 209-227 (388)
488 PF15397 DUF4618: Domain of un 29.2 6.9E+02 0.015 26.2 26.9 14 307-320 65-78 (258)
489 PRK10361 DNA recombination pro 29.1 8.9E+02 0.019 27.5 21.9 26 443-468 169-194 (475)
490 COG3524 KpsE Capsule polysacch 29.1 8E+02 0.017 26.9 14.4 106 213-330 155-276 (372)
491 cd00176 SPEC Spectrin repeats, 29.0 4.2E+02 0.0091 23.6 19.8 31 381-411 144-174 (213)
492 PRK02793 phi X174 lysis protei 29.0 2.8E+02 0.0062 23.3 7.0 17 341-357 5-21 (72)
493 PF07200 Mod_r: Modifier of ru 28.1 4.7E+02 0.01 23.9 13.5 137 376-527 7-143 (150)
494 PF12998 ING: Inhibitor of gro 27.9 3.7E+02 0.008 22.7 10.0 89 420-515 10-98 (105)
495 PLN02320 seryl-tRNA synthetase 27.5 2.8E+02 0.0061 31.5 8.7 21 328-348 135-155 (502)
496 PF09766 FimP: Fms-interacting 27.4 7.9E+02 0.017 26.3 14.6 165 154-324 1-194 (355)
497 PF05700 BCAS2: Breast carcino 27.3 6.3E+02 0.014 25.1 15.4 122 346-484 99-220 (221)
498 PRK10803 tol-pal system protei 27.3 2E+02 0.0044 29.3 7.0 57 247-303 38-101 (263)
499 TIGR00414 serS seryl-tRNA synt 27.0 3.4E+02 0.0074 29.6 9.0 72 285-363 31-102 (418)
500 PRK04325 hypothetical protein; 27.0 3.2E+02 0.007 23.1 7.0 52 379-430 5-56 (74)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=99.94 E-value=1.1e-27 Score=198.73 Aligned_cols=59 Identities=59% Similarity=0.970 Sum_probs=58.3
Q ss_pred CCccchhHHHhHHHHHHHHHHHHHHhh-ccccccc------ccchhHHHHHHHHHHHHHHHHHHhh
Q 037185 2 SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSK------FHRPELTAHIEDFYHLYQSLAERYD 60 (533)
Q Consensus 2 s~~~skWl~~nL~~me~~vk~mlklie-d~dSfak------~~RpeLi~~vee~yr~yraLAeryd 60 (533)
+|+|||||++||+|||.+||.|||||+ ||||||+ ++||+||++||+|||+||+||||||
T Consensus 9 ~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 9 SPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999 9999999 9999999999999999999999998
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.22 E-value=4.6e-07 Score=102.15 Aligned_cols=123 Identities=19% Similarity=0.281 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh------hhhhhhhhhHHHHHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA------RSRDNHIGQIEEHSRKLHME 454 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~------~sRd~~I~qme~hl~qL~~e 454 (533)
+..++..+..++......+..++..+..+..+++.+......+..++..+...+ ...+..+.++..++..|.-+
T Consensus 887 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 966 (1164)
T TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444433333332221 11122345666677766654
Q ss_pred HHHH-------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 037185 455 HAEL-------IAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQ 503 (533)
Q Consensus 455 ~~~l-------~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQ 503 (533)
...+ +..-+.+......|..+...|++....-...|-+.-..+++++..
T Consensus 967 i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~ 1022 (1164)
T TIGR02169 967 IRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022 (1164)
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 355566667777777888888888888888888888777777665
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.16 E-value=1.8e-06 Score=96.73 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=10.6
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
..++.+.+++..+..++..|+.++
T Consensus 475 ~~~~~~~~~~~~le~~l~~~~~~~ 498 (880)
T PRK02224 475 ERVEELEAELEDLEEEVEEVEERL 498 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.15 E-value=1.9e-06 Score=97.23 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=14.7
Q ss_pred HHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 174 VIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 174 iielEdELreaneKL~~sEEe~~rlk 199 (533)
+..|...+..+...|....+.+.++.
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~ 190 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLD 190 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666555555553
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.14 E-value=8.2e-07 Score=99.49 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk 199 (533)
.+...+..++.++..++.++...+.+...+.
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~ 704 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELR 704 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444444443
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.11 E-value=4.4e-06 Score=93.76 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=13.5
Q ss_pred HHhhHHHHHHHHHHHhhhHHHHHhhHH
Q 037185 174 VIQYEDKLRVLNLSLQLSEEEVARLKS 200 (533)
Q Consensus 174 iielEdELreaneKL~~sEEe~~rlk~ 200 (533)
+..|...+..+...|....+.+..++.
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ 193 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLED 193 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.09 E-value=3.9e-06 Score=97.98 Aligned_cols=287 Identities=22% Similarity=0.307 Sum_probs=142.5
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHH
Q 037185 209 AKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLK 288 (533)
Q Consensus 209 a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~k 288 (533)
+.+++...+..+.....+...++.++..++. ++..+.+.+..++.++..++.++..+.... .+
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~ 776 (1163)
T COG1196 714 LERQLEELKRELAALEEELEQLQSRLEELEE----------ELEELEEELEELQERLEELEEELESLEEAL-------AK 776 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 3334444444444444555555555554442 233334444444444444444444444333 33
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHH---hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAE---EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAe---eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
|..++..+..........+.++..++.++. ..+..+..+....+..|..+...++.++.+|+..+..+...+..++.
T Consensus 777 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~ 856 (1163)
T COG1196 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444444333333333334444433333 11122222333333444444455555555555555555555555555
Q ss_pred HHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHH-------HHHHHHHHHhhhhh
Q 037185 366 EKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEIN-------AKVNTLMAEARSRD 438 (533)
Q Consensus 366 EK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~-------~kv~~L~ad~~sRd 438 (533)
...++.. +..+++.++..+..++......+..++..+..+..++..+..+...+. .++..+...+..+.
T Consensus 857 ~~~~~~~----~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 932 (1163)
T COG1196 857 ELEELKE----ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE 932 (1163)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 333344444444444444444444444444444444333333333333 33333333333322
Q ss_pred hhhhh---------HHHHHHHHHHH-------HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 439 NHIGQ---------IEEHSRKLHME-------HAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIR 502 (533)
Q Consensus 439 ~~I~q---------me~hl~qL~~e-------~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIR 502 (533)
..+.. .+..+..|.-+ --.-|.+.+.+.+-...|..+...|++..+.=...|.+.-..++++..
T Consensus 933 ~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~ 1012 (1163)
T COG1196 933 EELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFK 1012 (1163)
T ss_pred hhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22333333322 123467778888999999999999999999999999999999999999
Q ss_pred HHhhhhH-hhhhhHH
Q 037185 503 QLCFSLE-HYRSGYQ 516 (533)
Q Consensus 503 QLCfsle-hyr~~y~ 516 (533)
..|..+. +|+.-|.
T Consensus 1013 ~~f~~In~~F~~if~ 1027 (1163)
T COG1196 1013 ETFDKINENFSEIFK 1027 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 8776553 3333333
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=99.01 E-value=3.1e-05 Score=86.96 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 037185 384 EINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASE 463 (533)
Q Consensus 384 Eie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~ 463 (533)
.++...+.+.+....++.+.+.+..|+..++....+.+.+.+....+..++.+-..++.+++..+..|. ....+.....
T Consensus 524 ~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~ 602 (880)
T PRK02224 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIA 602 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344444455555555566666666666666555554555555555554444555555555555555444 3334444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 037185 464 SSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQL 504 (533)
Q Consensus 464 ~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQL 504 (533)
.+...+.+|+..+.+|+.. +..+.+.-+++|.-|.+|
T Consensus 603 ~~~~~~~~~~~~~~~l~~~----~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 603 DAEDEIERLREKREALAEL----NDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333 223444444455555544
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=9e-06 Score=96.04 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh----hHh
Q 037185 302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH----EAQ 377 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~----~~q 377 (533)
.+-.++..+...+.++..++.|=+..+..-.+.+.+.....+.++.+....++.+...+.++..-..++.... ..+
T Consensus 892 el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~q 971 (1311)
T TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444444444444444444444444444444444444444445555555544444433211 112
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH--HHHhhhhhhhhhhHHHHHHH-----
Q 037185 378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTL--MAEARSRDNHIGQIEEHSRK----- 450 (533)
Q Consensus 378 ~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L--~ad~~sRd~~I~qme~hl~q----- 450 (533)
...+..++..+...+.+...++..++..|..++.+++.+..++..+..-+..+ ...+..-..+|..|+.++.+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 23333444444444445555555555555555555555555555555555554 44444444444444444433
Q ss_pred -------HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 451 -------LHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 451 -------L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
|.-++..|.+....+...+..|..++..|+.++
T Consensus 1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=2.7e-05 Score=87.04 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-----HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH-----MEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~-----~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
+...+...+..+...+..-..+|.+++..+..|. -.|..+-.....+...+.++......++..++
T Consensus 620 ~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~ 690 (880)
T PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555554 34444444444444444444444444444443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.99 E-value=1.8e-05 Score=96.46 Aligned_cols=281 Identities=21% Similarity=0.240 Sum_probs=202.9
Q ss_pred hhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh--------------hhhH
Q 037185 240 RLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS--------------DRNN 305 (533)
Q Consensus 240 ~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls--------------~~d~ 305 (533)
....++.-..++..++..+++|++++..++++...-++...+-.+...+|..-+..++..|. -++.
T Consensus 1081 l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~ 1160 (1930)
T KOG0161|consen 1081 LQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA 1160 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444566777888899999999988888887777766666666666666655555554 2233
Q ss_pred HHHH------------------HHHHHhhH--------------HhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037185 306 EVAE------------------LKIALSDA--------------EEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQG 353 (533)
Q Consensus 306 EIr~------------------LK~~lsDA--------------eeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~ 353 (533)
+|.+ ++...+|+ -+++-.+|+.++.++..|..+..++...-...+..+
T Consensus 1161 e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~ 1240 (1930)
T KOG0161|consen 1161 EVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD 1240 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 3333 33222221 235667888888888888888888888878888888
Q ss_pred hhHHHHHHHhHHHHhhhhch---hhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhH-------HhHHHH
Q 037185 354 KALEDKIRQCETEKMEITGL---HEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLM-------AEKDEI 423 (533)
Q Consensus 354 ~~lEdeirqleaEK~E~~~~---~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~-------~EK~~l 423 (533)
+.+|+++..+...-.++..+ +.+|...++.|+..+.-.+.+.+..++.+++....+...++.+. .++..+
T Consensus 1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l 1320 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSAL 1320 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876666653 24578899999999999999999999999988777777666554 478888
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 424 NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR-VKELENEVDRQRMVILDAAEEKREAIR 502 (533)
Q Consensus 424 ~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r-v~eLE~Eve~Q~~~i~e~aEeKREAIR 502 (533)
.+.+.+|--|++.--+++..=.+-.+.|+..+.+..+++...++...++... ..++|+.-.+...-+.+ +++--++-=
T Consensus 1321 ~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~-~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1321 ENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQE-LEEQIEAAN 1399 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 8888888888888888887777777888899999999999998888887765 78888776665555444 334444555
Q ss_pred HHhhhhHhhhhh-HHHHHHH
Q 037185 503 QLCFSLEHYRSG-YQELRQA 521 (533)
Q Consensus 503 QLCfslehyr~~-y~~L~~~ 521 (533)
+.|-+|+--|++ -+.|..+
T Consensus 1400 ~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1400 AKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 777787777766 3444433
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.93 E-value=1.9e-05 Score=96.22 Aligned_cols=159 Identities=23% Similarity=0.311 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-------hhh
Q 037185 232 NYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-------DRN 304 (533)
Q Consensus 232 ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-------~~d 304 (533)
.+|+.|+.....++ +.+.+|...-+.++..+..++.++++.+.|.+.-.+...+|...+..++..|. +++
T Consensus 964 ~~~~~l~~e~~~~~---e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E 1040 (1930)
T KOG0161|consen 964 NKLKNLEEEINSLD---ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE 1040 (1930)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 33333333334444444444455555444444444444444444444443333 555
Q ss_pred HHHHHHHHHHhhHHhhhc-----------------hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Q 037185 305 NEVAELKIALSDAEEKFT-----------------LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEK 367 (533)
Q Consensus 305 ~EIr~LK~~lsDAeeK~s-----------------~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK 367 (533)
..+++|...+.++.+.+. .|-.++++.+-.++...+.+..+.++++.++.-+++++..-.+..
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665554 233333444444444444444444444444444555544444444
Q ss_pred hhhhchhhHhhhhhhhHHHHHHHHHhhhhh
Q 037185 368 MEITGLHEAQERGMQSEINQLKVEVCERDN 397 (533)
Q Consensus 368 ~E~~~~~~~q~~~L~gEie~Lk~El~~~~~ 397 (533)
++++. +..+|.++++.|+.++.+.+.
T Consensus 1121 ~K~ek----~r~dL~~ele~l~~~Lee~~~ 1146 (1930)
T KOG0161|consen 1121 AKAER----QRRDLSEELEELKEELEEQGG 1146 (1930)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 45544 778888888888888877633
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.91 E-value=4.6e-05 Score=89.30 Aligned_cols=207 Identities=21% Similarity=0.285 Sum_probs=97.5
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhh-------
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKF------- 321 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~------- 321 (533)
+++..+.+.+.+++..+....+.|..++.++..-..++.+++...-.++..+..++.+|..++........+.
T Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1163)
T COG1196 246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666667777777777777777766666655555555555555444544444444444444333321
Q ss_pred ---chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhH
Q 037185 322 ---TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNR 398 (533)
Q Consensus 322 ---s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~ 398 (533)
.-......+++.........+......+...+...+.....+..+..+.-.-+......+..++..+..++...+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 405 (1163)
T COG1196 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222112222222233322222223333331111111111111222333444444444445455555
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
|..+...++.+..+++.+..+...+.+++..+..++..-+..|..++.++..++-..
T Consensus 406 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (1163)
T COG1196 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555556666666666666666666666666666666555444
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=0.0001 Score=87.26 Aligned_cols=152 Identities=13% Similarity=0.219 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR 303 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~ 303 (533)
..++..|+++|++|+.......- ...+..+++.+..++.+++.+..++..+...++.-..++..||.+|..
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e-------- 868 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE-------- 868 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 66677777777777765543321 111222233333333333333333333333333333333444333333
Q ss_pred hHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhh
Q 037185 304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQS 383 (533)
Q Consensus 304 d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~g 383 (533)
++..+..++. ++- .+.++..+|..|.+++..+...+.+.+..+.-+..++..+.+++.++..-.......+++
T Consensus 869 ---l~~~klkl~~---~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1311)
T TIGR00606 869 ---LKSEKLQIGT---NLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQD 941 (1311)
T ss_pred ---HHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333332 333 566777777777777777777777666666667777777766665555444444555555
Q ss_pred HHHHHHHH
Q 037185 384 EINQLKVE 391 (533)
Q Consensus 384 Eie~Lk~E 391 (533)
++..++..
T Consensus 942 ~~~~~~~~ 949 (1311)
T TIGR00606 942 KVNDIKEK 949 (1311)
T ss_pred HHHHHHHH
Confidence 55554443
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.80 E-value=2.4e-05 Score=88.77 Aligned_cols=307 Identities=17% Similarity=0.197 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh------------------hhhhhhhhhHHhHHHHHHHHHHHHHHHHHH-
Q 037185 177 YEDKLRVLNLSLQLSEEEVARLKSELHSQIE------------------SAKRDVNIKEADLEMERRQVFELQNYVREL- 237 (533)
Q Consensus 177 lEdELreaneKL~~sEEe~~rlk~el~k~~~------------------~a~~dl~i~k~kLe~ee~ei~~LQ~~v~EL- 237 (533)
+-.|.--.+..|+....+...+.+++.+|.+ .....+.+.....+.....|..|| .+|
T Consensus 8 ~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq---eELr 84 (775)
T PF10174_consen 8 LQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ---EELR 84 (775)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH---HHHH
Confidence 3334444456666666666666666666431 333345566666666666666666 333
Q ss_pred ------------HHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhH
Q 037185 238 ------------ETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNN 305 (533)
Q Consensus 238 ------------E~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~ 305 (533)
+.+......-.. +-+.++.+..|+++.+.++.++.-++. .+-++|.+|..++..|..++.
T Consensus 85 ~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~-------~lE~~q~~~e~~q~~l~~~~e 156 (775)
T PF10174_consen 85 AQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRK-------TLEELQLRIETQQQTLDKADE 156 (775)
T ss_pred HhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 333445555666666666665555553 456789999999999999999
Q ss_pred HHHHHHHHHhhHHh--hhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------------HHHHHHh
Q 037185 306 EVAELKIALSDAEE--KFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKAL--------------------EDKIRQC 363 (533)
Q Consensus 306 EIr~LK~~lsDAee--K~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~l--------------------Edeirql 363 (533)
+|+.|..+|-.+-- +-..+-..+..-|..+--...+|+..|..|+-....+ ..-|..-
T Consensus 157 ei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K 236 (775)
T PF10174_consen 157 EIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK 236 (775)
T ss_pred HHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH
Confidence 99999998821100 1112223345567788888899999999998877444 2222222
Q ss_pred HHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185 364 ETEKMEITGLHEAQERGMQSEINQLKVEVCERDN-------RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS 436 (533)
Q Consensus 364 eaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~-------~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s 436 (533)
.+..+.++. ..+.|..||..|+....-... .++.-......+|.++|.+.-|.+.-+..+-+|-+.+.+
T Consensus 237 d~ki~~lEr----~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~ 312 (775)
T PF10174_consen 237 DTKIASLER----MLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLET 312 (775)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 445578888888665543333 445545555667788999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 037185 437 RDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKR 498 (533)
Q Consensus 437 Rd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKR 498 (533)
..+.-..|=.||.-|+..-+..=..+..+...|+.||.++.+=+...+++...|....++|-
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~ 374 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS 374 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888999998888888888777777777777653
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.74 E-value=0.00013 Score=83.09 Aligned_cols=272 Identities=21% Similarity=0.256 Sum_probs=147.8
Q ss_pred hhHHhHHHH--HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 037185 215 IKEADLEME--RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQER 292 (533)
Q Consensus 215 i~k~kLe~e--e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqer 292 (533)
|...+++++ ..++..+|..+.. ..+.....-.+|..+++.+...+.+-..+|-||..++.+|+.--..+-|.+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~---~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLET---LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666 4467888844444 44444444688999999999999999999999999999998887777777777
Q ss_pred HHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----------
Q 037185 293 IAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIR----------- 361 (533)
Q Consensus 293 i~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeir----------- 361 (533)
|..+...++....+|.+|+..+--.+.| |..|+..+..|+..|++-+.+.....+.+.
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~k-----------i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~ 434 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERK-----------INVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEA 434 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 7777777777777777766665533333 333333333333333322222221222221
Q ss_pred -----HhHHHHhhhhchh----hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHH-------HH
Q 037185 362 -----QCETEKMEITGLH----EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEI-------NA 425 (533)
Q Consensus 362 -----qleaEK~E~~~~~----~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l-------~~ 425 (533)
....++.-...-+ +-.....+.+++.++.++.+....|..|...+++-..-++.+..+.+.| ++
T Consensus 435 ~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s 514 (775)
T PF10174_consen 435 LETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDS 514 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhh
Confidence 1111111111100 0011222333333333333333344444444333333333333322222 34
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHH-------------HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 426 KVNTLMAEARSRDNHIGQIEEHSRK-------------LHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 426 kv~~L~ad~~sRd~~I~qme~hl~q-------------L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
.|.+|-..+....+++..|+..+.. |.-+-+..-..++.++.-|+.|...+.++|++-.-.-..|.+
T Consensus 515 ~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~ 594 (775)
T PF10174_consen 515 EIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGE 594 (775)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555665655666666655543 233334445556667777788887777777775555555555
Q ss_pred hhhHHHHH
Q 037185 493 AAEEKREA 500 (533)
Q Consensus 493 ~aEeKREA 500 (533)
.+.+=++|
T Consensus 595 LekeLek~ 602 (775)
T PF10174_consen 595 LEKELEKA 602 (775)
T ss_pred HHHHHHHh
Confidence 55543333
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.00042 Score=77.75 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 408 SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
.++.++..+..+++.+..++..|.+....-...|.+++..+..|.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555443
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=0.00034 Score=81.81 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=164.2
Q ss_pred hHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH---hhhchhHhhhhHHHHHHHH
Q 037185 261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE---EKFTLDKAQLQSEMFCLLE 337 (533)
Q Consensus 261 LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe---eK~s~EKa~l~aEiskL~E 337 (533)
+...-..+.+...+|+.+|..=-++-.+.+++++++..++..+..+|.+.+...++++ ++...+...++.||.+|.+
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 4444445555666777777776678889999999999999999999998888777654 6777788888899998887
Q ss_pred HHHHHHHHHH----HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185 338 KQALLDARLK----EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY 413 (533)
Q Consensus 338 ~~~~Le~kL~----e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~ 413 (533)
....++..|. ++.-.-..+-+++..++.+-+-... +-.+..|++--...++......-+++-+.+..++.++
T Consensus 455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~----~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L 530 (1293)
T KOG0996|consen 455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK----QVNEARSELDVAESELDILLSRHETGLKKVEELKGKL 530 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554 4555555566777777776666554 7778888888888888888888888999999999999
Q ss_pred HHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 037185 414 DMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELEN 481 (533)
Q Consensus 414 e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~ 481 (533)
...++.+..-++.|..+++++.++..++++.+..|-+++.+. .++...+..+|.+|.|+-.
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~-------~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEE-------RNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 4444455555555555443
No 19
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=0.00045 Score=76.11 Aligned_cols=278 Identities=15% Similarity=0.223 Sum_probs=159.4
Q ss_pred HHHhhhHHHHHhhHHHHHHhhh--------hhhhh--hhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 037185 186 LSLQLSEEEVARLKSELHSQIE--------SAKRD--VNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKEL 255 (533)
Q Consensus 186 eKL~~sEEe~~rlk~el~k~~~--------~a~~d--l~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~ 255 (533)
.|++.++++.++++.+..|+.+ ..+.+ ++..+..++.-+.|+..||..+.+|....+.=+||.+++.+.-
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn 338 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMN 338 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3456677777778777777664 33333 4556666666688888888888888888777789988887765
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh--hchhHhhhhHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK--FTLDKAQLQSEMF 333 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK--~s~EKa~l~aEis 333 (533)
-....|+..|..++.+.+.|..+.=.. -.+.++.+..+++.+-+.+.-|+.|+-..+.-.-+ +.||-+..
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~---~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~----- 410 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVWEL---KLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAAT----- 410 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcc-----
Confidence 566666666666666555554443111 23347788888998999999999988874444443 66665542
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185 334 CLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY 413 (533)
Q Consensus 334 kL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~ 413 (533)
....=+....-.|.+| |..+..++.+.+.+++ +|+..++.+...+.++......+.=.+..+..++
T Consensus 411 ~~~d~k~~V~~~l~el---~~ei~~~~~~~~~~~~-----------tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~ 476 (581)
T KOG0995|consen 411 NGVDLKSYVKPLLKEL---LDEISEELHEAENELE-----------TLQEHFSNKASTIEEKIQILGEIELELKKAESKY 476 (581)
T ss_pred ccccchhHhHHHHHHH---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222333334443 2334444444444333 4455555444444333333333333333334444
Q ss_pred HHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037185 414 DMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDA 493 (533)
Q Consensus 414 e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~ 493 (533)
++...|-.... +.=+-+|.+|++||++|-+.--.-+..+ -..|. .++.--..++-.
T Consensus 477 ~~~k~e~eee~----------~k~~~E~e~le~~l~~l~l~~~~~m~~a----------~~~v~----s~e~el~~~~~~ 532 (581)
T KOG0995|consen 477 ELKKEEAEEEW----------KKCRKEIEKLEEELLNLKLVLNTSMKEA----------EELVK----SIELELDRMVAT 532 (581)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----HHHHHHHHHHHH
Confidence 44444333222 2346689999999999876542222222 22222 233333344555
Q ss_pred hhHHHHHH-HHHhhhhH
Q 037185 494 AEEKREAI-RQLCFSLE 509 (533)
Q Consensus 494 aEeKREAI-RQLCfsle 509 (533)
.+++|.+| -||-|-|+
T Consensus 533 ~~eer~ki~~ql~~~i~ 549 (581)
T KOG0995|consen 533 GEEERQKIAKQLFAVID 549 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777 77776554
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.54 E-value=0.00014 Score=71.44 Aligned_cols=225 Identities=19% Similarity=0.267 Sum_probs=137.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHH---HhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 037185 166 TYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELH---SQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLS 242 (533)
Q Consensus 166 ~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~---k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~ 242 (533)
..++...++..++.+|..++.++...|.++.-+..-+. ..+.-+-.-+.....+|...++......+.++.|+..
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r-- 86 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR-- 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Confidence 44567778888888888888888888888877752222 1111222224566667777777777766666667644
Q ss_pred cchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc
Q 037185 243 ESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT 322 (533)
Q Consensus 243 ~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s 322 (533)
.....+.+..|..+|..+...+....+|++.=-+.+.-+...+.+....+...+..|..|+..+..+..+
T Consensus 87 --------~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~-- 156 (237)
T PF00261_consen 87 --------EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN-- 156 (237)
T ss_dssp --------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--
Confidence 3445577888888888888877777778765556566666777777776667777777766666644433
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
+-.|.-.......+...++.+++.|..+++..+.-- ..-+..|..|
T Consensus 157 ---------lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra-------------------------e~aE~~v~~L 202 (237)
T PF00261_consen 157 ---------LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA-------------------------EFAERRVKKL 202 (237)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
T ss_pred ---------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
Confidence 222222222222333332222233444444333311 1233466677
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185 403 NKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS 436 (533)
Q Consensus 403 Nk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s 436 (533)
.+.|+.|..++.........+...++..++++++
T Consensus 203 e~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 203 EKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777777777654
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.52 E-value=0.00073 Score=82.20 Aligned_cols=331 Identities=19% Similarity=0.219 Sum_probs=205.8
Q ss_pred HhhHHHHHHHHHHHhhhHHHHHhhHHH--------------HHHhhh------hhhhhhhhhHHhHHHHH-HHHHHHHHH
Q 037185 175 IQYEDKLRVLNLSLQLSEEEVARLKSE--------------LHSQIE------SAKRDVNIKEADLEMER-RQVFELQNY 233 (533)
Q Consensus 175 ielEdELreaneKL~~sEEe~~rlk~e--------------l~k~~~------~a~~dl~i~k~kLe~ee-~ei~~LQ~~ 233 (533)
..+=+||.-+|+|+..++-++..||.+ +.++.+ .-+.++.+...-++.++ .....+.++
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~ 806 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR 806 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999999888888622 111111 22222333333333331 112222233
Q ss_pred HHHHHHhhhcchHHH-HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 037185 234 VRELETRLSESNFEI-ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI 312 (533)
Q Consensus 234 v~ELE~~~~~l~~s~-~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~ 312 (533)
+.+|+-.+..|+=.. +++-.+.+.+.++--+|+.++.-|.++......-...+..++.+|+.++..+++++.+|+..++
T Consensus 807 i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 807 IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444433332222111 2233344567777778888888888888888888888999999999999999999999999888
Q ss_pred HHhhHHhhhchh-HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185 313 ALSDAEEKFTLD-KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE 391 (533)
Q Consensus 313 ~lsDAeeK~s~E-Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E 391 (533)
...+-..+-..+ =+.+-..+.+.+++.+.|..+|+.-..+++-..+...-.+..-..+.--|+-.+-.+-..|+.+..+
T Consensus 887 ~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k 966 (1822)
T KOG4674|consen 887 QLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKK 966 (1822)
T ss_pred HHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 877666541111 2233334667777777778887765555554444444433333333333444555666666667777
Q ss_pred HhhhhhHHHHHHHHHHHHHH-----------HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH--------
Q 037185 392 VCERDNRIEALNKIMDSLKL-----------KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH-------- 452 (533)
Q Consensus 392 l~~~~~~Ie~LNk~id~Lk~-----------k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~-------- 452 (533)
+-..+..|..|+..+..|.. +...+..+++.|.+.+..+..-...-+..|..+-..+...+
T Consensus 967 ~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen 967 ITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766664 24455566666666666655555555555544444444432
Q ss_pred ------HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHh
Q 037185 453 ------MEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDA---AEEKREAIRQLC 505 (533)
Q Consensus 453 ------~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~---aEeKREAIRQLC 505 (533)
+.|+.++..-..++..+......+..|.+..+.+-...++. -.+|+.|.+|.-
T Consensus 1047 ~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~ 1108 (1822)
T KOG4674|consen 1047 KYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEV 1108 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHH
Confidence 78888888888888888889999999988887776666543 356777877753
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=98.51 E-value=0.0048 Score=70.18 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhhhhHh
Q 037185 48 FYHLYQSLAERYDHLTGEL 66 (533)
Q Consensus 48 ~yr~yraLAeryd~~~~el 66 (533)
|-.+|..+-+.++.+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~ei 182 (895)
T PRK01156 164 LERNYDKLKDVIDMLRAEI 182 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555543
No 23
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=8.1e-05 Score=85.77 Aligned_cols=236 Identities=23% Similarity=0.346 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 219 DLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET 298 (533)
Q Consensus 219 kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt 298 (533)
++-.-+.++...|+.+..|+..+.. +.......+.|+.+|++.+-+.+..+++++ -.+-.++++++..++.
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~-------le~~~~kf~~l~~ql~l~~~~l~l~~~r~~--~~e~~~~~~~~~~~~e 748 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKS-------LEAQSQKFRDLKQQLELKLHELALLEKRLE--QNEFHKLLDDLKELLE 748 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cChHhhHHHHHHHHHH
Confidence 3334456666666555555543322 233456788999999999999999999884 3457889999999999
Q ss_pred chhhhhHHHHHHHHHHhhHHhhh-chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----HHHHhhhhch
Q 037185 299 NLSDRNNEVAELKIALSDAEEKF-TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC----ETEKMEITGL 373 (533)
Q Consensus 299 ~Ls~~d~EIr~LK~~lsDAeeK~-s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql----eaEK~E~~~~ 373 (533)
.+.+...+|.+....+-+++.++ .+||. +.+..+.-+.+|++ ++.+|+.+ ++...+.+.
T Consensus 749 ~v~e~~~~Ike~~~~~k~~~~~i~~lE~~--------~~d~~~~re~rlkd-------l~keik~~k~~~e~~~~~~ek- 812 (1174)
T KOG0933|consen 749 EVEESEQQIKEKERALKKCEDKISTLEKK--------MKDAKANRERRLKD-------LEKEIKTAKQRAEESSKELEK- 812 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHhhhhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999998 67764 45566777777777 44444333 233333332
Q ss_pred hhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 037185 374 HEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHM 453 (533)
Q Consensus 374 ~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~ 453 (533)
+.---+.|+.|++.|+-++...+.+...++..++.|++++..|....+.+...+..+.++++.=+.++...+..+.-+--
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT 892 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 22234578999999999999999999999999999999999999999999999999999999999988888887765543
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 454 EHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 454 e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
.. +......+.....+.+|+.+|.+-
T Consensus 893 ~~-------e~~~~e~~~~~l~~kkle~e~~~~ 918 (1174)
T KOG0933|consen 893 SQ-------EKCLSEKSDGELERKKLEHEVTKL 918 (1174)
T ss_pred HH-------HHHHHHhhcccchHHHHHhHHHHh
Confidence 33 333333455556667777776553
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.0057 Score=69.56 Aligned_cols=21 Identities=0% Similarity=0.154 Sum_probs=8.5
Q ss_pred hhhhHHHHHhhhhhHHHHhhh
Q 037185 258 THQLQGQLKLAQDDVTTLNAK 278 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~K 278 (533)
++....++....+++..++.+
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 25
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=0.0023 Score=74.19 Aligned_cols=324 Identities=18% Similarity=0.263 Sum_probs=164.3
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHH--HHHHHHHHHHHHHHHH
Q 037185 162 EANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEME--RRQVFELQNYVRELET 239 (533)
Q Consensus 162 ~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~e--e~ei~~LQ~~v~ELE~ 239 (533)
++..-.++--++-......|+-..++|+.+|++ |.+|.+|--+. =.+.-||+. ..++.+.-+.+..|+.
T Consensus 174 eSlkim~ET~qK~ekI~ell~yieerLreLEeE----KeeL~~Yqkld-----k~rr~lEYtiYdrEl~E~~~~l~~le~ 244 (1200)
T KOG0964|consen 174 ESLKIMEETKQKREKINELLKYIEERLRELEEE----KEELEKYQKLD-----KERRSLEYTIYDRELNEINGELERLEE 244 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHH-----HhHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 333334444455556666788999999999998 55555553211 000001111 1111111111222222
Q ss_pred hhh-----------cchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh---HHHH----HHHHHHHHHHHHHhhchh
Q 037185 240 RLS-----------ESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKL---DYER----MQVLKFQERIAKVETNLS 301 (533)
Q Consensus 240 ~~~-----------~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl---e~e~----~ev~kLqeri~~lkt~Ls 301 (533)
... .++.-.+++..+...+++|...|..+-+|..++.++- -+.+ -++.+||++|+.-+.+-.
T Consensus 245 ~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~ 324 (1200)
T KOG0964|consen 245 DRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRN 324 (1200)
T ss_pred HHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhh
Confidence 221 2222335555566666666666666665544444331 1111 245667777776555444
Q ss_pred hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh--hHhhh
Q 037185 302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH--EAQER 379 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~--~~q~~ 379 (533)
..-|...+++..+.+-...+ +.+.-.-..|.++...+..+|.. ++.+.+-|.+-....+..- +.---
T Consensus 325 ~~l~~l~~~~~ki~e~~~EL----~~I~Pky~~l~~ee~~~~~rl~~-------l~~~~~~l~~Kqgr~sqFssk~eRDk 393 (1200)
T KOG0964|consen 325 LALHVLQKVKDKIEEKKDEL----SKIEPKYNSLVDEEKRLKKRLAK-------LEQKQRDLLAKQGRYSQFSSKEERDK 393 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHhhccccccCcHHHHHH
Confidence 44444444444444333221 12223334555556666666665 5555555555332222110 11122
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELI 459 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~ 459 (533)
.+..+|+.|+.-+.+.......+.+++++++..+.-.-+++-.++.-| ++=..+|.+.+.....+.-+--++.
T Consensus 394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si-------~e~~~r~~~~~~~~~~~k~~~del~ 466 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSI-------NETKGRMEEFDAENTELKRELDELQ 466 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 466677777776666666666666666666655544444443333333 2222233333333333434444455
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHhhhhHhhh-hhH
Q 037185 460 AASESSRKLVDELRFRVKELENEVDRQRMVILDAAE----EKREAIRQLCFSLEHYR-SGY 515 (533)
Q Consensus 460 ~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aE----eKREAIRQLCfslehyr-~~y 515 (533)
...-.++.-=..|+.....++..|.++...+-...- -=--+||++| ++|| +||
T Consensus 467 ~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~---e~~k~ngv 524 (1200)
T KOG0964|consen 467 DKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIK---EELKPNGV 524 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHH---HHhccccc
Confidence 555667777778888888899998887765543322 1234677776 7777 554
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.42 E-value=0.0028 Score=63.32 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=54.1
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-------hhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-------DRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-------~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
.....++.++.++..++..++.|++.+......++.-|..++..+. +++.+|.-|+..+.-....|--|...|
T Consensus 68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 68 KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4445667777777888888888888888888888888888887777 566666666666665555555555555
Q ss_pred hHHH
Q 037185 329 QSEM 332 (533)
Q Consensus 329 ~aEi 332 (533)
.+.|
T Consensus 148 ~~~~ 151 (312)
T PF00038_consen 148 REQI 151 (312)
T ss_dssp STT-
T ss_pred hhcc
Confidence 5555
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.40 E-value=0.00038 Score=68.36 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=74.4
Q ss_pred HHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 037185 172 GRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERL 251 (533)
Q Consensus 172 ~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei 251 (533)
+||..++++|-.+..++...+.++. -...++.-.+.++..|++++.-|+.. +
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~------------------~~~~~~~~aE~e~~~l~rri~~lE~~----------l 52 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLK------------------EAEKRAEKAEAEVASLQRRIQLLEEE----------L 52 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHCC----------C
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 4677788888777777777666532 23345556688999999888888844 3
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhh
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKF 321 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~ 321 (533)
-+..+.+...+..|..+.+......+.+ -.|..|.......+..++..++..+....++..|+
T Consensus 53 e~~eerL~~~~~kL~~~e~~~de~er~~-------k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~ 115 (237)
T PF00261_consen 53 ERAEERLEEATEKLEEAEKRADESERAR-------KVLENREQSDEERIEELEQQLKEAKRRAEEAERKY 115 (237)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667776666554444443 34555666666666666666677666666666664
No 28
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.40 E-value=0.0017 Score=64.89 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhh
Q 037185 304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQS 383 (533)
Q Consensus 304 d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~g 383 (533)
..+|++|+..+.+ ++.||+.+..++..|..+...+..++...-..+..++.++..+..+.-+... .+..|+.
T Consensus 53 e~el~~lr~~id~----~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~----~r~~le~ 124 (312)
T PF00038_consen 53 EEELRELRRQIDD----LSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL----ARVDLEN 124 (312)
T ss_dssp HHHHHCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred hhHHHHhHHhhhh----HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hHhHHHH
Confidence 3445555544443 3456777777777777777777777777666777777776666655555443 4455555
Q ss_pred HHHHHHHHHhhhh----hHH--------------------HHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHhh---
Q 037185 384 EINQLKVEVCERD----NRI--------------------EALNKIMDSLKLKYDMLMA-EKDEINAKVNTLMAEAR--- 435 (533)
Q Consensus 384 Eie~Lk~El~~~~----~~I--------------------e~LNk~id~Lk~k~e~L~~-EK~~l~~kv~~L~ad~~--- 435 (533)
.|..|++++.-.. .+| ..|...|.+++..|+.+.. =+..+.+|...=+.+++
T Consensus 125 ~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~ 204 (312)
T PF00038_consen 125 QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQS 204 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccc
Confidence 5555555442211 122 2234445555555553332 12233333333333332
Q ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhh
Q 037185 436 -SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSG 514 (533)
Q Consensus 436 -sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~ 514 (533)
.-...+...-.-+..++.....|-+..+.+......|..++.+|+.....++...-..-..+..-|++|..-+.++-.-
T Consensus 205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 3333344445555556666666666666677777777777777777777777776666777778899999999999999
Q ss_pred HHHHHH
Q 037185 515 YQELRQ 520 (533)
Q Consensus 515 y~~L~~ 520 (533)
|+.|..
T Consensus 285 y~~Ll~ 290 (312)
T PF00038_consen 285 YQELLD 290 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=0.0019 Score=75.06 Aligned_cols=298 Identities=18% Similarity=0.247 Sum_probs=151.9
Q ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHh------hhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037185 171 LGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQ------IESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSES 244 (533)
Q Consensus 171 ~~RiielEdELreaneKL~~sEEe~~rlk~el~k~------~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l 244 (533)
.+.+.+.+.+|+...--|...|.++.-++.+-++| +.+..+++...+.+++.. +...++ .++..-++.+
T Consensus 676 l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~---~~~~~~~e~v 750 (1174)
T KOG0933|consen 676 LQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN--EFHKLL---DDLKELLEEV 750 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHH---HHHHHHHHHH
Confidence 45566677777777777777777777665444443 346666666555555443 122222 2222222223
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhH---Hhhh
Q 037185 245 NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDA---EEKF 321 (533)
Q Consensus 245 ~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDA---eeK~ 321 (533)
.-+..+|......++++++......+.+.-|++-=+ +++. ++..+|+.+++.+... -+|.
T Consensus 751 ~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re---~rlk--------------dl~keik~~k~~~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 751 EESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE---RRLK--------------DLEKEIKTAKQRAEESSKELEKR 813 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH---hHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355555566666666666666555554443221 2222 3333344444333222 2344
Q ss_pred chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHH
Q 037185 322 TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEA 401 (533)
Q Consensus 322 s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~ 401 (533)
-.|.-.|..|+-.|..++.+.+..|...+.+|..++.++-.+++.-... .+.-..+.+++.+-.+.+-.
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~-----------~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV-----------EKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HhHHHHHHHHHHHHHHHHHh
Confidence 4555677777888888888888888886666666666666665533322 22233333333333334444
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhh-----------------Hh
Q 037185 402 LNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAAS-----------------ES 464 (533)
Q Consensus 402 LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~-----------------~~ 464 (533)
.+..|..+-.+.+-..+|+.....++..|--+++.-...-+.+...+.-|.-+|.-|-++- -.
T Consensus 883 ~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~ 962 (1174)
T KOG0933|consen 883 IDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHE 962 (1174)
T ss_pred hhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhH
Confidence 4444444444444444444333333333333333222222223333333333333222111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 037185 465 SRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAI 501 (533)
Q Consensus 465 ~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAI 501 (533)
++..+..|..+.+.|++-|..+....+|.+|+|--|+
T Consensus 963 are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~l 999 (1174)
T KOG0933|consen 963 AREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAAL 999 (1174)
T ss_pred HHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777777777765444
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=0.002 Score=75.80 Aligned_cols=223 Identities=15% Similarity=0.170 Sum_probs=112.0
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~ 336 (533)
+++.|..+++.+...+..+++-.++-..++.++|..|..|.- ....+...+.+...++-.+-..+.+++-++.
T Consensus 413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~-------~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~e 485 (1293)
T KOG0996|consen 413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE-------LLEKEERELDEILDSLKQETEGIREEIEKLE 485 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 344444444444443333333343333444444444433333 2233333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
++...+..++-+...+.+..+.++.-+..-...... +-.+|++.+...++.+.+....|..+-..|.++|.++...
T Consensus 486 kel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~----~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~ 561 (1293)
T KOG0996|consen 486 KELMPLLKQVNEARSELDVAESELDILLSRHETGLK----KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK 561 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444444444444444444444444444332222221 3446677777777777777777777666666666666666
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 037185 417 MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV------- 489 (533)
Q Consensus 417 ~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~------- 489 (533)
..+...+.....+|......+..++ ++++...+.-+.+-+-|..-...+...
T Consensus 562 ~k~l~~~~~e~~~~~~~~~~~rqrv---------------------eE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~G 620 (1293)
T KOG0996|consen 562 EKELPKLRKEERNLKSQLNKLRQRV---------------------EEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYG 620 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccc
Confidence 6666555555555554444444444 555555555556655555555444333
Q ss_pred ---HhhhhhHHH-HHHHHHhhhhHhh
Q 037185 490 ---ILDAAEEKR-EAIRQLCFSLEHY 511 (533)
Q Consensus 490 ---i~e~aEeKR-EAIRQLCfslehy 511 (533)
=+.+-..|- =||+-.|=.|||.
