Query 037185
Match_columns 533
No_of_seqs 98 out of 100
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.3 2.2E-07 7.6E-12 83.5 40.1 31 169-199 3-33 (284)
2 1i84_S Smooth muscle myosin he 99.0 7.3E-10 2.5E-14 126.6 9.9 49 438-486 1087-1135(1184)
3 1i84_S Smooth muscle myosin he 98.9 2E-09 6.9E-14 123.0 8.7 21 176-196 861-881 (1184)
4 3o0z_A RHO-associated protein 97.8 0.0016 5.6E-08 61.2 19.3 110 171-315 5-114 (168)
5 3na7_A HP0958; flagellar bioge 97.8 0.0017 6E-08 62.8 19.7 98 249-348 18-115 (256)
6 2v71_A Nuclear distribution pr 97.6 0.0044 1.5E-07 59.1 18.8 72 249-320 49-124 (189)
7 3vkg_A Dynein heavy chain, cyt 97.4 0.018 6.3E-07 72.7 25.3 135 230-365 1915-2049(3245)
8 2dfs_A Myosin-5A; myosin-V, in 97.3 0.0061 2.1E-07 70.2 18.9 30 289-318 926-955 (1080)
9 3na7_A HP0958; flagellar bioge 97.3 0.053 1.8E-06 52.4 22.7 113 300-434 13-127 (256)
10 2v71_A Nuclear distribution pr 97.1 0.029 9.8E-07 53.6 17.3 125 217-368 9-133 (189)
11 2dfs_A Myosin-5A; myosin-V, in 96.9 0.013 4.4E-07 67.5 15.8 92 333-431 917-1018(1080)
12 3oja_B Anopheles plasmodium-re 96.6 0.017 5.8E-07 60.2 12.4 65 284-348 463-527 (597)
13 2efr_A General control protein 96.5 0.37 1.3E-05 44.7 19.6 55 253-314 74-128 (155)
14 3o0z_A RHO-associated protein 96.2 0.84 2.9E-05 43.0 20.2 47 392-438 92-138 (168)
15 3vkg_A Dynein heavy chain, cyt 95.9 1.1 3.8E-05 57.3 25.4 40 388-427 2026-2065(3245)
16 1x79_B RAB GTPase binding effe 95.8 0.087 3E-06 46.8 11.3 71 275-345 36-106 (112)
17 2fxo_A Myosin heavy chain, car 95.6 0.51 1.7E-05 41.7 15.3 96 249-369 13-108 (129)
18 2efr_A General control protein 95.5 1.5 5.1E-05 40.6 20.8 16 261-276 26-41 (155)
19 2v66_B Nuclear distribution pr 95.1 0.32 1.1E-05 43.0 12.4 93 256-348 3-102 (111)
20 3oja_B Anopheles plasmodium-re 94.9 0.2 7E-06 52.1 12.4 41 307-347 440-480 (597)
21 3tnu_B Keratin, type II cytosk 94.6 0.54 1.8E-05 41.4 12.5 102 289-429 20-121 (129)
22 2fxo_A Myosin heavy chain, car 94.5 2.4 8.1E-05 37.4 17.6 45 328-372 11-55 (129)
23 3tnu_A Keratin, type I cytoske 94.3 0.46 1.6E-05 42.0 11.5 75 327-429 49-123 (131)
24 3ol1_A Vimentin; structural ge 93.6 1.4 5E-05 38.6 13.2 86 223-343 18-103 (119)
25 3ghg_A Fibrinogen alpha chain; 93.3 0.95 3.2E-05 49.1 13.6 132 370-524 51-191 (562)
26 2v66_B Nuclear distribution pr 93.1 1.5 5.1E-05 38.8 12.4 72 292-363 4-75 (111)
27 4gkw_A Spindle assembly abnorm 92.9 5.7 0.0002 36.6 19.0 89 251-348 13-102 (167)
28 3swk_A Vimentin; cytoskeleton, 92.3 1.1 3.6E-05 37.6 9.9 69 256-342 14-82 (86)
29 3tnu_B Keratin, type II cytosk 91.8 1.4 4.9E-05 38.7 10.7 64 283-346 35-98 (129)
30 3u1c_A Tropomyosin alpha-1 cha 91.5 2.8 9.6E-05 35.8 11.9 90 254-343 7-99 (101)
31 3tnu_A Keratin, type I cytoske 91.4 1.4 4.8E-05 38.9 10.3 66 282-347 36-101 (131)
32 1d7m_A Cortexillin I; coiled-c 90.9 5.1 0.00017 34.7 12.6 73 284-367 25-97 (101)
33 3s4r_A Vimentin; alpha-helix, 90.8 1.6 5.3E-05 37.1 9.5 76 339-435 11-87 (93)
34 2ocy_A RAB guanine nucleotide 90.7 10 0.00036 35.2 15.8 13 325-337 53-65 (154)
35 2eqb_B RAB guanine nucleotide 88.8 7.6 0.00026 33.7 12.3 88 405-492 6-94 (97)
36 3swk_A Vimentin; cytoskeleton, 88.7 2.2 7.7E-05 35.6 8.7 39 306-348 1-39 (86)
37 3hnw_A Uncharacterized protein 88.5 2.4 8.3E-05 38.3 9.5 47 256-302 89-135 (138)
38 3u59_A Tropomyosin beta chain; 88.0 6.5 0.00022 33.3 11.4 66 255-320 8-73 (101)
39 3mq7_A Bone marrow stromal ant 87.9 6.4 0.00022 35.4 11.5 65 255-319 24-92 (121)
40 1deq_A Fibrinogen (alpha chain 87.5 6.4 0.00022 41.3 13.0 99 371-483 55-157 (390)
41 3s4r_A Vimentin; alpha-helix, 87.2 4.4 0.00015 34.3 9.7 35 331-365 10-44 (93)
42 1ic2_A Tropomyosin alpha chain 85.8 4.7 0.00016 32.9 8.9 67 254-320 4-70 (81)
43 3i00_A HIP-I, huntingtin-inter 85.5 6.4 0.00022 35.0 10.3 70 393-479 11-80 (120)
44 2eqb_B RAB guanine nucleotide 84.9 14 0.00047 32.1 11.7 61 330-394 5-65 (97)
45 2v4h_A NF-kappa-B essential mo 84.9 3.4 0.00012 36.6 8.1 45 265-309 64-108 (110)
46 3ol1_A Vimentin; structural ge 84.6 15 0.00052 32.0 12.2 60 374-433 18-77 (119)
47 1wt6_A Myotonin-protein kinase 84.4 3.6 0.00012 34.7 7.7 41 325-365 26-66 (81)
48 3hnw_A Uncharacterized protein 84.1 5.5 0.00019 36.0 9.3 11 256-266 75-85 (138)
49 3bas_A Myosin heavy chain, str 83.4 11 0.00037 31.4 10.3 74 330-435 14-87 (89)
50 2b9c_A Striated-muscle alpha t 83.2 11 0.00036 34.5 10.9 28 253-280 49-76 (147)
51 3q8t_A Beclin-1; autophagy, AT 83.1 21 0.0007 30.4 12.2 43 326-368 7-49 (96)
52 1x79_B RAB GTPase binding effe 81.9 11 0.00036 33.5 10.0 89 250-348 7-95 (112)
53 2b9c_A Striated-muscle alpha t 81.6 3.9 0.00013 37.3 7.4 21 172-192 52-72 (147)
54 1ic2_A Tropomyosin alpha chain 81.1 18 0.00061 29.5 10.5 28 169-196 3-30 (81)
55 2e7s_A RAB guanine nucleotide 80.1 7.5 0.00026 35.5 8.7 32 380-411 100-131 (135)
56 1gk4_A Vimentin; intermediate 79.0 19 0.00064 29.7 10.1 73 330-430 1-73 (84)
57 3bas_A Myosin heavy chain, str 78.7 24 0.00083 29.3 10.8 15 334-348 67-81 (89)
58 2jee_A YIIU; FTSZ, septum, coi 78.3 13 0.00044 31.3 8.9 24 379-402 51-74 (81)
59 3oja_A Leucine-rich immune mol 77.7 38 0.0013 34.5 14.2 41 380-420 439-479 (487)
60 3ni0_A Bone marrow stromal ant 77.6 12 0.0004 32.7 8.6 57 255-318 31-87 (99)
61 2e7s_A RAB guanine nucleotide 77.6 17 0.00058 33.2 10.2 61 379-452 70-130 (135)
62 4h22_A Leucine-rich repeat fli 77.3 8.4 0.00029 33.8 7.8 63 380-442 27-89 (103)
63 1x8y_A Lamin A/C; structural p 77.1 10 0.00035 31.5 8.0 73 330-430 3-75 (86)