T Consensus 621 RLGDLg~Id~kYDvAIsTac~~Ldyi 646 (1293)
T KOG0996|consen 621 RLGDLGAIDEKYDVAISTACARLDYI 646 (1293)
T ss_pred ccccccccchHHHHHHHHhccccceE
Confidence 112223444 3888888888774
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.32 E-value=0.0018 Score=78.89 Aligned_cols=298 Identities=19% Similarity=0.227 Sum_probs=160.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 037185 168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFE 247 (533)
Q Consensus 168 ~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s 247 (533)
..+-++|.+|+++|+.++.||+--..++-.+-.++...+..+..=+....-++...-..+-.++.-...|++.+
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~------ 874 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKL------ 874 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 35668899999999999999766555555554444433322211111111111111222222221112222111
Q ss_pred HHHHHHHHHhhhhhHHHHHhhh-----hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc
Q 037185 248 IERLMKELEGTHQLQGQLKLAQ-----DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT 322 (533)
Q Consensus 248 ~~ei~kl~E~ik~LQ~~Le~~q-----~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s 322 (533)
..|..+|+....+...+. .|++.+-.. +.+..+-|..++.+|.+...+|+.++..+.-+++-+-
T Consensus 875 ----~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~-------Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~ 943 (1822)
T KOG4674|consen 875 ----SELEKRLKSAKTQLLNLDSKSSNEDATILEDT-------LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLE 943 (1822)
T ss_pred ----HHHHHHHHHhHHHHhhccccchhhhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111133333333333222 233333333 4455566677777777888888888888887777666
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
..|+.+.-=-..+-..+.++..++.+++.+...|++++-.+..+++=...-.+.+.-.+.++|..+..++-...+.++..
T Consensus 944 ~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~ 1023 (1822)
T KOG4674|consen 944 SVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQA 1023 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66665443333333334444444444444444477777777666655555556677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--------------HHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH----HHHHHhhHh
Q 037185 403 NKIMDSLKLKYDML--------------MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH----AELIAASES 464 (533)
Q Consensus 403 Nk~id~Lk~k~e~L--------------~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~----~~l~~~~~~ 464 (533)
|..+..++..+... +-+-+.+-.++..|.+++..=......+..-.-++|..- .........
T Consensus 1024 ~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~ 1103 (1822)
T KOG4674|consen 1024 NEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDA 1103 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHH
Confidence 99998887754422 223333344444444444444444444433333333211 122333444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037185 465 SRKLVDELRFRVKELENE 482 (533)
Q Consensus 465 ~~~~v~eL~~rv~eLE~E 482 (533)
+...|+.+..++..|+.+
T Consensus 1104 Leqe~~~~~~~~~~L~~q 1121 (1822)
T KOG4674|consen 1104 LEQEVNELKKRIESLEKQ 1121 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555666666555
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.32 E-value=0.0021 Score=68.60 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAAS 462 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~ 462 (533)
.|..+++.+...+..++.+..+...+.++|..|-.........++++..+|..+..+.+++-.+.
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555555556666777777777777776666654444
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.29 E-value=0.013 Score=65.05 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 221 EMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 221 e~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
...+.+...|+.+++++......+. .|...|.....++...+..+..++.++..+.
T Consensus 181 ~~~~ee~e~L~~~~kel~~~~e~l~---~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 181 EQEEEEMEQLKQQQKELTESSEELK---EERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455544444444333222 3333344445555555555555555555555
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.29 E-value=0.0025 Score=75.49 Aligned_cols=271 Identities=18% Similarity=0.278 Sum_probs=147.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEI 248 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~ 248 (533)
+|-+++..+++.|..++.+....|+.....+..+.. +.+.+.-..-.++..+..+..|+.....++....... .
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~ 677 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEE----LKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK--E 677 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 677777777777777777776666665554433322 1111122222222223334444433333332211111 1
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
++.......+..+..++..+.++...|...+.....+.. .+.-+....-.+.++..|..+++.+..+..++.-++..+
T Consensus 678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~--~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELR--NELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677888888888888888888888766665433 244555555566888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHH---HHHHHHHhhhhhHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEI---NQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEi---e~Lk~El~~~~~~Ie~LNk~ 405 (533)
......=+....-=...+..+..+...++.+|+.++....+... |+..++..- ..+..+.-.....+..+.+.
T Consensus 756 e~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e----Y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 831 (1201)
T PF12128_consen 756 EQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE----YEDWLQEEWDKVDELREEKPELEEQLRDLEQE 831 (1201)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 77665433222111224445444555577777777776666655 666666652 23444444444445555545
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185 406 MDSLKLKYDMLMA----EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451 (533)
Q Consensus 406 id~Lk~k~e~L~~----EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL 451 (533)
+..++.++..+.. .+..++..+..+...+..-+..+..+...+..+
T Consensus 832 ~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 832 LQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444433222 233333333333333333344443333333333
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.28 E-value=0.012 Score=64.31 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHh
Q 037185 340 ALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAE 419 (533)
Q Consensus 340 ~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~E 419 (533)
..|+.+|..+...+..|..++.....-++....-.......++..+..++.|+.+-...|....-++..|+...+.|..|
T Consensus 238 k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~E 317 (522)
T PF05701_consen 238 KDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSE 317 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666665333321000112233444555666666666666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-
Q 037185 420 KDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKR- 498 (533)
Q Consensus 420 K~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKR- 498 (533)
...++..+..|......=...|..++..|+.++.+..-..+.-..+...++.|...+..+-.|.+.=+......-++-+
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~ 397 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK 397 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666666777777777777776665555555555556666666666666665555544444433332
Q ss_pred --HHHHHHhhhhHhhhhhHH
Q 037185 499 --EAIRQLCFSLEHYRSGYQ 516 (533)
Q Consensus 499 --EAIRQLCfslehyr~~y~ 516 (533)
.-|.|.++.|.--=.+|+
T Consensus 398 ~k~E~e~~ka~i~t~E~rL~ 417 (522)
T PF05701_consen 398 AKEEAEQTKAAIKTAEERLE 417 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 334555555544444333
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.25 E-value=0.0065 Score=67.24 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhch
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL 300 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~L 300 (533)
+.++..|+.+|..|+.. |.-..++...|....+++....+.+..+...+..+...-...+.+|.+.|..|..+.
T Consensus 163 e~e~~~l~~~v~~l~~e---L~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAE---LEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555433 233335566666677777777777777666666666555555555555555555544
No 37
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.23 E-value=0.021 Score=65.19 Aligned_cols=103 Identities=24% Similarity=0.265 Sum_probs=61.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHH---HHHHhhh----------hhhhhhhhhHHhHHHH----HHHHHHH
Q 037185 168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKS---ELHSQIE----------SAKRDVNIKEADLEME----RRQVFEL 230 (533)
Q Consensus 168 ~~L~~RiielEdELreaneKL~~sEEe~~rlk~---el~k~~~----------~a~~dl~i~k~kLe~e----e~ei~~L 230 (533)
..|..||.+++.||+.++-.+.....++.||.. ++.+... -..++++.++..|-.. +.+.-.|
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENisl 109 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISL 109 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 368899999999999999999999999999952 2222211 1222233333333222 6677777
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhh
Q 037185 231 QNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 231 Q~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
|++|--|.+.--.+.-=-=||.++.|.+.-|..+|+.+-.
T Consensus 110 QKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 110 QKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665543211111113455666666666666655443
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.19 E-value=0.0024 Score=74.61 Aligned_cols=236 Identities=21% Similarity=0.299 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhhhHHHHHhhHHHHHHhhh--hhhhhhhhhHHhHHHH-----HHHHHHHHHHHHHHHHhhhcchHHHHH
Q 037185 178 EDKLRVLNLSLQLSEEEVARLKSELHSQIE--SAKRDVNIKEADLEME-----RRQVFELQNYVRELETRLSESNFEIER 250 (533)
Q Consensus 178 EdELreaneKL~~sEEe~~rlk~el~k~~~--~a~~dl~i~k~kLe~e-----e~ei~~LQ~~v~ELE~~~~~l~~s~~e 250 (533)
.+-|..+++-|...++++..++..+..... -...+++..+..++.- =..|+...+++..++ ++
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~----------~~ 289 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQE----------EE 289 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Confidence 344566677777777777766544443221 1122233333333332 233444444444444 67
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS 330 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~a 330 (533)
|.+.++....||..++..+-.+.+++.++ ...++-|..++......+.||..+++.+-++-.
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~-------teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r----------- 351 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKL-------TEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR----------- 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-----------
Confidence 88888888888888888888777777766 233445556666666777777777777765433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH-hhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEK-MEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK-~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
++..+.+++.+-+...++.-.....++-+|-.++++- -++ ..+.-++...++.|+.++...+..|..|+..+..+
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~----~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL----GSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333344444444444432 111 12444556667777777777776777776666666
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
+.++..--.|++.+..++. +=-.+|.++-.||+-|.
T Consensus 428 ~~~~~~~~ee~~~i~~~i~-------~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 428 KEKAKEEEEEKEHIEGEIL-------QLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 6666666666666655553 33455666666666553
No 39
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.17 E-value=0.0037 Score=69.63 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=44.4
Q ss_pred HHhhhhhhhhhhHHHHHH----HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185 432 AEARSRDNHIGQIEEHSR----KLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA 494 (533)
Q Consensus 432 ad~~sRd~~I~qme~hl~----qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a 494 (533)
++.++-|+.++.||.-|- +|.-+-|.|=.....+.-.+.++..++.+|+-.+.-|+.+|...+
T Consensus 365 e~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE 431 (629)
T KOG0963|consen 365 EEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLE 431 (629)
T ss_pred ccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 345566666777777664 466677777666666666778888888888888888887776543
No 40
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.12 E-value=0.0019 Score=63.16 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 037185 402 LNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELEN 481 (533)
Q Consensus 402 LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~ 481 (533)
+.-.++-++.++..|..++..|...|...-.-+.-||--+.+-..|+..|-.-. +.-+....+||+.++.||+
T Consensus 114 l~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~i-------eEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 114 LLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTI-------EEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344556667777888889999999998888888899999988899998887666 4445567899999999998
Q ss_pred HH
Q 037185 482 EV 483 (533)
Q Consensus 482 Ev 483 (533)
.+
T Consensus 187 ql 188 (193)
T PF14662_consen 187 QL 188 (193)
T ss_pred HH
Confidence 76
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.12 E-value=0.012 Score=64.66 Aligned_cols=172 Identities=16% Similarity=0.231 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR 303 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~ 303 (533)
..+|..|+.++.+......+|+ ++..++.++..++.|+.+-..|++|+.--......+..+...|...
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~------------l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~ 322 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELD------------LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHA 322 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5566666655555444433333 2233333444444455555566666633333334444444555555
Q ss_pred hHHHHHHHHHHhhHHhhhchh------HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHh
Q 037185 304 NNEVAELKIALSDAEEKFTLD------KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQ 377 (533)
Q Consensus 304 d~EIr~LK~~lsDAeeK~s~E------Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q 377 (533)
......|...+....+.+.+- -.++..++..|......+...+..-......+++++..+.....++.. .
T Consensus 323 ~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~----e 398 (569)
T PRK04778 323 KEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK----E 398 (569)
T ss_pred HHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH----H
Confidence 555666666666666665531 223344444444444444444443222333333444443333333332 3
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185 378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKL 411 (533)
Q Consensus 378 ~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~ 411 (533)
+.+++..+..|..+-.+-...|..+...+..++.
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444444455555555544443
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.07 E-value=0.0033 Score=67.12 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 442 GQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 442 ~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
..++..+..|.-...++......+...+.++.....+++++..
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433444444444444444444455544443
No 43
>PRK11637 AmiB activator; Provisional
Probab=98.06 E-value=0.0039 Score=65.74 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037185 412 KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELI 459 (533)
Q Consensus 412 k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~ 459 (533)
+...|...+......+..|.++...+...+.+++....+|.-...++.
T Consensus 206 ~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 206 QQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555555555555555555555555544444443
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.02 E-value=0.01 Score=68.78 Aligned_cols=45 Identities=31% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcch
Q 037185 201 ELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESN 245 (533)
Q Consensus 201 el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~ 245 (533)
++...+..+.=|-++.+++-+..+.++..|+-+|.+|+..++=|+
T Consensus 308 d~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 308 DTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344466666778888888889999999999999888776655
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.97 E-value=0.014 Score=68.62 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~ 405 (533)
+.++..|.+.+..+..+..+|++ +|+++.++-.+-- ....||+.++..+........++.-.
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~te-------iea~i~~~~~e~~-----------~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTE-------IEAKIGELKDEVD-----------AQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555677777777777777777 5555544433221 12223333333333333333333322
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEA-RSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~-~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
+.+-...+.-+..+.+.++-.|.++.+++ .+=..++.++++.+. .+.+.|..+...+..|..+.+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~--------------~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLE--------------QLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333333333333333333 222223333333333 334444455555555555555
Q ss_pred HHHHHHhhhhhHH---HHHHHHHhhhhHhhh
Q 037185 485 RQRMVILDAAEEK---REAIRQLCFSLEHYR 512 (533)
Q Consensus 485 ~Q~~~i~e~aEeK---REAIRQLCfslehyr 512 (533)
.=+..+.+..|+| ..-|+||-=+|..+-
T Consensus 426 ~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 426 EVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666 244666666665554
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.92 E-value=0.092 Score=61.25 Aligned_cols=126 Identities=25% Similarity=0.341 Sum_probs=78.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHH----HHHHHHHHHHHhhhcc
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVF----ELQNYVRELETRLSES 244 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~----~LQ~~v~ELE~~~~~l 244 (533)
+|..-+.+|.++|..++.|- .|++ ++++ +|.+ ++|.-+-++..+.+|. .||+++.+-++.....
T Consensus 228 eLr~QvrdLtEkLetlR~kR--~EDk-~Kl~-Elek--------mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~kea 295 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKR--AEDK-AKLK-ELEK--------MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEA 295 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhhH-HHHH-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666665544332 2222 2221 1111 2344444455544443 4555554444443333
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 245 NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 245 ~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
..-.++. ...+-++++-+|++.-|.-+...|.++--.+|.-|+||+-.|.++|+.+-.|+..
T Consensus 296 qe~ke~~---k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 296 QEAKERY---KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222222 2456788888999999999999999999999999999999999999888777765
No 47
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.90 E-value=0.031 Score=57.91 Aligned_cols=182 Identities=27% Similarity=0.338 Sum_probs=114.1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHH---HHHHH
Q 037185 269 QDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQA---LLDAR 345 (533)
Q Consensus 269 q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~---~Le~k 345 (533)
.+++..|.++-+.--.+|.++-+.+.-+.........+|..||..-.+...+... |-.++.+|.+... ....-
T Consensus 33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e----L~~~~~~l~e~~~~~~~~~~~ 108 (294)
T COG1340 33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE----LRKEYRELKEKRNEFNLGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhccCCC
Confidence 3445555555444445556666778888888888999999999888877666544 6666666666665 22333
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 037185 346 LKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINA 425 (533)
Q Consensus 346 L~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~ 425 (533)
+.. ++..|+.++. +.++.-|--.-+..+...|..|..++.... .+...|-.+..|..+++.+..+-+.+.+
T Consensus 109 ~~~-------ler~i~~Le~-~~~T~~L~~e~E~~lvq~I~~L~k~le~~~-k~~e~~~~~~el~aei~~lk~~~~e~~e 179 (294)
T COG1340 109 IKS-------LEREIERLEK-KQQTSVLTPEEERELVQKIKELRKELEDAK-KALEENEKLKELKAEIDELKKKAREIHE 179 (294)
T ss_pred HHH-------HHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 7777777766 333333455567788888998888884444 4445566677777777777777766666
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185 426 KVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK 477 (533)
Q Consensus 426 kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~ 477 (533)
+|..|--++ ...|-+..++...++.+++-.++++..+.
T Consensus 180 ki~~la~ea--------------qe~he~m~k~~~~~De~Rkeade~he~~v 217 (294)
T COG1340 180 KIQELANEA--------------QEYHEEMIKLFEEADELRKEADELHEEFV 217 (294)
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555444 44444445555555444444444444433
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.86 E-value=0.073 Score=58.35 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELI 459 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~ 459 (533)
.|+..++.|+.|+..-...|..+.+........+..|..|...+..++..+.+........+..|-.-|+|+.-+.
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea---- 381 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA---- 381 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH----
Confidence 3444455555555444444455444444444445555555555555555555555555566666777777765444
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 460 AASESSRKLVDELRFRVKELENEVDRQRMVI 490 (533)
Q Consensus 460 ~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i 490 (533)
+.+++.....+..+..+-.+++..+..|
T Consensus 382 ---e~Ak~ea~~~~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 382 ---EEAKKEAEEAKEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444443
No 49
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.85 E-value=0.1 Score=59.56 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHcCCCCCCc
Q 037185 465 SRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAV 530 (533)
Q Consensus 465 ~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~GhKR~~V 530 (533)
|+..-+.|--+|.+|-.-..+.--...-+.--=|+-||+|---|..--.+++.|-+-+..-+||++
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLl 643 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLL 643 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Confidence 333333444444444433333334444455556889999999999999999999999888888863
No 50
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.80 E-value=0.064 Score=55.81 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=108.8
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----h---hhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----D---RNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----~---~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
.++-+..++|..+.-+-+++++||+.|+.--..|..-|.-|..-|+ + +..-=++|+-++--+...++.=+..|
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm 135 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM 135 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh
Confidence 5678889999999999999999999999655556666665555554 2 22333778888888888888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKV 390 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~ 390 (533)
..+||.|.+.+..|-.+|...+...+.|+.++......-.|-..+++.-+++|...--++|+
T Consensus 136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE 197 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKE 197 (305)
T ss_pred cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888777677666666655555444
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.78 E-value=0.097 Score=58.95 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=67.8
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLE 337 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E 337 (533)
-..||++++.+++++..|..++...++...-|-.-+...+..|..++-.++.++....|. .+++-.=.+=++-|++...
T Consensus 82 E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~-~kLLe~lqsdk~t~SRAls 160 (617)
T PF15070_consen 82 EQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDR-QKLLEQLQSDKATASRALS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccchHHHHHHH
Confidence 345666666666666677777766665444443333344444555555555555544442 2222222233445888889
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 338 KQALLDARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 338 ~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
-|..|..+|.+ +++.+-++..+||+...
T Consensus 161 QN~eLK~QL~E-------lq~~Fv~ltne~~elt~ 188 (617)
T PF15070_consen 161 QNRELKEQLAE-------LQDAFVKLTNENMELTS 188 (617)
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHhhhHhhH
Confidence 99999999999 99999999999998865
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.77 E-value=0.19 Score=60.14 Aligned_cols=128 Identities=22% Similarity=0.277 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHHHH
Q 037185 218 ADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIAKV 296 (533)
Q Consensus 218 ~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~~l 296 (533)
++++..+.++..++..+.+++..+... ...+..+...+...+.+++.+..++..|++.....+.+ -..+.+|...+
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQI---NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444666666666666666554332 23444444555555555555555555555554444433 33345555666
Q ss_pred hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHH-HHHHHHHHHHHHHHHH
Q 037185 297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEM-FCLLEKQALLDARLKE 348 (533)
Q Consensus 297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEi-skL~E~~~~Le~kL~e 348 (533)
.+.+..++.++..+++.+....+.+--.+..+..+. ....+..+.++.++..
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~ 736 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQ 736 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655555444443333222 2333333444444443
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.76 E-value=0.11 Score=63.69 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 037185 476 VKELENEVDRQRMVILDAAEEKREA 500 (533)
Q Consensus 476 v~eLE~Eve~Q~~~i~e~aEeKREA 500 (533)
+.+|+...+.|...+.+..++++++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEA 577 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 54
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.75 E-value=5.9e-06 Score=94.34 Aligned_cols=239 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHH
Q 037185 216 KEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIA 294 (533)
Q Consensus 216 ~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~ 294 (533)
.+..|+.+-.....|+.++..|+.....|+...+ ...+....++.+|..++.+++.|++||+.+... +..|.+-=+
T Consensus 248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqle---eE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKK 324 (859)
T PF01576_consen 248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQLE---EEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKK 324 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344444444555555666666655555543322 233577889999999999999999999998766 555655555
Q ss_pred HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh
Q 037185 295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH 374 (533)
Q Consensus 295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~ 374 (533)
.|...|.+.+..+..++..++..... |..|.+|+..| ...|...-..+..++-+.+.+.....+...
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~----k~rL~~EleDl-------~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~-- 391 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKT----KKRLQGELEDL-------TSELEKAQAAAAELEKKQRKFDKQLAEWKA-- 391 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Confidence 66666666666666666655533222 22344444333 333333333444466666665554444432
Q ss_pred hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185 375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME 454 (533)
Q Consensus 375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e 454 (533)
.-..++.+...+..+.......|-.|...++.+...++.+..++..|.+.|..|..-...=...|..|+.-..+|..+
T Consensus 392 --~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e 469 (859)
T PF01576_consen 392 --KVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQE 469 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHH
Confidence 222444555555555555555666666666666666666666666666666655544444455566666666666666
Q ss_pred HHHHHHhhHhHHHHHHHH
Q 037185 455 HAELIAASESSRKLVDEL 472 (533)
Q Consensus 455 ~~~l~~~~~~~~~~v~eL 472 (533)
..++-...+.+-..+...
T Consensus 470 ~~El~~~leE~E~~l~~~ 487 (859)
T PF01576_consen 470 KEELQEQLEEAEDALEAE 487 (859)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555544444444333333
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.74 E-value=0.2 Score=59.90 Aligned_cols=185 Identities=21% Similarity=0.215 Sum_probs=86.2
Q ss_pred hhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHH-----------
Q 037185 205 QIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT----------- 273 (533)
Q Consensus 205 ~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a----------- 273 (533)
..+++...++...+++..++.+...|.++|.+++..+..+.--...+.--.++...++.+|+.+-.+..
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~ 567 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRK 567 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhh
Confidence 445666667777777777777777777777666644333321111111112233333333332222211
Q ss_pred ---HHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHH---HHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185 274 ---TLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELK---IALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 274 ---~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK---~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~ 347 (533)
-+...+..+..++.++++++..+++....+..+-+.+. .+...-.--+.-+...++++|+.|.+.+..+...+.
T Consensus 568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~ 647 (1317)
T KOG0612|consen 568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELL 647 (1317)
T ss_pred hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHH
Confidence 11122333334556677777766665443333332222 222222223444555555555555555555555555
Q ss_pred HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185 348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE 391 (533)
Q Consensus 348 e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E 391 (533)
..+.-.+...+.+-+.+.+ .+..-|+.....++++.+++..|
T Consensus 648 k~~el~r~~~e~~~~~ek~--~~e~~~e~~lk~~q~~~eq~~~E 689 (1317)
T KOG0612|consen 648 KVEELKRENQERISDSEKE--ALEIKLERKLKMLQNELEQENAE 689 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443333333333333332 23333445555556666655544
No 56
>PRK11637 AmiB activator; Provisional
Probab=97.74 E-value=0.044 Score=58.00 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 423 INAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 423 l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
+......|.+....|...+.+++..+....-+.
T Consensus 203 ~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l 235 (428)
T PRK11637 203 QQAQQQKLEQARNERKKTLTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555544444444433333
No 57
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.70 E-value=8.2e-06 Score=93.20 Aligned_cols=196 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHhhHHhhhchhHhhhhHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHH
Q 037185 310 LKIALSDAEEKFTLDKAQLQSEMFC----LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEI 385 (533)
Q Consensus 310 LK~~lsDAeeK~s~EKa~l~aEisk----L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEi 385 (533)
|...++.+..-+..-|..+..++.. |-+....|..+|.+ ++..+....+....++. ....|++++
T Consensus 290 l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~e-------l~e~le~~~~~~~~LeK----~k~rL~~El 358 (859)
T PF01576_consen 290 LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQE-------LQEQLEEANAKVSSLEK----TKKRLQGEL 358 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3333333333333334444444333 44445556666666 33333333333333332 445677888
Q ss_pred HHHHHHHhhhhhHHHHHH-------HHHHHHHHHHH-------HhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185 386 NQLKVEVCERDNRIEALN-------KIMDSLKLKYD-------MLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451 (533)
Q Consensus 386 e~Lk~El~~~~~~Ie~LN-------k~id~Lk~k~e-------~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL 451 (533)
+-+..++..-...+..|. +.++.++.+++ .+..|...+..+|..|......=...+..+++.-..|
T Consensus 359 eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L 438 (859)
T PF01576_consen 359 EDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQL 438 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 877777766655544444 44455555554 4455666677777777777777778888888888999
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHhhhhHhhhhhHH
Q 037185 452 HMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKRE---AIRQLCFSLEHYRSGYQ 516 (533)
Q Consensus 452 ~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKRE---AIRQLCfslehyr~~y~ 516 (533)
+.+...|+...+.+.+.|.+|......||.+++.++..+-+....-.. ++.-|=..|..+|.-|+
T Consensus 439 ~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e 506 (859)
T PF01576_consen 439 QDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE 506 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887665432221 23334445555555553
No 58
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.16 Score=59.83 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=124.0
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH---HHhhHHhhhchhHhhhhHHHHH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI---ALSDAEEKFTLDKAQLQSEMFC 334 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~---~lsDAeeK~s~EKa~l~aEisk 334 (533)
+++.-++|+.+..+..+.-.+=+.-..++-+-++.+..+++++..+.+.++-|+. .+..-+.++.-.|..|.-+|..
T Consensus 232 l~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kd 311 (1200)
T KOG0964|consen 232 LNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKD 311 (1200)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3344444444444444433333333445555666666677766666666665544 3333345677777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhh-------------------
Q 037185 335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCER------------------- 395 (533)
Q Consensus 335 L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~------------------- 395 (533)
|++.++.=...=..-....+-++++|-+-..|-.+..- ....|..+...++..|...
T Consensus 312 lq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~P----ky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFss 387 (1200)
T KOG0964|consen 312 LQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEP----KYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSS 387 (1200)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCc
Confidence 77777654332221112222245555444444443332 2334444444444444332
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHH
Q 037185 396 --------DNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK 467 (533)
Q Consensus 396 --------~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~ 467 (533)
..+|..++..|.+.+...+-|..|...++.. ...++++|+.++.-++......-++-+..-+...
T Consensus 388 k~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~-------l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~ 460 (1200)
T KOG0964|consen 388 KEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE-------LKEKLEEIKELESSINETKGRMEEFDAENTELKR 460 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH
Confidence 2367777777777777666666666555444 4788888888888888776666566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037185 468 LVDELRFRVKELENEVDRQRMVI 490 (533)
Q Consensus 468 ~v~eL~~rv~eLE~Eve~Q~~~i 490 (533)
-.++|-.+-++|=.|=.+-+..|
T Consensus 461 ~~del~~~Rk~lWREE~~l~~~i 483 (1200)
T KOG0964|consen 461 ELDELQDKRKELWREEKKLRSLI 483 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666644433333333
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.63 E-value=0.023 Score=55.79 Aligned_cols=97 Identities=24% Similarity=0.288 Sum_probs=66.9
Q ss_pred hhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHH
Q 037185 320 KFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRI 399 (533)
Q Consensus 320 K~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~I 399 (533)
..--|.-+|-++|..|++++..|-+.... +-.++.+|.++++.+.. |-..-..-|.+-...+.++..+|
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~-------lk~~~~eL~~~~~~Lq~----Ql~~~e~l~~~~da~l~e~t~~i 160 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDG-------LKKRSKELATEKATLQR----QLCEFESLICQRDAILSERTQQI 160 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhh-------HHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHhhH
Confidence 33446677888888888888888887777 88888888887775554 33333444455555566667777
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 400 EALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 400 e~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
+.|.+-|+..++=...|+.||+.+...+
T Consensus 161 ~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 161 EELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666777777776666654
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.19 Score=58.09 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=70.6
Q ss_pred HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhh----------hhHH
Q 037185 262 QGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQ----------LQSE 331 (533)
Q Consensus 262 Q~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~----------l~aE 331 (533)
|.+|+--+.-+..+.++-+.|...+..|-++.+.+.-.|+.++..+..|...|+|..-++.--|.- +.+|
T Consensus 408 qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ise 487 (1118)
T KOG1029|consen 408 QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISE 487 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHH
Confidence 444555555566677777888888888999999999999999999999999999988776654433 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 332 MFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
|..|+-.+..+..+|-.+--+.+.+.+++++...
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 5555544444555554444455556666665555
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.61 E-value=0.14 Score=58.49 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 338 KQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 338 ~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
--.++..+.+++|.+++-|..+++..++.++
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~ 569 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIR 569 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555544444444444444444333
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.57 E-value=0.076 Score=64.95 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhH
Q 037185 246 FEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDK 325 (533)
Q Consensus 246 ~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EK 325 (533)
-....+.++...+.++..++..+++++..++..++... +...++..+..+...+..+...+......+..+.+++
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeel---- 378 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQ---- 378 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33344444445555555555555555555554443322 3334455555555555555555555555554443332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
..+..++..+.++...|..++.++......++.++.+++..+.
T Consensus 379 eeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 379 EENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444444444444444444445555555444443
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.53 E-value=0.22 Score=55.58 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=75.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEI 248 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~ 248 (533)
.|+-|++-| =+|.+-+|.+|.+|-.++.-....+++|..=-+.. .+.++..+.+-|.+--.....+.
T Consensus 46 ~LNDRLA~Y-------IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~---ye~El~~ar~~l~e~~~~ra~~e--- 112 (546)
T KOG0977|consen 46 ELNDRLAVY-------IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAK---YEAELATARKLLDETARERAKLE--- 112 (546)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH---hhhhHHHHHHHHHHHHHHHHHHH---
Confidence 555555554 46677889999998766665544444442211111 12233333222222211111111
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
-+|.++.+.++++...++.+++.++..+.++.-...-...|+.-+..++.....++.+++.||...+--..-+-.=|.++
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33555556666666666666555555555543333333333333333333333444444444444443333333444445
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e 348 (533)
..|+.-=.+-+.....-|++
T Consensus 193 d~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 193 DDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 55553333333333333333
No 64
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.52 E-value=0.041 Score=63.68 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=60.8
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHH
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSE 331 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aE 331 (533)
.-.++.+++..++|...+.+........+.-.+...-.+.|+..+|...+.+.++=.+|.+...|...+.+..--.
T Consensus 385 ~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s---- 460 (980)
T KOG0980|consen 385 REEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQS---- 460 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3334455555555555555444444444444555666777777888888888888888888888877765443322
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037185 332 MFCLLEKQALLDARLKEW 349 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e~ 349 (533)
|-++.++++.|..+|+++
T Consensus 461 ~~~~~~~~~~L~d~le~~ 478 (980)
T KOG0980|consen 461 IDDVEEENTNLNDQLEEL 478 (980)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 237788888888888873
No 65
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.50 E-value=0.28 Score=55.12 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh-----hHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH-----EAQERGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~-----~~q~~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
...+..+...++..+..++++....++.-++.+++|.++-..+..-. ----.+..+-|-+-++||..--.++-.|
T Consensus 438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~l 517 (594)
T PF05667_consen 438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTREL 517 (594)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777778888888887666655421 1112366777777888887777788888
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 037185 403 NKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENE 482 (533)
Q Consensus 403 Nk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~E 482 (533)
++.|-.+.-+++--=+..|++ +-.|+. +|+..++.=.+|..||-.-..||...+...... +.+.+||..
T Consensus 518 QkeiN~l~gkL~RtF~v~dEl------ifrdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~----rEirdLe~q 586 (594)
T PF05667_consen 518 QKEINSLTGKLDRTFTVTDEL------IFRDAK-KDEAARKAYKLLASLHENCSQLIETVEETGTIS----REIRDLEEQ 586 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHH------HHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHH
Confidence 888888777765332222221 233333 899999999999999977777777766654433 444566665
Q ss_pred HH
Q 037185 483 VD 484 (533)
Q Consensus 483 ve 484 (533)
++
T Consensus 587 I~ 588 (594)
T PF05667_consen 587 ID 588 (594)
T ss_pred HH
Confidence 54
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.46 E-value=0.39 Score=57.64 Aligned_cols=101 Identities=24% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHH--HHHHHHHHHHHHHhhhhhHHHH
Q 037185 282 ERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLE--KQALLDARLKEWELQGKALEDK 359 (533)
Q Consensus 282 e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E--~~~~Le~kL~e~e~~~~~lEde 359 (533)
.++.-..+-+.++.++...+.++..+..++..+--+++ +|..+..-++.+-. ..++++-+++. ++++
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e----l~r~~~e~~~~~ek~~~e~~~e~~lk~-------~q~~ 682 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE----LKRENQERISDSEKEALEIKLERKLKM-------LQNE 682 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 33333333344444444444444444443333333332 33333333444333 33444444444 4555
Q ss_pred HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhh
Q 037185 360 IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCER 395 (533)
Q Consensus 360 irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~ 395 (533)
..|..+|.-.. + +.+++..++.-+..|+++..-+
T Consensus 683 ~eq~~~E~~~~-~-L~~~e~~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 683 LEQENAEHHRL-R-LQDKEAQMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHHHHHHHHHH-H-HhhHHHHHHHHHHHhcccccHH
Confidence 55555444443 1 1223444444444555554443
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.45 E-value=0.31 Score=54.42 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 439 NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 439 ~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
+.|+.+...+..+.-+..++.+..+.....+..++.++..+++++.+.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777777777777766544
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.36 E-value=0.091 Score=59.91 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=75.3
Q ss_pred HHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037185 414 DMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDA 493 (533)
Q Consensus 414 e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~ 493 (533)
+.+..-+..++.++..|-.|+..+++.+..|+.++.+|+...-+--..++.+...+.-|+.+..-||+-.--...+=+|.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldL 620 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDL 620 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555666777888888888999999999999999999876433334678888888899999999998653333322232
Q ss_pred hhHHHHHHHHHhhhhHhhhhhHHHHHH
Q 037185 494 AEEKREAIRQLCFSLEHYRSGYQELRQ 520 (533)
Q Consensus 494 aEeKREAIRQLCfslehyr~~y~~L~~ 520 (533)
=--=-+|=|||=..-.+.|..=+++..
T Consensus 621 fsaLg~akrq~ei~~~~~~~~d~ei~~ 647 (697)
T PF09726_consen 621 FSALGDAKRQLEIAQGQLRKKDKEIEE 647 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222335566777777777777666543
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.35 E-value=0.023 Score=57.39 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=68.2
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS 330 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~a 330 (533)
+.++.-.++.-+..|+.++.+...++..+ ..++.++..++++.+..+.+|+++...+.+++.++.--|. .-
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~-------~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~~ 89 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKAL-------EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--ER 89 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HH
Confidence 44444555566666666666555555444 6777788888888899999999999999999999844333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
+...|.-+...+..+... +++++..+..+..
T Consensus 90 e~~aL~~E~~~ak~r~~~-------le~el~~l~~~~~ 120 (239)
T COG1579 90 ELRALNIEIQIAKERINS-------LEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 555565555555555555 6666666666444
No 70
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.34 E-value=0.36 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhh
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLS 191 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~s 191 (533)
.|..++.+++.|++..+..|+.+
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777666666665
No 71
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.29 E-value=5.7e-05 Score=84.38 Aligned_cols=218 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHh---hchhhhhHHHHHHHHHHhhHHhhhchhHh--hhhHHHHHHHHHHHHHHH
Q 037185 270 DDVTTLNAKLDYERMQVLKFQERIAKVE---TNLSDRNNEVAELKIALSDAEEKFTLDKA--QLQSEMFCLLEKQALLDA 344 (533)
Q Consensus 270 ~e~a~~k~Kle~e~~ev~kLqeri~~lk---t~Ls~~d~EIr~LK~~lsDAeeK~s~EKa--~l~aEiskL~E~~~~Le~ 344 (533)
.++..++..++.-..++.....+|..|. ..+.+.+..|..|+..+.+.+.-..+-|. .--+.|..|..++..+..
T Consensus 192 ~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~ 271 (722)
T PF05557_consen 192 SELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLRE 271 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444442 23445677777777666655443211111 112345556666666655
Q ss_pred HHH---HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHhHH
Q 037185 345 RLK---EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL---NKIMDSLKLKYDMLMA 418 (533)
Q Consensus 345 kL~---e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L---Nk~id~Lk~k~e~L~~ 418 (533)
.++ ..-..+.+|+++.+-++..-.-++. ...+-..|+-+...|..++..-..-+... +..-+++...+..|..
T Consensus 272 Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~-~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~ 350 (722)
T PF05557_consen 272 ELKHLRQSQENVELLEEEKRSLQRKLERLEE-LEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQ 350 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 544 2222333444444444432222221 22244456666666666665444433332 2334456667778888
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRM 488 (533)
Q Consensus 419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~ 488 (533)
+...+-+++.++.++++.++..|..|+..+.++.-+..++-+......+.+.+|..++.=+-+||+-=|.
T Consensus 351 ~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~ 420 (722)
T PF05557_consen 351 ENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRA 420 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999998888888777777777777777776666666655543
No 72
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.28 E-value=0.52 Score=53.29 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhh-hHHHHhhhhHHHHHH-HHHHHHHHHHH
Q 037185 219 DLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQD-DVTTLNAKLDYERMQ-VLKFQERIAKV 296 (533)
Q Consensus 219 kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~-e~a~~k~Kle~e~~e-v~kLqeri~~l 296 (533)
+++.-..++..|+.++.+++.....++--...+.++.+.+..+...++..-+ .|.....++..+-.+ -..|+++-.++
T Consensus 115 k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~ 194 (629)
T KOG0963|consen 115 KQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNL 194 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333567788888888888777666665556666676776666665554433 344444555544444 45678888888
Q ss_pred hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhh
Q 037185 297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ-------SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKME 369 (533)
Q Consensus 297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~-------aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E 369 (533)
..+++.+++-|+.|..++-|..-+.|.=++... +||+=+.-+..--..++..++.+|..+..++......+.-
T Consensus 195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~ 274 (629)
T KOG0963|consen 195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL 274 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 888888888888888888877777776666644 4444444444444445555555555555555444432211
Q ss_pred hhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 037185 370 ITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSR 449 (533)
Q Consensus 370 ~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~ 449 (533)
+-...|.++..-++.++..|..|+.+|.+++. .+..|.....+.|+.|-..+++.+..|.+|.+.|+
T Consensus 275 ----------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~---S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 275 ----------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEA---SLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred ----------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11244666677777788888888888888764 44556666677777777777888888888887776
Q ss_pred H
Q 037185 450 K 450 (533)
Q Consensus 450 q 450 (533)
-
T Consensus 342 ~ 342 (629)
T KOG0963|consen 342 S 342 (629)
T ss_pred h
Confidence 4
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.28 E-value=0.053 Score=55.86 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
+..+.|+.+-.||.=-..- +..|+..|.+...-+--+...|.+.+..+.+....+..+... |+.++..+
T Consensus 128 K~~aRl~aK~~WYeWR~~l----l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~-------L~~e~~~L 196 (325)
T PF08317_consen 128 KTYARLEAKKMWYEWRMQL----LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAE-------LEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3345555566666543222 344455555555554555556666666666666666666666 77778777
Q ss_pred HHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 364 ETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 364 eaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.+-..+++..-......++.++..++.++..+++.+..++..+..++.+++.+..+|..+.+.|
T Consensus 197 k~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 197 KQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766653333333444444444444444444444444444444444444444444444444
No 74
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.26 E-value=0.34 Score=50.78 Aligned_cols=90 Identities=26% Similarity=0.307 Sum_probs=54.3
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhhHHHH-HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKLDYER-MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~-~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL 335 (533)
.++.|+..|..++.+-+.+.++|+.+. ..|.+|+-.|..|.+. +..++.++..|
T Consensus 107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e-------------------------~~~~q~~le~L 161 (310)
T PF09755_consen 107 LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE-------------------------KSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------------HHHhHHHHHHH
Confidence 478888888888888888888888766 5577777777666442 22334444455
Q ss_pred HHHHHHHHHHHH-HHHhhhhhHHHHHHHhHHHHhhhh
Q 037185 336 LEKQALLDARLK-EWELQGKALEDKIRQCETEKMEIT 371 (533)
Q Consensus 336 ~E~~~~Le~kL~-e~e~~~~~lEdeirqleaEK~E~~ 371 (533)
..+...|+..|+ +-|.=++-|--++-+++++|.-++
T Consensus 162 r~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq 198 (310)
T PF09755_consen 162 RREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555 223333444444555555555443
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.24 E-value=0.34 Score=52.63 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=37.6
Q ss_pred HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
.+|+..+.+++..++++.....+-.+|+..|+.+++.+...+++|.+....+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45566666677777777777777788888888888877777777776555444
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.24 E-value=0.0031 Score=70.84 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhh
Q 037185 464 SSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYR 512 (533)
Q Consensus 464 ~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr 512 (533)
...+.+.+|+.+|..+++...|-+.+-.. |-.-+|..||+|=-|+
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~----ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKA----KSQEFREAVYSLLGYK 647 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcce
Confidence 34556788999999999988888887755 4455777788876554
No 77
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.15 E-value=0.7 Score=52.32 Aligned_cols=65 Identities=17% Similarity=0.336 Sum_probs=37.5
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----------------hhhHHHHHHHHHHhhHHhh
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----------------DRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----------------~~d~EIr~LK~~lsDAeeK 320 (533)
....+|.........+.+++..-+..+..|.+|...|..|+.++. .+..+++.|+..+.+...+
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555666777777777666555 4556666676666655554
Q ss_pred h
Q 037185 321 F 321 (533)
Q Consensus 321 ~ 321 (533)
+
T Consensus 103 l 103 (617)
T PF15070_consen 103 L 103 (617)
T ss_pred H
Confidence 3
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.15 E-value=0.85 Score=53.22 Aligned_cols=82 Identities=27% Similarity=0.258 Sum_probs=56.2
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHH
Q 037185 211 RDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQ 290 (533)
Q Consensus 211 ~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLq 290 (533)
||...-++++-.-+.||..||+..-+|| .+..++|+.|.-+|.+|..+.-++...++++..+..+.+---
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE----------~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLE----------MEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA 161 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 3444555666666888888887777777 557888999999999999888888888888776665544333
Q ss_pred HHHHHHhhchhh
Q 037185 291 ERIAKVETNLSD 302 (533)
Q Consensus 291 eri~~lkt~Ls~ 302 (533)
.-|-+.-..|-+
T Consensus 162 ~eIf~~~~~L~n 173 (1265)
T KOG0976|consen 162 HDIFMIGEDLHD 173 (1265)
T ss_pred HHHHHHHHHHhh
Confidence 333333333333
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.10 E-value=0.68 Score=51.25 Aligned_cols=195 Identities=19% Similarity=0.265 Sum_probs=97.0
Q ss_pred HHHHHHHHhhH-HhhhchhHhhhhHHHHHHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhh
Q 037185 307 VAELKIALSDA-EEKFTLDKAQLQSEMFCLLEKQALLDA-----RLKEWELQGKALEDKIRQCETEKMEITGLHEAQERG 380 (533)
Q Consensus 307 Ir~LK~~lsDA-eeK~s~EKa~l~aEiskL~E~~~~Le~-----kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~ 380 (533)
+.+|+.-..+. .+.|.++.-.+..+|..|.+....... .|+..+.....++++|-+++. .
T Consensus 232 l~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd--------------~ 297 (569)
T PRK04778 232 LQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD--------------I 297 (569)
T ss_pred HHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH--------------H
Confidence 34444444333 356777777888888888888877444 445666666777777777776 2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH---HHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV---NTLMAEARSRDNHIGQIEEHSRKLHMEHAE 457 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv---~~L~ad~~sRd~~I~qme~hl~qL~~e~~~ 457 (533)
|..|+..- ..-.+.+..+-+.+.+++.....|..|.+.|+..- ++-+..++.-..+|..++..+..+.-....
T Consensus 298 lekE~~A~----~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~ 373 (569)
T PRK04778 298 LEREVKAR----KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAE 373 (569)
T ss_pred HHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222211 11222333344444444444444444444444330 111122233334444444444433333333
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHc
Q 037185 458 LIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL 523 (533)
Q Consensus 458 l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~ 523 (533)
.......+...+.++..++.+++++...-...|......-.+|. --|++||.-...+.+.+.
T Consensus 374 ~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr----~kL~~~~~~L~~ikr~l~ 435 (569)
T PRK04778 374 QEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAR----EKLERYRNKLHEIKRYLE 435 (569)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33334555555566666666666665555555554443333333 335666665555555554
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.05 E-value=0.31 Score=52.96 Aligned_cols=165 Identities=20% Similarity=0.236 Sum_probs=90.9
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH----HHHHHhhHHh---------hhc
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE----LKIALSDAEE---------KFT 322 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~----LK~~lsDAee---------K~s 322 (533)
.....|+.+|..+..++++....+-.-.....++...|+.+..+|..+..+-++ |-..|..+.. ..+
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~ 138 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVS 138 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcC
Confidence 344444445555555555554444333333444444444444444433332222 2222332332 456
Q ss_pred hhHhhhhHHHHH--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh
Q 037185 323 LDKAQLQSEMFC--------LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE 394 (533)
Q Consensus 323 ~EKa~l~aEisk--------L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~ 394 (533)
+|-+.-..-+.. +.+.+.+|..-++. |-+.-..+.+++.+... ..-+...+...|.--+.+
T Consensus 139 ~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~-------l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E 207 (420)
T COG4942 139 PEDAQRSVRLAIYYGALNPARAERIDALKATLKQ-------LAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEE 207 (420)
T ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 666553333333 34444555555555 55555555555555443 334455566666666678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 395 RDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 395 ~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
+.+-...||+++.....+++.|....+.|...|.++-
T Consensus 208 ~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 208 RKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888899999998889888888888888876554
No 81
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.49 Score=54.99 Aligned_cols=94 Identities=23% Similarity=0.275 Sum_probs=80.4
Q ss_pred hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185 375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME 454 (533)
Q Consensus 375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e 454 (533)
.++.+.++.++.++++++...-..|++.+..++.+..-...++.|+..++-++.+|...+..=+|-|+.+-+.+.-|.+.
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999999999998888887777633
Q ss_pred HHHHHHhhHhHHHHHHHHH
Q 037185 455 HAELIAASESSRKLVDELR 473 (533)
Q Consensus 455 ~~~l~~~~~~~~~~v~eL~ 473 (533)
+.++++.+.|.+-+
T Consensus 885 -----adse~l~ka~~~~k 898 (970)
T KOG0946|consen 885 -----ADSETLSKALKTVK 898 (970)
T ss_pred -----hcchHHHHHHHHhh
Confidence 34555566655544
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.00 E-value=0.9 Score=50.91 Aligned_cols=161 Identities=17% Similarity=0.247 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHH----HhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 037185 164 NETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELH----SQIESAKRDVNIKEADLEMERRQVFELQNYVRELET 239 (533)
Q Consensus 164 ~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~----k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~ 239 (533)
|.-...--.||--||.+=+..---|..++....+-...+. ..++.|.+.+.-+.....-.+.+|..|+-.+++|..
T Consensus 48 NDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 48 NDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344455667777777776666666666555443322222 222244444444434444446666666655555554
Q ss_pred hhhcc----hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-------hhhHHHH
Q 037185 240 RLSES----NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-------DRNNEVA 308 (533)
Q Consensus 240 ~~~~l----~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-------~~d~EIr 308 (533)
..... .--.+.+.-....+.++++++..+.-.+..+.-.+.--++|+..|...|+.++.+|. ++++.+.
T Consensus 128 ~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q 207 (546)
T KOG0977|consen 128 KLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQ 207 (546)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 32111 111122222233455555555555554444444444455788888888888888776 7888888
Q ss_pred HHHHHHhhHHhhhchh
Q 037185 309 ELKIALSDAEEKFTLD 324 (533)
Q Consensus 309 ~LK~~lsDAeeK~s~E 324 (533)
.|.+.|.-...-|..|
T Consensus 208 ~Lleel~f~~~~h~~e 223 (546)
T KOG0977|consen 208 TLLEELAFLKRIHKQE 223 (546)
T ss_pred HHHHHHHHHHhccHHH
Confidence 8888888766555443
No 83
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.95 E-value=1.6 Score=53.06 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh
Q 037185 419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVIL-----DA 493 (533)
Q Consensus 419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~-----e~ 493 (533)
++-.+.+++.-+-.+...=|.+|.+++ .....-+++.|-...+.+..--..+....++++..|.+=+..+. +.
T Consensus 1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~ 1086 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDA 1086 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccH
Confidence 333444444444444444455555444 22223444555555555555666777888899999988888877 55
Q ss_pred hhHHHHHHHHH---hhhhHhhhhhHHHHHHHHc
Q 037185 494 AEEKREAIRQL---CFSLEHYRSGYQELRQAFL 523 (533)
Q Consensus 494 aEeKREAIRQL---Cfslehyr~~y~~L~~~~~ 523 (533)
++.=|.|+=++ -|+.+|.---|+-|.+++.
T Consensus 1087 ~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim 1119 (1294)
T KOG0962|consen 1087 EKNYRKALIELKTTELSNKDLDKYYKALDKAIM 1119 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665332 3333333333445555543
No 84
>PF13514 AAA_27: AAA domain
Probab=96.93 E-value=1.5 Score=52.23 Aligned_cols=40 Identities=35% Similarity=0.361 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhhhH---HHHHHHHHhhhhHhhhhhHH
Q 037185 477 KELENEVDRQRMVILDAAEE---KREAIRQLCFSLEHYRSGYQ 516 (533)
Q Consensus 477 ~eLE~Eve~Q~~~i~e~aEe---KREAIRQLCfslehyr~~y~ 516 (533)
.++..+.+..+..|.+.+++ -+-|..=|.-+++.||..|+
T Consensus 936 a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~ 978 (1111)
T PF13514_consen 936 AELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQ 978 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555544443 44566677888999999885
No 85
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.93 E-value=0.46 Score=46.48 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.4
Q ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 171 LGRVIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 171 ~~RiielEdELreaneKL~~sEEe~~rlk 199 (533)
..+|.+|..+|.++..+|+.+.-+|--|+
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999888887775
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.43 Score=55.35 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 037185 386 NQLKVEVCERDNRIEALNKIMDSLKLKYDM 415 (533)
Q Consensus 386 e~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~ 415 (533)
..|..|...+-.+|..+|-.+..||..+..
T Consensus 552 delskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 552 DELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333444445566777777777777665543
No 87
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.90 E-value=0.13 Score=48.35 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHh
Q 037185 340 ALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAE 419 (533)
Q Consensus 340 ~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~E 419 (533)
-+...+|++...+.-++++.+.-++++..-.+. ....+.-+.+--+.++...+..|+.|...+..|...++.+++|
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~----~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQE----NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666665443332 3333444445555555555666666666777777777777777
Q ss_pred HHHHHHHH
Q 037185 420 KDEINAKV 427 (533)
Q Consensus 420 K~~l~~kv 427 (533)
|..|...+
T Consensus 82 k~~L~k~l 89 (140)
T PF10473_consen 82 KENLDKEL 89 (140)
T ss_pred HHHHHHHH
Confidence 76665554
No 88
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.89 E-value=0.93 Score=49.66 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185 280 DYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDK 359 (533)
Q Consensus 280 e~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEde 359 (533)
.+.+.|++-|+-|.-+|+.++-+ .+.+. ++- ..|-...+-||....+..++|+... ++..
T Consensus 246 SrlkqEnlqLvhR~h~LEEq~re--qElra--------eE~-l~Ee~rrhrEil~k~eReasle~En---------lqmr 305 (502)
T KOG0982|consen 246 SRLKQENLQLVHRYHMLEEQRRE--QELRA--------EES-LSEEERRHREILIKKEREASLEKEN---------LQMR 305 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--hhhhH--------HHH-HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 44567788888888887765432 22222 111 2345567788888888777776443 5567
Q ss_pred HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 360 IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 360 irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
++|++.++- +|...|-+||.-.+.....-..+..-|+.++..+-..+..+-..+..+
T Consensus 306 ~qqleeent-----------elRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 306 DQQLEEENT-----------ELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777555 466677777776666666666666667777777766666654444443
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.87 E-value=0.52 Score=46.13 Aligned_cols=169 Identities=23% Similarity=0.319 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHH---hhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIAL---SDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCE 364 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~l---sDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqle 364 (533)
.|+..|+.+.-.+.++.+|.+-|++.- ..|-.+|----+.|.-=|....+++-.|..+|+.....++.++.+++...
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443322 23445555555555556667777777777788776666677777777666
Q ss_pred HHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 037185 365 TEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQI 444 (533)
Q Consensus 365 aEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qm 444 (533)
++.-. ++.++..|+. |-..- .| .|.+.+..+|+.+-+.+-.-|.+|+.|
T Consensus 96 ~el~k-----------~~~~l~~L~~------------------L~~dk-nL-~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 96 EELLK-----------TKDELKHLKK------------------LSEDK-NL-AEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHH-----------HHHHHHHHHH------------------HHHcC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62221 1111111111 00000 11 134556666666666778888899888
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 445 EEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVI 490 (533)
Q Consensus 445 e~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i 490 (533)
+.++.-.. -........-.+.+.++...+..|..||..-+..|
T Consensus 145 ek~leL~~---k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 145 EKQLELEN---KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88654432 22222333334555666666666666666554444
No 90
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.86 E-value=0.00026 Score=79.23 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH------------HHHhhHhHHHHHH
Q 037185 404 KIMDSLKLKYDMLMAEKDEI-NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAE------------LIAASESSRKLVD 470 (533)
Q Consensus 404 k~id~Lk~k~e~L~~EK~~l-~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~------------l~~~~~~~~~~v~ 470 (533)
..+..++..++.+..+...- ..+|..|-..+..++..|.+|+..+... ++.|+ -+++...+++.+.
T Consensus 554 ~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~-lekak~vi~~Ld~k~~~~~~e~~~L~~ql~ 632 (713)
T PF05622_consen 554 DELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKY-LEKAKEVIKTLDPKQNPSSPEIQALKKQLQ 632 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH-HHHHHHHhhccChhccCChHHHHHHHHHHH
Confidence 33333344455544444433 7788888888889998888888644321 22221 3456667788888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037185 471 ELRFRVKELENEVDRQR 487 (533)
Q Consensus 471 eL~~rv~eLE~Eve~Q~ 487 (533)
+-..++..||.+.+.-+
T Consensus 633 e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 633 EKDRRIESLEKELEKSK 649 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 88899999998885443
No 91
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.86 E-value=1.4 Score=50.86 Aligned_cols=184 Identities=21% Similarity=0.174 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh---hhhhhhh----------hhHHhHHHHHHHHHHHHH-
Q 037185 167 YEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE---SAKRDVN----------IKEADLEMERRQVFELQN- 232 (533)
Q Consensus 167 ~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~---~a~~dl~----------i~k~kLe~ee~ei~~LQ~- 232 (533)
.++++|||..+|-..+.+----+++--++..+|.+|.-.++ +|-.|-- .-|.-|.. ...|.+|.+
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q-s~iIkKLRAk 482 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ-SAIIKKLRAK 482 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 46899999999988866554455555555555555443332 2222210 11111111 122222221
Q ss_pred -------------HHHHHHHhhh----cchHHHHHHHH-HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 037185 233 -------------YVRELETRLS----ESNFEIERLMK-ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIA 294 (533)
Q Consensus 233 -------------~v~ELE~~~~----~l~~s~~ei~k-l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~ 294 (533)
+|..|+-... .|+.. +++.| ++|.|+.++++++...++.+-.+...+.--....-+|.+..
T Consensus 483 ~ke~etl~~K~ge~i~~L~sE~~~lk~il~~K-ee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d 561 (961)
T KOG4673|consen 483 IKEAETLEEKKGELITKLQSEENKLKSILRDK-EETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATND 561 (961)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 2222222222 22222 34444 45678888888877777666555554443334444444444
Q ss_pred HHhhchh---------------hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185 295 KVETNLS---------------DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDK 359 (533)
Q Consensus 295 ~lkt~Ls---------------~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEde 359 (533)
-++.+|. .+=-.|.+|+++|+-+++..-.=-. -+-+++..|..+|..-|.+|..+-.+
T Consensus 562 ~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd-------~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 562 EARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED-------MFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred hhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444331 2222345555555555544322222 24455566666666666666555443
No 92
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.85 E-value=1.7 Score=51.79 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=49.7
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Q 037185 416 LMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA- 494 (533)
Q Consensus 416 L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a- 494 (533)
+..+-..+.+.|.+|..-+..|+-.+..+..-.+.|--++-..........+...+|...+.-||+|..---..|.-.-
T Consensus 479 ~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 479 LEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555544444444444444444455555666666666666666432222222222
Q ss_pred -hHHHHHHHHHhhhhHhhhhh
Q 037185 495 -EEKREAIRQLCFSLEHYRSG 514 (533)
Q Consensus 495 -EeKREAIRQLCfslehyr~~ 514 (533)
.+|+.+.-|--=.+|-|-.-
T Consensus 559 t~qn~~~LEq~~n~lE~~~~e 579 (1195)
T KOG4643|consen 559 TSQNGALLEQNNNDLELIHNE 579 (1195)
T ss_pred HhHHHHHHHHhhhHHHHHHHH
Confidence 35666555555555544433
No 93
>PRK09039 hypothetical protein; Validated
Probab=96.82 E-value=0.084 Score=55.20 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=33.4
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
+..+..+|..++..|+.+=.-|.-+......|+.+|+.+.++++....+-..|+..+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444445555666666677777777777777765555555555443
No 94
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=1.6 Score=50.20 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHHHHH---HHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhH------HHHHHHHHHHHHHHHHhhHh
Q 037185 394 ERDNRIEALNKIMDSLKLK---YDMLMAEKDEINAKVNTLMAEARSRDNHIGQI------EEHSRKLHMEHAELIAASES 464 (533)
Q Consensus 394 ~~~~~Ie~LNk~id~Lk~k---~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qm------e~hl~qL~~e~~~l~~~~~~ 464 (533)
++..-+..|.-.+..|..+ ++.|.+=+-.+.-....|++..++|..-+..| +.|.+++.-+...- .+
T Consensus 272 e~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~----~~ 347 (716)
T KOG4593|consen 272 ENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRN----AN 347 (716)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHH----hh
Confidence 3333444444444444443 44555556666777778888888888777665 45555555444221 12
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185 465 SRKLVD------ELRFRVKELENEVDRQRMVILDAAEEKRE 499 (533)
Q Consensus 465 ~~~~v~------eL~~rv~eLE~Eve~Q~~~i~e~aEeKRE 499 (533)
++..++ .+..++..+=+++.++=..|.+.+--+|+
T Consensus 348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~ 388 (716)
T KOG4593|consen 348 LKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKE 388 (716)
T ss_pred hccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 222222 23466777777788877777777766653
No 95
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.74 E-value=0.15 Score=53.08 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=65.5
Q ss_pred HHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHH
Q 037185 307 VAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEIN 386 (533)
Q Consensus 307 Ir~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie 386 (533)
+..|+..|-..-+-+--++..|...+..+.+-.-.|..+... |..++.++..-+.+++..-......++.++.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~-------L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~ 214 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDA-------LEEELRQLKQLEDELEDCDPTELDRAKEKLK 214 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444445556666666666666677777766 7777777777666655433333344555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.+..++....+.|+.++..+..++.+++.....|..+...|
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555554
No 96
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.70 E-value=2.2 Score=50.94 Aligned_cols=125 Identities=19% Similarity=0.168 Sum_probs=72.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHH
Q 037185 388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK 467 (533)
Q Consensus 388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~ 467 (533)
|+.+....+..|..+-|....+.....+|+.|++.+-..+.|.-. .-+|. ...-+|+.|+-.-+-.+.+..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~-s~~rq---~~e~e~~~q~ls~~~Q~~~et----- 483 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR-SLSRQ---SLENEELDQLLSLQDQLEAET----- 483 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHH---HHHhHHHHHHHHHHHHHHHHH-----
Confidence 344444555566666666666666777899999888888866532 22333 344556666554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhh---hhhHHHHHHHHc
Q 037185 468 LVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHY---RSGYQELRQAFL 523 (533)
Q Consensus 468 ~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehy---r~~y~~L~~~~~ 523 (533)
.+|+.+++.|=+-...-...++-.+..|-+--+|+==-..|| -+.+..|++.+.
T Consensus 484 --~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~ 540 (1195)
T KOG4643|consen 484 --EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLG 540 (1195)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555666666666655555553333333 455666665553
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.70 E-value=0.16 Score=47.29 Aligned_cols=94 Identities=19% Similarity=0.303 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHH---HHHHHHHHHHHHhhch
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERM---QVLKFQERIAKVETNL 300 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~---ev~kLqeri~~lkt~L 300 (533)
...+..+..++++|++....+. .+|..|+.++..|..+|+.++..+...+.+++.--. .+--|+.||..|+..|
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E---~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKE---QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence 4455556666777776654443 677888888888888888888888888888754432 2334666666666666
Q ss_pred hhhhHHHHHHHHHHhhHHhh
Q 037185 301 SDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 301 s~~d~EIr~LK~~lsDAeeK 320 (533)
...+..++..-..|-++..+
T Consensus 90 e~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 90 EEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555544433
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.69 E-value=0.16 Score=51.38 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=51.6
Q ss_pred HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHH
Q 037185 263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342 (533)
Q Consensus 263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~L 342 (533)
.++..++.++.+|+.+.++-..+++.|.+++..+...+.++...+..++..+.++...+..+=+-+.-++-.+..+.++|
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666677676666677777777777777776666666666666666666665554444444444444444444
Q ss_pred HHHH
Q 037185 343 DARL 346 (533)
Q Consensus 343 e~kL 346 (533)
-++|
T Consensus 169 ~~~l 172 (239)
T COG1579 169 KEKL 172 (239)
T ss_pred HHhc
Confidence 4443
No 99
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=2.3 Score=50.84 Aligned_cols=240 Identities=19% Similarity=0.239 Sum_probs=147.9
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh--hhchhHhhhh
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE--KFTLDKAQLQ 329 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee--K~s~EKa~l~ 329 (533)
......|..+-.+|...+.++..+..+.+..-+++.....-+..+-.++...|..|++....|++--+ +|-.+-+.++
T Consensus 223 fhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k 302 (1141)
T KOG0018|consen 223 FHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLK 302 (1141)
T ss_pred hhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccch
Confidence 34445666666777777777777777777777777777666666666788888888888888877111 2223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhh------------hhhhHHHHHHHHHhhh-h
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQER------------GMQSEINQLKVEVCER-D 396 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~------------~L~gEie~Lk~El~~~-~ 396 (533)
+.+....-.+...+...........-++.++.-++..+.+.+. +.+.+ ....+-++|+++-+.. .
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fek--ei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~ 380 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEK--EIEERSQERGSELNLKDDQVEEYERLKEEACKEAL 380 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhH
Confidence 4444444444444444444334444455555555544443332 11111 1112233444433221 4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRV 476 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv 476 (533)
..++.||.++-.-+..++.+.+=...+.+++..|...+..=+..+..|..++..+.-.+.++-..-+.+...|..++.+.
T Consensus 381 ~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~ 460 (1141)
T KOG0018|consen 381 EELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP 460 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence 45677777776666667766666777888888888888777777778888888888888788777777777788777777
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037185 477 KELENEVDRQRMVILDA 493 (533)
Q Consensus 477 ~eLE~Eve~Q~~~i~e~ 493 (533)
.++-.+...-+..|++.
T Consensus 461 ~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 461 YELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777766666666554
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.65 E-value=0.2 Score=47.04 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=90.5
Q ss_pred HHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 037185 349 WELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVN 428 (533)
Q Consensus 349 ~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~ 428 (533)
|+....-++++++....++. ..+.+|+.|-.++.........+ ....-
T Consensus 1 de~K~l~v~~kLK~~~~e~d-------------------------sle~~v~~LEreLe~~q~~~e~~-------~~daE 48 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKD-------------------------SLEDHVESLERELEMSQENKECL-------ILDAE 48 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHh-------------------------hHHHHHHHHHHHHHHHHHhHHHH-------HHHHH
Confidence 44444556677776666554 33446666554444444443333 33334
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Q 037185 429 TLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSL 508 (533)
Q Consensus 429 ~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfsl 508 (533)
|-.+.+.+-..+|..|-..+++|+++-+-+.++-+++.+.+.....||++||.-+.--...|.....+|+...--+-|++
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~v 128 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAV 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666778888899999999999999999999999999999999999988888888888777777665555555
Q ss_pred Hhh
Q 037185 509 EHY 511 (533)
Q Consensus 509 ehy 511 (533)
+-.
T Consensus 129 e~L 131 (140)
T PF10473_consen 129 EML 131 (140)
T ss_pred HHH
Confidence 543
No 101
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=1.9 Score=49.64 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=118.3
Q ss_pred HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 348 e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.+..+...|....+...+--.||.-...|++. +|..|.+|-.++.++...=-.|-.+-+....++..|+.|++.++..|
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed-~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i 512 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFED-MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI 512 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555 88888999999988877666666677777888999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--
Q 037185 428 NTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLC-- 505 (533)
Q Consensus 428 ~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLC-- 505 (533)
.+|.+-++.=--.|+.+++.++-|.-....++.+.......++.++..+-++.+.++--+.. ++..+.+-+=|...|
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~-~ek~~~~le~i~~~~~e 591 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIE-LEKSEAKLEQIQEQYAE 591 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888777777777777777777666544333 233444444444433
Q ss_pred --hhhHhhhhhH
Q 037185 506 --FSLEHYRSGY 515 (533)
Q Consensus 506 --fslehyr~~y 515 (533)
-.|++.+-..
T Consensus 592 ~~~ele~~~~k~ 603 (698)
T KOG0978|consen 592 LELELEIEKFKR 603 (698)
T ss_pred HHHHHHHHHHHH
Confidence 3445554443
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=1.8 Score=48.86 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=26.1
Q ss_pred hHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 261 LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
+-.+++..++....+..+++ ++-+.+.++.-++..-+.+++-|++++..|+
T Consensus 233 i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~ 283 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVS 283 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444555553 4444555555555555555555555555555
No 103
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.56 E-value=2.4 Score=49.72 Aligned_cols=95 Identities=17% Similarity=0.285 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH---HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185 418 AEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHM---EHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA 494 (533)
Q Consensus 418 ~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~---e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a 494 (533)
.=|.++...+.+|+.....|+++|..+-.|+-.|.+ -|-..--+...|..-++-|..-..-++...+-= .++-+.|
T Consensus 372 e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~f-k~Lke~a 450 (1265)
T KOG0976|consen 372 EKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNF-KVLKEHA 450 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH-HHHHHhh
Confidence 345566777778888888888888887777765542 231111122222233333444444444444332 2456788
Q ss_pred hHHHH-HHHHHhhhhHhhhh
Q 037185 495 EEKRE-AIRQLCFSLEHYRS 513 (533)
Q Consensus 495 EeKRE-AIRQLCfslehyr~ 513 (533)
|+||+ ||-|--=-++..|.
T Consensus 451 egsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 451 EGSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred hhhHhhHHHHHHHHHHHHHH
Confidence 88876 67664444444443
No 104
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.55 E-value=0.23 Score=45.16 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHH
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSE 331 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aE 331 (533)
......+..++..|+...+.+.....+.+.|+.--+..-..|..+++.+.....+|..|+.....|...+.--+.+...+
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q 99 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ 99 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34446677777777777787888888999888887778888999999999999999999998888877765555554444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037185 332 MFCLLEKQALLDARLKE 348 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e 348 (533)
=..|..++..+..++.+
T Consensus 100 k~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 100 KEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.47 E-value=2.1 Score=48.02 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHH----HHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYER----MQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~----~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
.++..+...+..++.+++.++..+..++.+|...- .+...|..+++.++..+..+.+.+++
T Consensus 223 ~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 223 EKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445666666666666666666666554432 22234555555555555555555554
No 106
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.41 E-value=2.8 Score=48.80 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
..++.++.+....+..++..|+.....+++.+..+
T Consensus 585 ~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555566666666666666555555555555555
No 107
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=2 Score=50.21 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhH---HHHhhhhHHHH-----------------HHHHHHHHHHHHHhhchhhhhHHH
Q 037185 248 IERLMKELEGTHQLQGQLKLAQDDV---TTLNAKLDYER-----------------MQVLKFQERIAKVETNLSDRNNEV 307 (533)
Q Consensus 248 ~~ei~kl~E~ik~LQ~~Le~~q~e~---a~~k~Kle~e~-----------------~ev~kLqeri~~lkt~Ls~~d~EI 307 (533)
.+++..+...++.|-+..+.++++. .+|...+.+.. .+|..|--..+..++.+.+.+.++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~ 815 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL 815 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3555555556666665555555544 33332222222 344444333566666777777777
Q ss_pred HHHHHHHhhHHhhhc---hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 308 AELKIALSDAEEKFT---LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 308 r~LK~~lsDAeeK~s---~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
..+|+.....-++++ ..+..+..-=.-+..+..+.+.+|-.+-.+.+..-+.++.+++
T Consensus 816 ~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltE 876 (970)
T KOG0946|consen 816 TQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTE 876 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 777777665555433 2222232223335555666666666654444445555544443
No 108
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.21 E-value=3 Score=47.17 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=20.8
Q ss_pred HHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHc
Q 037185 489 VILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL 523 (533)
Q Consensus 489 ~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~ 523 (533)
.|.--|- |=++.|+.-=.|--.+++|..|-+.+.
T Consensus 538 lifrdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~ 571 (594)
T PF05667_consen 538 LIFRDAK-KDEAARKAYKLLASLHENCSQLIETVE 571 (594)
T ss_pred HHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443343 555666655556677778887777665
No 109
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.14 E-value=1.5 Score=46.00 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK 477 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~ 477 (533)
++...|..|+.|...+..-+.|-..-...|..|++.+.+...+. .++-.|+.+|......++..-..|.+.+.
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~-------k~~~~EnEeL~q~L~~ske~Q~~L~aEL~ 279 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC-------KQLAAENEELQQHLQASKESQRQLQAELQ 279 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666677777777666554444 55666666666666666666666666666
Q ss_pred HHHHHH
Q 037185 478 ELENEV 483 (533)
Q Consensus 478 eLE~Ev 483 (533)
+|...-
T Consensus 280 elqdkY 285 (306)
T PF04849_consen 280 ELQDKY 285 (306)
T ss_pred HHHHHH
Confidence 665544
No 110
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.11 E-value=1.4 Score=46.41 Aligned_cols=178 Identities=22% Similarity=0.273 Sum_probs=103.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhh----------hhhhHHhH-HHHHHHHHHHHHHHHHH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRD----------VNIKEADL-EMERRQVFELQNYVREL 237 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~d----------l~i~k~kL-e~ee~ei~~LQ~~v~EL 237 (533)
.|..++..+|..|..+++.+.-+.-++. +|.+|-+....+..| ++-..... -..-..+..||..++.|
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~L 172 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSL 172 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHH
Confidence 6777778888888877777766655543 456665443211111 00000000 00012334455555555
Q ss_pred HHhhhcchHHHHHHHH--------HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 238 ETRLSESNFEIERLMK--------ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 238 E~~~~~l~~s~~ei~k--------l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
|..-..|+-....+.. .+--+.++=.+|-.|...|+.+-.=|.....+....|+-|+.|-+++.++++.++.
T Consensus 173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 173 EEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444433333221 12236666677777888788777777777777888888888888888887777766
Q ss_pred HHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 310 LKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 310 LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
+ ..|+..|..-+.-..+.+..|...|.+ +.++-..|.+
T Consensus 253 ~-----------~~EnEeL~q~L~~ske~Q~~L~aEL~e-------lqdkY~E~~~ 290 (306)
T PF04849_consen 253 L-----------AAENEELQQHLQASKESQRQLQAELQE-------LQDKYAECMA 290 (306)
T ss_pred H-----------hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3 445556666666666777777777777 5555555544
No 111
>PRK09039 hypothetical protein; Validated
Probab=96.10 E-value=0.41 Score=50.15 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAK 426 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k 426 (533)
|..+...++....+.-..|..||+.|+.|+..+..|..+.+.++..
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555566666666655554444444444333
No 112
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.05 E-value=1.8 Score=43.16 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIM 406 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~i 406 (533)
.+.+.+-.|.-....+..++..++...+.+-+++++.++ +++ -+ +..|..|.+.+
T Consensus 120 ~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~-rAE----------------------~a--ERsVakLeke~ 174 (205)
T KOG1003|consen 120 ILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET-RAE----------------------FA--ERRVAKLEKER 174 (205)
T ss_pred HhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-hHH----------------------HH--HHHHHHHcccH
Confidence 556667777777888888888988888889888888776 221 11 24677777777
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~ 435 (533)
|+|..++.....+--.+...++...++++
T Consensus 175 DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 175 DDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777776666655555555544444443
No 113
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=96.03 E-value=2.9 Score=45.30 Aligned_cols=105 Identities=17% Similarity=0.288 Sum_probs=65.4
Q ss_pred HHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 037185 174 VIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMK 253 (533)
Q Consensus 174 iielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~k 253 (533)
+..+-+||++.++....+++++.+||.+++.. +..-...|+.++-+...|-.||.++-
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e-------~~~~~~~LqEEr~R~erLEeqlNd~~--------------- 271 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQRE-------YQFILEALQEERYRYERLEEQLNDLT--------------- 271 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHH---------------
Confidence 44455688888899999999999998877654 34444455555544444543343333
Q ss_pred HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHH
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELK 311 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK 311 (533)
.--|+++.+++.+++....|.++.-. ||+..+...++.-+.+|.+|+
T Consensus 272 -----elHq~Ei~~LKqeLa~~EEK~~Yqs~------eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 272 -----ELHQNEIYNLKQELASMEEKMAYQSY------ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred -----HHHHHHHHHHHHHHHhHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHH
Confidence 22366777777777777778777664 344444444455555566655
No 114
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.03 E-value=0.58 Score=43.62 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
.+|..|+-++..++.+|...+..+.+++..+..+... .+..-.|...+..|+..|...+....-.-.+++++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~--------~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR--------KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444332 22222556666666666666433333355555544
Q ss_pred HH
Q 037185 364 ET 365 (533)
Q Consensus 364 ea 365 (533)
..
T Consensus 107 d~ 108 (143)
T PF12718_consen 107 DV 108 (143)
T ss_pred HH
Confidence 43
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.00 E-value=2.4 Score=43.97 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185 334 CLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY 413 (533)
Q Consensus 334 kL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~ 413 (533)
++.-..+.|++|-.=|+=+.+.++.=+. .|....+-|+.+.....+.++.++..+..+..++
T Consensus 125 ~~vK~~aRl~aK~~WYeWR~~ll~gl~~------------------~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~ 186 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWRMQLLEGLKE------------------GLEENLELLQEDYAKLDKQLEQLDELLPKLRERK 186 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566665544444444443333 3444455566666667777777877777777777
Q ss_pred HHhHHhHHHHHHHH
Q 037185 414 DMLMAEKDEINAKV 427 (533)
Q Consensus 414 e~L~~EK~~l~~kv 427 (533)
..|+.|...+.+.+
T Consensus 187 ~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 187 AELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666654
No 116
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.98 E-value=2 Score=47.44 Aligned_cols=188 Identities=15% Similarity=0.051 Sum_probs=98.0
Q ss_pred HhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh-------hhhhhhhhhHHhHHHHHHHHHHHHHHH-------------
Q 037185 175 IQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE-------SAKRDVNIKEADLEMERRQVFELQNYV------------- 234 (533)
Q Consensus 175 ielEdELreaneKL~~sEEe~~rlk~el~k~~~-------~a~~dl~i~k~kLe~ee~ei~~LQ~~v------------- 234 (533)
..+-++|+.|.+++.+..|...---....+... .-..-+.+.+-+|-.+.++|.++|.++
T Consensus 209 ~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~ 288 (554)
T KOG4677|consen 209 RSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELA 288 (554)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 556688888888888877765433211111111 111123445555555566666665333
Q ss_pred --------------------HHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 037185 235 --------------------RELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIA 294 (533)
Q Consensus 235 --------------------~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~ 294 (533)
+|+|..-..+.++.+++..++..+..|..++......+--+...+ ..+.-.+.++++
T Consensus 289 ~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~---~~q~~~~h~~ka 365 (554)
T KOG4677|consen 289 LSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAG---QTQIFRKHPRKA 365 (554)
T ss_pred HHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh---HHHHHHhhhHhh
Confidence 455555566666666666666665555555543332222222221 233344455555
Q ss_pred HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHhHH
Q 037185 295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK--EWELQGKALEDKIRQCET 365 (533)
Q Consensus 295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~--e~e~~~~~lEdeirqlea 365 (533)
-.++....+.-.+.-+++.-.--.+-..+-+.+.++-|..=..+.+.|-.+|+ -|......+++-.-||..
T Consensus 366 ~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~ 438 (554)
T KOG4677|consen 366 SILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTY 438 (554)
T ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHH
Confidence 55554455555555555555444455555556666666666666666666554 444444444444444444
No 117
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.97 E-value=4.6 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.2
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHhh
Q 037185 4 SSSRWLAENLEEMDRSVKQMQKLIE 28 (533)
Q Consensus 4 ~~skWl~~nL~~me~~vk~mlklie 28 (533)
+.+-+|..-|..||+-.|.+-..+.
T Consensus 258 ~~~~~l~~~l~~~eeEnk~Lke~l~ 282 (769)
T PF05911_consen 258 KESEFLTERLQAMEEENKMLKEALA 282 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999999999888777665
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.87 E-value=2.4 Score=44.85 Aligned_cols=196 Identities=20% Similarity=0.187 Sum_probs=122.6
Q ss_pred hhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchh--HhhhhH------
Q 037185 259 HQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLD--KAQLQS------ 330 (533)
Q Consensus 259 k~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~E--Ka~l~a------ 330 (533)
.=|-.+|+..+.+-+-++.+.+ .|++|...++.+..+++- .+..+....|.|+ +.+|..
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAE-------qLqer~q~LKkk~~el~~------~~~~~~d~~~~~~~~~~~La~lL~~sr 78 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAE-------QLQERYQALKKKYRELIQ------EAAGFGDPSIPPEKENKNLAQLLSESR 78 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhh------hhcccCCccCCcccchhhHHHHHHHHH
Confidence 3345566666776666666553 355555555543332221 1222333344442 222322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 331 -EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 331 -EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
..-.|..++.+|..+|.+..-.|++|-.++.......+...--+.. ++=+.|=..+....+.|+.|..+|-.+
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~------~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP------HEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666666777777777777777877777777766655432222 666777777788888999999999999
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTLMAEAR----SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDR 485 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L~ad~~----sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~ 485 (533)
-.+.+.+..|.|.-..|++.|=.+++ ..+..|-- .+.+..---=|+.|+..+++|++.
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivD------------------IDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVD------------------IDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998866542 23333322 222322335567888888888877
Q ss_pred HHHHHh
Q 037185 486 QRMVIL 491 (533)
Q Consensus 486 Q~~~i~ 491 (533)
.+..|.
T Consensus 215 ~k~~i~ 220 (319)
T PF09789_consen 215 LKQTIN 220 (319)
T ss_pred HHHHHH
Confidence 776664
No 119
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.86 E-value=5.1 Score=46.75 Aligned_cols=54 Identities=37% Similarity=0.450 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185 469 VDELRFRVKELENEVD--RQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF 522 (533)
Q Consensus 469 v~eL~~rv~eLE~Eve--~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~ 522 (533)
+.++..++..++.++. .|+..-...-+++++++=++-.-++.++.....+..-+
T Consensus 656 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~ 711 (908)
T COG0419 656 LEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKL 711 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777665 35555555556666666667777777776655544443
No 120
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.77 E-value=4.3 Score=45.13 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 357 EDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 357 EdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
|.++..+...|.+++. ....+..-||.|+..++-+...|...|..++.+- ..|+..|+.++..|+|.|
T Consensus 459 eeeverLQ~lkgelEk-------at~SALdlLkrEKe~~EqefLslqeEfQk~eken---l~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 459 EEEVERLQQLKGELEK-------ATTSALDLLKREKETREQEFLSLQEEFQKHEKEN---LEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhc
Confidence 4455555555555554 5556667788999899999999988888875543 358888888888888865
No 121
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.73 E-value=2.5 Score=42.13 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=92.3
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL 335 (533)
..+..++.++.....++..|+.+++.-.+.+.++..-|..|+.-++.+-.+-..-++..-.--+++.-|+.++.+++..+
T Consensus 9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~ 88 (207)
T PF05010_consen 9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSL 88 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444557788888877777777777777777665554444433333333333445555555555555444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH----
Q 037185 336 LEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKL---- 411 (533)
Q Consensus 336 ~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~---- 411 (533)
--.-+.|=.+.. --|.-++ +++.--+.|+..+.+-...|....+.+..||.
T Consensus 89 E~sfsdl~~rye-----------------k~K~vi~--------~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAee 143 (207)
T PF05010_consen 89 EKSFSDLHKRYE-----------------KQKEVIE--------GYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEE 143 (207)
T ss_pred HhhHHHHHHHHH-----------------HHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333222 2111111 22222333444333444444444444444433
Q ss_pred HHHHhHHhHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHh
Q 037185 412 KYDMLMAEKDEI----NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASES 464 (533)
Q Consensus 412 k~e~L~~EK~~l----~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~ 464 (533)
+++.-..|.+.| .+.+..|-|-++-=.-+|..+++.|.|---+-.+|+.=-+.
T Consensus 144 kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 33445555666666667777777777777666555544433
No 122
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.59 E-value=4.1 Score=47.55 Aligned_cols=177 Identities=20% Similarity=0.316 Sum_probs=96.0
Q ss_pred HHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHH-------HHHhhHHhhhchhHhhhhHHHHHHH
Q 037185 264 QLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELK-------IALSDAEEKFTLDKAQLQSEMFCLL 336 (533)
Q Consensus 264 ~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK-------~~lsDAeeK~s~EKa~l~aEiskL~ 336 (533)
--+.|..+++++|.+|+.-..+.+-+.+|++.|..-|- ..++.|+ +.+.||--|.+.|-..++
T Consensus 18 gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLk---ec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~------- 87 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALK---ECMRQLRQVREEQEQKIHEAVAKKSKEWEKIK------- 87 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHH---HHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH-------
Confidence 56889999999999999999998999999998887554 3344333 344444444444333322
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHH-------HHHHH
Q 037185 337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNK-------IMDSL 409 (533)
Q Consensus 337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk-------~id~L 409 (533)
..|+.+|.+ +..++..+.+|+.- |..-+..+.+-|..|+. +|.+|
T Consensus 88 ---~~le~~l~e-------~~~~l~~~~~e~~~------------------l~~~l~~~~~~i~~l~~~~~~~e~~~~~l 139 (769)
T PF05911_consen 88 ---SELEAKLAE-------LSKRLAESAAENSA------------------LSKALQEKEKLIAELSEEKSQAEAEIEDL 139 (769)
T ss_pred ---HHHHHHHHH-------HHHHHHHHHhhhHH------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 234555555 44444444444333 33333334444444432 23334
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV 489 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~ 489 (533)
..+++..-.|...|+-+|+.|--++.-|. .|+.++. -.++.++|+--|=-.++..||-|-.|-|.+
T Consensus 140 ~~~l~~~eken~~Lkye~~~~~keleir~-----~E~~~~~---------~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 140 MARLESTEKENSSLKYELHVLSKELEIRN-----EEREYSR---------RAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555544444443333 2322221 123445555555556777777777666666
Q ss_pred Hhh
Q 037185 490 ILD 492 (533)
Q Consensus 490 i~e 492 (533)
+--
T Consensus 206 ~rk 208 (769)
T PF05911_consen 206 VRK 208 (769)
T ss_pred Hhc
Confidence 543
No 123
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.58 E-value=8.5 Score=47.29 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=16.4
Q ss_pred HHHHhhHHHHHHHHHHHhhhHHHHHhh
Q 037185 172 GRVIQYEDKLRVLNLSLQLSEEEVARL 198 (533)
Q Consensus 172 ~RiielEdELreaneKL~~sEEe~~rl 198 (533)
.||.+|+.+|.+....|...++++..+
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l 768 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRAL 768 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666655555
No 124
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.49 E-value=9.1 Score=47.05 Aligned_cols=53 Identities=15% Similarity=-0.011 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHc
Q 037185 470 DELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL 523 (533)
Q Consensus 470 ~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~ 523 (533)
..+......+++++...+..+. .+++++..-++++|...++|..-..+.+.|+
T Consensus 938 ~~l~~el~~~~~~~~~a~~~~~-~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~ 990 (1353)
T TIGR02680 938 ASGGRELPRLAEALATAEEARG-RAEEKRAEADATLDERAEARDHAIGQLREFA 990 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344433333333333 2334446666777777777777666666665
No 125
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.49 E-value=0.88 Score=52.43 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=83.1
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
|+-+.+...+.+..+.++++.|+..+.....+...+|..+.+++..|.+....++.-.+.-...+..|+.+++.+..--.
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~ 436 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAG 436 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566677888888899999999999999999999999988888888555544455557777776665444
Q ss_pred hhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHH
Q 037185 369 EITGLHEAQERGMQSEINQLKVEVCERDNRIEALN 403 (533)
Q Consensus 369 E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LN 403 (533)
+... ...-.|.|.-.++++|+..-+||...|
T Consensus 437 E~q~----~LnsAQDELvtfSEeLAqLYHHVC~cN 467 (717)
T PF09730_consen 437 ESQG----SLNSAQDELVTFSEELAQLYHHVCMCN 467 (717)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4433 445667778889999999999999988
No 126
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=8.5 Score=46.42 Aligned_cols=101 Identities=20% Similarity=0.326 Sum_probs=50.1
Q ss_pred hhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhch--------hhhhHHHHHHH-----HHHhhHHhhhchhHh
Q 037185 260 QLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL--------SDRNNEVAELK-----IALSDAEEKFTLDKA 326 (533)
Q Consensus 260 ~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~L--------s~~d~EIr~LK-----~~lsDAeeK~s~EKa 326 (533)
.++.++...+-.+...++++..-..+.-+|++++..+...+ ..+ |++++ +..+.-..-|.--|+
T Consensus 715 ~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~---ir~Yee~~~~~~~a~k~~ef~~q~~ 791 (1141)
T KOG0018|consen 715 RTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR---IREYEERELQQEFAKKRLEFENQKA 791 (1141)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee---eehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555666555554433 233 44433 333333333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
.+...|.... +.-+..+++.|+..+..++.++.-+.-
T Consensus 792 ~l~~~l~fe~--~~d~~~~ve~~~~~v~~~~~~~~~~~~ 828 (1141)
T KOG0018|consen 792 KLENQLDFEK--QKDTQRRVERWERSVEDLEKEIEGLKK 828 (1141)
T ss_pred HHhhhhhhee--cccHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 3333333333 356677777777777777777666554
No 127
>PF13514 AAA_27: AAA domain
Probab=95.27 E-value=9.2 Score=45.72 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHhh
Q 037185 171 LGRVIQYEDKLRVLNLSLQLSEEEVARL 198 (533)
Q Consensus 171 ~~RiielEdELreaneKL~~sEEe~~rl 198 (533)
..++..++.++..+..++...++.....