64 3u59_A Tropomyosin beta chain; 76.6 33 0.0011 28.9 13.3 27 381-407 49-75 (101)
65 1m1j_A Fibrinogen alpha subuni 76.3 47 0.0016 35.8 14.5 78 432-524 100-192 (491)
66 3u1c_A Tropomyosin alpha-1 cha 76.1 36 0.0012 28.9 13.3 14 381-394 49-62 (101)
67 1m1j_B Fibrinogen beta chain; 75.9 34 0.0012 36.6 13.5 24 427-450 123-146 (464)
68 3mq9_A Bone marrow stromal ant 73.1 49 0.0017 33.5 13.5 40 288-327 401-440 (471)
69 3mq9_A Bone marrow stromal ant 73.1 71 0.0024 32.3 14.7 36 397-432 397-432 (471)
70 4hpq_C ATG17, KLTH0D15642P; au 72.6 99 0.0034 32.5 22.8 28 493-520 316-343 (413)
71 3mov_A Lamin-B1; LMNB1, B-type 70.5 18 0.00061 30.8 8.1 46 377-429 38-83 (95)
72 3jsv_C NF-kappa-B essential mo 70.1 10 0.00036 32.7 6.5 50 263-312 40-89 (94)
73 3efg_A Protein SLYX homolog; x 69.7 7.3 0.00025 32.2 5.3 51 288-349 11-61 (78)
74 3swy_A Cyclic nucleotide-gated 68.8 12 0.0004 28.6 5.8 43 438-483 4-46 (46)
75 3mq7_A Bone marrow stromal ant 68.8 38 0.0013 30.4 10.0 60 289-348 30-89 (121)
76 3i00_A HIP-I, huntingtin-inter 68.7 24 0.00081 31.4 8.8 52 435-489 11-62 (120)
77 3trt_A Vimentin; cytoskeleton, 68.5 37 0.0012 26.9 9.1 70 401-487 6-76 (77)
78 2zqm_A Prefoldin beta subunit 64.9 30 0.001 28.8 8.4 39 334-372 10-48 (117)
79 2nr5_A Hypothetical protein SO 64.7 5.6 0.00019 31.7 3.5 36 490-525 17-63 (67)
80 3nmd_A CGMP dependent protein 64.3 11 0.00039 31.1 5.4 31 285-315 34-64 (72)
81 2jee_A YIIU; FTSZ, septum, coi 63.7 66 0.0023 27.1 10.2 23 409-431 53-75 (81)
82 2zqm_A Prefoldin beta subunit 63.0 65 0.0022 26.7 10.5 14 334-347 24-37 (117)
83 4gkw_A Spindle assembly abnorm 62.4 98 0.0033 28.6 16.2 63 234-299 100-162 (167)
84 2w83_C C-JUN-amino-terminal ki 61.2 41 0.0014 28.2 8.2 31 398-428 24-54 (77)
85 2lw1_A ABC transporter ATP-bin 59.4 34 0.0011 28.2 7.5 31 281-318 19-49 (89)
86 1l8d_A DNA double-strand break 59.4 76 0.0026 26.4 11.8 21 328-348 15-35 (112)
87 2no2_A HIP-I, huntingtin-inter 59.0 89 0.003 27.0 13.1 43 383-425 54-96 (107)
88 3c3g_A Alpha/beta peptide with 58.5 14 0.0005 26.5 4.3 31 407-437 3-33 (33)
89 1m1j_B Fibrinogen beta chain; 58.3 1.7E+02 0.0057 31.4 14.4 22 466-487 174-195 (464)
90 3cvf_A Homer-3, homer protein 57.5 62 0.0021 27.0 8.7 18 353-370 8-25 (79)
91 2oxj_A Hybrid alpha/beta pepti 57.0 15 0.00052 26.5 4.2 31 407-437 4-34 (34)
92 3c3f_A Alpha/beta peptide with 56.8 16 0.00054 26.4 4.3 31 407-437 4-34 (34)
93 3swf_A CGMP-gated cation chann 56.7 30 0.001 28.8 6.6 47 437-486 5-51 (74)
94 4dzn_A Coiled-coil peptide CC- 55.9 16 0.00054 25.8 4.1 28 383-410 2-29 (33)
95 2yy0_A C-MYC-binding protein; 54.3 18 0.00061 27.9 4.7 31 397-427 19-49 (53)
96 3haj_A Human pacsin2 F-BAR; pa 54.0 1.5E+02 0.0052 30.8 13.1 104 256-359 136-239 (486)
97 3a7p_A Autophagy protein 16; c 52.6 44 0.0015 31.1 7.8 17 394-410 93-109 (152)
98 3mov_A Lamin-B1; LMNB1, B-type 52.1 31 0.001 29.4 6.2 49 299-347 13-61 (95)
99 2k48_A Nucleoprotein; viral pr 52.0 41 0.0014 29.7 7.1 68 249-318 35-102 (107)
100 3cvf_A Homer-3, homer protein 51.0 66 0.0023 26.9 7.9 31 328-365 11-41 (79)
101 3oja_A Leucine-rich immune mol 49.7 2.2E+02 0.0076 28.8 15.5 28 465-492 433-460 (487)
102 1gk4_A Vimentin; intermediate 49.3 1.1E+02 0.0037 25.1 9.0 39 307-345 10-48 (84)
103 2pms_C Pneumococcal surface pr 49.1 89 0.003 28.2 9.0 72 169-243 10-86 (125)
104 2i1j_A Moesin; FERM, coiled-co 48.9 12 0.0004 40.5 3.9 16 511-526 550-565 (575)
105 3m48_A General control protein 48.0 17 0.00058 26.1 3.3 30 408-437 4-33 (33)
106 1jcd_A Major outer membrane li 47.7 50 0.0017 25.6 6.2 40 388-427 9-48 (52)
107 3a7p_A Autophagy protein 16; c 47.6 97 0.0033 28.8 9.2 48 380-427 72-119 (152)
108 1gd2_E Transcription factor PA 47.3 26 0.00089 28.5 4.8 41 437-484 27-67 (70)
109 1x8y_A Lamin A/C; structural p 47.2 66 0.0023 26.6 7.4 30 310-339 15-44 (86)
110 2w83_C C-JUN-amino-terminal ki 46.6 77 0.0026 26.6 7.6 35 321-362 42-76 (77)
111 2oto_A M protein; helical coil 45.9 1.6E+02 0.0056 26.2 18.2 53 379-431 25-77 (155)
112 2bni_A General control protein 45.7 19 0.00066 26.0 3.3 31 407-437 4-34 (34)
113 3ni0_A Bone marrow stromal ant 45.1 1.1E+02 0.0036 26.8 8.4 65 256-320 18-82 (99)
114 2v4h_A NF-kappa-B essential mo 45.0 1.7E+02 0.0057 26.0 11.7 34 400-433 72-105 (110)
115 2oqq_A Transcription factor HY 45.0 39 0.0013 25.5 5.0 36 300-346 5-40 (42)
116 1m1j_C Fibrinogen gamma chain; 44.2 2.4E+02 0.0083 29.5 12.7 15 356-370 43-57 (409)
117 1go4_E MAD1 (mitotic arrest de 43.9 19 0.00066 31.3 3.7 33 397-429 12-44 (100)
118 2wt7_B Transcription factor MA 43.6 34 0.0012 29.2 5.2 21 396-416 68-88 (90)
119 3cve_A Homer protein homolog 1 43.6 1.4E+02 0.0046 24.6 9.3 17 332-348 9-25 (72)
120 2yy0_A C-MYC-binding protein; 42.5 29 0.00098 26.8 4.1 32 383-414 19-50 (53)
121 1deq_A Fibrinogen (alpha chain 42.4 2.2E+02 0.0074 30.1 11.9 19 302-320 64-82 (390)
122 1gd2_E Transcription factor PA 42.4 38 0.0013 27.5 5.1 41 394-434 26-66 (70)
123 1m1j_A Fibrinogen alpha subuni 41.2 2.2E+02 0.0074 30.8 11.8 20 374-393 56-75 (491)
124 3trt_A Vimentin; cytoskeleton, 41.1 69 0.0024 25.3 6.4 44 373-416 32-75 (77)
125 2wq1_A General control protein 40.9 40 0.0014 24.3 4.3 31 407-437 3-33 (33)
126 2pms_C Pneumococcal surface pr 40.7 1.5E+02 0.0052 26.7 9.1 26 224-249 12-37 (125)
127 1go4_E MAD1 (mitotic arrest de 40.4 52 0.0018 28.6 5.9 12 256-267 33-44 (100)
128 3ghg_A Fibrinogen alpha chain; 39.7 4.2E+02 0.014 29.2 15.8 70 401-487 61-130 (562)