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1111)
T PF13514_consen 679 EEELQQLEQELEEAEAELQEAQEALEEW 706 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 128
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=95.24 E-value=5.1 Score=46.65 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 439 NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 439 ~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
++|.-|+.++.|= |+++ -..++|+.+-.+|+.|+
T Consensus 695 ~kieal~~qik~~-------~~~a----~~~~~lkek~e~l~~e~ 728 (762)
T PLN03229 695 EKIEALEQQIKQK-------IAEA----LNSSELKEKFEELEAEL 728 (762)
T ss_pred HHHHHHHHHHHHH-------HHHH----hccHhHHHHHHHHHHHH
Confidence 7777777666653 2222 13477888888887765
No 129
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.14 E-value=0.0079 Score=67.64 Aligned_cols=178 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh---hhh
Q 037185 321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE---RDN 397 (533)
Q Consensus 321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~---~~~ 397 (533)
...+.+.+++.+..|.++.-.++..+.++..+|..++.++..+..++.++.. .+..-+.|+.|+..|++.-+. .+.
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~-~A~~a~~LrDElD~lR~~a~r~~klE~ 315 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQA-EAREARALRDELDELREKADRADKLEN 315 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445567788888888888888887777777888888888877777666543 222334455555554443221 122
Q ss_pred HHHHHHHHH---HHHHHHHHHh-------HHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHH
Q 037185 398 RIEALNKIM---DSLKLKYDML-------MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK 467 (533)
Q Consensus 398 ~Ie~LNk~i---d~Lk~k~e~L-------~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~ 467 (533)
.|+..-+.+ +.+|.+...| +.-+..+.+.+ .-++.+..+|.....++.+|+.++.......+.+..
T Consensus 316 ~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel----~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~ 391 (713)
T PF05622_consen 316 EVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL----KKARALKSQLEEYKKQIQELEQKLSEESRRADKLEF 391 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 2222222222 22222233322 224456667777777777777777666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 037185 468 LVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFS 507 (533)
Q Consensus 468 ~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfs 507 (533)
....|..++..|+.+.++ +..--..-||.+.+|.++
T Consensus 392 e~~~L~ek~~~l~~eke~----l~~e~~~L~e~~eeL~~~ 427 (713)
T PF05622_consen 392 ENKQLEEKLEALEEEKER----LQEERDSLRETNEELECS 427 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhc
Confidence 666666777766666543 222222455666666544
No 130
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.13 E-value=3.3 Score=44.36 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 037185 396 DNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 396 ~~~Ie~LNk~id~Lk~k~e~L 416 (533)
+.++..|+.+.+..+.-|+.+
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 131
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.06 E-value=7.3 Score=43.44 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=33.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 434 ARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 434 ~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
+..=.+.|.++...|++..+---.+......+...|..|..++.+|=..+..-
T Consensus 446 ~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~ 498 (560)
T PF06160_consen 446 FFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLA 498 (560)
T ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334666777777777666665566666666677777777777665554443
No 132
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.04 E-value=3.2 Score=39.19 Aligned_cols=115 Identities=25% Similarity=0.360 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHH-----
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALN----- 403 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LN----- 403 (533)
..+|+++--.+..+..++.. ++.++++.+.= -+.||...-.-|+-+...|...|+++..++..|-
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k-------~~~ql~~ke~l---ge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAK-------LEEQLRQKEEL---GEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777 66666666551 1224444444555555555555555555554443
Q ss_pred --HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037185 404 --KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIA 460 (533)
Q Consensus 404 --k~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~ 460 (533)
+.+.++|.|+..+..+...+. .++..|+..+......+.++..+|..+-.
T Consensus 75 ~v~~L~h~keKl~~~~~~~~~l~-------~~l~~~~~~~~~~r~~l~~~k~~r~k~~~ 126 (177)
T PF13870_consen 75 TVQILTHVKEKLHFLSEELERLK-------QELKDREEELAKLREELYRVKKERDKLRK 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777766666665444 44577777777777777777777654433
No 133
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.01 E-value=3.2 Score=40.98 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=32.7
Q ss_pred hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185 375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME 454 (533)
Q Consensus 375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e 454 (533)
.++...|+.+...|+.++.-.+......+.-.+-++.++|.+...... -+..+..+...|+..+..
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~--------------l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR--------------LQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444444444443333334444444444433 344445555566666655
Q ss_pred HHH
Q 037185 455 HAE 457 (533)
Q Consensus 455 ~~~ 457 (533)
.++
T Consensus 215 eae 217 (240)
T PF12795_consen 215 EAE 217 (240)
T ss_pred HHH
Confidence 433
No 134
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.00 E-value=4 Score=40.07 Aligned_cols=132 Identities=18% Similarity=0.299 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
..|..+..+|..|-+-|+..+..+.-|..++++.+.+|+.+. .++.-+-..++.|..|-..-+.|
T Consensus 48 k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~---------------~~k~rl~~~ek~l~~Lk~e~evL 112 (201)
T PF13851_consen 48 KLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ---------------NLKARLKELEKELKDLKWEHEVL 112 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444446666666555555433 23333334455555666666666
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhhhhh--------hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTLMAEARSRD--------NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRV 476 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd--------~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv 476 (533)
..++.-+-.|++.+..+....+-||--+- .++..|..-|.+-.-+-.++++.+.---..|..+..++
T Consensus 113 ~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l 187 (201)
T PF13851_consen 113 EQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKL 187 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66667777777777777666666665442 34555555555555555666666655555555554443
No 135
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.96 E-value=5.6 Score=41.64 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.|....+-|+.+.....+.++.+|..+..+..+++.|+.|...+.+-+
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444555566666666777778888777777777777777766655443
No 136
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=5.5 Score=41.24 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHH------HHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKF------QERIAKVETNLSDRNNEVAELKIALSDAEEKFT 322 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kL------qeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s 322 (533)
++|.++...|+.||.+++.+.+.|..-...|.+..|=+-.= -+-|-.- .+++|.=.+|-.+...+ ++..++.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~S-kSfsD~IsRvtAi~~iv-~aDk~il 150 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNS-KSFSDLISRVTAISVIV-DADKKIL 150 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHcc-CcHHHHHHHHHHHHHHH-HHhHHHH
Confidence 45555556666666666666666666666665555322110 0011111 12445555665555443 4444432
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
.+.+.+=..|.+.+..+..++..+.....-+|.....|+..+.
T Consensus 151 ---e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~ 193 (265)
T COG3883 151 ---EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKA 193 (265)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333444556666666666666655555556666666665444
No 137
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.86 E-value=13 Score=45.47 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhh
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRD 438 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd 438 (533)
.|+.+++.|-.+--++-..|..|.-...+-...++....|.+.|+.+|..++.+|+.|-
T Consensus 1693 ~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 35555555555444444444444433444444567788888888888887777776553
No 138
>PLN02939 transferase, transferring glycosyl groups
Probab=94.85 E-value=9.1 Score=45.89 Aligned_cols=121 Identities=25% Similarity=0.289 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHhhHH-hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhh
Q 037185 302 DRNNEVAELKIALSDAE-EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERG 380 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAe-eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~ 380 (533)
++.+.|.+|+..|..|. .||+.++ +..|++....++++|..-..+. -.+++ +|.+--.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~ 387 (977)
T PLN02939 328 DLRDKVDKLEASLKEANVSKFSSYK------VELLQQKLKLLEERLQASDHEI---HSYIQ-----------LYQESIKE 387 (977)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhHHH------HHHHHHHHHHHHHHHHhhHHHH---HHHHH-----------HHHHHHHH
Confidence 55666666666666543 3444442 2345566666666666421111 11111 12222234
Q ss_pred hhhHHHHHHHHHhhh--hhHHHHHHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 037185 381 MQSEINQLKVEVCER--DNRIEALNKIMD-SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG 442 (533)
Q Consensus 381 L~gEie~Lk~El~~~--~~~Ie~LNk~id-~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~ 442 (533)
.|..+.+|+.|-..+ ..-+..++-+|= .|=..+|.+.-++---......|-.-|-.||..|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~~~~~~~~~ 452 (977)
T PLN02939 388 FQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIR 452 (977)
T ss_pred HHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhhhHH
Confidence 555666666655332 222333443332 35556665544432222223333334467777663
No 139
>PRK11281 hypothetical protein; Provisional
Probab=94.75 E-value=14 Score=45.04 Aligned_cols=31 Identities=19% Similarity=0.032 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKI 360 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdei 360 (533)
.-|.++++.|..|-..|-..-.+.+.+-.+.
T Consensus 278 p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~ 308 (1113)
T PRK11281 278 PLVAQELEINLQLSQRLLKATEKLNTLTQQN 308 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3388888999999999888444444443333
No 140
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.71 E-value=2.1 Score=47.61 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
+..+-..|+++|+....+...|+. .-++++.+.-|++|-+. +-+..-++++
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~e----------------------a~k~s~~i~~l~ek~r~-------l~~D~nk~~~ 316 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQE----------------------AMKISQKIKTLREKWRA-------LKSDSNKYEN 316 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH-------HhhhHHHHHH
Confidence 455556666777766555555443 33666777777777776 4444444444
Q ss_pred HHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 037185 366 EKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLK 412 (533)
Q Consensus 366 EK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k 412 (533)
.-..|.. .-++--|.+++|++++...+.+|+.|.-.+|.|+..
T Consensus 317 ~~~~mk~----K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 317 YVNAMKQ----KSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHH----HHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333332 344556888999999999999999888777777653
No 141
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.68 E-value=4.2 Score=43.59 Aligned_cols=33 Identities=36% Similarity=0.356 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 451 LHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 451 L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
|...-..+-+....+...+..|+....+++.++
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444
No 142
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.62 E-value=5.2 Score=40.99 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAK 426 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k 426 (533)
.+..+...+..++..+..+..+.+.+...
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.62 E-value=5 Score=39.40 Aligned_cols=102 Identities=20% Similarity=0.304 Sum_probs=74.5
Q ss_pred HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHH
Q 037185 263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342 (533)
Q Consensus 263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~L 342 (533)
+-+..+.++|+..+.+...-.+.+..+.....+|..-|.....++.+|+..+.+-+ -+|.+ +..+......+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~----L~~~k~rl~~~ 98 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQS----LQNLKARLKEL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
Confidence 34444556667777777777788899999999999999999999999999998533 33443 33445555566
Q ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 343 DARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 343 e~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
+.+|+.+.-+...++..+.+++.|+-++..
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888887776654
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.41 E-value=0.27 Score=47.18 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=41.2
Q ss_pred HHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185 356 LEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 356 lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~ 435 (533)
+.+++-.++-.+.++.- +...+..++..+...+......|..|...+..|+.++..|..+..+.+.-+..|..++.
T Consensus 79 l~~ELael~r~~~el~~----~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQ----QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc----cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444332 44455555555555555555556666556666666665555555555555555555555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037185 436 SRDNHIGQIEEHSRKLHMEHAELIAA 461 (533)
Q Consensus 436 sRd~~I~qme~hl~qL~~e~~~l~~~ 461 (533)
+-.-+...+++.+..|.-|..+||..
T Consensus 155 ~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777666543
No 145
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.34 E-value=0.27 Score=47.18 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhh
Q 037185 250 RLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ 329 (533)
Q Consensus 250 ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~ 329 (533)
|++.+....-+++.+|..+...+..++.++......+..|+..++.|++.+.+++.+|++....+. .++
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e-----------~l~ 150 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE-----------ILQ 150 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 334444455556666666666666666666666666666666666666666666666666555554 344
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e 348 (533)
.|+.-|+=+..+++.+++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.32 E-value=0.47 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhh
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
.+..|+.+++.+.+|.+++..=+
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL 32 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFL 32 (314)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777776655
No 147
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.29 E-value=14 Score=43.06 Aligned_cols=139 Identities=19% Similarity=0.360 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHH-HHHHHHHHHH-HHHHhHHhHH--HHHHHHHHHHHHhhhhhhhhhhHHH----------
Q 037185 381 MQSEINQLKVEVCERDNRIEA-LNKIMDSLKL-KYDMLMAEKD--EINAKVNTLMAEARSRDNHIGQIEE---------- 446 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~-LNk~id~Lk~-k~e~L~~EK~--~l~~kv~~L~ad~~sRd~~I~qme~---------- 446 (533)
|..+.+.+++++...+.+|.. |.++=..-+. .++++..+|. -+.+|+.+|..-|......|..|..
T Consensus 546 Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 546 LRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766 3222111111 1233333322 3445555555555555555444321
Q ss_pred ----HHHHHHHHHHHHHHhhHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhhHHHHH-HH------HH
Q 037185 447 ----HSRKLHMEHAELIAASESSRKLVDELR-----------FRVKELENEVDRQRMVILDAAEEKREA-IR------QL 504 (533)
Q Consensus 447 ----hl~qL~~e~~~l~~~~~~~~~~v~eL~-----------~rv~eLE~Eve~Q~~~i~e~aEeKREA-IR------QL 504 (533)
.++.+....-+|=.+.+++.+...+.. .-..+|..||++-+....++.--|+|. || -.
T Consensus 626 aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeM 705 (786)
T PF05483_consen 626 AESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEM 705 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 122222222222222344444433332 345788899999999999888888875 22 33
Q ss_pred hhhhHhhhhhHHHHH
Q 037185 505 CFSLEHYRSGYQELR 519 (533)
Q Consensus 505 Cfslehyr~~y~~L~ 519 (533)
---.+-|.+-|++..
T Consensus 706 VALMEKHK~qYDkiV 720 (786)
T PF05483_consen 706 VALMEKHKHQYDKIV 720 (786)
T ss_pred HHHHHHhHHHHHHHH
Confidence 334577777777653
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=15 Score=42.65 Aligned_cols=116 Identities=24% Similarity=0.268 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHh---hHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhh
Q 037185 302 DRNNEVAELKIALS---DAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQE 378 (533)
Q Consensus 302 ~~d~EIr~LK~~ls---DAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~ 378 (533)
+.+-.|..|=+.+- |+.=|...|+.......--|.++..-|+..+.-+-.....++..+++++. |.
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee-----------q~ 533 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE-----------QE 533 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 33444444433333 33445567888888888888888888888888877777778888888877 77
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 037185 379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVN 428 (533)
Q Consensus 379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~ 428 (533)
+.|++....+..++-...--|+..++.+.+++...+-|..+.+...+++.
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le 583 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLE 583 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777777777777777777777777777766666653
No 149
>PLN03188 kinesin-12 family protein; Provisional
Probab=93.86 E-value=22 Score=43.88 Aligned_cols=156 Identities=24% Similarity=0.238 Sum_probs=84.0
Q ss_pred hhHHHHHhhHHHHHHhhh----hhhhhh-------------------------hhhHHhHHHHHHHHHHHH----HHHHH
Q 037185 190 LSEEEVARLKSELHSQIE----SAKRDV-------------------------NIKEADLEMERRQVFELQ----NYVRE 236 (533)
Q Consensus 190 ~sEEe~~rlk~el~k~~~----~a~~dl-------------------------~i~k~kLe~ee~ei~~LQ----~~v~E 236 (533)
++-++|..||.+|+-++. .+.+.. ...+.+|+.++-+-.+.+ ...+|
T Consensus 990 vll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wisltee 1069 (1320)
T PLN03188 990 VLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEE 1069 (1320)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHH
Confidence 455888889988887752 221110 122334444433333332 33356
Q ss_pred HHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhh
Q 037185 237 LETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSD 316 (533)
Q Consensus 237 LE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD 316 (533)
|+..++.-.-=.++..-..+..|.+-++|+.|-.-+--=-+++ +-+-++|||....|-+.=-....=|.+.|.+-+-
T Consensus 1070 lr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~---~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaak 1146 (1320)
T PLN03188 1070 LRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARM---LEQYADLEEKHIQLLARHRRIQEGIDDVKKAAAR 1146 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444221122333344567777777776655221112222 2567889999888877655556667777777665
Q ss_pred HHhhhc--hhHhhhhHHHHHHHHH-----------HHHHHHHHHH
Q 037185 317 AEEKFT--LDKAQLQSEMFCLLEK-----------QALLDARLKE 348 (533)
Q Consensus 317 AeeK~s--~EKa~l~aEiskL~E~-----------~~~Le~kL~e 348 (533)
|=-|=- -=-..|-|||+-|--+ |.+|..+|+.
T Consensus 1147 ag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1147 AGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 533310 0013566666665544 7777777774
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.74 E-value=9.8 Score=39.49 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185 408 SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451 (533)
Q Consensus 408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL 451 (533)
.++..-..|..=+..++.++.+|.+-...=+....+|+....++
T Consensus 152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~ 195 (265)
T COG3883 152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEK 195 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666666555555444444444443
No 151
>PF13166 AAA_13: AAA domain
Probab=93.65 E-value=15 Score=41.17 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185 387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451 (533)
Q Consensus 387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL 451 (533)
.++.++....+.+..+.+.+..++.++..+..++..++.++..|.+.+.+-+.-+..+...|..+
T Consensus 407 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 407 KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33344433444555555555566666666666666666666666666666666666677766666
No 152
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.64 E-value=12 Score=40.20 Aligned_cols=61 Identities=13% Similarity=-0.019 Sum_probs=34.9
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 037185 291 ERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWEL 351 (533)
Q Consensus 291 eri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~ 351 (533)
.++..+.++......++...+..+....+.+.-+++.+...|..+..+...++..+..++.
T Consensus 140 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 140 NLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444445555555665555555555566666666666666666666666666655433
No 153
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=17 Score=41.64 Aligned_cols=55 Identities=31% Similarity=0.338 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~ 405 (533)
+-|-+|-+.|-|+|++|.-.... +|+ =|-|-|-||.|+-..+..|+-||..
T Consensus 166 ~RllseYSELEEENIsLQKqVs~-----------LR~------------------sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSN-----------LRQ------------------SQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHH-----------Hhh------------------hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888887766554 121 1223344555555556677888876
Q ss_pred HHHH
Q 037185 406 MDSL 409 (533)
Q Consensus 406 id~L 409 (533)
+++.
T Consensus 217 ~ee~ 220 (772)
T KOG0999|consen 217 LEEA 220 (772)
T ss_pred HHHH
Confidence 6654
No 154
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.40 E-value=3.3 Score=41.34 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHhh
Q 037185 380 GMQSEINQLKVEVCE 394 (533)
Q Consensus 380 ~L~gEie~Lk~El~~ 394 (533)
.|+.+++.|+.||..
T Consensus 135 ~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 135 SLRREVERLRAELQR 149 (202)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355555555555433
No 155
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.35 E-value=15 Score=41.63 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHH
Q 037185 439 NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR-VKELENEVD 484 (533)
Q Consensus 439 ~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r-v~eLE~Eve 484 (533)
..+...+.|+.+|+-+..++-+....+...++..|.+ +..|++.|.
T Consensus 335 ~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~ 381 (557)
T COG0497 335 AQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVT 381 (557)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666667777777888888865 467888874
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.34 E-value=6.4 Score=38.60 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLKE 348 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e 348 (533)
.|..+..++..|..++.+
T Consensus 28 ~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 157
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.27 E-value=12 Score=39.15 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHh
Q 037185 247 EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKA 326 (533)
Q Consensus 247 s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa 326 (533)
-+++|..|.+.-+.|..++..++.--+.+-.++-..-.|..++--.|..||+++.-. +-.|+..|-|--=+.|+++
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps---~~qlR~~llDPAinl~F~r- 181 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPS---VAQLRSTLLDPAINLFFLR- 181 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHhhChHHHHHHHH-
Confidence 346677777777778888888887777777777777777777777777777765532 4456666666555555543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWE-----LQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEA 401 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e-----~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~ 401 (533)
|+.++-.--.....+...|..|- -.++-|=++-|-|+.|+.|++. +.-.|-|-.|-.+++=-+..-+.
T Consensus 182 -lK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~------q~s~Gria~Le~eLAmQKs~seE 254 (330)
T KOG2991|consen 182 -LKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGH------QASEGRIAELEIELAMQKSQSEE 254 (330)
T ss_pred -HHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHh------hhhcccHHHHHHHHHHHHhhHHH
Confidence 33333333333333444444453 3566788888999999988864 56667777776666433333333
Q ss_pred HHHHHH
Q 037185 402 LNKIMD 407 (533)
Q Consensus 402 LNk~id 407 (533)
|...++
T Consensus 255 lkssq~ 260 (330)
T KOG2991|consen 255 LKSSQE 260 (330)
T ss_pred HHHhHH
Confidence 333333
No 158
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.25 E-value=14 Score=44.50 Aligned_cols=186 Identities=22% Similarity=0.214 Sum_probs=111.6
Q ss_pred hchhhhhHHHHHHHHHHhhHHhhh----chhHh-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 298 TNLSDRNNEVAELKIALSDAEEKF----TLDKA-QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 298 t~Ls~~d~EIr~LK~~lsDAeeK~----s~EKa-~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
+=+-+.-.||..||..|..|.+|- +.|+. +..+|.-...+.+..++.++. .++.+++.+.+--+-+.+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~-------~~~~~l~~~~e~~~~~~~ 476 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELE-------NLEKQLKDLTELYMNQLE 476 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Confidence 335578889999999999999983 33333 133333344444444444444 477777777664432222
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 373 LHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
....|+.+..+|+..|.....+++.+...+..++..+ .--+.-|.+|+.--.-++
T Consensus 477 ----~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l---------------------~~~e~ii~~~~~se~~l~ 531 (1041)
T KOG0243|consen 477 ----IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL---------------------KEEEEIISQQEKSEEKLV 531 (1041)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 3334555555555555444444444444444333332 122233334433333333
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhH
Q 037185 453 MEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGY 515 (533)
Q Consensus 453 ~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y 515 (533)
=..++|-...+.+...++-|-.++..+.+.-...+.+|.+-..+=-+-+++|-=.+.+-=+.+
T Consensus 532 ~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~ 594 (1041)
T KOG0243|consen 532 DRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQ 594 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhH
Confidence 336666677788888888888888888888888888888887777777777777777777766
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.03 E-value=3.7 Score=37.76 Aligned_cols=95 Identities=22% Similarity=0.368 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh---hhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037185 385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA---RSRDNHIGQIEEHSRKLHMEHAELIAA 461 (533)
Q Consensus 385 ie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~---~sRd~~I~qme~hl~qL~~e~~~l~~~ 461 (533)
++.|...|-.++.+|..+ +.++..|..+++.+.++|..|+... ..-...+..+...+..|.-.+.-+.-=
T Consensus 18 ve~L~s~lr~~E~E~~~l-------~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASL-------QEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 3333344444444444444444433 445556666666666666555544444
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 462 SESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 462 ~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
.++-...|.||+..|.+|-.....|
T Consensus 91 lGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777776665554
No 160
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.99 E-value=22 Score=41.40 Aligned_cols=173 Identities=20% Similarity=0.192 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 037185 224 RRQVFELQNYVRELETRLSE----SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETN 299 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~----l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~ 299 (533)
+.+|--||.+..+=+..... |.-|...+.-|++.++....-|..++.+..++-..|+.=+.-..+...+-.-+.+.
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~ 318 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEED 318 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777555443333333 33344566667788888888888888888888888876665555544455555555
Q ss_pred hhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 300 LSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK-------EWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~-------e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
|..-...|-.|-+.-...-+-+.--|++-...+..+.-.+..|.+-|+ .++-+..++-.++..--++-.||..
T Consensus 319 lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk 398 (786)
T PF05483_consen 319 LQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTK 398 (786)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 554444444444444334444444455555555555555555555444 4344444444444444444444443
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhhhHHH
Q 037185 373 LHEAQERGMQSEINQLKVEVCERDNRIE 400 (533)
Q Consensus 373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie 400 (533)
+-..--.+++-|+..++...+.+.
T Consensus 399 ----~k~~ke~eleeL~~~L~e~qkll~ 422 (786)
T PF05483_consen 399 ----QKNNKEVELEELKKILAEKQKLLD 422 (786)
T ss_pred ----HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111222235556666666664443
No 161
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.83 E-value=29 Score=42.33 Aligned_cols=112 Identities=12% Similarity=0.127 Sum_probs=53.2
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhch---hHh-
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTL---DKA- 326 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~---EKa- 326 (533)
...++....-+.+++...+.+..+..++.+=-+.+..-+..+|..+...+..+++.|...+.+-++.--+-.. +++
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~ 254 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSG 254 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3333333333333444444444433333322223333344455555555555555555544333322111000 121
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ 362 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq 362 (533)
.....|.++.+.|..|-..|-..-.+...+-.+..+
T Consensus 255 ~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~ 290 (1109)
T PRK10929 255 DLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQ 290 (1109)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234458888899999999998854444444444333
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.82 E-value=11 Score=43.65 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHH-------HHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKI-------ALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~-------~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
+|.+|+......-+.+..++..+-+ .+|.|+.+|+-|-..+...+..|......+..++..
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444444444443322 477788887777777666666655555555444444
No 163
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=92.81 E-value=18 Score=39.75 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh
Q 037185 174 VIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE 207 (533)
Q Consensus 174 iielEdELreaneKL~~sEEe~~rlk~el~k~~~ 207 (533)
+..+=+||++.++-+-.++|...+||.++++...
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~ 295 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYK 295 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455568999999999999999999998885543
No 164
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.76 E-value=25 Score=41.33 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=115.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHH-------HHHHHHHHhh
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQ-------NYVRELETRL 241 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ-------~~v~ELE~~~ 241 (533)
++..|+-++|+.+.++.--+...++.+.+++........ .. ...+.+.-..+..+...| ..+..||-.+
T Consensus 25 ~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~a--qk--~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~L 100 (916)
T KOG0249|consen 25 PLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMA--QK--EDMEERITTLEKRFLNAQRESTSIHDLNDKLENEL 100 (916)
T ss_pred CCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHh--hh--cccccccchHHHHHHhccCCCCCcccchHHHHHHH
Confidence 445678889999999998888888998888644333221 00 000111111233333333 2233344332
Q ss_pred hcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----------hhhHHHHHHH
Q 037185 242 SESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----------DRNNEVAELK 311 (533)
Q Consensus 242 ~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----------~~d~EIr~LK 311 (533)
.+= +.++--..+++..||.+|+.+.+...+--+ +++---=-++||.|++.+-..-. .++.++..+-
T Consensus 101 ank---da~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~n 176 (916)
T KOG0249|consen 101 ANK---DADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELN 176 (916)
T ss_pred hCc---chhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 222 233444567888999999988886554433 32222223445555544433322 3333333333
Q ss_pred HHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185 312 IALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE 391 (533)
Q Consensus 312 ~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E 391 (533)
+.|.+|.++.-.+ +.+...+-+..- |+.-+|--.++.-...++.|-.+
T Consensus 177 aeL~rarqreemn-------------------------eeh~~rlsdtvd-------ErlqlhlkermaAle~kn~L~~e 224 (916)
T KOG0249|consen 177 AELQRARQREKMN-------------------------EEHNKRLSDTVD-------ERLQLHLKERMAALEDKNRLEQE 224 (916)
T ss_pred HHHHHHHHHHHhh-------------------------hhhccccccccH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333331111 111111111111 22223333344445567788888
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 037185 392 VCERDNRIEALNKIMDSLKLKYDMLMAEKDEIN 424 (533)
Q Consensus 392 l~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~ 424 (533)
+..-.+.+.++|.+=+.|...++.|..|.+.++
T Consensus 225 ~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 225 LESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888999999998888888888888888877
No 165
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=92.72 E-value=20 Score=40.10 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=91.8
Q ss_pred hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH-----------HHhhhhchhhHhhhhhhhHHHH
Q 037185 319 EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET-----------EKMEITGLHEAQERGMQSEINQ 387 (533)
Q Consensus 319 eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea-----------EK~E~~~~~~~q~~~L~gEie~ 387 (533)
+++-.|+.--.+++.+++.....|+..+.+ +|++++.++. +|+-.- +--..|.-..||
T Consensus 312 ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d-------~EAq~r~l~s~~~~q~~~~h~~ka~~~----~~~~~l~~~~ec 380 (554)
T KOG4677|consen 312 EETRVELPFSAEDSAHIQDQYTLLRSQIID-------IEAQDRHLESAGQTQIFRKHPRKASIL----NMPLVLTLFYEC 380 (554)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhHHHHHHhhhHhhhhh----hchHHHHHHHHH
Confidence 344556666677888999999999999998 5555555544 222110 011123333334
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh--hhhhhhhHHHHHHHHH--HHHHHHHHhhH
Q 037185 388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS--RDNHIGQIEEHSRKLH--MEHAELIAASE 463 (533)
Q Consensus 388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s--Rd~~I~qme~hl~qL~--~e~~~l~~~~~ 463 (533)
++.|-. .--+.+..-+.+.-.=+-+| ..++..|.++++. |++...+++.-++||- +.+....-+.
T Consensus 381 ~~~e~e-------~~~~~~~r~~~~~qski~dk---~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~- 449 (554)
T KOG4677|consen 381 FYHETE-------AEGTFSSRVNLKKQSKIPDK---QYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLER- 449 (554)
T ss_pred HHHHHH-------HhhhhhhhccchhhccCcch---HHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHH-
Confidence 433221 11111222222222222233 3455566666654 5788999999999986 3343333222
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHH--HHHHHH
Q 037185 464 SSRKLVDELRFRVKELENEVD---RQRMVILDAAEEKREAIRQLCFSLEHYRSGYQ--ELRQAF 522 (533)
Q Consensus 464 ~~~~~v~eL~~rv~eLE~Eve---~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~--~L~~~~ 522 (533)
+-.-..-|..++.-|++-|. --...+-...+.|+ +-.+++.||+-.. ++|.+.
T Consensus 450 -v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~-----~~~v~~l~~d~~~~~q~r~a~ 507 (554)
T KOG4677|consen 450 -VVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKC-----HDVVIDLYRDLKDRQQLRAAR 507 (554)
T ss_pred -HHHHHhhhhhhHHHHHHHhccccccceeeccCCCccc-----ccccchHhhhhhhhHHHHHHH
Confidence 22223335577777777765 22223333445553 3456777777554 555544
No 166
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.65 E-value=12 Score=37.40 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=64.9
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL 335 (533)
..+..++.+.+.+..++++...-|..-.+..-++-+.|..|+.+-+.+-..|.++...+.--+++|-.=|++....|..-
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~A 148 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKA 148 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777777777777777888888888888888888888888777777777777766655555
Q ss_pred HHHHHHHHHHH
Q 037185 336 LEKQALLDARL 346 (533)
Q Consensus 336 ~E~~~~Le~kL 346 (533)
.++++.+..+.
T Consensus 149 Neei~~v~~~~ 159 (207)
T PF05010_consen 149 NEEIAQVRSKH 159 (207)
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 167
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.62 E-value=19 Score=39.66 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
|+..-+.|+.+..-.--+..+....+.+|+++--.+..|++.|..-+++|..|.
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lE 265 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLE 265 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444455555555555555555555555554433
No 168
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.57 E-value=16 Score=38.57 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=21.5
Q ss_pred hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185 378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAK 426 (533)
Q Consensus 378 ~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k 426 (533)
.++|..+|-.++....+.-..|..|-..+.....++--+-.+.|.+..+
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rke 208 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKE 208 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444444443333333333333333333
No 169
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.56 E-value=21 Score=39.96 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=28.6
Q ss_pred hhhchhHhhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHhHH
Q 037185 319 EKFTLDKAQLQSEMFCLLEKQALLDARLK-----EWELQGKALEDKIRQCET 365 (533)
Q Consensus 319 eK~s~EKa~l~aEiskL~E~~~~Le~kL~-----e~e~~~~~lEdeirqlea 365 (533)
+.|.++.-.+..+|..+.+........|. +.+.....+.++|.+++.
T Consensus 241 ~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd 292 (560)
T PF06160_consen 241 EGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD 292 (560)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777776666655 344444555555555555
No 170
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.53 E-value=5.9 Score=42.58 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHH
Q 037185 255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFC 334 (533)
Q Consensus 255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEisk 334 (533)
.|+++++-+-++.-|.|...++..=++-+.+..-.++-+.+.|. +.-+|..=+.+
T Consensus 84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~-------------------------~~q~LE~li~~ 138 (401)
T PF06785_consen 84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKG-------------------------DIQHLEGLIRH 138 (401)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-------------------------hHHHHHHHHHH
Confidence 35666666666666666666655544444444444444444333 23345555668
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHH
Q 037185 335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEI 385 (533)
Q Consensus 335 L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEi 385 (533)
+-|+|..|+-+|.++--+|.-.|++-.++.-|-+|+-. +.+.|..|-
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la----yqq~L~~ey 185 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA----YQQELNDEY 185 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 88999999999999988998899988888888787754 445554443
No 171
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.53 E-value=20 Score=39.63 Aligned_cols=89 Identities=20% Similarity=0.318 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh----hHHHHHHHHHHHHHHHHHh--------------hHhHHH
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG----QIEEHSRKLHMEHAELIAA--------------SESSRK 467 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~----qme~hl~qL~~e~~~l~~~--------------~~~~~~ 467 (533)
++.|+.+.+.+..|...++-.|..|.+++.+...+.. .+..|+..+......+++. -+.+.+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~ 355 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSR 355 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777766665533 3344444444333222222 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185 468 LVDELRFRVKELENEVDRQRMVILDAA 494 (533)
Q Consensus 468 ~v~eL~~rv~eLE~Eve~Q~~~i~e~a 494 (533)
.-+.+..|+.+-+.|+.+-+..++..+
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556777777777777777776655
No 172
>PLN02939 transferase, transferring glycosyl groups
Probab=92.51 E-value=30 Score=41.72 Aligned_cols=85 Identities=28% Similarity=0.350 Sum_probs=57.5
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~ 336 (533)
....|..+--.+..|+..+|.++ -+|.+-.+++..++..-+-++.-+++|+-.+..|++..+ +=+.|+-| .+-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 299 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAEL----IEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS-KLSPLQYD--CWW 299 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hccchhHH--HHH
Confidence 34444455555667777777777 677888899999999999999999999999988877643 22233333 255
Q ss_pred HHHHHHHHHHHH
Q 037185 337 EKQALLDARLKE 348 (533)
Q Consensus 337 E~~~~Le~kL~e 348 (533)
|....|+.-|..
T Consensus 300 ~~~~~~~~~~~~ 311 (977)
T PLN02939 300 EKVENLQDLLDR 311 (977)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 173
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.46 E-value=3.1 Score=37.94 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 037185 394 ERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEH 447 (533)
Q Consensus 394 ~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~h 447 (533)
+....+-.|+..|...|.-.+.|-.+++.|.+-+.+|.+.-.+|...|..+...
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777788888888999999999999999999999998888444333
No 174
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.41 E-value=11 Score=36.44 Aligned_cols=49 Identities=16% Similarity=0.418 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
..+...+..|+..+..-...+..|...|..++.++..+..++..|.+..
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777777777777776666554
No 175
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.21 E-value=37 Score=42.05 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHhhHHHHHHhh
Q 037185 177 YEDKLRVLNLSLQLSEEEVARLKSELHSQI 206 (533)
Q Consensus 177 lEdELreaneKL~~sEEe~~rlk~el~k~~ 206 (533)
.+.++.++..+|+...+++.++.+++....
T Consensus 738 ~~~~i~e~~~~l~~~~~el~~~~~~~e~~~ 767 (1294)
T KOG0962|consen 738 IDKEIPELEKELQEVYEELGDLSEEEEDDE 767 (1294)
T ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 456778889999999999988876655443
No 176
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.10 E-value=0.26 Score=52.00 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=32.0
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHH
Q 037185 209 AKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLK 288 (533)
Q Consensus 209 a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~k 288 (533)
-..||.---+.|-.-|..+..|+..|..+..+..+|. ..+-.+...+.+++..|..+...|..+...+..=...|..
T Consensus 26 s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLs---s~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~ 102 (326)
T PF04582_consen 26 SPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLS---SDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS 102 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3456666666777777777777777777776666654 3345555778888888888888888888888888888888
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWEL 351 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~ 351 (533)
|+..+......++++...|..+...++ +|++.++-+.-.++.|+.|++.+|.
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsTdvs-----------NLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALSTDVS-----------NLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp ---------------HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhhh-----------hhhhhhhhhcchHhhHHHHHHHHhc
Confidence 888888888888888888888888887 8999999999999999999998543
No 177
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.95 E-value=40 Score=41.80 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=74.5
Q ss_pred HHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh----------hHHHHHHHHHHhhH---HhhhchhHhhhhH
Q 037185 264 QLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR----------NNEVAELKIALSDA---EEKFTLDKAQLQS 330 (533)
Q Consensus 264 ~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~----------d~EIr~LK~~lsDA---eeK~s~EKa~l~a 330 (533)
+|+..|.++..+++.|+-.-+|| |++.|+.|+++|... .+-+=.|...+.-. .-+--+|-..-..
T Consensus 968 e~~~~~~e~~~~~~~~d~~ErEv--ll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~ 1045 (1320)
T PLN03188 968 ELKRVQDELEHYRNFYDMGEREV--LLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESP 1045 (1320)
T ss_pred HHHHHHHHHHHHHhhccchhHHH--HHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccch
Confidence 55566777777888886444555 577888888777622 12222222222100 0000000001111
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLK----------EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKV 390 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~----------e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~ 390 (533)
|..=++|+...++...+ ++|....+.|....+|+.||.=+++|-+|-++.|+|-+-+|-.
T Consensus 1046 e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ 1115 (1320)
T PLN03188 1046 EKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQ 1115 (1320)
T ss_pred hHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223444444444333 6778888889999999999999999999999999999877543
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.94 E-value=1.8 Score=44.99 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=29.0
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhh
Q 037185 323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEIT 371 (533)
Q Consensus 323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~ 371 (533)
.+-..+..++.+|..+...|...|++++.+...+..++..++++..+..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666666666666666555443
No 179
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=25 Score=39.33 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=50.4
Q ss_pred hhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh
Q 037185 240 RLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE 319 (533)
Q Consensus 240 ~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee 319 (533)
...-|+.+.+=+.+|+..+..++-+..-+.....-.+-=|...+. .|-+-..+.+++=.. -++|++|++.|-.+.+
T Consensus 284 l~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl---~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~e 359 (521)
T KOG1937|consen 284 LIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKL---QLREELKNLETEDEE-IRRIQELEQDLEAVDE 359 (521)
T ss_pred HHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHhcccchHHH-HHHHHHHHHHHHHHHH
Confidence 344566666666666666666666555555544333333433332 233333344432222 5888888888886666
Q ss_pred hhc---hhHhhhhHHHHHHHH
Q 037185 320 KFT---LDKAQLQSEMFCLLE 337 (533)
Q Consensus 320 K~s---~EKa~l~aEiskL~E 337 (533)
.|- -.-.+|.+++.+|=.
T Consensus 360 ei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCc
Confidence 654 444455555554443
No 180
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=28 Score=39.94 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHH
Q 037185 483 VDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQ 516 (533)
Q Consensus 483 ve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~ 516 (533)
.++|-...++-.-.-||+=--|-=-|+||||..+
T Consensus 227 AekQlEEALeTlq~EReqk~alkkEL~q~~n~e~ 260 (772)
T KOG0999|consen 227 AEKQLEEALETLQQEREQKNALKKELSQYRNAED 260 (772)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhh
Confidence 3555555566666666665556666788887765
No 181
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.87 E-value=23 Score=39.00 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh---hhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 037185 167 YEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE---SAKRDVNIKEADLEMERRQVFELQNYVRELETRLSE 243 (533)
Q Consensus 167 ~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~---~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~ 243 (533)
.+++..-+-.+-.||..+.+.+..-|-+-.....+|++-.. .+...+.-.+.++-....+.-.++.|-.+|.+.+..
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888888877777776665555566665431 111111111111111122222222333333322211
Q ss_pred chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhh---HHhh
Q 037185 244 SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSD---AEEK 320 (533)
Q Consensus 244 l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD---AeeK 320 (533)
|- ++-.++.+....|+++-+-+|-- -++|..++.+..+=+++|..-..+|..+.+.|..+...+.. |-+.
T Consensus 156 l~---~qr~ql~aq~qsl~a~~k~LQ~s----~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 156 LA---EQRRQLEAQAQSLQASQKQLQAS----ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22233333333343333333321 24556666666666777777777777777777776666543 3444
Q ss_pred hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhH
Q 037185 321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSE 384 (533)
Q Consensus 321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gE 384 (533)
.-.+-.+..+-|+.+--.++.-++.+.+-|.+.+-+|.+.--++-|.++++..|.++..--++.
T Consensus 229 ~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~ 292 (499)
T COG4372 229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5556667777788887778888888887777777777777777777777776555554433333
No 182
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.77 E-value=21 Score=38.36 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=4.0
Q ss_pred HHHHHHHHhh
Q 037185 289 FQERIAKVET 298 (533)
Q Consensus 289 Lqeri~~lkt 298 (533)
|+.++++|.+
T Consensus 109 ~~~~~~rL~a 118 (457)
T TIGR01000 109 LKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 183
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.68 E-value=38 Score=41.04 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCE 364 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqle 364 (533)
-++.++-+|.+++.-+..+-++++.++.-+..++.+..
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~ 296 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQ 296 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHH
Confidence 55666666666666666666664443333333433333
No 184
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.64 E-value=32 Score=40.16 Aligned_cols=235 Identities=20% Similarity=0.256 Sum_probs=138.9
Q ss_pred hhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHH
Q 037185 208 SAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVL 287 (533)
Q Consensus 208 ~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~ 287 (533)
..++-|.-+...++.++....-|| .+|..+. +.-.+++..+....++|..+.+-|.+.-..|.+.+..|.
T Consensus 356 iLq~SLqDK~AElevERv~sktLQ---~ELsrAq-------ea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve 425 (739)
T PF07111_consen 356 ILQHSLQDKAAELEVERVGSKTLQ---AELSRAQ-------EARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVE 425 (739)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666667777777777777 5555442 344456677777777777777777777777766554433
Q ss_pred HHHHHHHHHhhchhhh---hH----------HHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185 288 KFQERIAKVETNLSDR---NN----------EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGK 354 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~---d~----------EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~ 354 (533)
.-..||..|..-|+.- =| -+..|.+.-++. +.|.=..|.+|+--|-++...|..+|. .-+.
T Consensus 426 ~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~---~pp~~~dL~~ELqqLReERdRl~aeLq---lSa~ 499 (739)
T PF07111_consen 426 QALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPP---SPPSVTDLSLELQQLREERDRLDAELQ---LSAR 499 (739)
T ss_pred HHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCC---CCCchhhHHHHHHHHHHHHHHHHHHHH---HhHH
Confidence 3333444444444411 11 122233332322 455666889999999999999988887 2344
Q ss_pred hHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------HhHHhHHHHH---
Q 037185 355 ALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYD-------MLMAEKDEIN--- 424 (533)
Q Consensus 355 ~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e-------~L~~EK~~l~--- 424 (533)
++..++..... +.+. -...|...+.+|-.++......|..+-..+......+- .|+.|...-.
T Consensus 500 liqqeV~~ArE-qgea------E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y 572 (739)
T PF07111_consen 500 LIQQEVGRARE-QGEA------ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVY 572 (739)
T ss_pred HHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544433 2222 23566667777777777777777766655554443322 3333332211
Q ss_pred -HHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhHhH
Q 037185 425 -AKVNTLMAEARSRD-NHIGQIEEHSRKLHMEHAELIAASESS 465 (533)
Q Consensus 425 -~kv~~L~ad~~sRd-~~I~qme~hl~qL~~e~~~l~~~~~~~ 465 (533)
.-+..-++++.+|= +++..||.+||.-+-||++-+-.-.-+
T Consensus 573 ~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~ 615 (739)
T PF07111_consen 573 ERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQI 615 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233446777774 678999999999999998765444333
No 185
>PRK11281 hypothetical protein; Provisional
Probab=91.57 E-value=41 Score=41.18 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=42.2
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 373 LHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
|.++++..|+.|-..++.++.-.......-|+-.+-++.+.|.+..+...+...|..|-+-++.|
T Consensus 189 l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 189 LRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777666666666666666666666666666666666666666666655553
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.55 E-value=3.5 Score=37.94 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=8.8
Q ss_pred hHhhhhHHHHHHHHHHHHH
Q 037185 324 DKAQLQSEMFCLLEKQALL 342 (533)
Q Consensus 324 EKa~l~aEiskL~E~~~~L 342 (533)
+|..+..||.+|..++..+
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444433
No 187
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.55 E-value=6.8 Score=44.09 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk 199 (533)
...+| .+++-|+ +||.-.+++|+++.