129 1l8d_A DNA double-strand break 39.2 1.6E+02 0.0056 24.3 11.4 12 470-481 81-92 (112)
130 4emc_A Monopolin complex subun 38.9 1E+02 0.0034 29.6 8.1 38 284-321 20-57 (190)
131 4etp_A Kinesin-like protein KA 38.9 64 0.0022 33.3 7.4 55 377-431 4-58 (403)
132 2x3v_A Syndapin I, protein kin 38.8 2.8E+02 0.0094 26.8 14.8 91 258-348 136-226 (337)
133 4etp_A Kinesin-like protein KA 38.6 66 0.0023 33.2 7.5 53 249-301 10-62 (403)
134 1f5n_A Interferon-induced guan 38.5 3.4E+02 0.012 29.5 13.3 117 249-412 466-582 (592)
135 1m1j_C Fibrinogen gamma chain; 38.4 1.5E+02 0.005 31.2 10.0 31 286-316 86-116 (409)
136 3c9i_A Tail needle protein GP2 38.2 1.2E+02 0.0042 29.7 8.7 62 384-452 85-146 (242)
137 3abh_A Pacsin2, protein kinase 37.8 2.2E+02 0.0075 27.2 10.6 18 272-289 159-176 (312)
138 3azd_A Short alpha-tropomyosin 37.6 12 0.00043 26.9 1.3 31 249-279 4-34 (37)
139 1ci6_A Transcription factor AT 37.5 1.4E+02 0.0049 23.2 7.6 34 459-492 29-62 (63)
140 1ses_A Seryl-tRNA synthetase; 37.5 1.2E+02 0.0041 31.4 9.2 23 326-348 67-89 (421)
141 3c9i_A Tail needle protein GP2 37.3 2.9E+02 0.01 27.1 11.1 61 286-350 79-139 (242)
142 3aco_A Pacsin2, protein kinase 36.9 2.1E+02 0.0073 27.9 10.5 45 304-348 191-235 (350)
143 3jsv_C NF-kappa-B essential mo 36.8 1.3E+02 0.0045 26.0 7.7 25 317-341 62-86 (94)
144 1ses_A Seryl-tRNA synthetase; 36.6 75 0.0026 32.9 7.5 23 248-270 27-49 (421)
145 1fxk_C Protein (prefoldin); ar 36.4 2E+02 0.0069 24.5 12.1 41 253-297 5-45 (133)
146 2oto_A M protein; helical coil 35.9 2.4E+02 0.008 25.1 17.6 14 470-483 141-154 (155)
147 3a7o_A Autophagy protein 16; c 35.8 1.9E+02 0.0065 24.0 8.5 34 399-432 41-74 (75)
148 2ic6_A Nucleocapsid protein; h 35.2 96 0.0033 26.0 6.5 20 300-319 54-73 (78)
149 1kd8_B GABH BLL, GCN4 acid bas 35.1 57 0.0019 23.9 4.4 31 172-202 1-31 (36)
150 3nmd_A CGMP dependent protein 35.0 44 0.0015 27.6 4.3 29 390-418 33-61 (72)
151 1t2k_D Cyclic-AMP-dependent tr 34.8 1.1E+02 0.0038 23.4 6.5 26 272-298 11-36 (61)
152 2i1j_A Moesin; FERM, coiled-co 34.4 45 0.0015 36.0 5.6 28 377-404 413-440 (575)
153 4e61_A Protein BIM1; EB1-like 34.0 1.1E+02 0.0038 26.9 7.0 40 388-427 9-48 (106)
154 3viq_B Mating-type switching p 33.5 64 0.0022 27.4 5.2 25 324-348 2-26 (85)
155 1fxk_A Prefoldin; archaeal pro 33.0 2E+02 0.0068 23.4 9.4 25 290-314 78-102 (107)
156 3a7o_A Autophagy protein 16; c 32.2 1.3E+02 0.0045 25.0 6.7 53 292-348 19-71 (75)
157 2hy6_A General control protein 32.2 50 0.0017 23.9 3.7 31 407-437 4-34 (34)
158 2dq0_A Seryl-tRNA synthetase; 32.1 2.4E+02 0.0083 29.5 10.5 23 326-348 72-94 (455)
159 2p22_A Suppressor protein STP2 31.8 2.7E+02 0.0093 26.1 9.8 43 302-344 42-84 (174)
160 1fxk_A Prefoldin; archaeal pro 31.1 2.1E+02 0.0073 23.2 9.7 16 356-371 27-42 (107)
161 1a92_A Delta antigen; leucine 30.8 62 0.0021 25.1 4.3 33 165-197 7-39 (50)
162 2xnx_M M protein, M1-BC1; cell 30.8 1.9E+02 0.0065 26.7 8.3 13 356-368 92-104 (146)
163 3m9b_A Proteasome-associated A 30.8 41 0.0014 33.4 4.2 19 329-347 23-41 (251)
164 2ic9_A Nucleocapsid protein; h 30.4 1.1E+02 0.0038 26.5 6.3 20 300-319 54-73 (96)
165 1lq7_A Alpha3W; three helix bu 30.2 1.3E+02 0.0043 24.0 6.0 38 396-433 24-63 (67)
166 1wle_A Seryl-tRNA synthetase; 30.2 3E+02 0.01 29.4 10.9 23 326-348 119-141 (501)
167 3l4q_C Phosphatidylinositol 3- 30.1 3.5E+02 0.012 25.4 10.7 114 326-455 34-147 (170)
168 2q6q_A Spindle POLE BODY compo 29.6 1.5E+02 0.0053 24.5 6.6 58 256-320 10-67 (74)
169 1lwu_C Fibrinogen gamma chain; 29.5 87 0.003 31.9 6.4 28 288-315 9-36 (323)
170 3swf_A CGMP-gated cation chann 29.3 1.2E+02 0.0042 25.1 6.1 33 288-320 4-36 (74)
171 2wps_A Trimeric autotransporte 29.2 3E+02 0.01 24.3 13.8 97 341-490 3-99 (107)
172 1fxk_C Protein (prefoldin); ar 29.1 2.7E+02 0.0092 23.7 10.8 27 324-350 9-35 (133)
173 2xu6_A MDV1 coiled coil; prote 28.4 74 0.0025 26.3 4.6 31 289-319 40-70 (72)
174 1uo4_A General control protein 28.2 59 0.002 23.5 3.5 30 408-437 5-34 (34)
175 3iv1_A Tumor susceptibility ge 28.1 2.6E+02 0.0089 23.3 7.9 24 288-311 43-66 (78)
176 1gmj_A ATPase inhibitor; coile 27.9 2.6E+02 0.009 23.6 8.0 30 389-418 50-79 (84)
177 2xv5_A Lamin-A/C; structural p 27.8 1.9E+02 0.0066 23.5 7.1 45 387-431 9-53 (74)
178 2zdi_C Prefoldin subunit alpha 27.7 3.1E+02 0.011 24.1 9.1 22 254-275 14-35 (151)
179 2dq0_A Seryl-tRNA synthetase; 27.6 1.5E+02 0.005 31.2 8.0 22 249-270 31-52 (455)
180 1kd8_B GABH BLL, GCN4 acid bas 27.2 83 0.0028 23.0 4.2 28 407-434 4-31 (36)
181 2k48_A Nucleoprotein; viral pr 27.0 1.3E+02 0.0044 26.6 6.2 13 258-270 37-49 (107)
182 2z5i_A TM, general control pro 26.9 97 0.0033 23.7 4.8 31 457-487 2-32 (52)
183 3ljm_A Coil Ser L9C; de novo d 26.9 83 0.0029 21.9 3.9 26 167-192 3-28 (31)
184 2pnv_A Small conductance calci 26.9 65 0.0022 24.1 3.7 30 162-191 13-42 (43)
185 3c3f_A Alpha/beta peptide with 26.8 72 0.0025 23.1 3.7 29 172-200 1-29 (34)
186 1jnm_A Proto-oncogene C-JUN; B 26.7 1.2E+02 0.0042 23.3 5.5 42 270-312 9-50 (62)
187 3iv1_A Tumor susceptibility ge 26.7 2.1E+02 0.0071 23.9 7.1 40 304-343 34-73 (78)
188 1kd8_A GABH AIV, GCN4 acid bas 26.5 87 0.003 22.9 4.2 25 468-492 9-33 (36)
189 3viq_B Mating-type switching p 26.3 99 0.0034 26.2 5.2 42 410-452 7-48 (85)
190 2xdj_A Uncharacterized protein 26.3 1.1E+02 0.0039 25.4 5.5 44 260-303 24-67 (83)
191 3he4_A Synzip6; heterodimeric 26.1 28 0.00096 26.9 1.6 44 272-315 5-48 (56)
192 3qne_A Seryl-tRNA synthetase, 26.1 1.8E+02 0.0063 31.1 8.5 23 248-270 32-54 (485)
193 1n7s_B Syntaxin 1A; neuronal s 26.0 2.3E+02 0.0079 22.0 8.3 59 431-496 4-62 (68)
194 3m48_A General control protein 25.9 79 0.0027 22.7 3.8 25 467-491 7-31 (33)
195 3qne_A Seryl-tRNA synthetase, 25.8 2.3E+02 0.0077 30.4 9.1 23 326-348 74-96 (485)
196 2dq3_A Seryl-tRNA synthetase; 25.8 2.2E+02 0.0076 29.4 8.9 25 324-348 69-93 (425)
197 1jcd_A Major outer membrane li 24.8 2E+02 0.0067 22.3 6.2 31 398-428 5-35 (52)
198 4h22_A Leucine-rich repeat fli 24.8 2.8E+02 0.0096 24.3 7.9 68 416-490 21-88 (103)
199 1sfc_A VAMP 2, protein (synapt 24.7 3.1E+02 0.011 23.0 8.3 44 412-455 31-74 (96)
200 3efg_A Protein SLYX homolog; x 24.7 1.2E+02 0.004 24.9 5.3 26 340-365 10-35 (78)
201 3efd_K KCSA; helix bundle, C-t 24.6 59 0.002 22.7 2.8 21 46-66 7-27 (30)
202 3hd7_B Syntaxin-1A; membrane p 24.5 3.2E+02 0.011 23.1 11.7 78 429-520 11-88 (109)
203 4fi5_A Nucleoprotein; structur 24.4 1.6E+02 0.0054 26.2 6.3 17 302-318 73-89 (113)
204 3u06_A Protein claret segregat 24.4 1.4E+02 0.0047 31.1 7.0 53 249-301 10-62 (412)
205 2r2v_A GCN4 leucine zipper; co 24.3 1E+02 0.0034 22.3 4.1 31 407-437 4-34 (34)
206 3ghg_B Fibrinogen beta chain; 24.2 6.8E+02 0.023 26.8 12.2 42 402-443 93-134 (461)
207 2b5u_A Colicin E3; high resolu 24.0 3E+02 0.01 30.1 9.5 55 380-434 311-372 (551)
208 1lwu_C Fibrinogen gamma chain; 24.0 1.7E+02 0.0057 29.8 7.3 17 332-348 7-23 (323)
209 3azd_A Short alpha-tropomyosin 23.9 33 0.0011 24.7 1.6 30 406-435 6-35 (37)
210 1t2k_D Cyclic-AMP-dependent tr 23.8 1.9E+02 0.0064 22.1 6.0 33 398-430 23-55 (61)
211 4dk0_A Putative MACA; alpha-ha 23.5 2.5E+02 0.0087 27.0 8.3 11 260-270 88-98 (369)
212 2r2v_A GCN4 leucine zipper; co 23.4 85 0.0029 22.7 3.6 28 172-199 1-28 (34)
213 2lw1_A ABC transporter ATP-bin 23.2 2.5E+02 0.0085 22.9 7.0 20 302-321 26-45 (89)
214 1g6u_A Domain swapped dimer; d 23.2 1.5E+02 0.0052 22.3 5.1 27 390-416 20-46 (48)
215 3htk_A Structural maintenance 22.7 2.4E+02 0.0083 21.0 7.5 42 402-443 10-51 (60)
216 3etw_A Adhesin A; antiparallel 22.7 4.1E+02 0.014 23.6 12.6 80 258-348 11-93 (119)
217 2akf_A Coronin-1A; coiled coil 22.6 55 0.0019 23.1 2.4 13 286-298 15-27 (32)
218 3lay_A Zinc resistance-associa 22.5 2.5E+02 0.0087 26.1 7.7 66 244-309 66-142 (175)
219 4emc_A Monopolin complex subun 22.5 3E+02 0.01 26.4 8.3 16 498-513 65-80 (190)
220 3vp9_A General transcriptional 22.2 1.8E+02 0.0063 24.9 6.1 20 380-399 72-91 (92)
221 2z5i_A TM, general control pro 22.1 1.7E+02 0.006 22.3 5.4 38 222-269 9-46 (52)
222 3qh9_A Liprin-beta-2; coiled-c 22.1 3.6E+02 0.012 22.8 8.4 70 161-234 8-77 (81)
223 3hie_A Protein PSL1, exocyst c 22.0 46 0.0016 31.4 2.6 13 54-66 7-19 (171)
224 2dgc_A Protein (GCN4); basic d 21.9 1.3E+02 0.0045 23.6 4.8 44 270-314 17-60 (63)
225 3okq_A BUD site selection prot 21.9 4.6E+02 0.016 24.0 9.1 36 380-415 32-72 (141)
226 3l4q_C Phosphatidylinositol 3- 21.3 5.1E+02 0.017 24.2 14.9 81 326-442 85-165 (170)
227 3cve_A Homer protein homolog 1 21.1 3.5E+02 0.012 22.2 9.3 14 185-198 6-19 (72)
228 3gp4_A Transcriptional regulat 20.8 4.1E+02 0.014 23.2 8.4 31 287-317 91-121 (142)
229 2wt7_A Proto-oncogene protein 20.8 2.4E+02 0.0082 21.8 6.1 29 399-427 25-53 (63)
230 2ke4_A CDC42-interacting prote 20.5 2.1E+02 0.0073 24.3 6.2 78 224-320 14-91 (98)
231 4dzn_A Coiled-coil peptide CC- 20.5 1.4E+02 0.0049 21.0 4.2 14 399-412 4-17 (33)
232 3uux_B Mitochondrial division 20.3 5.2E+02 0.018 25.6 9.7 76 220-319 151-226 (242)
233 1kd8_A GABH AIV, GCN4 acid bas 20.2 98 0.0034 22.6 3.4 29 408-436 5-33 (36)
234 1vp7_A Exodeoxyribonuclease VI 20.0 2.2E+02 0.0075 24.6 6.2 53 223-275 32-84 (100)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.31 E-value=2.2e-07 Score=83.52 Aligned_cols=31 Identities=3% Similarity=-0.126 Sum_probs=21.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk 199 (533)
+|-+++..++.++..+...+..++.++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777666666664
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.99 E-value=7.3e-10 Score=126.61 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 438 DNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 438 d~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
..+++.++..+.+|.-+...+-.....+.+.+.+|..++.+|+++++..
T Consensus 1087 e~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~ 1135 (1184)
T 1i84_S 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135 (1184)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333443333333333333444444555555555555554443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.89 E-value=2e-09 Score=123.01 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHhhhHHHHH
Q 037185 176 QYEDKLRVLNLSLQLSEEEVA 196 (533)
Q Consensus 176 elEdELreaneKL~~sEEe~~ 196 (533)
+++.+|..++.+|...+..+.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ 881 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELK 881 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 4
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.85 E-value=0.0016 Score=61.18 Aligned_cols=110 Identities=22% Similarity=0.228 Sum_probs=79.2
Q ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 037185 171 LGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIER 250 (533)
Q Consensus 171 ~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~e 250 (533)
+.||+.||-.|-++|+||+.--|-.+|++.. ..+++..+..++..