T Consensus 154 S~~~~--~~~EaL~---ekLk~~~een~~lr 179 (596)
T KOG4360|consen 154 SAFQR--ELLEALQ---EKLKPLEEENTQLR 179 (596)
T ss_pred hhHHH--HHHHHHH---hhcCChHHHHHHHH
Confidence 34444 6777777 99999999999994
No 188
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=91.43 E-value=4.8 Score=35.18 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhh
Q 037185 382 QSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHI 441 (533)
Q Consensus 382 ~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I 441 (533)
+.|+..+.....+....+...-.++..+..++--|..||+..+.+.-.+|-.+.++++.+
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~ 61 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEM 61 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444443334444444444455555555555555555555544444444444444
No 189
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.37 E-value=21 Score=37.40 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=98.2
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~ 336 (533)
-++||.+-..+.++.-.....-+..+.+ +.++|.+|..+.+.+....+.-.++...-..-.+|| ++=|..-.
T Consensus 80 CRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKl-------K~l~eQye 152 (309)
T PF09728_consen 80 CRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKL-------KSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3445544444444433333333333333 567777777777777654444333332222221211 11111111
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
-.-.|++..++..+++.++.++++.+.......... ....+-+-|..+.. .|.++.+.-..|+..+..-
T Consensus 153 ~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~-------k~~~~~~~~l~~~~----~~~~~~~~E~~Lr~QL~~Y 221 (309)
T PF09728_consen 153 LREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKE-------KAKQEKEILLEEAA----QVQTLKETEKELREQLNLY 221 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 223355666666666666666666665553222221 11112221111111 5555555555555444333
Q ss_pred HH-------hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 417 MA-------EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV 489 (533)
Q Consensus 417 ~~-------EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~ 489 (533)
.. =...-|....+...+|...-.+|+.+|..-..+.-.+ +.....+-++-.....+.++++..+.
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~-------e~~n~~l~~m~eer~~~~~~~~~~~~- 293 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKW-------EKSNKALIEMAEERQKLEKELEKLKK- 293 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22 1122344445555555555555555555544444444 55555555555555555555544433
Q ss_pred HhhhhhHHHHHHHHHhhhh
Q 037185 490 ILDAAEEKREAIRQLCFSL 508 (533)
Q Consensus 490 i~e~aEeKREAIRQLCfsl 508 (533)
|.+-..-||=+|
T Consensus 294 -------k~~kLe~LcRaL 305 (309)
T PF09728_consen 294 -------KIEKLEKLCRAL 305 (309)
T ss_pred -------HHHHHHHHHHHH
Confidence 334444556444
No 190
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.34 E-value=28 Score=38.78 Aligned_cols=107 Identities=24% Similarity=0.269 Sum_probs=67.4
Q ss_pred HHHHHhHHhHHHHHHHHH------HHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHH----HHHHH
Q 037185 411 LKYDMLMAEKDEINAKVN------TLMAEAR----SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDE----LRFRV 476 (533)
Q Consensus 411 ~k~e~L~~EK~~l~~kv~------~L~ad~~----sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~e----L~~rv 476 (533)
-++|-|..||+-|..|++ ++++||. --.+.-..|-.|+.-|+-|.-.|-+.-..|.+.-.+ ++..-
T Consensus 208 KrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 208 KRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888876 5777776 334445567788888877766665555555444433 33333
Q ss_pred HHHHHHH-HHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185 477 KELENEV-DRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF 522 (533)
Q Consensus 477 ~eLE~Ev-e~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~ 522 (533)
...++|. ..||..|-+. ||||| ||=-|.--++.-+.+...|
T Consensus 288 ~~~reen~rlQrkL~~e~--erRea---lcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 288 VDHREENERLQRKLINEL--ERREA---LCRMLSESESSLEMDEERY 329 (552)
T ss_pred hhHHHHHHHHHHHHHHHH--HHHHH---HHHHhhhhhHHHHHHHHHH
Confidence 3333343 4577776554 78998 5777777777766665544
No 191
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.28 E-value=23 Score=37.72 Aligned_cols=140 Identities=20% Similarity=0.245 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH--------hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 037185 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAE--------EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKAL 356 (533)
Q Consensus 285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe--------eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~l 356 (533)
++..|+..+..|+..|.+....|+=|+..+++.. ..|+.|++.+=..+-++.+.+.+|+.-|.. +
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs-------~ 152 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS-------L 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3455555555555555555555655655555432 244566666666666666666655555555 5
Q ss_pred HHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185 357 EDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 357 EdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~ 435 (533)
-|+...+-+|.-.... .-.-|..|++.+--.-..+=-.|.+|--.---|+.++..+-.|++.+..-|...++-+.
T Consensus 153 lDEkeEl~~ERD~yk~----K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 153 LDEKEELVTERDAYKC----KAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444332221 33345555553222111122235555333344566788889999999999998888665
No 192
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.08 E-value=23 Score=37.50 Aligned_cols=73 Identities=25% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185 295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI 370 (533)
Q Consensus 295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~ 370 (533)
+|..+|.+-.+...--+..+.|.+..|.-==..|+++-- ...-.|+++-+++-..|..|-+.+=+++.||+|-
T Consensus 232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~LkEr~~qyEkEKaER 304 (305)
T PF14915_consen 232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESE---KQVLLLEERNKELINECNHLKERLYQYEKEKAER 304 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444433334444554444322223333211 1223388888888889999999999999999873
No 193
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.01 E-value=46 Score=40.75 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=45.0
Q ss_pred chhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 372 GLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 372 ~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
-+..+++..|+.|-..++..+...+......|+-.+-++.+.|.+..+...+..++..|-.-++.|
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777666666666667777777777766666666665555554
No 194
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.93 E-value=23 Score=37.17 Aligned_cols=130 Identities=21% Similarity=0.239 Sum_probs=66.5
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
+|+...|++.+++.++|+.--. .-.....+|+.+..+|++ |+..+|...-|.--.|..--++|
T Consensus 34 eEl~EFQegSrE~EaelesqL~----------q~etrnrdl~t~nqrl~~-------E~e~~Kek~e~q~~q~y~q~s~L 96 (333)
T KOG1853|consen 34 EELNEFQEGSREIEAELESQLD----------QLETRNRDLETRNQRLTT-------EQERNKEKQEDQRVQFYQQESQL 96 (333)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666555543222 222333344444444444 23333444444444444444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHH---HHHHHhhhhhHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQ---LKVEVCERDNRIEAL 402 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~---Lk~El~~~~~~Ie~L 402 (533)
.-+++.+-.-..+|...+++ ||.----|+..|.-...++..-++.|.++||. |-.|+++++--.+.+
T Consensus 97 eddlsqt~aikeql~kyiRe-------LEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv 166 (333)
T KOG1853|consen 97 EDDLSQTHAIKEQLRKYIRE-------LEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV 166 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555555566666665 44444444555554445555666777777774 666666665555444
No 195
>PRK10869 recombination and repair protein; Provisional
Probab=90.60 E-value=33 Score=38.41 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHH
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR-VKELENEVD 484 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r-v~eLE~Eve 484 (533)
|..|+.||-.--.+.-...+++..=+..+...+..+..|+.++.+++ .....+...++..|.+ +..|++.|.
T Consensus 308 l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~-------~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 308 QISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHH-------QQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665432222222222332223444555555555555555554 3334444556666655 566777764
Q ss_pred H
Q 037185 485 R 485 (533)
Q Consensus 485 ~ 485 (533)
.
T Consensus 381 ~ 381 (553)
T PRK10869 381 E 381 (553)
T ss_pred H
Confidence 4
No 196
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.57 E-value=43 Score=39.72 Aligned_cols=207 Identities=21% Similarity=0.242 Sum_probs=113.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 037185 168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFE 247 (533)
Q Consensus 168 ~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s 247 (533)
+.+..||...-.|++...+.++++.+ +.++ +....++.+...+|-.||+.+++|--+.+.+.++
T Consensus 633 ~~~~~~i~~~q~e~~klqeq~~Al~~--------i~~~--------~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~ 696 (1104)
T COG4913 633 DFYMIKIMRQQGEYIKLQEQANALAH--------IQAL--------NFASIDLPSAQRQIAELQARLERLTHTQSDIAIA 696 (1104)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH--------HHhc--------chhhcchhhHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 35667777777777766666666432 2222 3333445555666666665555555444444444
Q ss_pred HHHHHHHHHhhhhh----------HHHHHhhhhhHHHHhhhhHH--------------------------------HHHH
Q 037185 248 IERLMKELEGTHQL----------QGQLKLAQDDVTTLNAKLDY--------------------------------ERMQ 285 (533)
Q Consensus 248 ~~ei~kl~E~ik~L----------Q~~Le~~q~e~a~~k~Kle~--------------------------------e~~e 285 (533)
.......+-.-+-| ++.+++.++-+++.-+|+.+ +..+
T Consensus 697 ~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~ 776 (1104)
T COG4913 697 KAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDIERIE 776 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhhHHHHH
Confidence 33333222211111 23333333333333333221 1111
Q ss_pred -HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHH
Q 037185 286 -VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDA----RLKEWELQGKALEDKI 360 (533)
Q Consensus 286 -v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~----kL~e~e~~~~~lEdei 360 (533)
-..||.||.-..+.|.-+.++|= ..|+++-..+.-+-+-+.+|...+=|-...|.. .|-+ .+...
T Consensus 777 ~r~~LqkrIDa~na~Lrrl~~~Ii---g~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpe-------f~arF 846 (1104)
T COG4913 777 HRRQLQKRIDAVNARLRRLREEII---GRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPE-------FLARF 846 (1104)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHH-------HHHHH
Confidence 23567777766666666666654 479999999999999999999999998888764 3444 33333
Q ss_pred HHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 361 RQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 361 rqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
+.+-++..- .++-.=-..|..+-..-+.+|+.+|+++...
T Consensus 847 ~~llN~~S~---------~~v~q~~~~L~~er~~IeERIe~IN~SL~~v 886 (1104)
T COG4913 847 QELLNRSSD---------DGVTQLLSHLDHERALIEERIEAINDSLRRV 886 (1104)
T ss_pred HHHhhhccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333332111 0111111245566666677899999877654
No 197
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.51 E-value=11 Score=37.99 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 164 NETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 164 ~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk 199 (533)
.+...+|-.|+..++++.+.++..|..+++.+..|-
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Le 39 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELE 39 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344458889999999999999999999999988874
No 198
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.51 E-value=2.8 Score=43.93 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=54.2
Q ss_pred hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHhHHHHhhhhchhh
Q 037185 297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW-ELQGKALEDKIRQCETEKMEITGLHE 375 (533)
Q Consensus 297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~-e~~~~~lEdeirqleaEK~E~~~~~~ 375 (533)
...|.+||.||.+||..|+- ++| .| |++|--+|+++.--+|- .|+.
T Consensus 81 ~~~l~dRetEI~eLksQL~R------------------MrE----------DWIEEECHRVEAQLALKEAR-kEIk---- 127 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLAR------------------MRE----------DWIEEECHRVEAQLALKEAR-KEIK---- 127 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHH------------------HHH----------HHHHHHHHHHHHHHHHHHHH-HHHH----
Confidence 33467799999999888772 222 24 56777788877655552 2322
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 376 AQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 376 ~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
-|+.-|+-++.-|.++.+-|..-+.+|.--..|++.|
T Consensus 128 ----QLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 128 ----QLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred ----HHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHH
Confidence 4677777777777777777777766666555555543
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.37 E-value=2.7 Score=41.63 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 385 ie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
...+...+.++...|..|+..-+.|+.++..+.+|.+.++++++++..++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566677777777778888888888888877777776665544
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.28 E-value=5 Score=40.52 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK 420 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK 420 (533)
+..|++.|..|...+-.++-..|++|..|..-+..+.+|+
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555444444444444
No 201
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.24 E-value=20 Score=35.25 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=11.9
Q ss_pred HHHHHhhHHHHHHHHHHHhhhHHHH
Q 037185 171 LGRVIQYEDKLRVLNLSLQLSEEEV 195 (533)
Q Consensus 171 ~~RiielEdELreaneKL~~sEEe~ 195 (533)
..|+..+-.+|..+....+.+..++
T Consensus 19 ~~~L~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 19 NNRLLELRSELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555554444444444443
No 202
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.15 E-value=12 Score=35.36 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=9.6
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKI 312 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~ 312 (533)
++..+...+..+..+++++.++..
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~ 102 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQE 102 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 203
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.09 E-value=22 Score=35.46 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=10.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 037185 390 VEVCERDNRIEALNKIMDSLK 410 (533)
Q Consensus 390 ~El~~~~~~Ie~LNk~id~Lk 410 (533)
.|...++..+..|...|+.++
T Consensus 168 ~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 168 KEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544
No 204
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.00 E-value=12 Score=34.39 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
+.++...+..|+.+++.++.+++.+.++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~ 96 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKE 96 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 205
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.95 E-value=16 Score=34.37 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSL 409 (533)
Q Consensus 398 ~Ie~LNk~id~L 409 (533)
.+.++...+..+
T Consensus 103 ~~~~~~~~l~~~ 114 (191)
T PF04156_consen 103 RIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 206
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.93 E-value=28 Score=39.36 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHhHHHHhhhhchhhHh
Q 037185 302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK----EWELQGKALEDKIRQCETEKMEITGLHEAQ 377 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~----e~e~~~~~lEdeirqleaEK~E~~~~~~~q 377 (533)
....|.+.|-.-+.-+++ +|..+..++..+...+.+|++.|. .||.|.+.+-+.+-.+.. +
T Consensus 438 ~f~~Ec~aL~~rL~~aE~----ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNe-----------q 502 (518)
T PF10212_consen 438 HFYAECRALQKRLESAEK----EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNE-----------Q 502 (518)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------H
Confidence 333444444444444433 455666666666666666666665 333333333333333333 4
Q ss_pred hhhhhhHHHHHH
Q 037185 378 ERGMQSEINQLK 389 (533)
Q Consensus 378 ~~~L~gEie~Lk 389 (533)
...-.++|+.||
T Consensus 503 L~~Q~eeI~~LK 514 (518)
T PF10212_consen 503 LAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHh
Confidence 445556666666
No 207
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.89 E-value=37 Score=37.85 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.3
Q ss_pred hHHhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhh
Q 037185 160 TEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARL 198 (533)
Q Consensus 160 ~e~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rl 198 (533)
.++......-|.+|-..+-.||-..+.|-.+..++|.-+
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l 83 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPL 83 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchh
Confidence 345666677888888888899999999999888887765
No 208
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=89.71 E-value=39 Score=37.82 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc--hhHhhhhHHHHHH-----------HHHHHHHHHHHHH
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT--LDKAQLQSEMFCL-----------LEKQALLDARLKE 348 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s--~EKa~l~aEiskL-----------~E~~~~Le~kL~e 348 (533)
-+-++|||....|-+.=.....-|.+.|.+-+-|--|=- -=-..|-|||+-| -.+|.+|..+|+.
T Consensus 344 EqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrD 421 (488)
T PF06548_consen 344 EQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRD 421 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 457888998888877666667778888888776644321 0013455666555 4588888888884
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.46 E-value=7 Score=39.48 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=38.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
+++.+|...-+.++.-.+-|.+++.+.+.|..|+...-+.+...-+|+++-+.-|++.+..-++..-..
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555566666666667777766666666666666665555555554444443333
No 210
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.43 E-value=56 Score=39.27 Aligned_cols=163 Identities=13% Similarity=0.213 Sum_probs=83.2
Q ss_pred HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHH
Q 037185 262 QGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQAL 341 (533)
Q Consensus 262 Q~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~ 341 (533)
|.-++.+.+.+.+|.+++++-+.-..+|-.-.+.|..+..+......--.+.+-|+++ ++.+|---+.+++.+-..
T Consensus 409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~----~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE----ENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3335666677788888888888777777777777766666554444333333333222 233333333333333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHH
Q 037185 342 LDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKD 421 (533)
Q Consensus 342 Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~ 421 (533)
++.|.++ ..+.+..+..|++ .|.++++.|+..+.. +-+.=......++.+..+||
T Consensus 485 ~~~K~e~-------~~~~le~l~~El~-----------~l~~e~~~lq~~~~~-------~~qs~~~~~~~l~~~l~~KD 539 (980)
T KOG0980|consen 485 AETKTES-------QAKALESLRQELA-----------LLLIELEELQRTLSN-------LAQSHNNQLAQLEDLLKQKD 539 (980)
T ss_pred HHHhhHH-------HHHHHHHHHHHHH-----------HHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHhhH
Confidence 3333333 6666666666544 455566666554221 11122222223333334443
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 037185 422 EINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHA 456 (533)
Q Consensus 422 ~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~ 456 (533)
.+-+.+ ..+--.|.+.+.+.++-++||.+.+.
T Consensus 540 ~~~~~~---~~~~~e~~~~~~e~e~si~ql~l~~~ 571 (980)
T KOG0980|consen 540 RLAAEL---VAREEEREALRLEAERSINQLELDSS 571 (980)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhHHHhhcccc
Confidence 332221 22223344466777777788877763
No 211
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.24 E-value=26 Score=39.67 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=50.6
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHA 456 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~ 456 (533)
|-+-++.+|++...++..--.++..|--.|.+++-|+-++.-||.++.+ ++-.+.+++++ |...++.+.=.-|
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~----~Lq~~~da~~q---l~aE~~EleDkyA 285 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE----HLQAYKDAQRQ---LTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHhhHHH---HHHHHHHHHHHHH
Confidence 4445555666666666555566666666666666666666666644433 23344444443 3444555555566
Q ss_pred HHHHhhHhHHHHHHHHH
Q 037185 457 ELIAASESSRKLVDELR 473 (533)
Q Consensus 457 ~l~~~~~~~~~~v~eL~ 473 (533)
++++...++...+..||
T Consensus 286 E~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 286 ECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666655555555554
No 212
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.94 E-value=19 Score=33.15 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
.--.|.+++..+..+...+.+.+..|+..+..++.+
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666654444
No 213
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=49 Score=37.95 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=65.7
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc---hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFT---LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s---~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
-+|.|-.++-...++-.-|..|..+++|++.... -+=++|.|-+.++.-+...|+--|+.--+.|.-+|.++++.+.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655432 2335777778788777777877777777888889999988876
Q ss_pred HHhhh--hchhhHhhhhhhhHHHHHHHHH
Q 037185 366 EKMEI--TGLHEAQERGMQSEINQLKVEV 392 (533)
Q Consensus 366 EK~E~--~~~~~~q~~~L~gEie~Lk~El 392 (533)
---++ .-=.+.+.+.|-++++-.+.+.
T Consensus 409 ~~ddar~~pe~~d~i~~le~e~~~y~de~ 437 (654)
T KOG4809|consen 409 IEDDARMNPEFADQIKQLEKEASYYRDEC 437 (654)
T ss_pred hhHhhhcChhhHHHHHHHHHHHHHHHHHH
Confidence 33221 1112335556666666555544
No 214
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=7.4 Score=44.49 Aligned_cols=11 Identities=45% Similarity=0.489 Sum_probs=5.3
Q ss_pred HHHHHhhHHhh
Q 037185 310 LKIALSDAEEK 320 (533)
Q Consensus 310 LK~~lsDAeeK 320 (533)
|.++++.+.++
T Consensus 390 l~eal~~~~e~ 400 (652)
T COG2433 390 LAEALSKVKEE 400 (652)
T ss_pred HHHHHHHHHhh
Confidence 44555544444
No 215
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.58 E-value=26 Score=34.43 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIA 460 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~ 460 (533)
....+..|...+......|..|...|..|+.+++...+-++.+.+++.+..+-.+. +.+ --..
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~--~~~---------------~~~~ 159 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV--RRQ---------------LDSG 159 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---------------HhCC
Confidence 34455566666666677777777777777777777777777676666544332111 111 0012
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 461 ASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 461 ~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
.++++...+..+..||..+|-+.+-.
T Consensus 160 ~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 160 RSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455666667777777777665543
No 216
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.54 E-value=0.64 Score=49.12 Aligned_cols=70 Identities=11% Similarity=0.252 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRK 450 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~q 450 (533)
|.+.|..|...+......|..|...+.++..-+..|....+.+.-.|.||+.+|.+--=.|..|+..+..
T Consensus 82 LsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 82 LSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 4445555555555556666666666666666666666666777777777777777666555444444433
No 217
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.32 E-value=39 Score=36.02 Aligned_cols=200 Identities=20% Similarity=0.246 Sum_probs=100.4
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-hhhHHHHHHHHHHhhHHhhhch----hHh
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-DRNNEVAELKIALSDAEEKFTL----DKA 326 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-~~d~EIr~LK~~lsDAeeK~s~----EKa 326 (533)
..|+.+++.|..+|+.....+..+...+..-+...+.+|.+.-.-+.-++ .+-..|..|+..-.+.--+.-. -=-
T Consensus 30 ~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn 109 (310)
T PF09755_consen 30 ESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTN 109 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444444444444444444444443333333 2333344443332222111111 113
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKE-WELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e-~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~ 405 (533)
.|+.-+.+|..+...|+..|.. -+..+.-|--+|..+++++ ..++.+.++|..|+.+.+.-++.=.-.
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~-----------~~~q~~le~Lr~EKVdlEn~LE~EQE~ 178 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEK-----------SAKQEELERLRREKVDLENTLEQEQEA 178 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5666777777777777777763 3344444555555554433 234556667777777766666543322
Q ss_pred -HHHHHHHHHHhHHhHHHHHHHHHHHHHH-hhhh--------hhhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 406 -MDSLKLKYDMLMAEKDEINAKVNTLMAE-ARSR--------DNHIGQIEEHSRKLHMEHAELIAAS 462 (533)
Q Consensus 406 -id~Lk~k~e~L~~EK~~l~~kv~~L~ad-~~sR--------d~~I~qme~hl~qL~~e~~~l~~~~ 462 (533)
+-.|--+.+-|.+||..+..++..=..+ ..-| ......+..|+..|+-|-+.|-...
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2234445677777888888777542221 1112 2233456666666665554444433
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.02 E-value=20 Score=40.03 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 405 ~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
.+..++..++.+..|++.+......+.+....-..++.|+...+..+.-+--.+--....+.+-..-.+.+++++++.-.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544444444444444444444444322211111112222222333444444444433
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhHhh
Q 037185 485 RQRMVILDAAEEKREAIRQLCFSLEHY 511 (533)
Q Consensus 485 ~Q~~~i~e~aEeKREAIRQLCfslehy 511 (533)
+++..--+.-.+=-|-+|.|=|-||..
T Consensus 428 ~~~~s~d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHheehhhh
Confidence 333322222223345688898988754
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.87 E-value=41 Score=39.17 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELK 311 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK 311 (533)
.++.|++.++...+.--.++.+|+
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~ 585 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQ 585 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444433
No 220
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.84 E-value=56 Score=37.33 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 037185 453 MEHAELIAASESSRKLVDELRFRVKELENE 482 (533)
Q Consensus 453 ~e~~~l~~~~~~~~~~v~eL~~rv~eLE~E 482 (533)
.+...|--+.+.+.+...-|-.|..+..-.
T Consensus 376 ~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 376 VDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455566666777776666666544
No 221
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.67 E-value=51 Score=36.69 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037185 394 ERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL 458 (533)
Q Consensus 394 ~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l 458 (533)
.....++.|.+.++.++.++..+..+.+....+++.-++ +.+..+|..|-|.++.+
T Consensus 343 ~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~---------~~v~~~l~~L~m~~~~f 398 (563)
T TIGR00634 343 DSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA---------KRVEQELKALAMEKAEF 398 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhCCCCCcEE
Confidence 344466666666666666666665555555444332222 23456777777776554
No 222
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.62 E-value=38 Score=35.15 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHH----HHHHHHHHHHHHHhhc
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYER----MQVLKFQERIAKVETN 299 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~----~ev~kLqeri~~lkt~ 299 (533)
.++..|+.....|.+.+.++++++..+.+=-+.|- .+++.|..-|..++++
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777888888888888777766554 4555555555555543
No 223
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.47 E-value=78 Score=38.62 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEA-LNKIMDSLKLKYDMLMAEKDEINAKVNTLMA 432 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~-LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~a 432 (533)
.++..++.++.++...-..|.. ....+..+...++..+.+-+.+-..++.-+.
T Consensus 636 ~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~ 689 (1041)
T KOG0243|consen 636 SLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS 689 (1041)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666655554444444 4456666666666666666666666554444
No 224
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.33 E-value=71 Score=37.97 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhch
Q 037185 224 RRQVFELQNYVRELETRLSE---SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL 300 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~---l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~L 300 (533)
+.++..|--|++|-|.+... .+++ =|+..|+--+..||.+|....+....+.+|-+.-.+ .|...+..-
T Consensus 400 rRrLrilnqqlreqe~~~k~~~~~~~n-~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk-------~~e~q~~En 471 (861)
T PF15254_consen 400 RRRLRILNQQLREQEKAEKTSGSQDCN-LELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLK-------VIENQKEEN 471 (861)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCcccc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH-------HHHHHHHHH
Confidence 34455554556665554422 2222 357778888888888888777766666655432222 222222222
Q ss_pred hhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185 301 SDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI 370 (533)
Q Consensus 301 s~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~ 370 (533)
-.+-..+.+=.+.+-..-+.|..|-+.++-|+...+-...++.-+|+..|-+-..|---+||=.||..-+
T Consensus 472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 2222223333444455556677777788888888888888888888887777777777777766644433
No 225
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.08 E-value=39 Score=36.64 Aligned_cols=76 Identities=17% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185 332 MFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKL 411 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~ 411 (533)
-.+|.....+..+=+-.--.+.+-+|.-++++..|+.-.+. |...++.++ .+++.+-..||+.++....
T Consensus 108 nqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql----qL~~l~~e~-------~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 108 NQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL----QLDALQQEC-------GEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHH-------hHhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444466666666666665544 333333333 3334445555555555544
Q ss_pred HHHHhHH
Q 037185 412 KYDMLMA 418 (533)
Q Consensus 412 k~e~L~~ 418 (533)
-.-.|..
T Consensus 177 yqq~L~~ 183 (401)
T PF06785_consen 177 YQQELND 183 (401)
T ss_pred HHHHHHH
Confidence 3333333
No 226
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.87 E-value=56 Score=36.31 Aligned_cols=142 Identities=20% Similarity=0.302 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHH------
Q 037185 277 AKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWE------ 350 (533)
Q Consensus 277 ~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e------ 350 (533)
.++++.+=.|.-|++-+.+|+++.-+.=.....+...+.|.-+| +|+. |-.|.+....|++++....
T Consensus 216 k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k---~k~~----~~~l~~K~~iL~ekv~~~qti~~e~ 288 (446)
T KOG4438|consen 216 KILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQK---EKSA----MVELQEKAKILEEKVTNLQTIEKEL 288 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 34555566666777777767766654444444444444444444 2222 2233333333333332110
Q ss_pred ------------------------hhhhhHHHH--HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHH
Q 037185 351 ------------------------LQGKALEDK--IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNK 404 (533)
Q Consensus 351 ------------------------~~~~~lEde--irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk 404 (533)
.+..-+|++ +.+++.+++-+.+-|--|...++-+-+...-+...+ .-+.+-+
T Consensus 289 ~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r--~~E~v~~ 366 (446)
T KOG4438|consen 289 KALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENR--KTESVKA 366 (446)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 011112222 234444444444434444444444444444333222 2266666
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHH
Q 037185 405 IMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 405 ~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
-+|..+.++...+.+.+...-+|
T Consensus 367 ~md~~~~~~n~V~~kr~a~~~ki 389 (446)
T KOG4438|consen 367 MMDDNIEKYNVVRQKRNAKVKKI 389 (446)
T ss_pred HHHHHHHHhcccchhhccHHHHH
Confidence 67777777766666666655555
No 227
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.76 E-value=15 Score=37.20 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=11.6
Q ss_pred HhhhhhHHHHHHHHcCCC
Q 037185 509 EHYRSGYQELRQAFLGYK 526 (533)
Q Consensus 509 ehyr~~y~~L~~~~~GhK 526 (533)
-+=|+.|+.||++=+|++
T Consensus 219 ~~g~~ky~tl~~i~~g~t 236 (246)
T PF00769_consen 219 RAGRDKYKTLRQIRQGNT 236 (246)
T ss_dssp HTT--HHHHHHHHT-S-H
T ss_pred HhchhHHHHHHHHhcCCH
Confidence 456899999999999973
No 228
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.62 E-value=8.4 Score=40.42 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhh
Q 037185 361 RQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNH 440 (533)
Q Consensus 361 rqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~ 440 (533)
.||.+||.-+-= |--.|+..++-|-+.++...+.+...++.+..+|..++.|..|.+. |...+..||.-
T Consensus 101 aQLDNek~~l~y----qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~-------Lre~L~~rdel 169 (302)
T PF09738_consen 101 AQLDNEKSALMY----QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE-------LREQLKQRDEL 169 (302)
T ss_pred hhhchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 455666664431 2222344444444444444444444445555555555555555544 44455777766
Q ss_pred h
Q 037185 441 I 441 (533)
Q Consensus 441 I 441 (533)
|
T Consensus 170 i 170 (302)
T PF09738_consen 170 I 170 (302)
T ss_pred H
Confidence 6
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.07 E-value=6.3 Score=36.94 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
++..|..++..|..++.++...++.++.+++.+.+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666644444446666666655
No 230
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.85 E-value=9.6 Score=37.43 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=16.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 391 EVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 391 El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
++...+.+++++|+.+.+++.+....
T Consensus 160 ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444447777777887777776543
No 231
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.81 E-value=7.8 Score=44.32 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=68.2
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 270 DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 270 ~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
-++..+.+.+.+-...|.+|++.+..|+..+...+.+|..|+..+..+..+.- .|....-||..+..++..|+.+|.+-
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666777777777777777788888888888888877776 67777888999999999999999885
Q ss_pred HhhhhhHHHHHHHhH
Q 037185 350 ELQGKALEDKIRQCE 364 (533)
Q Consensus 350 e~~~~~lEdeirqle 364 (533)
......|+.++.++.
T Consensus 494 ~~~ve~L~~~l~~l~ 508 (652)
T COG2433 494 KKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 232
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=85.43 E-value=4 Score=40.35 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
.+|+..|-+++..|.+++.++--.|+++|++||.|...-. - -+||.+|..|+.+.....++|..+
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt--~-------eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT--T-------EEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--h-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999999999999999999987221 1 257777887777776666666554
No 233
>PF15294 Leu_zip: Leucine zipper
Probab=85.00 E-value=54 Score=34.43 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=62.9
Q ss_pred hhchhHhh-----hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh
Q 037185 320 KFTLDKAQ-----LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE 394 (533)
Q Consensus 320 K~s~EKa~-----l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~ 394 (533)
|+-|+.-. +..||.+|+++|..|.++|..++.+|-..=++...+++.-.++.. .+|.+. -+..+..
T Consensus 117 KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--------~~~~~~-~k~~~~~ 187 (278)
T PF15294_consen 117 KLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--------EQGDQK-GKKDLSF 187 (278)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh-ccccccc
Confidence 45566656 899999999999999999999888888887777777775444431 222222 2234456
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 037185 395 RDNRIEALNKIMDSLKLKYDM 415 (533)
Q Consensus 395 ~~~~Ie~LNk~id~Lk~k~e~ 415 (533)
....|..|...++.+|.+++-
T Consensus 188 ~~q~l~dLE~k~a~lK~e~ek 208 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSELEK 208 (278)
T ss_pred cccchhhHHHHHHHHHHHHHH
Confidence 777888888888888877653
No 234
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=15 Score=34.09 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhH-hhhhhhhHHH---HHHHHHhhhhhHHHHHH
Q 037185 328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEA-QERGMQSEIN---QLKVEVCERDNRIEALN 403 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~-q~~~L~gEie---~Lk~El~~~~~~Ie~LN 403 (533)
+-.++..+...-..|..+|..+-.++.-+|.+++.++....|.+.|-+- .--...|.+= ...+=+.+.+.+++.|+
T Consensus 4 lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le 83 (119)
T COG1382 4 LPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLE 83 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHH
Confidence 3456666677777788888888888888999999998888888775432 2222233221 01111223344455555
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAE 433 (533)
Q Consensus 404 k~id~Lk~k~e~L~~EK~~l~~kv~~L~ad 433 (533)
..|..|...-+.+.++...+.+.|...+.+
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555555555555566666555443
No 235
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.58 E-value=78 Score=35.92 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=38.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI 370 (533)
Q Consensus 325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~ 370 (533)
|..-...|..|.......+.|..-+..+|+.|-..+...+.+|.-+
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l 460 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESL 460 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788999999999999999999999999988888877766543
No 236
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.39 E-value=26 Score=35.14 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037185 384 EINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL 458 (533)
Q Consensus 384 Eie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l 458 (533)
||=.|+..+-+........+..+..|+..+..=..|.....+.+...+.++.--.++++.++..+..|+-..+.+
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 333344444444444444444444443333333334444445555555555555556666666666666555554
No 237
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.88 E-value=77 Score=35.31 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHHH-HHHHHHHHH
Q 037185 463 ESSRKLVDELRFR-VKELENEVD 484 (533)
Q Consensus 463 ~~~~~~v~eL~~r-v~eLE~Eve 484 (533)
..+...++..|.+ +..|++.|.
T Consensus 363 ~~~a~~Ls~~R~~~a~~l~~~v~ 385 (563)
T TIGR00634 363 DKAAVALSLIRRKAAERLAKRVE 385 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555433 344555443
No 238
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.54 E-value=17 Score=36.11 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
..+..|++.++.++.+++.+..+-+...+. +-..+..++..|.+++....+|.-+.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~---l~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAE---MQQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655543322222 22233445666655555555554333
No 239
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.54 E-value=41 Score=31.82 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=25.6
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 037185 324 DKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIR 361 (533)
Q Consensus 324 EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeir 361 (533)
..-.|..+.-+..+....|+..++.|+..+..++-.++
T Consensus 139 ~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 139 GVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666777777777777777777777766554
No 240
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.34 E-value=26 Score=32.18 Aligned_cols=60 Identities=22% Similarity=0.443 Sum_probs=40.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHh---hhhHHHHHHHHHHHHHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKA---QLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa---~l~aEiskL~E~~~~Le~kL~e 348 (533)
|-.+...|.++-..+.+.|.+|...++|+...+-.+|- .|.+..++-.-..+.|+-+|.+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 55566667777777888888888888888877776664 4455556666666666655544
No 241
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.23 E-value=25 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHH
Q 037185 422 EINAKVNTLMAEARSRDNHIGQIE 445 (533)
Q Consensus 422 ~l~~kv~~L~ad~~sRd~~I~qme 445 (533)
.++.-|..|++|+...|-+|+=|+
T Consensus 332 ~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhhheeh
Confidence 345566777777777777775443
No 242
>PF13166 AAA_13: AAA domain
Probab=83.20 E-value=85 Score=35.27 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
.++.+|..|...+...+.-+..+|+.|..+
T Consensus 442 ~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 442 KIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344455556665555566666777666666
No 243
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.08 E-value=12 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~ 435 (533)
++..|+..|..|+.++..|..+...+.+.+.+|.+..+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444444444555555555555555555555544443
No 244
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=82.60 E-value=41 Score=36.08 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=44.4
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh---hhhHHHHHHHHHHhhHHhhhchhHhhhhHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS---DRNNEVAELKIALSDAEEKFTLDKAQLQSEM 332 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls---~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEi 332 (533)
-++.+|--|++-.|++---+...--..+.||-||--+|..|+..+= ..-+-||++...++
T Consensus 7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~----------------- 69 (351)
T PF07058_consen 7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQ----------------- 69 (351)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-----------------
Confidence 3344444444444443222222222234788899888888876543 45566776655444
Q ss_pred HHHHHHHHHHHHHHHH
Q 037185 333 FCLLEKQALLDARLKE 348 (533)
Q Consensus 333 skL~E~~~~Le~kL~e 348 (533)
.|.|+..-|+..|..
T Consensus 70 -elneEkrtLeRELAR 84 (351)
T PF07058_consen 70 -ELNEEKRTLERELAR 84 (351)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 788888888888873
No 245
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.42 E-value=8.5 Score=31.86 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=30.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
|-.++.|+.+....+..++.+|.+-+.+-+.|+.+|..+..
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999999999955555555555555544
No 246
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=82.35 E-value=59 Score=32.86 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
.++.++-..|..|+.+|+.+|+-.+++..||
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL 34 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKL 34 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666665
No 247
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.35 E-value=21 Score=41.89 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHH-----------HHHHHHHHHHHhhhhhhhhh---hHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDE-----------INAKVNTLMAEARSRDNHIG---QIE 445 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~-----------l~~kv~~L~ad~~sRd~~I~---qme 445 (533)
.|...|++|+.|++. ++..-- +---|+.|+++|+.|.+. +..++.+|+.+++-|=...- .+-
T Consensus 459 ~L~e~IeKLk~E~d~---e~S~A~-~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk 534 (762)
T PLN03229 459 ALNEMIEKLKKEIDL---EYTEAV-IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLK 534 (762)
T ss_pred HHHHHHHHHHHHHHH---HHHHhh-hhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence 456666666665521 222221 223578899999988777 66689999999887754321 122
Q ss_pred HHHHHHHHHH-HH-HHHhhHhHHHHHHHHHHHHHH
Q 037185 446 EHSRKLHMEH-AE-LIAASESSRKLVDELRFRVKE 478 (533)
Q Consensus 446 ~hl~qL~~e~-~~-l~~~~~~~~~~v~eL~~rv~e 478 (533)
..|.-|..++ |+ |+.++..+..+=.||+.++.+
T Consensus 535 ~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e 569 (762)
T PLN03229 535 YKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKE 569 (762)
T ss_pred HHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHH
Confidence 2333343333 22 333344455555566666665
No 248
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.10 E-value=43 Score=35.37 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037185 413 YDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAA-SESSRKLVDELRFRVKELENEVDRQRMVIL 491 (533)
Q Consensus 413 ~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~-~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~ 491 (533)
+..|..+...+..++..|..-.+...-.|..+...+..|.-.....+.. ...+.+.+..++.+...|+..++.++..+.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888999999999999988887554333322 233445566677778888888777766665
Q ss_pred hhhhHHHHHHHHHhhhhHhhhhhHHHHHH
Q 037185 492 DAAEEKREAIRQLCFSLEHYRSGYQELRQ 520 (533)
Q Consensus 492 e~aEeKREAIRQLCfslehyr~~y~~L~~ 520 (533)
.....-++ .+.|=--++.-|.-|..|..
T Consensus 336 ~l~~~~~~-~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 336 ELNRQRDE-MSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 54433322 33444444555555555544
No 249
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.97 E-value=1.1e+02 Score=35.46 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=62.0
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----------hhhHHHHHHHHH---HhhHHhhhchhHhhhhHHHHH
Q 037185 268 AQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----------DRNNEVAELKIA---LSDAEEKFTLDKAQLQSEMFC 334 (533)
Q Consensus 268 ~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----------~~d~EIr~LK~~---lsDAeeK~s~EKa~l~aEisk 334 (533)
....+..|+++++.++-...-+-+++.++...|. +-+..+.+.+.. +++...-+..++.....+...
T Consensus 339 ~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~ 418 (607)
T KOG0240|consen 339 LELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDI 418 (607)
T ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHH
Confidence 3445678899988888666666666666666554 222222222222 123444444455446788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 335 L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
|.+++.+|..+|-....+.........+++.++..-.+
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee 456 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEE 456 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888887555555555555555554444333
No 250
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.79 E-value=56 Score=32.21 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhh
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHI 441 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I 441 (533)
.|..|.+.|-.|+.....+..+|...+..|..|.+++..=+..|
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555544444444
No 251
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.34 E-value=35 Score=33.31 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh--hhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE--KFTLDKAQLQSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee--K~s~EKa~l~aEiskL~E~~~~Le~kL~ 347 (533)
.....++.++..|...+.....+|.+|+..+.++.. .-+.|+..+-.++..|..++..|...|.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555432 1123344444444444444444433333
No 252
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=80.95 E-value=14 Score=42.38 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185 451 LHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF 522 (533)
Q Consensus 451 L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~ 522 (533)
++.....+-...+.....+.++..+..+++++.+.-+..+......=++.|+.+.--+.-.+..|+-+....
T Consensus 213 ~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 284 (759)
T PF01496_consen 213 FGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFA 284 (759)
T ss_dssp TT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444566778889999999999998887777776555545555555555555556666665443
No 253
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.77 E-value=31 Score=33.71 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
......+..+..|+.+++.+...++.++.+++..+..-..=.+|-..+.. +..+..++..|+..+. .....-|+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~-l~~l~~~~~~l~~el~-~~~~~Dp~---- 135 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEE-LEELKKELKELKKELE-KYSENDPE---- 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCHH----
Confidence 44444455555555555555555555555555554222222444443333 5555556666666665 23333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ 362 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq 362 (533)
.|.++.+....+-...-.|--++-.+..=++.
T Consensus 136 --~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 136 --KIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34456666666666666666555555555444
No 254
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.54 E-value=18 Score=30.70 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ 362 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq 362 (533)
+|+.+|..+=..++-+.-+|.+||..-. .+..+...|.+++..|...-..|..+.+.+=.++.+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~-----------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNN-----------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444444444455556666666544 444666677777777777777777777666555543
No 255
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.52 E-value=1.4e+02 Score=36.05 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhcchH--HHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhH-------HHHHHHHHHHHHHHH
Q 037185 225 RQVFELQNYVRELETRLSESNF--EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLD-------YERMQVLKFQERIAK 295 (533)
Q Consensus 225 ~ei~~LQ~~v~ELE~~~~~l~~--s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle-------~e~~ev~kLqeri~~ 295 (533)
.++..|+.++..|+...-.++. ...+|-.+...+..++..+.....+-..-...+. ....+..+|+.++..
T Consensus 330 ~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~ 409 (913)
T KOG0244|consen 330 FEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDS 409 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHH
Confidence 3455555666666666555542 2355555666666666666655554444444332 223566777777776
Q ss_pred Hhhchh
Q 037185 296 VETNLS 301 (533)
Q Consensus 296 lkt~Ls 301 (533)
+..-+.