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~-------------------------~tEl~k~~~~~E~~---------- 49 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKS-------------------------HTEMSKSISQLESL---------- 49 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------------------HHHHHHHHHHHHHH----------
Confidence 5689999999999999999988888888522 22222222333322
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
+--|++.+..|+..-..++++++.+-+.|+.|++--.--.++|+.|...+..+..++.-++..++
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345888888899999999999999999999988777888888888877777778887776665
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.81 E-value=0.0017 Score=62.77 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
.+|.++...++.+..+|..+..+++.+++.+..-..++.++...|+.++..+......|.+.+..+..+. -.-|=..|
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~~kE~~aL 95 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--SERELRSL 95 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSSHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHH
Confidence 4555666677777888888888888888888777777777877788888777777777777777775432 33444556
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e 348 (533)
+.||..+...+..++..+.+
T Consensus 96 ~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.62 E-value=0.0044 Score=59.12 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH----HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ----VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e----v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
.++..+...+++|+..+..+..++..|++|+..-..+ +..||..|+.+.+....+...|++|+++--|.+.+
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455566788999999999999999999999888877 88888888888888888888888888877766655
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.40 E-value=0.018 Score=72.74 Aligned_cols=135 Identities=17% Similarity=0.099 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 230 LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
++.+..-|+..+..|....+.+..+++.+..+|-+|+..++++...-.+...+..++.+-++.+...++.+..-..+|..
T Consensus 1915 l~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~ 1994 (3245)
T 3vkg_A 1915 LEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAV 1994 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777778888889999999999999999999988888888888777777777777777777766667766
Q ss_pred HHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 310 LKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 310 LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
.|...-.-..+--|- .-++.++..+..+......+|.+.+.....+++++.++.+
T Consensus 1995 ~k~~~e~dL~~A~Pa-~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 1995 QKVKAYADLEKAEPT-GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432222222222 4455566666666666666666644444444444444444
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.35 E-value=0.0061 Score=70.19 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=1.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
|+..|..|...|.....+..+|.+.+....
T Consensus 926 LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~ 955 (1080)
T 2dfs_A 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955 (1080)
T ss_dssp -------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333443333333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.34 E-value=0.053 Score=52.40 Aligned_cols=113 Identities=12% Similarity=0.190 Sum_probs=52.0
Q ss_pred hhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhh
Q 037185 300 LSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQER 379 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~ 379 (533)
|+..|.+|..|+..+... .++|..|..+.+.+..++.........++.++++++.+-.+...
T Consensus 13 LQ~lD~~i~~l~~~~~~l-----------p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~------- 74 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREK-----------RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA------- 74 (256)
T ss_dssp HHHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 667788888777666542 34444444444444444444333333344444444443333222
Q ss_pred hhhhHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 380 GMQSEINQLKVEV--CERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 380 ~L~gEie~Lk~El--~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
-|...+..+ ...-+++.+|.+.|+.++.++..+..+.-.+...+..+.+.+
T Consensus 75 ----ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 75 ----KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp ----HHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 123445555555555555555444444444444444433333
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.07 E-value=0.029 Score=53.61 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=82.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 037185 217 EADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKV 296 (533)
Q Consensus 217 k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~l 296 (533)
.+.+.+-+.....++.++.+|+.....+ ++..++|.++|+. ++.-+.-+++.|
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EF----------qesSrELE~ELE~-----------------eL~~~Ek~~~~L 61 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEF----------QEGSRELEAELEA-----------------QLVQAEQRNRDL 61 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 3444455555666666666666444333 3455555444432 222333355555
Q ss_pred hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
...+..+..++..+|..+..+..-+.-.-+.|+.+|+.|...+..|..+++++|..---+|...|...+--.
T Consensus 62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 666666667788888888777777777788899999999999999999999977777777777777666333
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.90 E-value=0.013 Score=67.55 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHh----------hhhhHHHHH
Q 037185 333 FCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVC----------ERDNRIEAL 402 (533)
Q Consensus 333 skL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~----------~~~~~Ie~L 402 (533)
..|...+..|+.++.++..+....+++.+.+.+.+..++. .+..|++.|+.++. ..++.|..|
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~-------~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L 989 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI-------TYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989 (1080)
T ss_dssp ----------------------------------CHHHHH-------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777777555444455555555544333322 44445555544433 333344444
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 403 NKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 403 Nk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
...++.++.++..+..|+..+..+...+.
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.56 E-value=0.017 Score=60.15 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.++.+|.+++.+....+.....+|.+.++.+....+.+.-.+..+..++.++.+..+.++.++..
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 527 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA 527 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45666777777777777777777777777666555666666666666666666666666665555
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.50 E-value=0.37 Score=44.68 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q 037185 253 KELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIAL 314 (533)
Q Consensus 253 kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~l 314 (533)
...++|+.|+..|+.|.. +.+---|.|.+|+..|.+++..|..-......+...|
T Consensus 74 ~yEeqIk~L~~kLKEAE~-------RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAET-------RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777776655 3333445677777777777766654444444444333
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.18 E-value=0.84 Score=42.99 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=34.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhh
Q 037185 392 VCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRD 438 (533)
Q Consensus 392 l~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd 438 (533)
+.+...+|..|..+++.++..+.....|+..+..+|..|=-+-.+.+
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33455578888888888888888888888888888776666655555
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.90 E-value=1.1 Score=57.27 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=20.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
....+...++.|..|+..|+.|+.+++..+.||..+.+.+
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555554444443
No 16
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=95.84 E-value=0.087 Score=46.75 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=52.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHH
Q 037185 275 LNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDAR 345 (533)
Q Consensus 275 ~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~k 345 (533)
|+.+-+.=+.+|..|++++..-+..|.++..-...++..+.+=..+++...-++..++..|+++|..|-+|
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 77777788899999999999999999999999999999999999999999999999999999999988776
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.57 E-value=0.51 Score=41.74 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
+++.+..+.++.|...|..... .-.+|.+....+.....++...+..-...++||++.+
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~--------------~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~------- 71 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEA--------------RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC------- 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------
Confidence 4555555555555555443333 2223333333333333333333444444455555542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhh
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKME 369 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E 369 (533)
..|....+.|+.+|.+.+.+..-.|+....+.++|..
T Consensus 72 ----~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkk 108 (129)
T 2fxo_A 72 ----DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK 108 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444455555555555444444456655555555543
No 18
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.54 E-value=1.5 Score=40.65 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.3
Q ss_pred hHHHHHhhhhhHHHHh
Q 037185 261 LQGQLKLAQDDVTTLN 276 (533)
Q Consensus 261 LQ~~Le~~q~e~a~~k 276 (533)
+.+.|+.+..-+.+..
T Consensus 26 ~E~dLEraEERae~aE 41 (155)
T 2efr_A 26 LKKLLERAEERAELSE 41 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777666443333
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.14 E-value=0.32 Score=43.02 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=69.6
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHH----HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh---
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQ----VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL--- 328 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e----v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l--- 328 (533)
..+++|+.....+.-++..|+.|+..-..+ +..||..|..+.+.-..+...||+|+++--|-+..--.--++|
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 467889999999999999999999998865 6779999999999999999999999999888776643333322
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e 348 (533)
.+-+-...|.++.|+..|.+
T Consensus 83 E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 83 EQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23333444555555555543
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.91 E-value=0.2 Score=52.07 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185 307 VAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 307 Ir~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~ 347 (533)
++++..+.+...+++.-|..++..+|.+|.+++...+..+.
T Consensus 440 ~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 440 ITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444433
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.60 E-value=0.54 Score=41.45 Aligned_cols=102 Identities=19% Similarity=0.319 Sum_probs=48.2
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
|+..+...-..+.....+|.+|+..+. .|.+||..|...+++|+..|.+.+.+.
T Consensus 20 l~~~~~~~~~~l~~~k~Ei~elrr~iq-----------~L~~el~~l~~~~~~LE~~l~e~e~~~--------------- 73 (129)
T 3tnu_B 20 LQQTAGRHGDDLRNTKHEISEMNRMIQ-----------RLRAEIDNVKKQCANLQNAIADAEQRG--------------- 73 (129)
T ss_dssp --------------CHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHH---------------
Confidence 333334444444444555555555554 555666666666666666666522221
Q ss_pred hhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 037185 369 EITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNT 429 (533)
Q Consensus 369 E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~ 429 (533)
+.+...+++.|..|.. .+..+..+++..-.+|..|+.=|-.|+.+|++
T Consensus 74 ------~~~l~~~q~~i~~lE~-------eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIat 121 (129)
T 3tnu_B 74 ------ELALKDARNKLAELEE-------ALQKAKQDMARLLREYQELMNTKLALDVEIAT 121 (129)
T ss_dssp ------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222334444444444 44444555555566677777777777777755
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.48 E-value=2.4 Score=37.42 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
-..+|.++.++...|..+|...+....-++.+..++..+|..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777666666677777777777766554
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.34 E-value=0.46 Score=42.03 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 037185 327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIM 406 (533)
Q Consensus 327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~i 406 (533)
.|.+||..|...+++|+..|.+.+.+ ++.+...+++.|..|.. .+..+..++
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~---------------------~~~~l~~~q~~i~~lE~-------eL~~~r~em 100 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGR---------------------YCMQLAQIQEMIGSVEE-------QLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 45555556666666666666552221 11222233444444443 444455555
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHH
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNT 429 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~ 429 (533)
+..-.+|..|+.=|-.|+.+|++
T Consensus 101 ~~ql~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 101 EQQNQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777777754
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.64 E-value=1.4 Score=38.55 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhh
Q 037185 223 ERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSD 302 (533)
Q Consensus 223 ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~ 302 (533)
.+.+|..|+++|..+. -..-.|+.++.+++..+..++.|++.|...-..