T Consensus 410 ~~~~~~ 415 (913)
T KOG0244|consen 410 CMNLLS 415 (913)
T ss_pred HHHHHH
Confidence 665554
No 256
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.47 E-value=45 Score=33.23 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHHHHHHHhhchhhhhHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELK 311 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK 311 (533)
.|.+|..+..+-..+..+|+.|+
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~ 62 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLE 62 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333444333
No 257
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.09 E-value=1.5e+02 Score=35.93 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=9.4
Q ss_pred HHHHHHc-CCCCCCc
Q 037185 517 ELRQAFL-GYKRPAV 530 (533)
Q Consensus 517 ~L~~~~~-GhKR~~V 530 (533)
.|+..|. |.-||+-
T Consensus 495 ~Lr~~L~~GePCPVC 509 (1047)
T PRK10246 495 AQRAQLQAGQPCPLC 509 (1047)
T ss_pred HHHHhCCCCCCcCCC
Confidence 3677776 7777763
No 258
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=80.00 E-value=72 Score=32.31 Aligned_cols=140 Identities=20% Similarity=0.273 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhh-hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 037185 336 LEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQ-SEINQLKVEVCERDNRIEALNKIMDSLKLKYD 414 (533)
Q Consensus 336 ~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~-gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e 414 (533)
.+...+|+-+|+-+ ||.+++-+-+......- +....- +.+..|+..+-+++..|.+|.-++.....||
T Consensus 19 ~ekRE~lE~rLR~~------lE~EL~~lr~qq~~~~~----~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY- 87 (205)
T PF12240_consen 19 CEKREQLERRLRTR------LERELESLRAQQRQGNS----SGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY- 87 (205)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHhhccCCC----CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46677888999875 88888777775554432 111111 3577899999999999999999999998887
Q ss_pred HhHHhHHHHH-HHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 415 MLMAEKDEIN-AKVNTLMAEARSRDN-HIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 415 ~L~~EK~~l~-~kv~~L~ad~~sRd~-~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
. |.+.+. ..++.--+-..-||- =|+.+..|-..=-+ +..-+.-.+..-+-+|..|++.|+.++-....+|.-
T Consensus 88 L---EEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~---r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkV 161 (205)
T PF12240_consen 88 L---EESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL---REEEELHMANRKCQEMENRIKALHAQIAEKDAMIKV 161 (205)
T ss_pred H---HHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc---cchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 111111111112444 23333322210000 011222344566788889999999998887777753
No 259
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.40 E-value=44 Score=33.31 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKY 413 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~ 413 (533)
.|...++.++.|+.++
T Consensus 78 ~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 78 QVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 260
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.37 E-value=1.6e+02 Score=36.04 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhhhhHhhhhhHH
Q 037185 494 AEEKREAIRQLCFSLEHYRSGYQ 516 (533)
Q Consensus 494 aEeKREAIRQLCfslehyr~~y~ 516 (533)
+-+=+.|-+-.| |+--||+.++
T Consensus 426 ~~~~~d~~dAy~-wlrenr~~FK 447 (1072)
T KOG0979|consen 426 RQGSSDAYDAYQ-WLRENRSEFK 447 (1072)
T ss_pred ccCchHHHHHHH-HHHHCHHHhc
Confidence 333344444444 5666666543
No 261
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.25 E-value=64 Score=31.26 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=24.9
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMA 418 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~ 418 (533)
+...++..+..+...+......|..|...|..++.+.++|..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555666666666666666666555
No 262
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.79 E-value=1.9e+02 Score=36.41 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHhhHHHHHHHHH-HHhhhHHH
Q 037185 169 ELLGRVIQYEDKLRVLNL-SLQLSEEE 194 (533)
Q Consensus 169 ~L~~RiielEdELreane-KL~~sEEe 194 (533)
+|..+..+.|.=|+.+.+ |++++|.+
T Consensus 1423 ~l~~~~ae~eq~~~~v~ea~~~aseA~ 1449 (1758)
T KOG0994|consen 1423 QLRSKLAEAEQTLSMVREAKLSASEAQ 1449 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566667777776655544 45555544
No 263
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=78.53 E-value=37 Score=28.19 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH-----HHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 037185 401 ALNKIMDSLKLKYDMLMAEKDEINAKVNTLM-----AEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR 475 (533)
Q Consensus 401 ~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~-----ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r 475 (533)
...+.+.....+++.|...++.+...+.... +++......|..++..+.++.-+...+-...+.++..+.+-..+
T Consensus 9 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 9 EAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666666666 77778888888888888888877777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 037185 476 VKELENEVDRQRMVIL 491 (533)
Q Consensus 476 v~eLE~Eve~Q~~~i~ 491 (533)
++-++.-.++.+....
T Consensus 89 ~k~~e~L~e~~~~~~~ 104 (123)
T PF02050_consen 89 RKKLEKLKERRREEYQ 104 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888777766543
No 264
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.46 E-value=6.5 Score=32.53 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=37.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
+.+||..|++.++..++-|.+|-.+|. .-+.+|.+|......|..+|++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~-----------~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVT-----------EQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999888887 44556777888777777777773
No 265
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=78.40 E-value=64 Score=30.81 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e 348 (533)
+.+.++..+|..+...|..+|++
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 266
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.27 E-value=1.2e+02 Score=34.02 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHH
Q 037185 341 LLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKV 390 (533)
Q Consensus 341 ~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~ 390 (533)
+|+.-|+=+..+...++.++.+++.+-... +-.|+.+|..|..
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~-------~~~L~~qi~~L~~ 179 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFGKEAQE-------RHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 445555554445555666666666644332 2355555555443
No 267
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.26 E-value=1.3e+02 Score=34.40 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhh
Q 037185 291 ERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQ 327 (533)
Q Consensus 291 eri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~ 327 (533)
.+.........-++.++.++++.+..|+.++.-=|..
T Consensus 187 ~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 187 AKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445678888888999998888886665554
No 268
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.22 E-value=1e+02 Score=35.59 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=90.6
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH-------HHhhHHhhhchhHhhhhH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI-------ALSDAEEKFTLDKAQLQS 330 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~-------~lsDAeeK~s~EKa~l~a 330 (533)
++.||...+.--.+++-++.+-++=..-..+|.+|+...+.+-+.+....++|.+ .+++|+.-|..|=--+-.
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~ 669 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPD 669 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHH
Confidence 4444444444444555555555544455678888888888888888888888766 478899888777655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH-HHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCET-EKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea-EK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~ 405 (533)
++..|.-.+.-+..+... ..-.+.++.+ =+..+..+-++|...+|.-..+|..++.+.-+.+..+|+.
T Consensus 670 ~~~~L~~~iET~~~~~~K-------Q~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~ 738 (741)
T KOG4460|consen 670 QLRHLGNAIETVTMKKDK-------QQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNH 738 (741)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555565555555555554 2222222222 2233344667889999999999999888877777776643
No 269
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.19 E-value=75 Score=36.62 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=63.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhh
Q 037185 435 RSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSG 514 (533)
Q Consensus 435 ~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~ 514 (533)
..+-.++.+++.++.+|....+++.+....-|-.|-.|+.+...|+.++...+..+......-+ .+++|==-.+.+|.-
T Consensus 307 ~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~-~~~~L~R~~~~~~~l 385 (726)
T PRK09841 307 KAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQ-EVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHH
Confidence 3344456777888888888888888877888888888888888888888887777776655444 355566667777777
Q ss_pred HHHHHHH
Q 037185 515 YQELRQA 521 (533)
Q Consensus 515 y~~L~~~ 521 (533)
|..|.+-
T Consensus 386 Y~~lL~r 392 (726)
T PRK09841 386 YLQLLNR 392 (726)
T ss_pred HHHHHHH
Confidence 7776543
No 270
>PRK10869 recombination and repair protein; Provisional
Probab=78.18 E-value=1.2e+02 Score=34.01 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=34.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 037185 392 VCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAE 457 (533)
Q Consensus 392 l~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~ 457 (533)
+...+..++.|.+.++.++.++..+....+...-+.+.-++ +.+..||..|-|.+|.
T Consensus 336 L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~---------~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 336 LDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELA---------QLITESMHELSMPHGK 392 (553)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHcCCCCcE
Confidence 34556667777777777777766665555444444322222 2456777888888873
No 271
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.86 E-value=67 Score=36.03 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 429 TLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 429 ~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
++.+..++.|.+|..++++|+.|-
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 445556788888888888888874
No 272
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.67 E-value=71 Score=32.65 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHhhhhhHHHHHhhhh-hHHHHhhhhHHHH-HHHHHHH
Q 037185 253 KELEGTHQLQGQLKLAQD-DVTTLNAKLDYER-MQVLKFQ 290 (533)
Q Consensus 253 kl~E~ik~LQ~~Le~~q~-e~a~~k~Kle~e~-~ev~kLq 290 (533)
+..|++..-..-.+.++. ..++-+.||+.+. +|+-|||
T Consensus 16 kv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQ 55 (233)
T PF04065_consen 16 KVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQ 55 (233)
T ss_pred HHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 344555555555555544 4456677777764 6677776
No 273
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.25 E-value=1.4e+02 Score=33.95 Aligned_cols=136 Identities=14% Similarity=0.241 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhH---HhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhh
Q 037185 305 NEVAELKIALSDA---EEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGM 381 (533)
Q Consensus 305 ~EIr~LK~~lsDA---eeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L 381 (533)
+=|++||..+-+. -=++-+||..+..=+..|++.-+.....|.+-...+..|.-+++.+.+.-.-+++-|-+--+.-
T Consensus 362 DiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 362 DIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3456666555443 3367788888888888888888888888888777777777777777665554444222211111
Q ss_pred hhHHH-H--HHHHHhhhhhHHHHHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhh
Q 037185 382 QSEIN-Q--LKVEVCERDNRIEALNKIMDSL----KLKYDMLMAEKDEINAKVNTLMAEARSRDNH 440 (533)
Q Consensus 382 ~gEie-~--Lk~El~~~~~~Ie~LNk~id~L----k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~ 440 (533)
..-++ + +---+..++.+|+.|.+-=-.| .+-++.|..||..+.-++-+|-+++--|...
T Consensus 442 nksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 442 NKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 1 2223456667777776433233 2457889999999998888888888777654
No 274
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.12 E-value=1.6e+02 Score=34.72 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037185 463 ESSRKLVDELRFRVKELENEVDRQRMVIL 491 (533)
Q Consensus 463 ~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~ 491 (533)
+.....+..|.+.....+..+..||..+-
T Consensus 471 e~le~~~kdL~s~L~~~~q~l~~qr~e~~ 499 (716)
T KOG4593|consen 471 EKLEHELKDLQSQLSSREQSLLFQREESE 499 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555666666666777776654
No 275
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.08 E-value=88 Score=36.64 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHH
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
.-.+|||+++|.-+-+-+.-.|.=
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsv 129 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSV 129 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHH
Confidence 346899999988855555444443
No 276
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.81 E-value=1.2e+02 Score=35.61 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=63.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh----hchhhHhhhhhhhHHHHHHHHHhhhhhHHH
Q 037185 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI----TGLHEAQERGMQSEINQLKVEVCERDNRIE 400 (533)
Q Consensus 325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~----~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie 400 (533)
|=.|.+||+.|.=..+-||..=.+.|...+..|+.+.++..-|-.+ ..-|++...--+|+...|++...++..+|.
T Consensus 176 KlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~ 255 (861)
T KOG1899|consen 176 KLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEM 255 (861)
T ss_pred HhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHH
Confidence 4455666666665555555555555555555555555554322111 111333334445666777777777777766
Q ss_pred HHHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185 401 ALNKIMD-SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451 (533)
Q Consensus 401 ~LNk~id-~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL 451 (533)
.|...+- .+...-+....-...+++-+.+||.--...|..|..+-..+++.
T Consensus 256 rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 256 RLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 6532211 11111000000111455566666666666677776666555554
No 277
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=76.63 E-value=1.2e+02 Score=32.92 Aligned_cols=159 Identities=16% Similarity=0.243 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDS 408 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~ 408 (533)
..=++.+..++.+|+..|.. ...+|=+..-||-....=.+. +-+. -.++..-++.|.
T Consensus 191 ~~~~~~i~~~l~~le~ema~---lL~sLt~HfDqC~~a~~~~eg-------------~~~~--~~e~~e~l~Vl~----- 247 (412)
T PF04108_consen 191 NPLMSTILKELHSLEQEMAS---LLESLTNHFDQCVTAVRHTEG-------------EPMS--EEERQEMLEVLE----- 247 (412)
T ss_pred cccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc-------------CCCC--hHHHHHHHHHHH-----
Confidence 34567788888888866665 355566777777764431110 0000 001222222222
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 409 LKLKYDMLMAEKDEINAKVNTLMAEARSRDNH----IGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 409 Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~----I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
.-..|...|-..|..-..+|..--+. |.++-.++..++--...+++........+...-......+.-.+
T Consensus 248 ------~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~ 321 (412)
T PF04108_consen 248 ------NDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWE 321 (412)
T ss_pred ------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234444444443334444444444 44444555555544444554444444444444444455554444
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHH
Q 037185 485 RQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQ 520 (533)
Q Consensus 485 ~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~ 520 (533)
.-+. .....-..|-+||...+.|-+.|+.|..
T Consensus 322 ~~~~----~i~~~~~~l~~L~~~Y~~F~~aY~~LL~ 353 (412)
T PF04108_consen 322 EEKE----SIQAYIDELEQLCEFYEGFLSAYDSLLL 353 (412)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 4556677899999999999999998643
No 278
>PRK10698 phage shock protein PspA; Provisional
Probab=76.50 E-value=86 Score=31.31 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHH------------HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYER------------MQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~------------~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
+++....-+.++.++..++..++.|..|...=. .+-....+++..|++++......+..|+..+.
T Consensus 47 lA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~ 123 (222)
T PRK10698 47 SARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIG 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677788888888888888888853322 11222445555555555544444444444444
No 279
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.35 E-value=88 Score=33.71 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=73.0
Q ss_pred HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 348 e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
+|-.|...+-.-...+.+.--++.. |.-.|..+|..-.+.|..|++.| |..|..+-.+|-....+.+.+..+.
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~----~L~kl~~~i~~~lekI~sREk~i---N~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKS----QLDKLQQDISKTLEKIESREKYI---NNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333322 55567777777777777777765 5578999889999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037185 428 NTLMAEARSRDNHIGQIEEHSRKLHMEHAEL 458 (533)
Q Consensus 428 ~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l 458 (533)
..+-.-|+.|-..+.++.+.|.+..-+..+-
T Consensus 290 ~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 290 KQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999988888888888876555443
No 280
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=76.18 E-value=14 Score=35.07 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHH
Q 037185 277 AKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQA 340 (533)
Q Consensus 277 ~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~ 340 (533)
.-++..+..+.++.+.+..|+++|..++..|.+|+...-|.+ .|++.|..|+..+.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~e--------eLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNE--------ELKKQIEELQAKNK 68 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH--------HHHHHHHHHHHHHH
Confidence 334445566666778888999999999999999998655443 34555555555554
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.18 E-value=23 Score=36.56 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=41.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185 275 LNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGK 354 (533)
Q Consensus 275 ~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~ 354 (533)
++.||+....|...|-++...+.+.+...+.+++.|+-. +|+|.-...+|..+...|..++.+++-...
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E-----------~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE-----------NSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 444555555555556666666666666666666555543 445555556677788888888888444333
Q ss_pred h
Q 037185 355 A 355 (533)
Q Consensus 355 ~ 355 (533)
+
T Consensus 209 l 209 (290)
T COG4026 209 L 209 (290)
T ss_pred c
Confidence 3
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.84 E-value=1.3e+02 Score=35.85 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=60.8
Q ss_pred hHHhHHHH--HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 037185 216 KEADLEME--RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERI 293 (533)
Q Consensus 216 ~k~kLe~e--e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri 293 (533)
..|.+|+. +.-...||+||.|.....+.|.---+|+.|..+..++= -++-+.-+++.=
T Consensus 423 ~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E--------------------nk~~~~~~~ekd 482 (861)
T PF15254_consen 423 QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE--------------------NKRLRKMFQEKD 482 (861)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 34555554 66677888888887777655554445544433221111 011111223333
Q ss_pred HHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 037185 294 AKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKI 360 (533)
Q Consensus 294 ~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdei 360 (533)
..+..+-..-|.|+-.+|.+|..|..++--=|..| |- ---+|.-|+--|+-.+.++.-|.+-.
T Consensus 483 ~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kL--e~--sekEN~iL~itlrQrDaEi~RL~eLt 545 (861)
T PF15254_consen 483 QELLENKQQFDIETTRIKIEVEEALVNVKSLQFKL--EA--SEKENQILGITLRQRDAEIERLRELT 545 (861)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HH--HHhhhhHhhhHHHHHHHHHHHHHHHH
Confidence 34444445566677777777777766643222221 11 12356666666666444444443333
No 283
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.65 E-value=96 Score=31.41 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
+.+...-+.++.++..++..+..|..+.
T Consensus 48 A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 48 AQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555553
No 284
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.65 E-value=1.4e+02 Score=33.47 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHhHHHHhhhhchh
Q 037185 303 RNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWE--------LQGKALEDKIRQCETEKMEITGLH 374 (533)
Q Consensus 303 ~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e--------~~~~~lEdeirqleaEK~E~~~~~ 374 (533)
+-..-.+++..+.|+...|-.||-..+-=|..|--+..|+...--..+ .+.-.++.+++.+--.+--...
T Consensus 347 ql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~e-- 424 (502)
T KOG0982|consen 347 QLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSE-- 424 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhh--
Confidence 334456778888888888888888877777777666666654433322 1222355555555544444443
Q ss_pred hHhhhhhhhHHHHHHHH
Q 037185 375 EAQERGMQSEINQLKVE 391 (533)
Q Consensus 375 ~~q~~~L~gEie~Lk~E 391 (533)
|..+|+|.|--|..-
T Consensus 425 --qneelngtilTls~q 439 (502)
T KOG0982|consen 425 --QNEELNGTILTLSTQ 439 (502)
T ss_pred --hhhhhhhhhhhHHHH
Confidence 777777777665553
No 285
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.29 E-value=19 Score=37.18 Aligned_cols=76 Identities=25% Similarity=0.269 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 404 k~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
.....+|-|++.+-.||..|-..+..|-+++..=.+.++.++....+|.-.. .-+--.|+.|+.|..|||..|
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~-------~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML-------KKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhchhHHHHHHHHHHHhcccc
Confidence 3455666777777777777777777777777777777777777777765444 223335688999999999887
Q ss_pred HHH
Q 037185 484 DRQ 486 (533)
Q Consensus 484 e~Q 486 (533)
+.-
T Consensus 208 El~ 210 (290)
T COG4026 208 ELP 210 (290)
T ss_pred cch
Confidence 653
No 286
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.91 E-value=98 Score=33.96 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcccc---------ccc--ccchhHHHHHHHHHHHHH
Q 037185 16 MDRSVKQMQKLIEDGES---------LSK--FHRPELTAHIEDFYHLYQ 53 (533)
Q Consensus 16 me~~vk~mlklied~dS---------fak--~~RpeLi~~vee~yr~yr 53 (533)
=|+.|..-|||...+|- |-| +|.--.|++++-=..-|+
T Consensus 27 rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~ 75 (395)
T PF10267_consen 27 RDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYH 75 (395)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 36788888999886653 444 677777777775444444
No 287
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.77 E-value=19 Score=34.23 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDR 485 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~ 485 (533)
++.+-..++......+.++..+.+|.+.+.+||.+|+.+.. ....+.+|+.++..|+..+..
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~------------------~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK------------------SAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------ccCCHHHHHHHHHHHHHHHHH
Confidence 33333334444444555566777778888999999965544 123566777777777766654
Q ss_pred H
Q 037185 486 Q 486 (533)
Q Consensus 486 Q 486 (533)
.
T Consensus 70 ~ 70 (155)
T PF06810_consen 70 A 70 (155)
T ss_pred H
Confidence 3
No 288
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.62 E-value=16 Score=30.90 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=26.3
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDA 317 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDA 317 (533)
+.|..|..+-+.+++ ...++-.+|+.|++...+.+..|..|+..+.++
T Consensus 12 e~Ia~L~eEGekLSk--------------~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSK--------------KELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655 233445555555555555555555555544433
No 289
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.30 E-value=1.6e+02 Score=33.42 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcch
Q 037185 166 TYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESN 245 (533)
Q Consensus 166 ~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~ 245 (533)
-|+||.+|+..=.+++.-.+..|....|++.+|+ |.-..+.--+...+-|+-....+|..|=-.++=|+..--.|.
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq----k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~ 410 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ----KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALT 410 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCC
Confidence 4899999999999999999999999999999885 221111111233333444445555555444555665555566
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 037185 246 FEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVE 297 (533)
Q Consensus 246 ~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lk 297 (533)
..++++- .++..|.+++..= +.+ +..+.+|.+++.+-.
T Consensus 411 ~~EE~Lr---~Kldtll~~ln~P----nq~-------k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 411 PDEEELR---AKLDTLLAQLNAP----NQL-------KARLDELYEILRMQN 448 (508)
T ss_pred ccHHHHH---HHHHHHHHHhcCh----HHH-------HHHHHHHHHHHHhhc
Confidence 5555554 4445555554443 122 234566666666554
No 290
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.91 E-value=1.7e+02 Score=33.58 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185 431 MAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK 477 (533)
Q Consensus 431 ~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~ 477 (533)
+.-..+-+.+|.++...|++..+..-.+.+-.+.|...+..|.....
T Consensus 446 l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~ 492 (570)
T COG4477 446 LSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETE 492 (570)
T ss_pred HHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666544433333334444444444444333
No 291
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.31 E-value=30 Score=29.17 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 356 LEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 356 lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
=.++|.+|-.|=..++. ++..+...|-+|+..+.+.++.|..+++.++.+
T Consensus 10 KDe~Ia~L~eEGekLSk----~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSK----KELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555443333332 455555555555554444444444444333333
No 292
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.27 E-value=20 Score=34.23 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY 413 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~ 413 (533)
++..||+.|+.++...+.++++|.+..+.+..+|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666666665555555555554444443
No 293
>PRK02119 hypothetical protein; Provisional
Probab=73.08 E-value=16 Score=30.82 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
+...+.+||..|+..++..++-|.+|-.+|. .-+.+|..|......|..+|++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~-----------~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALI-----------EQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556889999999999999999999998887 3445667777777777777776
No 294
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=72.69 E-value=95 Score=33.01 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=10.8
Q ss_pred HHHHhhhhhHHHHHhhhh
Q 037185 253 KELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 253 kl~E~ik~LQ~~Le~~q~ 270 (533)
+..-+|.+|.++|+.+.+
T Consensus 15 ~aLqKIqelE~QldkLkK 32 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKK 32 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666666655
No 295
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=72.60 E-value=92 Score=31.59 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037185 382 QSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAA 461 (533)
Q Consensus 382 ~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~ 461 (533)
=++|+.||..+...+..+.+..+.+...|..|+.--...+...-+|+.|++-=.+. -=..+++--.-.+-+|
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sW--s~~DleRFT~Lyr~dH------ 102 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSW--SPADLERFTELYRNDH------ 102 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--ChHHHHHHHHHHHhhh------
Confidence 35899999999999999999999999999999988888888888888888753332 2233555555555666
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 462 SESSRKLVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 462 ~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
.....+.+++..+.+.|..|+.....+..
T Consensus 103 --~~e~~e~~ak~~l~~aE~~~e~~~~~L~~ 131 (207)
T PF05546_consen 103 --ENEQAEEEAKEALEEAEEKVEEAFDDLMR 131 (207)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345677788888888888887766553
No 296
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.60 E-value=12 Score=29.07 Aligned_cols=39 Identities=33% Similarity=0.501 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 396 DNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 396 ~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
+..-..|...+|.|+..++.|..|+..|.+.|..|..-+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566667777777777777777777777776665543
No 297
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.58 E-value=1e+02 Score=30.36 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=15.8
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
+.....-+.+..++..++..++.|..+.
T Consensus 48 A~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 48 ARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555666666666666666664
No 298
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.65 E-value=96 Score=29.63 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=4.3
Q ss_pred hhhHHHHHHH
Q 037185 381 MQSEINQLKV 390 (533)
Q Consensus 381 L~gEie~Lk~ 390 (533)
|+.+|+.+|.
T Consensus 143 lr~~iE~~K~ 152 (177)
T PF07798_consen 143 LRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 299
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=71.61 E-value=4.1 Score=43.28 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 037185 441 IGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEE 496 (533)
Q Consensus 441 I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEe 496 (533)
|.++|..+..|.-...++........+.+..|..++.+||.-..+.++-|...-|+
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 44445555555433334444444556677888899999999998888766554443
No 300
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.23 E-value=46 Score=27.99 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=32.1
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 427 VNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 427 v~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
|.+|-....+=..++.-.+.++.-|.-|.-..+.....++....+|+..+..|.+|.+..
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344444444444555555555555666666677777777777774443
No 301
>PRK04325 hypothetical protein; Provisional
Probab=71.10 E-value=18 Score=30.54 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 287 LKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 287 ~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
..+.+||..|+..++..++-|.+|-.+|. .-+.+|..|......|-.+|++.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~-----------~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVA-----------RQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778999999999999999999988887 34456777777777777777773
No 302
>PRK02793 phi X174 lysis protein; Provisional
Probab=70.57 E-value=18 Score=30.47 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
.+.+||..|+..++..++-|.+|-.+|. .-+.+|..|......|-.+|++.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~-----------~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVT-----------AHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778999999999999999999998888 44556777777777777777773
No 303
>PRK00295 hypothetical protein; Provisional
Probab=70.53 E-value=20 Score=29.83 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=39.6
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
+.+||..|+..++..++-|.+|-.+|. .-+.+|..|......|..+|++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~-----------~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLV-----------EQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999888887 44556777777777777777773
No 304
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=70.42 E-value=1.2e+02 Score=30.26 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.9
Q ss_pred HHHHHHHHhhHHHH
Q 037185 168 EELLGRVIQYEDKL 181 (533)
Q Consensus 168 ~~L~~RiielEdEL 181 (533)
.-+..++..++..|
T Consensus 8 ~~i~e~~~~f~~~l 21 (247)
T PF06705_consen 8 ASINERFSGFESDL 21 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666665555
No 305
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.01 E-value=61 Score=31.63 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchh----HhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLD----KAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~E----Ka~l~aEiskL~E~~~~Le~kL~e 348 (533)
...+..+|+.|++....+..++.+|+.....++.++--. ......||..|...+.+|..+|+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888888887776665554332 333567777777777777777653
No 306
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.98 E-value=36 Score=37.35 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=30.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhH
Q 037185 270 DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDA 317 (533)
Q Consensus 270 ~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDA 317 (533)
.+++.|..-+..-..+..++..++..+...+..++.+|.+|+.+|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 124 PDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777666666666666666666666666666666666655433
No 307
>PRK04406 hypothetical protein; Provisional
Probab=69.65 E-value=23 Score=30.21 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.+.+||..|+..++..++-|.+|-.+|. .-+.+|..|......|-.+|++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~-----------~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALS-----------QQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999888 3445667777777777777766
No 308
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.40 E-value=2e+02 Score=32.52 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=47.1
Q ss_pred hhhhhhhhHHHHHHHHH---HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 037185 436 SRDNHIGQIEEHSRKLH---MEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCF 506 (533)
Q Consensus 436 sRd~~I~qme~hl~qL~---~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCf 506 (533)
-.|.++++-=.-|.+|| ++..+-|...++..+.|-.|..+ +.-|--+|...=++---+---||||.-=
T Consensus 442 khddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~q---I~~E~~k~~l~slEkl~~Dyqairqen~ 512 (521)
T KOG1937|consen 442 KHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQ---IYVEEQKQYLKSLEKLHQDYQAIRQEND 512 (521)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH---HhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445544444444554 88899999999999999888765 4455566777777777777788888643
No 309
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.08 E-value=1.6e+02 Score=31.17 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=37.3
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185 292 RIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI 370 (533)
Q Consensus 292 ri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~ 370 (533)
+......-..-++.++..+++.|..++.++.-=|.. .-|-.+.+.......+|.. +..++..+.++.+++
T Consensus 165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~--~~i~~~~~~~~~~~~~l~~-------l~~~l~~~~~~~~~~ 234 (444)
T TIGR03017 165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE--KGIVSSDERLDVERARLNE-------LSAQLVAAQAQVMDA 234 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcccCcccchHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 334444445678888888888888888874333332 2233332222233445555 455555555544433
No 310
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=68.53 E-value=1.3e+02 Score=32.45 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=90.6
Q ss_pred HHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185 347 KEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAK 426 (533)
Q Consensus 347 ~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k 426 (533)
+.|-.|+.-++.-.+-++..--+.+- |.-+|-.+|..--+-|..|+++| |-.++.|=+++--++.+.+++..+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~----~Ldklh~eit~~LEkI~SREK~l---NnqL~~l~q~fr~a~~~lse~~e~ 295 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGP----YLDKLHKEITKALEKIASREKSL---NNQLASLMQKFRRATDTLSELREK 295 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766666666666655444443 77888889999888888888875 567888988998999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 427 VNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 427 v~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
-..+--+|.+|-..+.+.-..+.++.-|.-+- ..+-+-...|..++.-|..|+.+..
T Consensus 296 y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~-G~~msDGaplvkIkqavsKLk~et~ 352 (384)
T KOG0972|consen 296 YKQASVGVSSRTETLDEVMDEIEQLKQEMEEQ-GAKMSDGAPLVKIKQAVSKLKEETQ 352 (384)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCchHHHHHHHHHHHHHHHH
Confidence 99999999999888877777777665332111 1111222345566666666666543
No 311
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.24 E-value=1.7e+02 Score=31.09 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=35.4
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~ 336 (533)
.--+++.+|...|.-.+.+...|+++. ..++|.+-+++.+...|+.++-..-+|+-.-.++--..++.|-
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL----------~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQL----------DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444443322 2344444455555555555555555554444444433444333
Q ss_pred HHHHH
Q 037185 337 EKQAL 341 (533)
Q Consensus 337 E~~~~ 341 (533)
..+++
T Consensus 98 ddlsq 102 (333)
T KOG1853|consen 98 DDLSQ 102 (333)
T ss_pred HHHHH
Confidence 33333
No 312
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=68.23 E-value=1.4e+02 Score=30.85 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185 357 EDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS 436 (533)
Q Consensus 357 EdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s 436 (533)
-+.+..+--+-.|+-...+.|-+--.||.-.+-.=++.+..++..| =-|.-|-..+...+.+|-|.|..
T Consensus 17 ~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~l-----------lkla~eq~k~e~~m~~Lea~VEk 85 (272)
T KOG4552|consen 17 ADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTL-----------LKLAPEQQKREQLMRTLEAHVEK 85 (272)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHH-----------HHHhHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444432223333333445544444444444444444 23445777788888999999999
Q ss_pred hhhhhhhHHHHHHHHH
Q 037185 437 RDNHIGQIEEHSRKLH 452 (533)
Q Consensus 437 Rd~~I~qme~hl~qL~ 452 (533)
||.-|+|+...|..-.
T Consensus 86 rD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 86 RDEVIQQLQKNLKSAE 101 (272)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999887765433
No 313
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=67.51 E-value=2.8e+02 Score=33.30 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=35.4
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhch--hHhhhhHHHHHHHHHHHHHHH
Q 037185 267 LAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTL--DKAQLQSEMFCLLEKQALLDA 344 (533)
Q Consensus 267 ~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~--EKa~l~aEiskL~E~~~~Le~ 344 (533)
....-|++...+|-.--++...--.+...++.+|+.-|..++.++..+.-.++.+.+ +|.+-..-..+|.+.++.|..
T Consensus 67 d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~q 146 (916)
T KOG0249|consen 67 DMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQ 146 (916)
T ss_pred ccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHH
Confidence 333344444444433333333333333444444554444444444433333332221 111111125566677777766
Q ss_pred HHHH
Q 037185 345 RLKE 348 (533)
Q Consensus 345 kL~e 348 (533)
++++
T Consensus 147 r~~a 150 (916)
T KOG0249|consen 147 RNAA 150 (916)
T ss_pred HHHH
Confidence 6665
No 314
>PF14992 TMCO5: TMCO5 family
Probab=67.04 E-value=1.8e+02 Score=30.85 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=59.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH------HHH---HHhhhhhhhhhhhhHHhHHHHHHH----HHHHHHHHH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK------SEL---HSQIESAKRDVNIKEADLEMERRQ----VFELQNYVR 235 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk------~el---~k~~~~a~~dl~i~k~kLe~ee~e----i~~LQ~~v~ 235 (533)
+|+++|-+=|+ ..+.++-++++.- .+. -.+..-|.+|++....+||.+-.- |..||+.+.
T Consensus 22 ~lL~ki~~~E~-------~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~ 94 (280)
T PF14992_consen 22 SLLQKIQEKEG-------AIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQD 94 (280)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhc
Confidence 66666655443 3445555665551 000 011125667788888888877433 378886654
Q ss_pred HH--------HHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 236 EL--------ETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET 298 (533)
Q Consensus 236 EL--------E~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt 298 (533)
+- .++..++.+|...+-.+.+..-.+..++..+..|.+.-..--+..-.++.+|++.+.+++.
T Consensus 95 e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ 165 (280)
T PF14992_consen 95 EQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE 165 (280)
T ss_pred cccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2233444444433333333333334444444433333333333344455555555544444
No 315
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.74 E-value=68 Score=27.91 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMA 432 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~a 432 (533)
-||-||+.||+.......+...+....+.|..+-+.|..|-..-..++..|+-
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888887777888888888888888888888888777666666654
No 316
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=66.60 E-value=1.7e+02 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Q 037185 164 NETYEELLGRVIQYEDKLRVLNLSLQLSEEEVA 196 (533)
Q Consensus 164 ~~~~~~L~~RiielEdELreaneKL~~sEEe~~ 196 (533)
...++.|.+|+.++..+.+.+.-.+..++-+..
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~ 53 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQE 53 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888776666666555433
No 317
>PRK00846 hypothetical protein; Provisional
Probab=66.56 E-value=25 Score=30.38 Aligned_cols=51 Identities=25% Similarity=0.191 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
.+.+||..|++.++--++-|..|-.++.. .+..|.+|.+....|-.+|++.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~-----------qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALAD-----------ARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999998883 4457888888888888888884
No 318
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=66.23 E-value=65 Score=27.21 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 037185 396 DNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQ 443 (533)
Q Consensus 396 ~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~q 443 (533)
++-+..+|+.++.+..+.+-+..|...+-..++.++.|++..-..+..
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 556788888899999999999999999999999999999888877733
No 319
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=66.04 E-value=1.7e+02 Score=32.43 Aligned_cols=124 Identities=10% Similarity=0.158 Sum_probs=69.0
Q ss_pred hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHH
Q 037185 321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIE 400 (533)
Q Consensus 321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie 400 (533)
.....+-+.+--.+|.+.-..|-.++.. |+|-+..|..+...-. -+=....++.+..++..-.+.|.
T Consensus 197 ~~~~R~~~~~~k~~L~~~sd~Ll~kVdD-------LQD~VE~LRkDV~~Rg------vRp~~~qle~v~kdi~~a~~~L~ 263 (424)
T PF03915_consen 197 GDSNRAYMESGKKKLSEESDRLLTKVDD-------LQDLVEDLRKDVVQRG------VRPSPKQLETVAKDISRASKELK 263 (424)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcC------CcCCHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667777777777777766 5555554444333211 11222233334444444444444
Q ss_pred HHHHHHHHHHH--------HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037185 401 ALNKIMDSLKL--------KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL 458 (533)
Q Consensus 401 ~LNk~id~Lk~--------k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l 458 (533)
.|...|...|. +++....|..-++.. ..|+.|+...=.++.++=.++.|+.-++.+-
T Consensus 264 ~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q-edL~~DL~eDl~k~~etf~lveq~~~~Q~k~ 328 (424)
T PF03915_consen 264 KMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ-EDLLSDLKEDLKKASETFALVEQCTEEQEKS 328 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44444444443 567777788777777 5688888888888888888888876555443
No 320
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=65.32 E-value=1.6e+02 Score=32.96 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=32.1
Q ss_pred hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHH
Q 037185 321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEV 392 (533)
Q Consensus 321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El 392 (533)
++.|--.|-.++-+|..+...+...|.+.+.....+.++--+.-.+--. +.-|.+..++++-.|...+
T Consensus 188 l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~----~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 188 LKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNN----FQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhcccchHHHHHHHH
Confidence 3333334445555666666666666666444444443333333222222 2224555555555544433
No 321
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=65.22 E-value=3.2e+02 Score=33.19 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHh
Q 037185 166 TYEELLGRVIQYEDKLRVLNLSLQLSEEEVAR 197 (533)
Q Consensus 166 ~~~~L~~RiielEdELreaneKL~~sEEe~~r 197 (533)
....+.+++..++.++..+...+.....+...
T Consensus 441 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 472 (1047)
T PRK10246 441 RLAQLQVAIQNVTQEQTQRNAALNEMRQRYKE 472 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544444443333333333
No 322
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=65.04 E-value=2.6e+02 Score=32.20 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhh
Q 037185 166 TYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQI 206 (533)
Q Consensus 166 ~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~ 206 (533)
-|+.|.+.|+.+.+-+- +-+..+|.+..+....+..|.
T Consensus 147 ly~elr~~vl~n~~~~G---e~~~~lEk~Le~i~~~l~qf~ 184 (570)
T COG4477 147 LYEELRRDVLANRHQYG---EAAPELEKKLENIEEELSQFV 184 (570)
T ss_pred HHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHH
Confidence 46666666666666554 334444444444444444444
No 323
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.74 E-value=53 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhh
Q 037185 328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEIT 371 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~ 371 (533)
|.++++.|++.+.++..++.. .+...+.|-.|.-.+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~-------~~~~~k~L~~ERd~~~ 39 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSV-------HEIENKRLRRERDSAE 39 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 556666666666666666666 6666777766655443
No 324
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.62 E-value=2.7e+02 Score=32.10 Aligned_cols=214 Identities=22% Similarity=0.216 Sum_probs=99.4
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL 335 (533)
+.++.+-..|.-.+...+..=-||++| .+ ||+-|...+- +...+..|+..+||.+--.|.+--.+-.+.+.|
T Consensus 204 ~~nrh~~erlk~~~~s~~e~l~kl~~E-qQ---lq~~~~ehkl----lee~~~rl~~~~s~VegS~S~~~l~~ek~r~~l 275 (613)
T KOG0992|consen 204 EENRHLKERLKIVEESRLESLGKLNSE-QQ---LQALIREHKL----LEEHLERLHLQLSDVEGSWSGQNLALEKQRSRL 275 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH-HH---HHHHHHHHHH----HHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 344445555555555555555666666 44 4443333332 334566666677766644444433444444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhh--HhhhhhhhHHHHHHHHHhhhhhHHHHHH---HHHHHHH
Q 037185 336 LEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHE--AQERGMQSEINQLKVEVCERDNRIEALN---KIMDSLK 410 (533)
Q Consensus 336 ~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~--~q~~~L~gEie~Lk~El~~~~~~Ie~LN---k~id~Lk 410 (533)
.+-+.. ++.++-..++.+++-+.....-.++++.+-| .++-.+..-|++|-.|++-.-+.-..=| ..+-.++
T Consensus 276 ee~~~~---e~~e~rk~v~k~~~l~q~~~~~~~eL~K~kde~~~n~~~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~ 352 (613)
T KOG0992|consen 276 EEQVAE---ETTEKRKAVKKRDDLIQSRKQVSFELEKAKDEIKQNDDKVKLIEELQDELSVALKECREENKIETQVNFER 352 (613)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444333 4444444455555555444444444332111 2444455555555555544333333333 1222222
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 411 LKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEH-SRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV 489 (533)
Q Consensus 411 ~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~h-l~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~ 489 (533)
.++-..- .....+.+|+|+.-+|--.+..+-.+ +..|...- .+ .-..+-.-+++|+.|.+.-|..
T Consensus 353 ~~lq~~e----tek~ee~tlla~~~dr~se~~e~teqkleelk~~f---~a-------~q~K~a~tikeL~~El~~yrr~ 418 (613)
T KOG0992|consen 353 NKLQNEE----TEKKEEKTLLAAADDRFSEYSELTEQKLEELKVQF---TA-------KQEKHAETIKELEIELEEYRRA 418 (613)
T ss_pred HHhhchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 22344556677776666555333222 33332211 11 1112224456777777777777
Q ss_pred Hhhhh
Q 037185 490 ILDAA 494 (533)
Q Consensus 490 i~e~a 494 (533)
|...+
T Consensus 419 i~~~~ 423 (613)
T KOG0992|consen 419 ILRNA 423 (613)
T ss_pred ccccc
Confidence 76666
No 325
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=63.86 E-value=2.7e+02 Score=31.91 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185 405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARS 436 (533)
Q Consensus 405 ~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s 436 (533)
.+.+++.++|.|-.++..|+++..+.+.|+..
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~ 444 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDT 444 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Confidence 34555556666666666666666665554443
No 326
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=63.71 E-value=21 Score=35.88 Aligned_cols=16 Identities=25% Similarity=0.750 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q 037185 47 DFYHLYQSLAERYDHLT 63 (533)
Q Consensus 47 e~yr~yraLAeryd~~~ 63 (533)
.||++|.+| ..||++-
T Consensus 120 ~f~~l~~~~-~~f~elV 135 (205)
T PF12238_consen 120 PFMKLYKAF-NTFEELV 135 (205)
T ss_pred HHHHHHHHH-HHHHHHh
Confidence 578999888 4688653
No 327
>PRK00736 hypothetical protein; Provisional
Probab=63.49 E-value=31 Score=28.73 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=38.6
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
+.+||..|+..++..++-|.+|-.+|. .-+.+|..|......|-.+|++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~-----------~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLA-----------EQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999988999998888887 4455677777777777777776
No 328
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=63.43 E-value=1.3e+02 Score=28.07 Aligned_cols=67 Identities=24% Similarity=0.252 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 037185 163 ANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETR 240 (533)
Q Consensus 163 ~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~ 240 (533)
..-||+.+..+...+|.-|-....-|..+++++.+....+++ ....|+..+.-+..+.+.+++.+..
T Consensus 18 ~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~-----------d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 18 DSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALER-----------DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345889999999999999999999999999999887544443 3445555566666666666555544
No 329
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.20 E-value=1.9e+02 Score=32.34 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=71.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 037185 393 CERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDEL 472 (533)
Q Consensus 393 ~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL 472 (533)
++.+..+.++|-.++.-..+...+++++..+.+.-.++.|-+..++..|+.+-....||.-+.+..-+.. -.+++..+
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~--~~~t~~~~ 86 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE--KTLTVDVL 86 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3556677888888888888888888888888888888888889999999999999999888877743333 33344333
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhh
Q 037185 473 -----RFRVKELENEVDRQRMVILDAA 494 (533)
Q Consensus 473 -----~~rv~eLE~Eve~Q~~~i~e~a 494 (533)
+.++..=.++...|+..++...
T Consensus 87 ~~en~~~r~~~eir~~~~q~~e~~n~~ 113 (459)
T KOG0288|consen 87 IAENLRIRSLNEIRELREQKAEFENAE 113 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 3444444555666666665543
No 330
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.18 E-value=1e+02 Score=26.92 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDEL 472 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL 472 (533)
+|..+.+.+..+..-...+-.+...+..++..|.++.+--|.++....+|..-|+.+...|-....--...+..|
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQL 78 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556666777777777777777888888888899999999999998888888888888766655544444444433
No 331
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.98 E-value=1.8e+02 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET 298 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt 298 (533)
+.-.|.+++.+|..+...++......-.--+++.+++.++..|..
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888877776666554444555555555555544
No 332
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.96 E-value=91 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMA 432 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~a 432 (533)
-+..|...++.+..+++.|......+..++..+.+
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 333
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.94 E-value=1.9e+02 Score=33.94 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Q 037185 337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYD-- 414 (533)
Q Consensus 337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e-- 414 (533)
|..+..+..|.. |+.++..++.-|-+ ...+.-..|..+++.-++++..|-..|-..-.-..
T Consensus 32 E~~~e~d~~l~~-------le~e~~~~y~~kve----------~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~ 94 (660)
T KOG4302|consen 32 ESETERDKKLLR-------LEQECLEIYKRKVE----------EASESKARLLQEIAVIEAELNDLCSALGEPSIIGEIS 94 (660)
T ss_pred ccHHHHHHHHHH-------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc
Q ss_pred -----HhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH--------HHhhHhHHHHHHHHHHHHHHHHH
Q 037185 415 -----MLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL--------IAASESSRKLVDELRFRVKELEN 481 (533)
Q Consensus 415 -----~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l--------~~~~~~~~~~v~eL~~rv~eLE~ 481 (533)
.|......|.-.+.-|.+--..|-.++.+|=.++.+|+.+.+.- +-.++---..+++|+.++.+|++
T Consensus 95 ~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ 174 (660)
T KOG4302|consen 95 DKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQK 174 (660)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhhHh
Q 037185 482 EVDRQRMVILDAAEEKREAIRQLCFSLEH 510 (533)
Q Consensus 482 Eve~Q~~~i~e~aEeKREAIRQLCfsleh 510 (533)
| +..=++---+.+++|.-||=.|.+
T Consensus 175 e----k~~Rlekv~~~~~~I~~l~~~Lg~ 199 (660)
T KOG4302|consen 175 E----KSDRLEKVLELKEEIKSLCSVLGL 199 (660)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHhCC
No 334
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.94 E-value=48 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 283 RMQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 283 ~~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
+.++.+|.+++..++..++..+.+++.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555544444444444433
No 335
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.54 E-value=84 Score=26.49 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 332 MFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
+..|.+....++..+..++.....++.++..+..
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333334444444333
No 336
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.36 E-value=1.3e+02 Score=28.22 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 037185 422 EINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELEN 481 (533)
Q Consensus 422 ~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~ 481 (533)
.|..+|++|=.-+..-.+-.+++.+.+..++-.-..+-...+..+..|..|..++.++|.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444433333344444555556666666655555555557777777777777777763
No 337
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.27 E-value=18 Score=38.54 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 340 ALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 340 ~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
..|..++.+.|.++..+|+.+.+++.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~ 165 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQ 165 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 34556666655555556666655554
No 338
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=62.17 E-value=64 Score=31.45 Aligned_cols=82 Identities=27% Similarity=0.321 Sum_probs=52.3
Q ss_pred ccccCCCCCCchhhhHHhhhhHHHHHHHHHhhHHHH--------------HHHHHHHhhhHHHHHhhHHHHHHhhhhhhh
Q 037185 146 IHRDAPINMDGKELTEEANETYEELLGRVIQYEDKL--------------RVLNLSLQLSEEEVARLKSELHSQIESAKR 211 (533)
Q Consensus 146 ~~~~~~~~i~~~~~~e~~~~~~~~L~~RiielEdEL--------------reaneKL~~sEEe~~rlk~el~k~~~~a~~ 211 (533)
+|-|+++|++. .+-++.+.|....|++| ..++++|+.+++.+.++...+. ...+
T Consensus 33 ~~~rve~g~dn--------e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye----~Vs~ 100 (157)
T COG3352 33 IHSRVENGIDN--------EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYE----LVSR 100 (157)
T ss_pred hhcccccCCCh--------HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 44466777764 45667777777777777 6889999999999988864433 4445
Q ss_pred hhhhhHHhHHH-HHHHHHHHHHHHHHHHH
Q 037185 212 DVNIKEADLEM-ERRQVFELQNYVRELET 239 (533)
Q Consensus 212 dl~i~k~kLe~-ee~ei~~LQ~~v~ELE~ 239 (533)
|+.+-..+... ++..+..|..+|.+|..
T Consensus 101 d~Npf~s~~~qes~~~veel~eqV~el~~ 129 (157)
T COG3352 101 DFNPFMSKTPQESRGIVEELEEQVNELKM 129 (157)
T ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55544444332 34455555555555543
No 339
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.83 E-value=1.8e+02 Score=29.20 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=15.5
Q ss_pred HHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 294 AKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 294 ~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
..+...|++..+.+.||+..+-+|..+
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666544
No 340
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.60 E-value=95 Score=31.63 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
++..+|.|.++.+..+||.|..|-..+.+.|
T Consensus 179 ~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 179 KKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554
No 341
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.59 E-value=75 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMA 432 (533)
Q Consensus 404 k~id~Lk~k~e~L~~EK~~l~~kv~~L~a 432 (533)
...+.|+.+..-|..|......+|.+|+.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555555544
No 342
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.13 E-value=23 Score=27.64 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhh
Q 037185 401 ALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHI 441 (533)
Q Consensus 401 ~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I 441 (533)
.|.++.+.||..||.|.++-+.|......|.+++..=-+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999998887654443
No 343
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.73 E-value=3.3e+02 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 037185 399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTL 430 (533)
Q Consensus 399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L 430 (533)
|..|.+.+..|+.++..+......+...+...
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 274 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEA 274 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 344
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.59 E-value=43 Score=29.02 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHhhhhhHHHHHhhhh
Q 037185 244 SNFEIERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 244 l~~s~~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
.....+++..+...-+.++.+++.++.
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~ 50 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRA 50 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777766665
No 345
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=60.49 E-value=2.4e+02 Score=30.09 Aligned_cols=121 Identities=26% Similarity=0.347 Sum_probs=80.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH-----HhHHhHHHHHHHHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHH
Q 037185 386 NQLKVEVCERDNRIEALNKIMDSLKLKYD-----MLMAEKDEINAKVNTLMAEARSRDNHIGQI--EEHSRKLHMEHAEL 458 (533)
Q Consensus 386 e~Lk~El~~~~~~Ie~LNk~id~Lk~k~e-----~L~~EK~~l~~kv~~L~ad~~sRd~~I~qm--e~hl~qL~~e~~~l 458 (533)
+.||-++....+.|+.++-+|+..|.-=+ +||+--..| .. -++.|+.| ++.|.+|..+-|-.
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L-------~q----ENeElG~q~s~Gria~Le~eLAmQ 248 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTL-------QQ----ENEELGHQASEGRIAELEIELAMQ 248 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHH-------HH----HHHHHHhhhhcccHHHHHHHHHHH
Confidence 45666666666677777766666554211 222211111 11 12233332 57788898888888
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHcC
Q 037185 459 IAASESSRKLVDELRFRVKELENEVDRQRMVIL---DAAEEKREAIRQLCFSLEHYRSGYQELRQAFLG 524 (533)
Q Consensus 459 ~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~---e~aEeKREAIRQLCfslehyr~~y~~L~~~~~G 524 (533)
-+.+++++++.++|..-..+|.+.||+-...|+ .--+++|--|-+|- .|..++-+++.+
T Consensus 249 Ks~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~-------k~~~q~sqav~d 310 (330)
T KOG2991|consen 249 KSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLK-------KGLEQVSQAVGD 310 (330)
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcc
Confidence 899999999999999999999999998776655 34567888887763 455566666544
No 346
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=59.76 E-value=1.5e+02 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhH-HHHHHHHHHHHHHhhhhhhhh
Q 037185 385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK-DEINAKVNTLMAEARSRDNHI 441 (533)
Q Consensus 385 ie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK-~~l~~kv~~L~ad~~sRd~~I 441 (533)
+..|+.........+..++..+..|+....-|..|. ..+...+.-||--+++=+.+|
T Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~ 100 (136)
T PF04871_consen 43 EKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKR 100 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHH
Confidence 333333333333334444444444444444444444 445555666666666666665
No 347
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.72 E-value=48 Score=34.74 Aligned_cols=65 Identities=15% Similarity=0.325 Sum_probs=46.2
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
..++=++..|+.++........+|..-..++.++++.|+.|.+++.....+...|+..+..++.+
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666777766667777776667777777788888887777777777777777766665
No 348
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.66 E-value=1.2e+02 Score=26.52 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLK 389 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk 389 (533)
+.+..+|..|....+.|..+|-. .++....++.-..|.+. .|...|+.++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~-------~~ar~~~Le~~~~Evs~-------rL~~a~e~Ir 84 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQ-------AEARANRLEEANREVSR-------RLDSAIETIR 84 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHh-------HHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 57888888899999999999988 44444455555555554 5555555543
No 349
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=59.03 E-value=26 Score=28.40 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 305 NEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 305 ~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
+.|++|...+-...+.-.++.+....+|++|..+|..|.++|.-
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888899999999999999999999999999875
No 350
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.94 E-value=3.1e+02 Score=30.96 Aligned_cols=54 Identities=26% Similarity=0.371 Sum_probs=39.9
Q ss_pred HHHhHHHHHHHHHHHHHHhhcc---ccccc----------ccchhHHHHHHHHHHHHHHHHHHhhhh
Q 037185 9 LAENLEEMDRSVKQMQKLIEDG---ESLSK----------FHRPELTAHIEDFYHLYQSLAERYDHL 62 (533)
Q Consensus 9 l~~nL~~me~~vk~mlklied~---dSfak----------~~RpeLi~~vee~yr~yraLAeryd~~ 62 (533)
+++|=...++-|+....|+..| +++.+ |-|-..+.|..++.-.-..||+--+.+
T Consensus 112 ~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i 178 (542)
T KOG0993|consen 112 LQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRI 178 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Confidence 4667778899999999998843 44433 677777888888888888888654443
No 351
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=58.77 E-value=23 Score=32.92 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=35.5
Q ss_pred chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 322 TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 322 s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
-+|||.|++-|+.|.++...++.--+.+--+++-||-.++|--+
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999888888866677777777776555
No 352
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=58.63 E-value=41 Score=34.70 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh-----h--------hhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE-----S--------AKRDVNIKEADLEMERRQVFELQNYVR 235 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~-----~--------a~~dl~i~k~kLe~ee~ei~~LQ~~v~ 235 (533)
+...||..|-..-+..+..+..+|.+++..+.+|+..-. . ...+..++.+.++-++.+|..|.++++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777888888888888888877776431 1 112234788888888888888875555
Q ss_pred HH
Q 037185 236 EL 237 (533)
Q Consensus 236 EL 237 (533)
+|
T Consensus 257 ~L 258 (259)
T PF08657_consen 257 EL 258 (259)
T ss_pred hc
Confidence 54
No 353
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.53 E-value=1.8e+02 Score=30.89 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHH-------hHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDM-------LMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLV 469 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~-------L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v 469 (533)
..+..|--.+..+..||.- |-+||..+-=.|++|+-.+.+..+.+.++.+.+ -+-+.+.+-.+...
T Consensus 77 ~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~-------~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 77 ASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY-------REKIRELERQKRAH 149 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3556666666667666553 334777777777777766555555554444444 44444555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037185 470 DELRFRVKELENEVDRQRMV 489 (533)
Q Consensus 470 ~eL~~rv~eLE~Eve~Q~~~ 489 (533)
+.|+..+.+|-.+|......
T Consensus 150 d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666433333
No 354
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.37 E-value=1.4e+02 Score=30.44 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 037185 328 LQSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~ 347 (533)
+.-|...|+|+...|.+++.
T Consensus 191 ~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 44566667777777766654
No 355
>PRK10698 phage shock protein PspA; Provisional
Probab=58.09 E-value=2.1e+02 Score=28.68 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 382 QSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 382 ~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
...+..|+.++......+..|...+..|+.++....+-++.|.++..+-.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777888888877777777777766654433
No 356
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=57.97 E-value=2.1e+02 Score=28.60 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=13.6
Q ss_pred hhhhhHHHHHhhhhhHHHHhhhh
Q 037185 257 GTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 257 ~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
.+..|+++|---.++.+.++..|
T Consensus 48 q~~~Lq~qLlq~~k~~~~l~~eL 70 (206)
T PF14988_consen 48 QTSELQDQLLQKEKEQAKLQQEL 70 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666556555555555
No 357
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.91 E-value=3.6e+02 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred hhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHH
Q 037185 353 GKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALN 403 (533)
Q Consensus 353 ~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LN 403 (533)
-+-|-+++-++.++-.+.+. +...|+.++++|+.-...+...+.++.
T Consensus 340 ~kdLkEkv~~lq~~l~eke~----sl~dlkehassLas~glk~ds~Lk~le 386 (654)
T KOG4809|consen 340 NKDLKEKVNALQAELTEKES----SLIDLKEHASSLASAGLKRDSKLKSLE 386 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 33355666666654444433 666777777777776655555555553
No 358
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.68 E-value=52 Score=27.11 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=18.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 037185 387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNT 429 (533)
Q Consensus 387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~ 429 (533)
+|..++......|..|..+++.+++.......|-.-.|.+|++
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444444444444444444433
No 359
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.47 E-value=1.9e+02 Score=34.00 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=20.5
Q ss_pred HHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 313 ALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 313 ~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.+..|.+.+..++..+..-|.+|.+....++.+..+
T Consensus 498 ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~ 533 (771)
T TIGR01069 498 IIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEH 533 (771)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556665555555555555
No 360
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.45 E-value=2.7e+02 Score=31.27 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185 356 LEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY 413 (533)
Q Consensus 356 lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~ 413 (533)
++.++.|++..-.... +|...+..|...++.-+..++..|..|.++...+..++
T Consensus 18 ~~~~laq~~k~~s~~~----aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLS----AQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766555444 47777777888777777777777777666665555443
No 361
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=57.21 E-value=2.4e+02 Score=31.28 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhh---hHH--HHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQD---DVT--TLNAKLDYERMQVLKFQERIAKVET 298 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~---e~a--~~k~Kle~e~~ev~kLqeri~~lkt 298 (533)
..+|..|++.+.-|+|.-..+.-. ..+.|..+..++...+. .++ +-++..++.+ .+|.++-.+|-+
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~------~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k---~~L~~~sd~Ll~ 220 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSE------VKESISSIREKIKKVKSASTNASGDSNRAYMESGK---KKLSEESDRLLT 220 (424)
T ss_dssp --------------------------------------------------------HHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH---HHHHHHHHHHHH
Confidence 456666766666666664444322 12333333333333222 111 3344444444 234444444445
Q ss_pred chhhhhHHHHHHHHHHhh--------HHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 299 NLSDRNNEVAELKIALSD--------AEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 299 ~Ls~~d~EIr~LK~~lsD--------AeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.+.++++=|.+|+..+.. --+...-+-+.+..++.+|.+-...+.--++.
T Consensus 221 kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 221 KVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 555555555555544431 22233344556666777777777777666664
No 362
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.20 E-value=2.1e+02 Score=33.70 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=21.4
Q ss_pred HHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 312 IALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 312 ~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
..+..|.+.+..+...+..=|.+|.+....++.+..+
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~ 538 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEE 538 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555556555566665555555555555
No 363
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.06 E-value=53 Score=33.64 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE 391 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E 391 (533)
+.-+.|+--+++=.++|+. +..-||+++++...+. ..|+.|++.|+.|
T Consensus 75 ~~~~siLpIVtsQRDRFR~---Rn~ELE~elr~~~~~~-----------~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQ---RNAELEEELRKQQQTI-----------SSLRREVESLRAD 122 (248)
T ss_pred CCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 3556788888888888886 4444777777776633 3556666666653
No 364
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.11 E-value=2.2e+02 Score=28.32 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHhhchhhhhHHHHHH
Q 037185 290 QERIAKVETNLSDRNNEVAEL 310 (533)
Q Consensus 290 qeri~~lkt~Ls~~d~EIr~L 310 (533)
++.+.+..++++....++.-|
T Consensus 103 ~~al~na~a~lehq~~R~~NL 123 (221)
T PF05700_consen 103 KEALDNAYAQLEHQRLRLENL 123 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677666666655
No 365
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=56.01 E-value=2e+02 Score=27.91 Aligned_cols=132 Identities=14% Similarity=0.201 Sum_probs=71.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHH----HHHHHHHHHHHHHH
Q 037185 272 VTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMF----CLLEKQALLDARLK 347 (533)
Q Consensus 272 ~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEis----kL~E~~~~Le~kL~ 347 (533)
+.+|.+=+....+.-.+|++++......+...+.+.......+..+.+..----+.|..-+. ....+...+..=..
T Consensus 3 ~~a~~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~ 82 (158)
T PF09486_consen 3 ASAWRTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRD 82 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 45666666666677777888777777777776666666655555444443332233322222 22333334444344
Q ss_pred HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 348 e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.+..++..+|.+..++ ...+......|..++..|+.+...+|....-.+.+...+
T Consensus 83 ~l~~~~~~~e~~~a~l-------------------------~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ 137 (158)
T PF09486_consen 83 VLEERVRAAEAELAAL-------------------------RQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAA 137 (158)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4333333344433333 334445556666677777777666666666555555554
Q ss_pred H
Q 037185 428 N 428 (533)
Q Consensus 428 ~ 428 (533)
.
T Consensus 138 e 138 (158)
T PF09486_consen 138 E 138 (158)
T ss_pred H
Confidence 3
No 366
>PRK09343 prefoldin subunit beta; Provisional
Probab=55.91 E-value=1.6e+02 Score=26.79 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhch
Q 037185 328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGL 373 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~ 373 (533)
|..++..+......+..++..+-.++..++.+++.++.-..|++.|
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L 50 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKL 50 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555556666666666677776666666777777777666666553
No 367
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.79 E-value=1.4e+02 Score=25.92 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 280 DYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 280 e~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
..-+-++..|-..-..+.+.+..+.++...+-..+..+-.+- .+...+.+++..+..+...++.++.+
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666655555555554444333322 45556666666666666666666666
No 368
>PF14282 FlxA: FlxA-like protein
Probab=54.48 E-value=41 Score=30.00 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHhhhh
Q 037185 356 LEDKIRQCETEKMEIT 371 (533)
Q Consensus 356 lEdeirqleaEK~E~~ 371 (533)
|+.+|.+++.++++..
T Consensus 63 LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 63 LQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777666543
No 369
>PTZ00464 SNF-7-like protein; Provisional
Probab=54.07 E-value=2.4e+02 Score=28.30 Aligned_cols=30 Identities=3% Similarity=0.145 Sum_probs=14.2
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
++++|.++...+..++..|..+...+..|-
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak 45 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLK 45 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444444445544444444443
No 370
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.90 E-value=83 Score=28.07 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
..++.+|.+.....+.+|.. +|.+++.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQA-------LETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHhC
Confidence 56667777777777777777 67666666
No 371
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.41 E-value=1.6e+02 Score=26.04 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh------------hhchhHhhhhHHHHHHHHHHHHHHHH
Q 037185 278 KLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE------------KFTLDKAQLQSEMFCLLEKQALLDAR 345 (533)
Q Consensus 278 Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee------------K~s~EKa~l~aEiskL~E~~~~Le~k 345 (533)
.+.....+...+|..+..+-++++.++..+++.+.++-.-.. ..|.+++ ...-+..|......++..
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~~ 82 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTD-KEEAIQELKEKKETLELR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheec-HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185 346 LKEWELQGKALEDKIRQCETEKMEI 370 (533)
Q Consensus 346 L~e~e~~~~~lEdeirqleaEK~E~ 370 (533)
++.++.+..+++.++..++..-.++
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 372
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=53.17 E-value=3.4e+02 Score=29.71 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=40.8
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHHHHhhchhhhhHHHHHHH
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIAKVETNLSDRNNEVAELK 311 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~~lkt~Ls~~d~EIr~LK 311 (533)
.+|++.-+.||.-...+.++.-.--.+.+-++.+ +.+||-++......|+.-+.....|.
T Consensus 76 sKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klr 136 (391)
T KOG1850|consen 76 SKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLR 136 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHH
Confidence 4577888888887777777665555566666666 67888888887777765544444433
No 373
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.43 E-value=2.6e+02 Score=28.10 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET 298 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt 298 (533)
+..|...+..|+.+...+...+..+....+.=...+..|...|..+..
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554444444444434444444444444443
No 374
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=52.40 E-value=2.3e+02 Score=27.49 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 037185 245 NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIA 294 (533)
Q Consensus 245 ~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~ 294 (533)
+|+.++|...-+.-+++|-+|-..++.-..++.+-+.--+....|.++|.
T Consensus 73 ~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 73 RYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988888777777665444444444444443
No 375
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.39 E-value=1.6e+02 Score=25.72 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHhhhhc
Q 037185 356 LEDKIRQCETEKMEITG 372 (533)
Q Consensus 356 lEdeirqleaEK~E~~~ 372 (533)
++.+++....-..++..
T Consensus 25 l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 25 VEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44444444444444443
No 376
>PF14992 TMCO5: TMCO5 family
Probab=52.30 E-value=3.1e+02 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 422 EINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 422 ~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
..++++..+.+.+.+-.++|..+++...+.+
T Consensus 113 ~sk~~lqql~~~~~~qE~ei~kve~d~~~v~ 143 (280)
T PF14992_consen 113 FSKNKLQQLLESCASQEKEIAKVEDDYQQVH 143 (280)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888876655554
No 377
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.27 E-value=59 Score=29.44 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.|=++|..++.++..+-.+|.+||..+.. |-.|=..|.-+|.+|..+|.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~-----------l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQE-----------LLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999998888873 333445677777777777777
No 378
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=51.94 E-value=5.4e+02 Score=31.64 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=70.1
Q ss_pred HHHHHhHHhHHHHHHHHHH-------HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 411 LKYDMLMAEKDEINAKVNT-------LMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 411 ~k~e~L~~EK~~l~~kv~~-------L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
.+++.|.+|...++.+|.. ++++.++-- .| ..|--...|--+|.+-+.-.+++.+.|.-++..+-|.|+-.
T Consensus 1092 helenLrnEieklndkIkdnne~~QVglae~nslm-Ti-ekDmcaselfneheeeS~ifdaa~nKiakiHe~AfEieknl 1169 (1424)
T KOG4572|consen 1092 HELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLM-TI-EKDMCASELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNL 1169 (1424)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCC-cc-chhHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777631 222222210 00 11222355666777777778888888888888888888743
Q ss_pred ------------------HHHHHHHhhhhhHHHHHHHH-HhhhhHhhhhhHHHHHHHHc
Q 037185 484 ------------------DRQRMVILDAAEEKREAIRQ-LCFSLEHYRSGYQELRQAFL 523 (533)
Q Consensus 484 ------------------e~Q~~~i~e~aEeKREAIRQ-LCfslehyr~~y~~L~~~~~ 523 (533)
++|...=+--.++|-+||=| |=.-+||-|+.-..+|+-|.
T Consensus 1170 keQaielank~dpeLraiead~deeitQkdee~eaiIa~ld~d~dh~~de~ekdreqLi 1228 (1424)
T KOG4572|consen 1170 KEQAIELANKGDPELRAIEADIDEEITQKDEETEAIIAMLDIDIDHDRDEIEKDREQLI 1228 (1424)
T ss_pred HHHHHHHHhcCCchHHHHHhhhhHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333345677777655 67889999999998887664
No 379
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.37 E-value=2.4e+02 Score=27.32 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e 348 (533)
.-..++..|.+.+..|....+.
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ 68 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYER 68 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665543
No 380
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.16 E-value=4.4e+02 Score=30.42 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhHHH
Q 037185 395 RDNRIEALNKIMDSLKLKYDMLMAEKDE 422 (533)
Q Consensus 395 ~~~~Ie~LNk~id~Lk~k~e~L~~EK~~ 422 (533)
...+...|.+.++.++.++.......+.
T Consensus 340 ~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 340 SEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544444433
No 381
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.14 E-value=81 Score=30.82 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDK 359 (533)
Q Consensus 325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEde 359 (533)
|..+..+|..|..++..|..++.+|..++..++..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777766665555543
No 382
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=51.06 E-value=60 Score=30.10 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=44.7
Q ss_pred HHHhhhhhHHHHHhhhhhHHHHhhhhHHHH----HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYER----MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~----~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
+..++..|++.++++..|+-.-..|-..-+ +..-.|.+|++.+++.+..+...|.+.|-...|.-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH
Confidence 345556666666666665554444433333 56778899999999999888888888888777764
No 383
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.32 E-value=65 Score=26.69 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHh
Q 037185 342 LDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 342 Le~kL~e~e~~~~~lEdeirql 363 (533)
++.+|.++|.+.-+.|+-|.++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~L 23 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEEL 23 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555333333344333333
No 384
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.29 E-value=2.5e+02 Score=27.20 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=30.7
Q ss_pred HHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 037185 312 IALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALED 358 (533)
Q Consensus 312 ~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEd 358 (533)
..+-..+.-+-.|+-.|.+-|..|.+.+.+|..+++.+..+...+++
T Consensus 78 ~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee 124 (158)
T PF09744_consen 78 EELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEE 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccch
Confidence 34444455555677777778888888888888888775444444433
No 385
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.58 E-value=1.8e+02 Score=26.51 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=7.2
Q ss_pred HHHHHHHhhhhhHHHHHHHh
Q 037185 344 ARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 344 ~kL~e~e~~~~~lEdeirql 363 (533)
.+++.++.+..+++.++..+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 386
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.53 E-value=1.9e+02 Score=27.20 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL 451 (533)
+|..|-..+|....-...+..|...+...|..+-.|+.+=..-+..||..|..+
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443444444444444444444444444444444445444443
No 387
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.35 E-value=1.2e+02 Score=30.52 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Q 037185 287 LKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETE 366 (533)
Q Consensus 287 ~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaE 366 (533)
++|++.+.-+....+.-+.||+.|--+|+ .| .|+.+|.+|-++.+.-+++|+. +-+-++.+.-+
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt-------~e--emQe~i~~L~kev~~~~erl~~-------~k~g~~~vtpe 152 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALT-------TE--EMQEEIQELKKEVAGYRERLKN-------IKAGTNHVTPE 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------hH--HHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCCHH
Confidence 33334444444445555666776666655 22 4666777777777777777766 66666666553
No 388
>PF15294 Leu_zip: Leucine zipper
Probab=49.25 E-value=3.5e+02 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhHHHHHhhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
.||.+|++.+..|++.|..+++
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~ 153 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEK 153 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444
No 389
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=48.41 E-value=2.3e+02 Score=26.45 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
.+++|+-.|+--.+-++.|...|
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~ky 103 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKY 103 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHH
Confidence 45666666666666666666663
No 390
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.38 E-value=1.9e+02 Score=25.46 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
||=||+.||+.-.....++..+.-.=+.|..+.+-|..|...-.++|..|+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444333333333333333344444445555544444444444
No 391
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.33 E-value=71 Score=27.90 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=11.5
Q ss_pred hhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 320 KFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 320 K~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.+|.|++--.| +..|......|...+..
T Consensus 78 ~~~ve~~~~eA-~~~l~~r~~~l~~~~~~ 105 (129)
T cd00890 78 GVYVEKSLEEA-IEFLKKRLETLEKQIEK 105 (129)
T ss_pred CEEEEecHHHH-HHHHHHHHHHHHHHHHH
Confidence 44555443222 23334444444444444
No 392
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=48.15 E-value=3.3e+02 Score=28.13 Aligned_cols=107 Identities=8% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHH
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMF 333 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEis 333 (533)
.+..+..+|..+...-+.+..-+..++..-++.-.-+.+-++.+++-+..-.++++++..+.-+.+-..-=|..-.+-+.
T Consensus 117 ~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~ 196 (258)
T cd07680 117 AEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLD 196 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544444444555566666666666666666666666666666667777777766665555555556667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 037185 334 CLLEKQALLDARLKEWELQGKALEDKI 360 (533)
Q Consensus 334 kL~E~~~~Le~kL~e~e~~~~~lEdei 360 (533)
.|.+...+-...+..+...|+-+|.+.
T Consensus 197 ~ln~~~~~y~~~m~~vfd~~Q~~Ee~R 223 (258)
T cd07680 197 DVGKTTPQYMENMEQVFEQCQQFEEKR 223 (258)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877666666665543
No 393
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.07 E-value=69 Score=29.33 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.|=++++.++.++..+-.+|..||+.+.. |-.|=..|.-+|.+|..+|.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~e-----------l~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAE-----------LLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888899998888873 334456677777777777776
No 394
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=47.88 E-value=2.2e+02 Score=28.68 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185 375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME 454 (533)
Q Consensus 375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e 454 (533)
++.+..|.+....+.--|...+++...|+.+++.....-.-....-..+...+..|-++-..=..++.++-+++++|..+
T Consensus 104 eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.32 E-value=87 Score=35.47 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhH
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAELKIALSDA 317 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDA 317 (533)
..++++.|+.++..++.++.+|.+|...|++.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~ 589 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDS 589 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 56677788888888888888999999998765
No 396
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.05 E-value=76 Score=25.40 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185 395 RDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAE 433 (533)
Q Consensus 395 ~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad 433 (533)
+...|..|...++.|..+.+.|..+...+...+..|.++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666666666666666666666666554
No 397
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=45.93 E-value=1.1e+02 Score=28.98 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=45.5
Q ss_pred HHHhhhhHHHH-------HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHH
Q 037185 273 TTLNAKLDYER-------MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDAR 345 (533)
Q Consensus 273 a~~k~Kle~e~-------~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~k 345 (533)
..|+++.++.+ +++.-|++.|...+.+-+++-+-||-+.+.-. ..|..=+-.|..+...|+.+
T Consensus 4 nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~----------~~l~~llkqLEkeK~~Le~q 73 (129)
T PF15372_consen 4 NEWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSV----------ESLNQLLKQLEKEKRSLENQ 73 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccH----------HHHHHHHHHHHHHHHHHHHH
Confidence 46888887776 55666777777777777788888877555422 23344455666667777777
Q ss_pred HHHHHhh
Q 037185 346 LKEWELQ 352 (533)
Q Consensus 346 L~e~e~~ 352 (533)
|+.++..
T Consensus 74 lk~~e~r 80 (129)
T PF15372_consen 74 LKDYEWR 80 (129)
T ss_pred HHHHHHH
Confidence 7764443
No 398
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.88 E-value=2.9e+02 Score=30.44 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.|..|.+.|..++.++..+..+++.+.+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555555555544
No 399
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.81 E-value=1.8e+02 Score=24.27 Aligned_cols=14 Identities=7% Similarity=0.506 Sum_probs=6.3
Q ss_pred hHHHHHHHhHHHHh
Q 037185 355 ALEDKIRQCETEKM 368 (533)
Q Consensus 355 ~lEdeirqleaEK~ 368 (533)
.+.++++++.+...
T Consensus 15 ~~~eEL~kvk~~n~ 28 (61)
T PF08826_consen 15 AIQEELTKVKSANL 28 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 400
>PF14282 FlxA: FlxA-like protein
Probab=45.75 E-value=64 Score=28.78 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhhHH-HHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHH
Q 037185 248 IERLMKELEGTHQLQGQLKLAQDDVT-TLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVA 308 (533)
Q Consensus 248 ~~ei~kl~E~ik~LQ~~Le~~q~e~a-~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr 308 (533)
+..|..|...|+.|+.+|..+..+-. ..+.| ...+.-||.-|..|.++|..+..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k----~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQK----QQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555211 11111 13344455555555555554444443
No 401
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=45.41 E-value=2e+02 Score=27.58 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185 482 EVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF 522 (533)
Q Consensus 482 Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~ 522 (533)
+.|.++.++-.--+.=++++=++|.-+|+|++.|..|-...
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555566777889999999999999997764
No 402
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.06 E-value=3.3e+02 Score=27.19 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=17.6
Q ss_pred HHHHhhHHhhhchhHhhhhHHHH
Q 037185 311 KIALSDAEEKFTLDKAQLQSEMF 333 (533)
Q Consensus 311 K~~lsDAeeK~s~EKa~l~aEis 333 (533)
...+.++.-+|+.||+.|..+++
T Consensus 102 ~~~l~~~~~qfl~EK~~LEke~~ 124 (206)
T PF14988_consen 102 AEKLQEAESQFLQEKARLEKEAS 124 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999877763
No 403
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=44.63 E-value=6.9e+02 Score=30.74 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHh
Q 037185 338 KQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLK-LKYDML 416 (533)
Q Consensus 338 ~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk-~k~e~L 416 (533)
+++.-..+++.|+.+...++.++.-+.+++-++. .++.++. ++ .+.-.|
T Consensus 730 e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~------------------~~~~~~~------------~~e~E~~~l 779 (984)
T COG4717 730 EAAREEQQLTQRESRLESLEAQLEGVAAEAYELS------------------ASLDQRE------------LKEEELALL 779 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhh------------------hhhhhhh------------hhhHHHHHH
Confidence 4556667778888887778877776655444432 2221111 11 011122
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 037185 417 MAEKDEINAKVNTLMAEARSRDNHIGQIEE 446 (533)
Q Consensus 417 ~~EK~~l~~kv~~L~ad~~sRd~~I~qme~ 446 (533)
-.=++.++..|..|.+.+..+..+|.+||.
T Consensus 780 Ee~~d~~~ee~~el~a~v~~~~~qi~~lE~ 809 (984)
T COG4717 780 EEAIDALDEEVEELHAQVAALSRQIAQLEG 809 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223555666777777888888888888874
No 404
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.54 E-value=1.2e+02 Score=25.07 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
.|..|+-++..|..+++.|..+.+.+...|...+.|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566555555555555555444443
No 405
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=44.13 E-value=2.1e+02 Score=24.70 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=38.6
Q ss_pred hHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 261 LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
.|..|..++.-...|..-...-. -...+......|++.+....-.+.+|..++.-++.+ |.|..|
T Consensus 10 v~~sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n--p~kF~l 74 (97)
T PF09177_consen 10 VQSSLDRLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN--PSKFNL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccccCC
Confidence 34444444444555554433221 223455566677777778888888888888877766 666654
No 406
>PRK04406 hypothetical protein; Provisional
Probab=43.94 E-value=1.7e+02 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHh
Q 037185 342 LDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 342 Le~kL~e~e~~~~~lEdeirql 363 (533)
++.+|.++|.+.-+.|+-|..|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555433333344433333
No 407
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=43.82 E-value=5.6e+02 Score=29.53 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=42.5
Q ss_pred HHHHHHhhhHHHHHhhHHHHHHhhh--hhhhh--------hhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 037185 183 VLNLSLQLSEEEVARLKSELHSQIE--SAKRD--------VNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLM 252 (533)
Q Consensus 183 eaneKL~~sEEe~~rlk~el~k~~~--~a~~d--------l~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~ 252 (533)
....+++.++++---++.+.-++.+ .+... ++=-+...+.-+.+|..||++..+|......-++|.+++.
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe 371 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFE 371 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHH
Confidence 3445667777777667766666553 11110 2233334444577788888777777777777777776665
Q ss_pred H
Q 037185 253 K 253 (533)
Q Consensus 253 k 253 (533)
.
T Consensus 372 ~ 372 (622)
T COG5185 372 L 372 (622)
T ss_pred H
Confidence 4
No 408
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.70 E-value=76 Score=31.68 Aligned_cols=92 Identities=14% Similarity=0.240 Sum_probs=53.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHH--HHHHHHHH
Q 037185 213 VNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYE--RMQVLKFQ 290 (533)
Q Consensus 213 l~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e--~~ev~kLq 290 (533)
++|-..+++..-.++..+- ...+.+++.++++ +..-+++++|++++...+.+..-+++- +.++.+++
T Consensus 100 iRVP~~~~~~~l~~l~~~g--------~v~~~~~~~~DvT---~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie 168 (262)
T PF14257_consen 100 IRVPADKFDSFLDELSELG--------KVTSRNISSEDVT---EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIE 168 (262)
T ss_pred EEECHHHHHHHHHHHhccC--------ceeeeeccccchH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5566666666555554432 2223333334444 445556666666666555555544432 35677777
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 291 ERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 291 eri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
.+|.+..+++.....+++.|...++
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777777777777766654
No 409
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.55 E-value=1.4e+02 Score=25.55 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH-HhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETE-KMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIM 406 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaE-K~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~i 406 (533)
.|.+|.-+|=.|.=++-- +|+.+.+...+ ..++- .+.++|+-++..|+-|+....+.|..+.+.+
T Consensus 8 ~i~~L~KENF~LKLrI~f-------Lee~l~~~~~~~~~~~~----keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYF-------LEERLQKLGPESIEELL----KENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHhhhhHHHHHHH-------HHHHHHhcccccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555544444 44444432221 11111 1444566666666666666666665555544
No 410
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=43.50 E-value=1.4e+02 Score=31.89 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185 427 VNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA 494 (533)
Q Consensus 427 v~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a 494 (533)
.++..|-+|=|+.+-.++|.=+-+++. +.+.=.+||.+|.+||+||..-|..|.+.-
T Consensus 233 ~qnk~AAtRYRqKkRae~E~l~ge~~~-----------Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 233 QQNKAAATRYRQKKRAEKEALLGELEG-----------LEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344447888899998888877776653 334558999999999999999999888754
No 411
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.73 E-value=1.3e+02 Score=24.48 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 037185 251 LMKELEG 257 (533)
Q Consensus 251 i~kl~E~ 257 (533)
+.||...
T Consensus 6 ~~rL~Ke 12 (66)
T PF10458_consen 6 IERLEKE 12 (66)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 412
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.62 E-value=4.3e+02 Score=27.88 Aligned_cols=105 Identities=15% Similarity=0.270 Sum_probs=54.6
Q ss_pred HHHHHHHhHHHHhhhhchhhHhhhhhhhHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185 356 LEDKIRQCETEKMEITGLHEAQERGMQSEIN--QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAE 433 (533)
Q Consensus 356 lEdeirqleaEK~E~~~~~~~q~~~L~gEie--~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad 433 (533)
+-+-+.-++..+.+..=|+. .|..-++ .....-..+...++...+.+...+.+++.+..|......++
T Consensus 154 ~~~~l~DLesa~vkV~WLR~----~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~------ 223 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRS----KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEV------ 223 (269)
T ss_pred HHHHHHHHHHcCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 66677778877777665322 2222111 11111223334444444555555555555555555555554
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 037185 434 ARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKE 478 (533)
Q Consensus 434 ~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~e 478 (533)
..=-.+|..|=+||.+|+++-+.|. +.|.-++.+|..
T Consensus 224 -~e~~~~i~e~~~rl~~l~~~~~~l~-------k~~~~~~sKV~k 260 (269)
T PF05278_consen 224 -KEIKERITEMKGRLGELEMESTRLS-------KTIKSIKSKVEK 260 (269)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3333455677778888888775543 344445555543
No 413
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.73 E-value=2.9e+02 Score=32.38 Aligned_cols=65 Identities=26% Similarity=0.297 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc----------hhHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 283 RMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT----------LDKAQLQSEMFCLLEKQALLDARLKEWELQ 352 (533)
Q Consensus 283 ~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s----------~EKa~l~aEiskL~E~~~~Le~kL~e~e~~ 352 (533)
++--.||+++|+.++. ||+.+|++.-||.+|.. .=|-=-..||+..+=+..+-.++|-+++.-
T Consensus 349 kqak~Klee~i~elEE-------Elk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEa 421 (832)
T KOG2077|consen 349 KQAKLKLEEKIRELEE-------ELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEA 421 (832)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345678888887765 77888888877766521 112223578888888888888888884333
Q ss_pred hh
Q 037185 353 GK 354 (533)
Q Consensus 353 ~~ 354 (533)
++
T Consensus 422 vr 423 (832)
T KOG2077|consen 422 VR 423 (832)
T ss_pred Hh
Confidence 33
No 414
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=41.68 E-value=7.7e+02 Score=30.46 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=50.7
Q ss_pred hHHHHHHHhHHHHhhhhchhhHhhhhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185 355 ALEDKIRQCETEKMEITGLHEAQERGM-QSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAE 433 (533)
Q Consensus 355 ~lEdeirqleaEK~E~~~~~~~q~~~L-~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad 433 (533)
+.++-.|.+++|.-+.=.+.-+++++| +...++++.+.+-+ ++..+.+.+-+|+..++.++.|-..+.+.+..|-++
T Consensus 954 is~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aR--h~kefE~~mrdhrselEe~kKe~eaiineiee~eae 1031 (1424)
T KOG4572|consen 954 ISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFAR--HEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAE 1031 (1424)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777776654444444555555 45566777777654 566666677777777777777777777777666665
Q ss_pred h
Q 037185 434 A 434 (533)
Q Consensus 434 ~ 434 (533)
+
T Consensus 1032 I 1032 (1424)
T KOG4572|consen 1032 I 1032 (1424)
T ss_pred H
Confidence 5
No 415
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.58 E-value=79 Score=36.74 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
.+++|+++|+++..-+.+.++.|..-+.++..|
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 677788887776664444444444433333333
No 416
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=41.48 E-value=3.7e+02 Score=26.71 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 037185 463 ESSRKLVDELRFRVKELENEVDRQRMVILDAAEE 496 (533)
Q Consensus 463 ~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEe 496 (533)
+.+...+..+..++.-|..-+..+|..-++.+-+
T Consensus 188 dl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~ 221 (240)
T PF12795_consen 188 DLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVE 221 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666555554443
No 417
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.25 E-value=1.4e+02 Score=31.28 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
|..+...+.+++.+|.++..|-+++..|+++.+.|.-..|-|+.-|.+=-=.--+|-.+|+..|.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
No 418
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=41.16 E-value=7.7e+02 Score=30.34 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=94.3
Q ss_pred HhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHH-HHHHHHhhhh
Q 037185 318 EEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEIN-QLKVEVCERD 396 (533)
Q Consensus 318 eeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie-~Lk~El~~~~ 396 (533)
+.++-..+.++-+.+..+......|+++|..|+..--..-.+...+ +.+. .|..+++ ..-.++-.-=
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~---l~~l---------~l~~el~~~~~~d~ls~m 619 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEA---LDEL---------GLSRELSPEQQLDILSTM 619 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHhc---------cCCccCCcHHHHHHHHHH
Confidence 4455566677777777777777777777776554433222222222 1121 2222222 2233344455
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRV 476 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv 476 (533)
+.+..++|..+.|..+..-|..|.+.-.++|.-|.+..-.-++.+ -..-|..+++......+ ++++..+..+..+.
T Consensus 620 kd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~l-s~~~~~~r~~~~~e~~~---Ee~r~~le~~~~~t 695 (984)
T COG4717 620 KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDL-STLFCVQRLRVAAELQK---EEARLALEGNIERT 695 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchh-HHHHHHHHHHHHHHHhh---HHHHHHHhhhHHHH
Confidence 677888899999998999999999999999999999987777777 44556666665554443 44455566666677
Q ss_pred HHHHHH
Q 037185 477 KELENE 482 (533)
Q Consensus 477 ~eLE~E 482 (533)
+||.-+
T Consensus 696 ~El~~~ 701 (984)
T COG4717 696 KELNDE 701 (984)
T ss_pred HHHHHH
Confidence 766644
No 419
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=41.13 E-value=2.8e+02 Score=25.26 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=26.2
Q ss_pred hHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 037185 316 DAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIR 361 (533)
Q Consensus 316 DAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeir 361 (533)
.+-+.|..+.++...-|.+++--...-......|+.....+++.+.
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~ 91 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIE 91 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665555555566665444444444444
No 420
>PRK02119 hypothetical protein; Provisional
Probab=40.77 E-value=1.9e+02 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 342 LDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 342 Le~kL~e~e~~~~~lEdeirqlea 365 (533)
++.+|.++|.+.-+.|+-|..|..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444445554444444
No 421
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.37 E-value=5.6e+02 Score=28.54 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHH-HHhhhhhHH------------HHhhhhHHHHHHH
Q 037185 220 LEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQ-LKLAQDDVT------------TLNAKLDYERMQV 286 (533)
Q Consensus 220 Le~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~-Le~~q~e~a------------~~k~Kle~e~~ev 286 (533)
+......|..|+.++.+|. ..+-.++...++.-..+ +..+..... .|+..|+.++.++
T Consensus 253 i~~a~~~i~~L~~~l~~l~---------~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l 323 (582)
T PF09731_consen 253 IAHAKERIDALQKELAELK---------EEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREEL 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHhhchh-hhhHHHHHHHHHH-----hhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037185 287 -----LKFQERIAKVETNLS-DRNNEVAELKIAL-----SDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKA 355 (533)
Q Consensus 287 -----~kLqeri~~lkt~Ls-~~d~EIr~LK~~l-----sDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~ 355 (533)
.+|+..++.-...++ .+.+++...+..+ ....+++..|+..-.+.|..|......|+.-+..