T Consensus 18 ye~~I~~LR~qid~~~-----------------~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~-------------- 66 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLT-----------------NDKARVEVERDNLAEDIMRLREKLQEEMLQREE-------------- 66 (119)
T ss_dssp HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------
Confidence 3667777776665554 334567788889999999999999887643222
Q ss_pred hhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHH
Q 037185 303 RNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLD 343 (533)
Q Consensus 303 ~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le 343 (533)
.+++|..||..+-++ ++-|..|.+.|.-|.++..-|.
T Consensus 67 ~E~di~~lrK~lD~~----~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 67 AENTLQSFRQDVDNA----SLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 245666666666543 4446666666666666665543
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.30 E-value=0.95 Score=49.14 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=89.4
Q ss_pred hhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh-hHHHH
Q 037185 370 ITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL-KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG-QIEEH 447 (533)
Q Consensus 370 ~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L-k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~-qme~h 447 (533)
|+.+++-|++.+..-|+.|+..+++. +.-++++... +..++.|.......+ . ....=++|. +|++|
T Consensus 51 LQglLdkqErDltkrINELKnqLEdl----sKnsKdseqy~k~~~E~Lr~rq~q~~-d-------NdNtynE~S~ELRRr 118 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEY----QKNNKDSHSLTTNIMEILRGDFSSAN-N-------RDNTYNRVSEDLRSR 118 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHTTSSHHHHHH-H-------HHHHHHHTTHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHH----HhhchhHHHHHHHHHHHHHHHHHhhh-c-------cchhHHHHHHHHHHH
Confidence 45567778889999999988888654 4555555554 555555544332222 1 122334444 78888
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-------hhhHhhhhhHHHHHH
Q 037185 448 SRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLC-------FSLEHYRSGYQELRQ 520 (533)
Q Consensus 448 l~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLC-------fslehyr~~y~~L~~ 520 (533)
+.-|..+.-..++....+++.|.+++.++..||.-|.-|.. +-|-=| +=++.|-+--++|.|
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir-----------sCKgsCsr~~~~~vd~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR-----------SCRGSCSRALAREVDLKDYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HGGGTBSCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccccccchheeecchHHHHHHHHHHHH
Confidence 88888887777788888888899999988888888776543 333334 236678888889999
Q ss_pred HHcC
Q 037185 521 AFLG 524 (533)
Q Consensus 521 ~~~G 524 (533)
+.+=
T Consensus 188 v~a~ 191 (562)
T 3ghg_A 188 VIAK 191 (562)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 8874
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.11 E-value=1.5 Score=38.82 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=52.3
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 292 RIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 292 ri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
|+..|+.....+..++..+|..+..+..-..-.-+.|+.||..|...+..|-.+++++|..---+|-.-|-.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 455556666666778888998888888877888888888888888888888888888544444444444433
No 27
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=92.90 E-value=5.7 Score=36.63 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS 330 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~a 330 (533)
|+.|+.-..++|.+|+.-|.+..-.-..|..|..-|-.||-|-. -.+.||..|+..++.++.+| +|+.-.-
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~-------~HQKEi~~Lrae~~~~QRn~--~K~~~~L 83 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNV-------AHQKEIGKLRAELGTAQRNL--EKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc-------HHHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 45566777788888888888877777788777777777766643 34668899999999998885 5655333
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q 037185 331 EMFCLLEKQALLD-ARLKE 348 (533)
Q Consensus 331 EiskL~E~~~~Le-~kL~e 348 (533)
--..++--+.+|+ .+|++
T Consensus 84 krn~~qQnQQSlDiRKLrE 102 (167)
T 4gkw_A 84 KRNSQQQNQQSLDMRKLGE 102 (167)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HhhhHHHhHhhhhHHHHHH
Confidence 3334445555555 34556
No 28
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.30 E-value=1.1 Score=37.61 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=44.5
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL 335 (533)
-....|..++.+++..+.-++.|++.|..--...... |.-||..+-+| ++-|+.|.+.|.-|
T Consensus 14 ~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d--------------~~~LrkdvD~a----~l~r~dLE~kvesL 75 (86)
T 3swk_A 14 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT--------------LQSFRQDVDNA----SLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHTTHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHH----HHHHHHHHHHHHHH
Confidence 3455677889999999999999999988644444444 44444444433 34455666666666
Q ss_pred HHHHHHH
Q 037185 336 LEKQALL 342 (533)
Q Consensus 336 ~E~~~~L 342 (533)
.+++.-|
T Consensus 76 ~eEl~fL 82 (86)
T 3swk_A 76 QEEIAFL 82 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.80 E-value=1.4 Score=38.73 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHH
Q 037185 283 RMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARL 346 (533)
Q Consensus 283 ~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL 346 (533)
+.|+.+|.-+|..|...++.+......|+..+.|++..+..+-.++++-|..|-.+...+...+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455556666666666666666666667777777777766666666665555555554444443
No 30
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.52 E-value=2.8 Score=35.80 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=50.4
Q ss_pred HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhH---hhhhH
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDK---AQLQS 330 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EK---a~l~a 330 (533)
...++..|+.+.+++...+..+..++........++.+-|+-|.-.+..+++++..+...|.+|..++--.- +.-.+
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777766555555555555555555555555555555555555555433221 12223
Q ss_pred HHHHHHHHHHHHH
Q 037185 331 EMFCLLEKQALLD 343 (533)
Q Consensus 331 EiskL~E~~~~Le 343 (533)
++.-|.-.+..|+
T Consensus 87 ev~~L~RriqllE 99 (101)
T 3u1c_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4555544444443
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.44 E-value=1.4 Score=38.93 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185 282 ERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 282 e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~ 347 (533)
-+.|+.+|.-+|..|...++........|+..+.|++..+..+-.++++-|..|-.+...+...+.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666777777777777776666666666665555555544443
No 32
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=90.85 E-value=5.1 Score=34.72 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql 363 (533)
++...|...++-+..+-+.|++.|++|+..+-|+..++-.||-. +| -|+.+|..-|--.-.+|=++...
T Consensus 25 kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklA------kl-----dLE~RLsKtEKDkAiLELkLaE~ 93 (101)
T 1d7m_A 25 KQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLA------RM-----ELEARLAKTEKDRAILELKLAEA 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH------HH-----HHHHHHhhhhhHHHHHHHHHHHh
Confidence 44455666677778888899999999999999999999888743 22 35555555444444444444444
Q ss_pred HHHH
Q 037185 364 ETEK 367 (533)
Q Consensus 364 eaEK 367 (533)
..+|
T Consensus 94 ~Dek 97 (101)
T 1d7m_A 94 IDEK 97 (101)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4433
No 33
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.78 E-value=1.6 Score=37.10 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHhH
Q 037185 339 QALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL-NKIMDSLKLKYDMLM 417 (533)
Q Consensus 339 ~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L-Nk~id~Lk~k~e~L~ 417 (533)
...|-.+|..|=..+++||.+=+.|+++-. .+.. .....|..+ ...|..|+..++.+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~------------------~l~~---~~~~~~~~~ye~~i~~Lr~~i~~~~ 69 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELE------------------QLKG---QGKSRLGDLYEEEMRELRRQVDQLT 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhh---ccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345667777765556666666555554221 1111 011123333 466777888888888
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 037185 418 AEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 418 ~EK~~l~~kv~~L~ad~~ 435 (533)
.|++.+...+++|-+++.
T Consensus 70 ~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 70 NDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888877666543
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.75 E-value=10 Score=35.15 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=5.4
Q ss_pred HhhhhHHHHHHHH
Q 037185 325 KAQLQSEMFCLLE 337 (533)
Q Consensus 325 Ka~l~aEiskL~E 337 (533)
++....++.+|.+
T Consensus 53 ~~~~~~e~~~L~~ 65 (154)
T 2ocy_A 53 LSDRDDEVKRLRE 65 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHH
Confidence 3344444444433
No 35
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.83 E-value=7.6 Score=33.71 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHH
Q 037185 405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAA-SESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 405 ~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~-~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
.++.++.++.-|..+...+..++..|+.++..=-..-.+.|....++.-|--.|.+. ++.|++-|..=|..-..+|..+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn 85 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN 85 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666666555555556666777776666666654 5777888888777777777777
Q ss_pred HHHHHHHhh
Q 037185 484 DRQRMVILD 492 (533)
Q Consensus 484 e~Q~~~i~e 492 (533)
+.-+..|-|
T Consensus 86 ~~L~~qL~d 94 (97)
T 2eqb_B 86 KRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 766666554
No 36
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.70 E-value=2.2 Score=35.64 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 306 EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 306 EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
||++|+..+.++ +.||+.+..+|-.+......+..|+++
T Consensus 1 Ei~eLr~qi~~l----~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 1 EMRELRRQVDQL----TNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777544 568888888888888887777777665
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.54 E-value=2.4 Score=38.27 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=26.1
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSD 302 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~ 302 (533)
..+-+|..+|..++..+...+..++.-++++..||.+|+.|.+.+.+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555544444445555555666677777777665543
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.05 E-value=6.5 Score=33.29 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
..++..|+-+.+++...+..+..++........++.+.|.-|.-.+..++.++..+...+.++..+
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777655555555555555555555555555565555555555544
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.94 E-value=6.4 Score=35.36 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhc----hhhhhHHHHHHHHHHhhHHh
Q 037185 255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETN----LSDRNNEVAELKIALSDAEE 319 (533)
Q Consensus 255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~----Ls~~d~EIr~LK~~lsDAee 319 (533)
+..++-||.+|-.+|+-..-|..+..+=.+=|..|.+.+...+++ +.+++.||.+|++.|-||++
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778887777766666655555555566666666665555 55666666666666665544
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.51 E-value=6.4 Score=41.29 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=47.8
Q ss_pred hchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhH----HH
Q 037185 371 TGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQI----EE 446 (533)
Q Consensus 371 ~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qm----e~ 446 (533)
..+++-|++.+...|++|+..|++..+--...++.+-.++.. +..-.+.+.+-|+.+.|. +.
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~--------------lk~~~~q~~dndn~~~e~s~eLe~ 120 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL--------------MRGDFAKANNNDNTFKQINEDLRS 120 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------------HHHHHHhhccchHHHHHHHHHHHH
Confidence 345566667777777777777665544444443333333222 222233444455555443 33
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 447 HSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 447 hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
|+.-|.-..-.-+.....++..|..++.++..||.-|
T Consensus 121 ~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 121 RIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222223333444555556666666665554
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.17 E-value=4.4 Score=34.32 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
+|..|...-++-=+|.+.+|.+-..||.++.++..
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666667777766664
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.78 E-value=4.7 Score=32.93 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
+..++..|+.+.+++...+..+..++........++.+-|..|.-.+..++.++..+...+.+|..|
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777788888877777777766655555555555555555555555555555555555544
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.48 E-value=6.4 Score=35.01 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 037185 393 CERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDEL 472 (533)
Q Consensus 393 ~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL 472 (533)
+++...|+.|...++.|+..++.++.|- -..|.+|.+++++|..+-+.--.....|.-..+.|
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~-----------------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~L 73 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTES-----------------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFL 73 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777776665544 23355666677777655543333334444444555
Q ss_pred HHHHHHH
Q 037185 473 RFRVKEL 479 (533)
Q Consensus 473 ~~rv~eL 479 (533)
|..+..|
T Consensus 74 r~e~~~l 80 (120)
T 3i00_A 74 RAELDEL 80 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 44
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.89 E-value=14 Score=32.13 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE 394 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~ 394 (533)
.+..+|.+....|+.++..|+..+.-|-+.+..-.+-..+++. ....+.+|++-|++.||+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFD 65 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666555554454444444443333333 444555666666666654
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.87 E-value=3.4 Score=36.64 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185 265 LKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE 309 (533)
Q Consensus 265 Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~ 309 (533)
+..++.-+..++.-|.+|+.---++++++-.|..+|..+..++..
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 344445555666667777765566666666666666655555443
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.64 E-value=15 Score=32.02 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=35.8
Q ss_pred hhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185 374 HEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAE 433 (533)
Q Consensus 374 ~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad 433 (533)
|.++-..|+..|..+..+.....-+|..+.-.++++|.||+.-.+-...+.+.+..|..+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~ 77 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 344445666666666666666666777777777777777765444444444444444333
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=84.37 E-value=3.6 Score=34.74 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
|..++-|+++....+.+++.+|++.+.+.+.|..+++++..
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999988888888777777766
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.07 E-value=5.5 Score=35.97 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.0
Q ss_pred HhhhhhHHHHH
Q 037185 256 EGTHQLQGQLK 266 (533)
Q Consensus 256 E~ik~LQ~~Le 266 (533)
+.+..|..+++
T Consensus 75 ~~~~~L~~~l~ 85 (138)
T 3hnw_A 75 KMADSLSLDIE 85 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 49
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.37 E-value=11 Score=31.45 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
.+|..+-++...+.+.|...+....-++.+..++..+|..+.. | +++.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~----q----------------------------l~ea 61 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG----S----------------------------MKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------------------------HHhH
Confidence 3455555555555555555444444466666666666555433 1 4455
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185 410 KLKYDMLMAEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L~ad~~ 435 (533)
..+++.|..-|..+..+|+.|-+.+.
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666667666666655544443
No 50
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=83.17 E-value=11 Score=34.48 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHhhhhhHHHHHhhhhhHHHHhhhhH
Q 037185 253 KELEGTHQLQGQLKLAQDDVTTLNAKLD 280 (533)
Q Consensus 253 kl~E~ik~LQ~~Le~~q~e~a~~k~Kle 280 (533)
...+.+..|..+|+.|...+....+|++
T Consensus 49 ~deEr~~~lE~qLkeak~~aeeadrKye 76 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDADRKYE 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445666666666666665555555553
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.06 E-value=21 Score=30.35 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM 368 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~ 368 (533)
..+.+++..|..+-+.|-..|.+++.+...+..+|..++++..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666655555555555555554433
No 52
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=81.90 E-value=11 Score=33.50 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhh
Q 037185 250 RLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ 329 (533)
Q Consensus 250 ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~ 329 (533)
+..+|+....+|+.+|.....+-+.+... +++--...+.+++.+...|..-++.|.+..+.|+.=|..++
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777766655544444 34445567888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e 348 (533)
-.|.+|......+-.+|..
T Consensus 77 ~qL~~Lt~~Re~V~~eL~r 95 (112)
T 1x79_B 77 EQMAVLMQSREQVSEELVR 95 (112)
T ss_dssp HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888877776665
No 53
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.55 E-value=3.9 Score=37.34 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=12.3
Q ss_pred HHHHhhHHHHHHHHHHHhhhH
Q 037185 172 GRVIQYEDKLRVLNLSLQLSE 192 (533)
Q Consensus 172 ~RiielEdELreaneKL~~sE 192 (533)
.||..||..|++|+.-.+-.+
T Consensus 52 Er~~~lE~qLkeak~~aeead 72 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDAD 72 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366666666766665444433
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.07 E-value=18 Score=29.49 Aligned_cols=28 Identities=4% Similarity=-0.109 Sum_probs=19.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHH
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVA 196 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~ 196 (533)
++-.|+..+..++-.+.+++...+.+..
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~ 30 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKK 30 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777666533
No 55
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.09 E-value=7.5 Score=35.47 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKL 411 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~ 411 (533)
.+.....+|...+.+.+..|..++..+.+||.
T Consensus 100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666677777666666654
No 56
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=78.98 E-value=19 Score=29.66 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
+||..|...+++|+..|.+.+.+. ..+...++..|..|.. .+..+..++...