T Consensus 324 ~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~------- 396 (582)
T PF09731_consen 324 EEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDA------- 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHH-HHHHHHHHHHHH
Q 037185 356 LEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRI-EALNKIMDSLKL 411 (533)
Q Consensus 356 lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~I-e~LNk~id~Lk~ 411 (533)
......+-+. -+.|.-.+..|+.-+....... .-+...|+.|+.
T Consensus 397 ~~~~~~~~~~------------~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 397 RSEAEDENRR------------AQQLWLAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
No 422
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.99 E-value=4.2e+02 Score=26.90 Aligned_cols=43 Identities=28% Similarity=0.525 Sum_probs=30.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhh
Q 037185 462 SESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYR 512 (533)
Q Consensus 462 ~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr 512 (533)
+..+++.|..--.+..+||. +|...|-+-. .++.||+-||.-|
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~---kq~~L~rEN~-----eLKElcl~LDeer 145 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELED---KQEELIRENL-----ELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHH-----HHHHHHHHHhccc
Confidence 35577778888888888874 4444444433 3789999999988
No 423
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=39.86 E-value=2.5e+02 Score=29.55 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=52.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 411 LKYDMLMAEKDEINAKVNTLMAEARSRDNH---IGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQR 487 (533)
Q Consensus 411 ~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~---I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~ 487 (533)
.+++-|+-|--...-|+.|=.|--|+||.+ +.+||..+..|.-+--.|-.+-+.++..-.-|-.+-.||-.+++.-|
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~ 138 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR 138 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345556555555555666666778899976 66777788887777777777777776666666666666666666444
Q ss_pred HHH
Q 037185 488 MVI 490 (533)
Q Consensus 488 ~~i 490 (533)
..+
T Consensus 139 ~~l 141 (292)
T KOG4005|consen 139 QEL 141 (292)
T ss_pred HHH
Confidence 333
No 424
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.78 E-value=1.1e+02 Score=24.44 Aligned_cols=45 Identities=31% Similarity=0.471 Sum_probs=24.0
Q ss_pred HHhhhhhh---hhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 432 AEARSRDN---HIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 432 ad~~sRd~---~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
|--++|.. +|.+|+.++..|..+. +.+...+..|...+..|..++
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en-------~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESEN-------EELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 33445544 4556666666666666 444444455555555555443
No 425
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.64 E-value=2.5e+02 Score=30.27 Aligned_cols=17 Identities=18% Similarity=-0.019 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037185 332 MFCLLEKQALLDARLKE 348 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e 348 (533)
+.+|.+.+......+.+
T Consensus 70 i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 34444444444444444
No 426
>PRK11519 tyrosine kinase; Provisional
Probab=39.40 E-value=6.7e+02 Score=29.11 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 445 EEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 445 e~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
+.++.+|..+.++|.+....-|-.|-.|..+...|+.++...+..+..
T Consensus 317 ~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (719)
T PRK11519 317 DAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTA 364 (719)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444443333333444444444444455444444444443
No 427
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=39.18 E-value=3e+02 Score=25.00 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh---------chh----------------
Q 037185 247 EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET---------NLS---------------- 301 (533)
Q Consensus 247 s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt---------~Ls---------------- 301 (533)
...++-.+.+....++.++..++..+..++..+ .+.....+.+..++. .+.
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~----~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~ 79 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASI----NELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVI 79 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEE
Q ss_pred -----------hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhh
Q 037185 302 -----------DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKME 369 (533)
Q Consensus 302 -----------~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E 369 (533)
+.+..+.-|+..+. .+...+.+|......+..++.. +...+.++..++.+
T Consensus 80 v~lG~g~~vE~~~~eA~~~l~~~~~-----------~l~~~~~~l~~~l~~~~~~~~~-------~~~~l~~l~~~~~~ 140 (140)
T PRK03947 80 VSLGAGYSAEKDLDEAIEILDKRKE-----------ELEKALEKLEEALQKLASRIAQ-------LAQELQQLQQEAAA 140 (140)
T ss_pred EEcCCCEEEEecHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC
No 428
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.17 E-value=5.2e+02 Score=27.77 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 405 ~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
.++.||.+.-.|+..-+.+.-.-..|-.|+-.++-+|.=+|++|+ .+.+.++.|...++-+..|.|
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~--------------s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN--------------SCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666677777766666666553 455677777777777777777
Q ss_pred HHHHHHh
Q 037185 485 RQRMVIL 491 (533)
Q Consensus 485 ~Q~~~i~ 491 (533)
+=.....
T Consensus 127 rsQ~~~~ 133 (307)
T PF10481_consen 127 RSQQAAS 133 (307)
T ss_pred HHHHhhc
Confidence 7555444
No 429
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=38.60 E-value=10 Score=42.35 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
+.|..||+.|.....-...++++|-..-.+..|| +..|++-|++.+.++|.
T Consensus 376 qEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kl---l~qyq~RLedSE~RLr~ 426 (495)
T PF12004_consen 376 QEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKL---LLQYQARLEDSEERLRR 426 (495)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHhhhhhHHHHHH
Confidence 3444555555554444444444554443333333 33455555555544444
No 430
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=38.41 E-value=2e+02 Score=27.80 Aligned_cols=70 Identities=11% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKF 321 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~ 321 (533)
+-|..|+..+..-|.....+-.+...|+.++.+..+ .|..+...+.+-|..-...|.+|+..+......+
T Consensus 110 ~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~---~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 110 EIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSR---NLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
No 431
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.25 E-value=2.8e+02 Score=24.38 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
.-..+...+..|-..+..-+.+-+++..++.||--... ....+-..|.+|-.-+++||..+
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~----~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEE----QVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555556666677777777777754221 22344456677777777777654
No 432
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=38.18 E-value=4.1e+02 Score=26.31 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=89.9
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh----hhhhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 037185 162 EANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE----SAKRDVNIKEADLEMERRQVFELQNYVREL 237 (533)
Q Consensus 162 ~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~----~a~~dl~i~k~kLe~ee~ei~~LQ~~v~EL 237 (533)
+.+.-|++-...|-.||.-|+.+--.++.+=.....+-..+..++. ++..+.. .-|-..=.++....-.+.++
T Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~---~~Ls~al~~la~~~~ki~~~ 85 (224)
T cd07623 9 ETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEH---TSLSRALSQLAEVEEKIEQL 85 (224)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHH
Confidence 3455788889999999999998877777654443333222222221 2222210 00111111222222222222
Q ss_pred HHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh----HHHHHHHHHHHHHHHHHhh-----chhhhhHHHH
Q 037185 238 ETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKL----DYERMQVLKFQERIAKVET-----NLSDRNNEVA 308 (533)
Q Consensus 238 E~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl----e~e~~ev~kLqeri~~lkt-----~Ls~~d~EIr 308 (533)
... -+..+...+-+.+++-.+.+-.+..-... +.+. ..=...+.+.++++..|+. .+.....+|+
T Consensus 86 ~~~-----qa~~d~~~l~e~L~eY~r~i~svk~~f~~-R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~ 159 (224)
T cd07623 86 HGE-----QADTDFYILAELLKDYIGLIGAIKDVFHE-RVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIK 159 (224)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 222 12233333444444333333322221111 1110 0001334455555555542 2556788888
Q ss_pred HHHHHHhhHHhhhchhHhhhhHHHHHH-HHHHHHHHHHHHHH
Q 037185 309 ELKIALSDAEEKFTLDKAQLQSEMFCL-LEKQALLDARLKEW 349 (533)
Q Consensus 309 ~LK~~lsDAeeK~s~EKa~l~aEiskL-~E~~~~Le~kL~e~ 349 (533)
+++.++..|..+|-.=...++.||... .+.+.....-|..|
T Consensus 160 ~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~ 201 (224)
T cd07623 160 EWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKY 201 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888887 34455555555553
No 433
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.05 E-value=1.8e+02 Score=32.82 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
+|+....+.+.+|.. +|..+......+..+|+.++..|+.....|..+|..
T Consensus 91 ~L~~r~~~id~~i~~---av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 91 RLQKREQSIDQQIQQ---AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHhhhhHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444443 444444444445566666666666666666666643
No 434
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=38.02 E-value=92 Score=28.39 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185 475 RVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF 522 (533)
Q Consensus 475 rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~ 522 (533)
+..++-.+...+-..|..-|+++.|++|+ +-|+.||..-++-+
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~-----~g~~~G~~~g~~e~ 56 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQ-----LGYEQGLEQFWQEA 56 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 55666667788888899999999999997 56788887766544
No 435
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=37.88 E-value=6.3e+02 Score=28.42 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhch
Q 037185 284 MQVLKFQERIAKVETNL 300 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~L 300 (533)
....+|.+++..+..++
T Consensus 46 ~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 46 QSAKDLIERSKSLAREI 62 (593)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 436
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=37.87 E-value=5.3e+02 Score=27.55 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
.++..+-.++..+++..+.....++..++.|...+++
T Consensus 329 ~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 329 EEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666
No 437
>PRK00295 hypothetical protein; Provisional
Probab=37.83 E-value=1.6e+02 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINA 425 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~ 425 (533)
-|+.||+.+......++.|......+..
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333
No 438
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.64 E-value=2.5e+02 Score=32.12 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=21.8
Q ss_pred hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHH
Q 037185 297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEK 338 (533)
Q Consensus 297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~ 338 (533)
+..+..+..+|+..++.+..+...+.-++.+++..+..|...
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 334444455555555555555555555555555555555443
No 439
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.32 E-value=2.8e+02 Score=24.07 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQR 487 (533)
Q Consensus 419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~ 487 (533)
|...|...+.+=+.-|++|-.++ +...+..|+.++..|..+...=+
T Consensus 50 eL~~LE~~Le~aL~~VR~rK~~~-----------------------l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 50 ELQQLEQQLESALKRVRSRKDQL-----------------------LMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666665554 22344566666666666554433
No 440
>PRK00736 hypothetical protein; Provisional
Probab=37.08 E-value=1.6e+02 Score=24.52 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.-|+.||+.+......++.|......+..++
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444444
No 441
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=37.01 E-value=2.7e+02 Score=24.17 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhHH-------hHHHHHHHHHHHHH
Q 037185 404 KIMDSLKLKYDMLMA-------EKDEINAKVNTLMA 432 (533)
Q Consensus 404 k~id~Lk~k~e~L~~-------EK~~l~~kv~~L~a 432 (533)
--||.+|.+++.++. .++....+|.+=+.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~ 39 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQ 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 335555555555555 45555555533333
No 442
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=36.72 E-value=70 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHhh
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAELKIALSD 316 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD 316 (533)
+..|..++....+-|..++.+++.||..|..
T Consensus 53 ~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 53 NEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666777788888887765
No 443
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.68 E-value=2.6e+02 Score=24.26 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHH
Q 037185 295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQ 339 (533)
Q Consensus 295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~ 339 (533)
.|+.++..--.|+..+++.|.+.+..|.-=|.+-..||..|.-+.
T Consensus 29 e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 29 EYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444456666777777777777666666666666665443
No 444
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=36.66 E-value=2.2e+02 Score=33.56 Aligned_cols=92 Identities=23% Similarity=0.181 Sum_probs=53.7
Q ss_pred HHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHhhhhhhH-hh---hc---------CCCCCCCCCC-CCCCCCCC
Q 037185 22 QMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGE-LQ---KN---------VPSDIPLQGS-GNTKSGFA 87 (533)
Q Consensus 22 ~mlklied~dSfak~~RpeLi~~vee~yr~yraLAeryd~~~~e-l~---~~---------i~s~~~~~~s-g~~~~~s~ 87 (533)
.=||.|.||- +.+-+|+...=.=||+|...+++--..-++ |+ .. .|..+|.-+. +.+.+..-
T Consensus 560 ~~Lk~Is~G~----~~k~~vl~~~v~kyra~f~~~~~~~~~l~~~l~~y~~~~a~~~~~~~~p~~~Pp~~~l~~s~~~~v 635 (758)
T KOG1956|consen 560 VDLKNISDGR----KDKKEVLRDIVTKYRAYFHETERKIGCLGESLQRYLEFIASTLTGPDDPEGEPPLLGLEGSTSEKV 635 (758)
T ss_pred HHHHHhccCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCCCcc
Confidence 3456677664 555678777778899999999853222111 11 11 3334443222 23333333
Q ss_pred CCCCCCCc-ccccCCCCCCCCCCcCCCCCCC
Q 037185 88 QGSPLLTP-DRKMGLHNTSCQATSSTSGGSS 117 (533)
Q Consensus 88 ~~s~~~sp-~~k~~~~k~~~ra~~fgsg~ss 117 (533)
.|+|.|-| +...++.+.+.-+++|++|+-+
T Consensus 636 ~p~cgp~p~y~~~~~~~rg~ipp~~~~g~~~ 666 (758)
T KOG1956|consen 636 GPKCGPKPVYRQLGKFKRGGIPPAANAGHPK 666 (758)
T ss_pred CCCCCCCCcceeccccCCCCCCCCCCCCCcc
Confidence 44455666 4557888888888888777644
No 445
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=36.53 E-value=12 Score=42.30 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhH
Q 037185 261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNN 305 (533)
Q Consensus 261 LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~ 305 (533)
|...+..+...+..++.+....+.++..|+..+..|+..|.....
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~ 126 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPL 126 (619)
T ss_dssp ---------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 444444555555555666666777777788777777776654443
No 446
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=36.02 E-value=3e+02 Score=24.15 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQ 362 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirq 362 (533)
.++.|-.....|+.--++ ||.+++.
T Consensus 74 ~V~~LE~~v~~LD~ysk~-------LE~k~k~ 98 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKE-------LESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhc
Confidence 444444444444444444 5555543
No 447
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.41 E-value=2.9e+02 Score=27.92 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 386 NQLKVEVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 386 e~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
..++++|..-+.+|..|...+..=+.++..|
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777777777777776666666554
No 448
>PRK14011 prefoldin subunit alpha; Provisional
Probab=35.31 E-value=1.2e+02 Score=28.90 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 306 EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 306 EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
.|.+-...+-|.=--+|.||+. -+....++.|.+.++....-+...+.++.....
T Consensus 65 ~i~d~dkVlVdIGtGy~VEk~~--------~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~ 119 (144)
T PRK14011 65 KIVDPDKAILGVGSDIYLEKDV--------SEVIEDFKKSVEELDKTKKEGNKKIEELNKEIT 119 (144)
T ss_pred EecCCCeEEEEccCCeEEEecH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566777754 445555555555533333334444444444333
No 449
>PHA02109 hypothetical protein
Probab=35.18 E-value=78 Score=31.83 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 404 k~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
+.|..|..++|.|+.|...|..|+.|+-++|+.|
T Consensus 193 ~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~ 226 (233)
T PHA02109 193 KQISELTIKLEALSDEACQVKHKILNLRAEVKRR 226 (233)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577789999999999999999999999999876
No 450
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.07 E-value=4.5e+02 Score=25.85 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=25.6
Q ss_pred hhhhhhhhhHHHHHHHH-HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 435 RSRDNHIGQIEEHSRKL-HMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 435 ~sRd~~I~qme~hl~qL-~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
..|+.....=+.++++. --||..|+ .++..|.-||+...||-...+
T Consensus 119 ~~ke~~~~~ee~~~~~y~~~eh~rll----~LWr~v~~lRr~f~elr~~Te 165 (182)
T PF15035_consen 119 EQKEAEWREEEENFNQYLSSEHSRLL----SLWREVVALRRQFAELRTATE 165 (182)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555553 45665543 456666777777776655544
No 451
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.89 E-value=1.3e+02 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
.++++++++++.+.++..+|++|++...-.+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e 33 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANE 33 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888877765433
No 452
>PHA03011 hypothetical protein; Provisional
Probab=34.87 E-value=2.1e+02 Score=26.58 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhh
Q 037185 395 RDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHI 441 (533)
Q Consensus 395 ~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I 441 (533)
++..|.++-..+|.|..++++|..|-..+.+.+.-|..-+.+-|++|
T Consensus 55 k~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I 101 (120)
T PHA03011 55 KEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEI 101 (120)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 44567777777899999999999999998888877766666655555
No 453
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=34.17 E-value=47 Score=37.81 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK 477 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~ 477 (533)
-|+.+|+.|..+-.+++.+....+.++.+|+...+|+-+..-++ .-..++ .++++.--+.|.
T Consensus 383 iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaEL-----------------lVlleN-~~tld~~Ds~~~ 444 (550)
T PF00509_consen 383 IIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAEL-----------------LVLLEN-QRTLDLHDSNVN 444 (550)
T ss_dssp HHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHH-----------------HHHhcc-ccchhhhHHHHH
Confidence 34444444444444455555555666666666666665555444 222221 225555567788
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 037185 478 ELENEVDRQRMVILDAAEE 496 (533)
Q Consensus 478 eLE~Eve~Q~~~i~e~aEe 496 (533)
.|.+.|.+| +-+-|++
T Consensus 445 ~L~ekvk~q---L~~na~d 460 (550)
T PF00509_consen 445 NLYEKVKRQ---LRENAED 460 (550)
T ss_dssp HHHHHHHHH---HGTGEEE
T ss_pred HHHHHHHHH---Hhccchh
Confidence 888877665 3444443
No 454
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.88 E-value=2e+02 Score=31.25 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhhhHHHHHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQ 269 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q 269 (533)
+++..+...-++++.+++.++
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~ 50 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQ 50 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 455
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=33.84 E-value=2.9e+02 Score=23.29 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185 295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336 (533)
Q Consensus 295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~ 336 (533)
.++.......+-|..+...+.+...+.---+..+.++...|-
T Consensus 11 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~ 52 (127)
T smart00502 11 KLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELR 52 (127)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444433
No 456
>PLN02320 seryl-tRNA synthetase
Probab=33.79 E-value=1.4e+02 Score=33.84 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhhHHHHHhhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
+++..+.+.-+.++.+++.++.
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ 114 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRA 114 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444
No 457
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=33.68 E-value=8e+02 Score=28.35 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=10.8
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHH
Q 037185 271 DVTTLNAKLDYERMQVLKFQERIAK 295 (533)
Q Consensus 271 e~a~~k~Kle~e~~ev~kLqeri~~ 295 (533)
++.+|..+=..+...+-+|++++.+
T Consensus 295 E~kaR~~k~~~e~sk~eeL~~~L~~ 319 (531)
T PF15450_consen 295 EQKARDAKEKLEESKAEELATKLQE 319 (531)
T ss_pred HHHHHHHHhHHHHhhHHHHHHHHHH
Confidence 3344444433344444444444443
No 458
>PLN02678 seryl-tRNA synthetase
Probab=33.50 E-value=1.8e+02 Score=32.40 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhh
Q 037185 248 IERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 248 ~~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
.+++..+.+.-++++.+++.++.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~ 54 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRK 54 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666776777666665555
No 459
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=33.39 E-value=4.7e+02 Score=28.62 Aligned_cols=56 Identities=9% Similarity=0.228 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 037185 441 IGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEE 496 (533)
Q Consensus 441 I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEe 496 (533)
|.++++.|.+++-.-..+-+-+....-.|--|++|..-|++++-.|+..|+.++.+
T Consensus 225 vs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~ 280 (372)
T COG3524 225 VSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSS 280 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 55666666666554444444444445567889999999999999999999988775
No 460
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=33.39 E-value=5.3e+02 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 292 RIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 292 ri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
+|..+.+++......|...+..+..|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~a~ 117 (327)
T TIGR02971 91 AAAKLFKDVAAQQATLNRLEAELETAQ 117 (327)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 461
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=33.31 E-value=2.5e+02 Score=24.12 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
..|..=|-.|+++..|+.-.+.+ +.+..+++..-. -..++..|.++++.|-..+..++.+|..|
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~-------L~~~~~~~d~s~------~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQE-------LQDEYKQMDPSL------GRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhccccc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666776666666 777777776622 22467888999999888888888888877
No 462
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=33.22 E-value=3.7e+02 Score=24.81 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=18.6
Q ss_pred hhhhhhhhHHhHHHH-HHHHHHHH-------HHHHHHHHh
Q 037185 209 AKRDVNIKEADLEME-RRQVFELQ-------NYVRELETR 240 (533)
Q Consensus 209 a~~dl~i~k~kLe~e-e~ei~~LQ-------~~v~ELE~~ 240 (533)
+.+|+.|+--+|.-- +.+++.|+ ++|-+|+..
T Consensus 11 eLVDLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvleLel~ 50 (108)
T PF14739_consen 11 ELVDLQIETNRLREQHEAEKFELKNEVLRLENRVLELELH 50 (108)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777776666433 66666666 555555543
No 463
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=33.19 E-value=6.3e+02 Score=26.96 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-----hhhH
Q 037185 231 QNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-----DRNN 305 (533)
Q Consensus 231 Q~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-----~~d~ 305 (533)
-.+++++|-....|.|+.-++++-.+.-|.. -.++..+=..-+++..-+.|+|+.|..--+ .|..
T Consensus 216 ldRmk~aEaqvneLEvsN~DLsaKLe~gkna----------Y~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~ 285 (311)
T PF04642_consen 216 LDRMKEAEAQVNELEVSNIDLSAKLEPGKNA----------YLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAARTE 285 (311)
T ss_pred HHHHHHHHhhhhheecccHHHHHhhcCCcch----------HHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3566777777777777776666544333322 111111112223445555666655544322 4455
Q ss_pred HHHHHHHHHhhHH
Q 037185 306 EVAELKIALSDAE 318 (533)
Q Consensus 306 EIr~LK~~lsDAe 318 (533)
|-++.+..+.|-.
T Consensus 286 errkvraqf~dfs 298 (311)
T PF04642_consen 286 ERRKVRAQFHDFS 298 (311)
T ss_pred HHHHHHHHHHHhH
Confidence 5555555555544
No 464
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.94 E-value=1.8e+02 Score=27.89 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK 420 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK 420 (533)
...+...+++|+.+.+++|...+++++.||...+.|..|-
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677888888888888888888888888887777664
No 465
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.54 E-value=7.1e+02 Score=28.15 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=36.7
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 324 DKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 324 EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
+-+.+.+|.-.|..+...|...|++++.+-..+-..+..++..+.+...
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888999999999998777777777777777766655443
No 466
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=32.52 E-value=47 Score=31.07 Aligned_cols=44 Identities=27% Similarity=0.384 Sum_probs=33.0
Q ss_pred HHHHHHhh-cccccccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 037185 21 KQMQKLIE-DGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKN 69 (533)
Q Consensus 21 k~mlklie-d~dSfak~~RpeLi~~vee~yr~yraLAeryd~~~~el~~~ 69 (533)
..|..||+ ++.|=+. |- .+|+-|+|.||+.+..|-+-|..-+.+
T Consensus 58 ~~M~~Ll~aE~p~~~r--R~---rl~~aFNrGYr~~~~~Y~~Ct~aA~~A 102 (121)
T TIGR02301 58 SRMQALIDAETADEER--RA---RMTAAFNRGYRSFASTYTRCTPAATKA 102 (121)
T ss_pred HHHHHHHHhhCCChhH--HH---HHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 57888999 7665433 32 467999999999999998877665444
No 467
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.25 E-value=2e+02 Score=31.40 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhh
Q 037185 247 EIERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 247 s~~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
..+++..+...-++++.+++.++.
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~ 49 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQA 49 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666555
No 468
>PHA03332 membrane glycoprotein; Provisional
Probab=32.21 E-value=7.8e+02 Score=30.99 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK 477 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~ 477 (533)
-|..+|+.|+.+..-+-.+-.=.+.+.+.+++=+.+++.| |--+++|+++=-+.- +....++...|..++.
T Consensus 899 aIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgR---Is~Led~VN~r~~~v------~~~intLA~ql~~~~~ 969 (1328)
T PHA03332 899 KIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGR---VSDLEDQVNLRFLAV------ATNFNTLATQLKELGT 969 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhccc---HHHHHHHHHHHHHHH------HHHHHHHHHHhhhhhh
Confidence 4444555555554433333333333444444434444433 444555555432222 2344445555666666
Q ss_pred HHHHHHHHHHH
Q 037185 478 ELENEVDRQRM 488 (533)
Q Consensus 478 eLE~Eve~Q~~ 488 (533)
++-+.++++..
T Consensus 970 ~~N~~ie~~~a 980 (1328)
T PHA03332 970 TTNERIEEVMA 980 (1328)
T ss_pred hHHHHHHHHHH
Confidence 66666666543
No 469
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=32.15 E-value=7.7e+02 Score=27.71 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIM 406 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~i 406 (533)
.+..|+....+.+++|++.+.. |+++++.=+. ==.+.|.+|.+.-+.-=+.||--.
T Consensus 264 aileeL~eIk~~q~~Leesye~-------Lke~~krdy~-----------------fi~etLQEERyR~erLEEqLNdlt 319 (455)
T KOG3850|consen 264 AILEELREIKETQALLEESYER-------LKEQIKRDYK-----------------FIAETLQEERYRYERLEEQLNDLT 319 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566777777777888877777 6665554332 112345555555554445555222
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
+-+ -++|.||+-+..+ ||+.+-=.++|.+.=|-+ .++-+..|++.||..-..|
T Consensus 320 eLq--------------QnEi~nLKqElas-------meervaYQsyERaRdIqE------alEscqtrisKlEl~qq~q 372 (455)
T KOG3850|consen 320 ELQ--------------QNEIANLKQELAS-------MEERVAYQSYERARDIQE------ALESCQTRISKLELQQQQQ 372 (455)
T ss_pred HHH--------------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 222 2333444444333 333334556666544433 3566777888888777777
Q ss_pred HHHHhhhhh
Q 037185 487 RMVILDAAE 495 (533)
Q Consensus 487 ~~~i~e~aE 495 (533)
.++-+++-+
T Consensus 373 qv~Q~e~~~ 381 (455)
T KOG3850|consen 373 QVVQLEGLE 381 (455)
T ss_pred HHHHHHhhh
Confidence 776666655
No 470
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=2.8e+02 Score=29.72 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHH
Q 037185 334 CLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEV 392 (533)
Q Consensus 334 kL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El 392 (533)
+|-+....|.+++.+ +..-+..+.++-++...+..+|+.+|-.++..|+.-+
T Consensus 119 k~e~~k~~Ld~~~~~-------~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~ 170 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDK-------AAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTL 170 (300)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777 3444444444444444455556666665555555433
No 471
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.87 E-value=1e+03 Score=29.09 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=27.6
Q ss_pred hHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 355 ALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 355 ~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
..++.+|+|+.+-.- -|...++.-+.+..+-+++...+--.+..|
T Consensus 787 a~na~Lrrl~~~Iig----------~m~~~k~~~~a~~~e~~ael~~ipey~~rL 831 (1104)
T COG4913 787 AVNARLRRLREEIIG----------RMSDAKKEDTAALSEVGAELDDIPEYLARL 831 (1104)
T ss_pred hhHHHHHHHHHHHHH----------HHHHHHhcchhhhhhhccCHhHHHHHHHHH
Confidence 367777777764332 345555666666666677776666666555
No 472
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=31.80 E-value=6e+02 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=16.9
Q ss_pred HHHHHHHHhh--chhhhhHHHHHHHHHHhhH
Q 037185 289 FQERIAKVET--NLSDRNNEVAELKIALSDA 317 (533)
Q Consensus 289 Lqeri~~lkt--~Ls~~d~EIr~LK~~lsDA 317 (533)
|..|+..+.. +|.....++.+|...+++.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p 42 (364)
T TIGR00020 12 LTSRLDTVRGSLDPEKKKARLEELEKEMEDP 42 (364)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCC
Confidence 4445555543 3446666777777777653
No 473
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.79 E-value=5.7e+02 Score=26.10 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHH----HHHHHHHHHhhhhhHHHH
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQAL----LDARLKEWELQGKALEDK 359 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~----Le~kL~e~e~~~~~lEde 359 (533)
-.|-+|...|..++..|...-.+++++|.++.+|-++ .++-+-|+..|+..... ==++|.++
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~----Rs~sQrEvn~LLqRK~sWs~~DleRFT~L---------- 97 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ----RSSSQREVNELLQRKHSWSPADLERFTEL---------- 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccCCChHHHHHHHHH----------
Confidence 5677888888888888999999999999999999887 67888899888887543 12235542
Q ss_pred HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHhHHhHHHHHHHHHHHHHHhhhhh
Q 037185 360 IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL-KLKYDMLMAEKDEINAKVNTLMAEARSRD 438 (533)
Q Consensus 360 irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L-k~k~e~L~~EK~~l~~kv~~L~ad~~sRd 438 (533)
+. ..+.+.++...++..+.+-+...+.++.++-.- -.+|- |= .-+-
T Consensus 98 ----yr-----------~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYH----EE--------------QiWS 144 (207)
T PF05546_consen 98 ----YR-----------NDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYH----EE--------------QIWS 144 (207)
T ss_pred ----HH-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------------HHHH
Confidence 11 334455555666666666666666665333322 11110 11 1222
Q ss_pred hhhhhHHHH-------HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 439 NHIGQIEEH-------SRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 439 ~~I~qme~h-------l~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
++|..+.-- +|=|-+--+.++.+-=--+++|.....+|+....++...
T Consensus 145 DKIRr~STwgT~~lmgvNvllFl~~~~~~EPwkRrRLv~~fe~~v~~~l~~~~~~ 199 (207)
T PF05546_consen 145 DKIRRASTWGTWGLMGVNVLLFLVAQLLVEPWKRRRLVKSFEEKVKEALEEVRQE 199 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332221 333445555555555555666666667776666655433
No 474
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.66 E-value=1.1e+02 Score=32.87 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=28.0
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIA 313 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ 313 (533)
+..|+.+++.++++++.+.++++.-. |.+.+++.++.++.-.+.+|.++++-
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555553333 44555555566565555566655543
No 475
>PRK15396 murein lipoprotein; Provisional
Probab=31.49 E-value=2e+02 Score=24.98 Aligned_cols=46 Identities=13% Similarity=0.301 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 037185 385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTL 430 (533)
Q Consensus 385 ie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L 430 (533)
+++|..++......+..+..+++.++.....-..|-.-.|.+|+|.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555555543
No 476
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.24 E-value=8.1e+02 Score=27.69 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHH-HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhH
Q 037185 247 EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLK-FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDK 325 (533)
Q Consensus 247 s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~k-Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EK 325 (533)
+.+++..+.+.|.+|+..|-.+-..-.++..-+++-++...- --.++.-++--+..++..+..|++.+-+ +|||
T Consensus 171 d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~-----sPeK 245 (446)
T KOG4438|consen 171 DEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQ-----SPEK 245 (446)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHH
Confidence 446777788888888888877777666776666666543322 1223333333344555555557777664 4444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
|+.=|.++....+....-+.++...-..+++++--+.+
T Consensus 246 --L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qt 283 (446)
T KOG4438|consen 246 --LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQT 283 (446)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 33344444444445555566655555566666655555
No 477
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=31.24 E-value=4.4e+02 Score=25.50 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=34.3
Q ss_pred HHHHHhhhhhHHHHHhhhhhHHHHhhhhHH-HHHHHHHHHHHHHHHhhchh
Q 037185 252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDY-ERMQVLKFQERIAKVETNLS 301 (533)
Q Consensus 252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~-e~~ev~kLqeri~~lkt~Ls 301 (533)
..+...+..+.-.|..-+.+++.++. |+. .+-.+-+|++++..|+.+|.
T Consensus 57 ~~~~~~v~~~~~~i~~k~~El~~L~~-~d~~kv~~~E~L~d~v~eLkeel~ 106 (146)
T PF05852_consen 57 CEIKNKVSSLETEISEKKKELSHLKK-FDRKKVEDLEKLTDRVEELKEELE 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667777777777888888887 544 34667888888888887543
No 478
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=30.43 E-value=3.7e+02 Score=27.79 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e 348 (533)
.++-+|..|-+.|.+|..+|..
T Consensus 232 k~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 232 KMKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999875
No 479
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.35 E-value=1.2e+02 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=18.1
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVE 297 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lk 297 (533)
...+.++.+++.++..+..|.... .+...+.+.|..+.
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~----~e~~~~~~~l~~l~ 43 (129)
T cd00584 6 AQLQVLQQEIEELQQELARLNEAI----AEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 344455555555555444444433 44444445555554
No 480
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.08 E-value=2.6e+02 Score=30.43 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQ 362 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirq 362 (533)
.+.++......|..+++++..+...+++++..
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555533333334444333
No 481
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=30.07 E-value=3.3e+02 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 412 KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 412 k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
++..+..+.+.+.+.+..=+..+-.|++++..|+..-..|....
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a 47 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNA 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHh
Confidence 45566667777777777777778899999977777666655444
No 482
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=29.98 E-value=9.7e+02 Score=28.20 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHH
Q 037185 300 LSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEK 338 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~ 338 (533)
++..+..+..+...+.+..+.+...+....+.+..+..-
T Consensus 109 ~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~ 147 (670)
T KOG0239|consen 109 LSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLEL 147 (670)
T ss_pred ccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHH
Confidence 334444444455555555555554444444444444433
No 483
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=29.97 E-value=4e+02 Score=23.76 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e 348 (533)
...+.+++.+...+..+|..
T Consensus 2 s~~~~~~~~~~~~l~~~L~~ 21 (106)
T PF05837_consen 2 SLEILNLQQESRSLQEKLSD 21 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776
No 484
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.95 E-value=3.9e+02 Score=23.61 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=17.3
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
++..|..+..+|+.|-..-..+|..|
T Consensus 47 ~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 47 QREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766666565554
No 485
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=29.83 E-value=57 Score=29.42 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=32.6
Q ss_pred HHHHHHhh-cccccccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 037185 21 KQMQKLIE-DGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKN 69 (533)
Q Consensus 21 k~mlklie-d~dSfak~~RpeLi~~vee~yr~yraLAeryd~~~~el~~~ 69 (533)
..|..||+ ++-+= .+|- .+|+-|++.||+.+..|-.-|..-+.+
T Consensus 33 ~~M~~Ll~~E~p~~--~rR~---rl~~aFN~GYr~~~~~Y~~Ct~~A~~A 77 (96)
T PF09539_consen 33 DRMQALLDAEAPDE--ARRA---RLIAAFNRGYRAFSSVYRTCTPAAREA 77 (96)
T ss_pred HHHHHHHHhcCCCH--HHHH---HHHHHHHHHHHHHhHhhccCCHHHHHH
Confidence 56888888 66554 3332 468899999999999998877665544
No 486
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.40 E-value=1.8e+02 Score=25.36 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhhHHHH-------------------------HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhh
Q 037185 268 AQDDVTTLNAKLDYER-------------------------MQVLKFQERIAKVETNLSDRNNEVAELKIALSD 316 (533)
Q Consensus 268 ~q~e~a~~k~Kle~e~-------------------------~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD 316 (533)
++.||..+..+|..|+ ..+.+|-.-|+.++..+..++..|.+|...+.+
T Consensus 13 LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 13 LEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.28 E-value=7.3e+02 Score=26.54 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhchhh
Q 037185 284 MQVLKFQERIAKVETNLSD 302 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~ 302 (533)
..++.|..||+.|++-|..
T Consensus 209 a~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5566777777777776664
No 488
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.18 E-value=6.9e+02 Score=26.21 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=6.2
Q ss_pred HHHHHHHHhhHHhh
Q 037185 307 VAELKIALSDAEEK 320 (533)
Q Consensus 307 Ir~LK~~lsDAeeK 320 (533)
+.+++..|-..++|
T Consensus 65 l~~ak~eLqe~eek 78 (258)
T PF15397_consen 65 LQQAKAELQEWEEK 78 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 489
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.12 E-value=8.9e+02 Score=27.50 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhHHHH
Q 037185 443 QIEEHSRKLHMEHAELIAASESSRKL 468 (533)
Q Consensus 443 qme~hl~qL~~e~~~l~~~~~~~~~~ 468 (533)
.+..+|.+|.--..++..++.++.+.
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~A 194 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRA 194 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444555444444333
No 490
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=29.08 E-value=8e+02 Score=26.92 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=59.1
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhh---------hHHHH
Q 037185 213 VNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAK---------LDYER 283 (533)
Q Consensus 213 l~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~K---------le~e~ 283 (533)
..|.+.=+.-++.=|+.|- ..-+...+.|..+++.+..+..++- +.+...++.| .+-.+
T Consensus 155 q~Iaqailkqse~lIN~Ls-----~rAr~dt~r~Ae~eV~~~eerv~kA-------s~~L~~yr~kngvfdp~~qaevq~ 222 (372)
T COG3524 155 QKIAQAILKQSEKLINQLS-----ERARRDTVRFAEEEVQKAEERVKKA-------SNDLTDYRIKNGVFDPKAQAEVQM 222 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHhhcCccChhhhhHHHH
Confidence 4566666666666666664 2222333445555555444444444 4444444433 34444
Q ss_pred HHHHHHHHHHHHHhhchhh-------hhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185 284 MQVLKFQERIAKVETNLSD-------RNNEVAELKIALSDAEEKFTLDKAQLQS 330 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~-------~d~EIr~LK~~lsDAeeK~s~EKa~l~a 330 (533)
.-|++||..+....|+|.. -.-+|.-|++........+..|+..+.+
T Consensus 223 ~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isa 276 (372)
T COG3524 223 SLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISA 276 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcC
Confidence 6678888888887777762 2335566666666555555566655544
No 491
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=29.03 E-value=4.2e+02 Score=23.65 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKL 411 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~ 411 (533)
+..+...++.++......|..++.....|..
T Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (213)
T cd00176 144 LLKKHKELEEELEAHEPRLKSLNELAEELLE 174 (213)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544444433
No 492
>PRK02793 phi X174 lysis protein; Provisional
Probab=28.97 E-value=2.8e+02 Score=23.34 Aligned_cols=17 Identities=41% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhhHH
Q 037185 341 LLDARLKEWELQGKALE 357 (533)
Q Consensus 341 ~Le~kL~e~e~~~~~lE 357 (533)
.++.+|.++|.+.-+.|
T Consensus 5 ~~e~Ri~~LE~~lafQe 21 (72)
T PRK02793 5 SLEARLAELESRLAFQE 21 (72)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555333333333
No 493
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=28.08 E-value=4.7e+02 Score=23.90 Aligned_cols=137 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 376 AQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 376 ~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
.+..+|-.--+.+.. .+..=..+..++..++.+......|...--.....+..+.+.+..+=..++.+......+.-+.
T Consensus 7 ~eL~~Ll~d~~~l~~-~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~ 85 (150)
T PF07200_consen 7 EELQELLSDEEKLDA-FVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQ 85 (150)
T ss_dssp HHHHHHHHH-HHHHH-HGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHH-HHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHcCCCC
Q 037185 456 AELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKR 527 (533)
Q Consensus 456 ~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~GhKR 527 (533)
-.+ ...-+..-+...|+.-+.+.|.+=+.--....+|. ..+|-|=..|...|... |.|
T Consensus 86 ~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~-----------~d~~~Fl~~f~~~R~~y--H~R 143 (150)
T PF07200_consen 86 DEL-SSNYSPDALLARLQAAASEAEEESEELAEEFLDGE-----------IDVDDFLKQFKEKRKLY--HLR 143 (150)
T ss_dssp HHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSH-----------HHHHHHHHHHHHHHHHH--HHH
T ss_pred HHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHHHHH--HHH
No 494
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=27.95 E-value=3.7e+02 Score=22.68 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185 420 KDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKRE 499 (533)
Q Consensus 420 K~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKRE 499 (533)
.+.|=.+|...++.++..|.++...-..+.+.. .+.+.........- .....+-.++...-..+...+++|-.
T Consensus 10 ~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~I~~~~~~~~~l~deKv~ 82 (105)
T PF12998_consen 10 LENLPAELQRNLTLIRELDAKSQDLLEELDQQI---QKFIKNHGSPSLSP----EKRRELLKEIQEEYERALELSDEKVA 82 (105)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTCTTS--S-H----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHhhcccccCCh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777544444443333 33333332210001 13333444555556678889999999
Q ss_pred HHHHHhhhhHhhhhhH
Q 037185 500 AIRQLCFSLEHYRSGY 515 (533)
Q Consensus 500 AIRQLCfslehyr~~y 515 (533)
-+-|.|..|++|-.+-
T Consensus 83 lA~~~~d~v~~hi~rL 98 (105)
T PF12998_consen 83 LAQQAYDLVDRHIRRL 98 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986543
No 495
>PLN02320 seryl-tRNA synthetase
Probab=27.53 E-value=2.8e+02 Score=31.47 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 037185 328 LQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e 348 (533)
|.+++..|.++...|+..+.+
T Consensus 135 l~~~~k~lk~~i~~le~~~~~ 155 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVK 155 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 496
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.42 E-value=7.9e+02 Score=26.32 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCchhhhHHhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhh---------------------
Q 037185 154 MDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRD--------------------- 212 (533)
Q Consensus 154 i~~~~~~e~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~d--------------------- 212 (533)
|..+.+.-.....-......+.+--+++-.+...|+.+-=|..+++.++.++..+.+.|
T Consensus 1 i~Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~ 80 (355)
T PF09766_consen 1 IALKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISD 80 (355)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccc
Q ss_pred --------hhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHH
Q 037185 213 --------VNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERM 284 (533)
Q Consensus 213 --------l~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ 284 (533)
|+..-..|+.+-.+...|..++++|.+....|. .++.+-...+.+|...|+.+.+-+.-....|..-..
T Consensus 81 ~~~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~---~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~~ 157 (355)
T PF09766_consen 81 PELTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQ---QENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPHT 157 (355)
T ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcc
Q ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchh
Q 037185 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLD 324 (533)
Q Consensus 285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~E 324 (533)
...+....+..|=.=|-.+...+..++++.-+ .|..+
T Consensus 158 ~~~~~~~~a~~LP~PLyvLY~ql~ay~ea~~~---~~~v~ 194 (355)
T PF09766_consen 158 KKRKQHELAELLPPPLYVLYSQLQAYQEAFDD---SIDVE 194 (355)
T ss_pred chhhhHHHHHhCCccHHHHHHHHHHHHHHhcC---CceEE
No 497
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.35 E-value=6.3e+02 Score=25.12 Aligned_cols=122 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 037185 346 LKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINA 425 (533)
Q Consensus 346 L~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~ 425 (533)
...|..-..-....+.....-..-++. -.+...+.-+.=....++.+..|.+.+..++.+++.+....-..-.
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeL-------l~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~ 171 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLEL-------LSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE 171 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 426 KVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 426 kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
.+ ..++..|+..-..+...-.++-.....+...|.+|+.+..+++..++
T Consensus 172 ~~----------~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 172 EA----------GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred Hh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 498
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.33 E-value=2e+02 Score=29.30 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhh-------hhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185 247 EIERLMKELEGTH-------QLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR 303 (533)
Q Consensus 247 s~~ei~kl~E~ik-------~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~ 303 (533)
....+.++...+. +||.+|+.++.||+.++-.++.--.++..+++|=..+-.+|..|
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.04 E-value=3.4e+02 Score=29.59 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
++..|-.+-..+.+++..+.++...+-..+...-.+-..+...+.+++..|.+++..|+.++++ +++++..+
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~ 102 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA-------LEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
No 500
>PRK04325 hypothetical protein; Provisional
Probab=27.03 E-value=3.2e+02 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 037185 379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTL 430 (533)
Q Consensus 379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L 430 (533)
..|..-|..|-.-++=-+.-|+.||+.+......++.|......+..++..+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!