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~---------------------~~~~~~~q~~i~~lE~-------eL~~~r~e~~~q 52 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENF---------------------AVEAANYQDTIGRLQD-------EIQNMKEEMARH 52 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 356666667777777777632222 1122233444444433 445555566666
Q ss_pred HHHHHHhHHhHHHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTL 430 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L 430 (533)
-.+|..|+.=|-.|+.+|++-
T Consensus 53 ~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 53 LREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 667888888888888777654
No 57
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.68 E-value=24 Score=29.33 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 037185 334 CLLEKQALLDARLKE 348 (533)
Q Consensus 334 kL~E~~~~Le~kL~e 348 (533)
.|....+.|+++|.+
T Consensus 67 ~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 67 ELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 58
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.31 E-value=13 Score=31.35 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=11.2
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHH
Q 037185 379 RGMQSEINQLKVEVCERDNRIEAL 402 (533)
Q Consensus 379 ~~L~gEie~Lk~El~~~~~~Ie~L 402 (533)
..|..++++|+.|...-..+|..|
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444443
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.66 E-value=38 Score=34.50 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK 420 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK 420 (533)
..+.+|++|+++...-++.|..+.+.|+..+.+|..+-.-+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 45777888888888888888888888887777776554444
No 60
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=77.59 E-value=12 Score=32.69 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
++.+.+.+++-----.-|-+++.-|++++.+..+-|.+|+ +++.||..|++.|-|+.
T Consensus 31 q~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~-------elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 31 QDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIK-------ELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3333333333333333444555556666666555555544 45667888888887776
No 61
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.59 E-value=17 Score=33.19 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
..+.+|++-|++.+|+ ..|+=.+.- +.+...+..++..|.+.+.+.+.-|.-+..+|..|.
T Consensus 70 ~~ie~ElE~LTasLFe------EAN~MVa~a-------r~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 70 DKLNKEVEDLTASLFD------EANNLVADA-------RMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHT-------THHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667776654 223222222 335566777788888888888888877777776653
No 62
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.30 E-value=8.4 Score=33.80 Aligned_cols=63 Identities=6% Similarity=0.163 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG 442 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~ 442 (533)
.|.=+|..||..+.+.+.....+++.+.+....++.+....+.+...+..|...++.||.=|.
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888778888888888888888888888899998884
No 63
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.07 E-value=10 Score=31.48 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409 (533)
Q Consensus 330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L 409 (533)
+||..|...+++|+..|.+. |.. +..+...++..|..|. ..+..+..++...
T Consensus 3 ~eie~L~~q~~~Le~~l~e~-------E~~--------------~~~~l~~~q~~i~~lE-------~el~~~r~e~~~q 54 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDL-------EDS--------------LARERDTSRRLLAEKE-------REMAEMRARMQQQ 54 (86)
T ss_dssp ---------CTTHHHHHHHH-------HHH--------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH-------HHH--------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 56666777777777777773 221 1112234444444444 4455555566666
Q ss_pred HHHHHHhHHhHHHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTL 430 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L 430 (533)
-.+|..|+.=|-.|+.+|++-
T Consensus 55 l~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 55 LDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 667888888887788777653
No 64
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.57 E-value=33 Score=28.89 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 037185 381 MQSEINQLKVEVCERDNRIEALNKIMD 407 (533)
Q Consensus 381 L~gEie~Lk~El~~~~~~Ie~LNk~id 407 (533)
|+.-|..|..+++.....+...+..+.
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 65
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=76.30 E-value=47 Score=35.82 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=45.6
Q ss_pred HHhhhhhhhhhh----HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 037185 432 AEARSRDNHIGQ----IEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFS 507 (533)
Q Consensus 432 ad~~sRd~~I~q----me~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfs 507 (533)
+.+.+-||.+.| |++|+.-|.-..-.-|.....+++.|..++.+...||.-|.-|.. .|+.
T Consensus 100 ~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~---------------~Cr~ 164 (491)
T 1m1j_A 100 EGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR---------------ACKG 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTTT
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------Hhcc
Confidence 334444444443 344444444333333455556677778888888888877766543 4543
Q ss_pred -----------hHhhhhhHHHHHHHHcC
Q 037185 508 -----------LEHYRSGYQELRQAFLG 524 (533)
Q Consensus 508 -----------lehyr~~y~~L~~~~~G 524 (533)
++.|-+-=++|.|+.+-
T Consensus 165 pC~r~~~y~VD~~~Ye~~QKqLeQv~a~ 192 (491)
T 1m1j_A 165 SCARSFDYQVDKEGYDNIQKHLTQASSI 192 (491)
T ss_dssp TBSSCCCCCCCTTTTHHHHHHHHHHTTC
T ss_pred hhhhhHHhhhcHHHHHHHHHHHHHhhcc
Confidence 45566667788888653
No 66
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.07 E-value=36 Score=28.94 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=5.4
Q ss_pred hhhHHHHHHHHHhh
Q 037185 381 MQSEINQLKVEVCE 394 (533)
Q Consensus 381 L~gEie~Lk~El~~ 394 (533)
|+.-|..|-.+++.
T Consensus 49 L~kk~~~lE~eld~ 62 (101)
T 3u1c_A 49 LEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.89 E-value=34 Score=36.59 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHH
Q 037185 427 VNTLMAEARSRDNHIGQIEEHSRK 450 (533)
Q Consensus 427 v~~L~ad~~sRd~~I~qme~hl~q 450 (533)
|..|.+.+..++.+|.+++.-+++
T Consensus 123 i~~Iq~slk~~Q~Qi~en~n~~~~ 146 (464)
T 1m1j_B 123 VNMIDNKLVKTQKQRKDNDIILSE 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHH
Confidence 334445555555555555544444
No 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.13 E-value=49 Score=33.53 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhh
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQ 327 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~ 327 (533)
-||.-|.+++.++......-.-|-..+-..+.-+--+++|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 3566666666666665555555544444444433334444
No 69
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.08 E-value=71 Score=32.34 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMA 432 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~a 432 (533)
.--..|+|.|++.+..+-.+..-....|--|-+|++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 334445666777666665555555555555544443
No 70
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=72.59 E-value=99 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHhhhhHhhhhhHHHHHH
Q 037185 493 AAEEKREAIRQLCFSLEHYRSGYQELRQ 520 (533)
Q Consensus 493 ~aEeKREAIRQLCfslehyr~~y~~L~~ 520 (533)
.-..+-..+.+||...+.|-+.|+.|..
T Consensus 316 ~~~~~~~~~~~L~~~Y~~f~~aY~~lL~ 343 (413)
T 4hpq_C 316 SCLEDIRQTRNLLDFYANFERSYHNLLK 343 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778899999999999999998743
No 71
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=70.55 E-value=18 Score=30.84 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=26.7
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNT 429 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~ 429 (533)
+...+++.|..|..++.. +..+++..-.+|..|+.=|-.++..|++
T Consensus 38 e~~~~q~~i~~lE~eL~~-------~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAE-------IRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666555544 4444444455666677666666666654
No 72
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=70.13 E-value=10 Score=32.74 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 037185 263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI 312 (533)
Q Consensus 263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~ 312 (533)
..+..++.-+..++.=|.+|+.---++++++..|..++..+..++..|+.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666677777765566666666666666666665555544
No 73
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=69.75 E-value=7.3 Score=32.16 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
.|.+||..|+..++..++-|.+|-.++. .-+.+|.+|......|-.+|++.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~-----------~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALA-----------DARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999988887 44567888888888888888773
No 74
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=68.81 E-value=12 Score=28.59 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=36.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185 438 DNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483 (533)
Q Consensus 438 d~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev 483 (533)
+++|.+|+..|.-|+-.-|.|+|+-.+.. .-|+.|+..||..|
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq---~KlKqRit~lE~~v 46 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQ---MKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcC
Confidence 56788999999999999999999987764 56788999998764
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.77 E-value=38 Score=30.42 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=44.6
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
||..+++-...|-+-+.+-.-+.+-+-+...-+.-||++-++.|.+|.++++-|..+|.+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655666666666666777777777777788899888888888888888888877
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.66 E-value=24 Score=31.36 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=38.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 435 RSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV 489 (533)
Q Consensus 435 ~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~ 489 (533)
..||..|.++=.-+..|..+--.+.. +++..|..|+.+|..||-+.+-|+..
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776666666666655555543 45788999999999999999988855
No 77
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=68.46 E-value=37 Score=26.94 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 037185 401 ALNKIMDSLKLKYDMLMA-EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKEL 479 (533)
Q Consensus 401 ~LNk~id~Lk~k~e~L~~-EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eL 479 (533)
+|.+.|.+++..|+.+.. =+..+.+|..+- +..|....+.-......++..+.+||..+.-|
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k-----------------~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSK-----------------FADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888876654 233334443221 11222222222333455677889999999999
Q ss_pred HHHHHHHH
Q 037185 480 ENEVDRQR 487 (533)
Q Consensus 480 E~Eve~Q~ 487 (533)
+-|++-+|
T Consensus 69 ~~el~slk 76 (77)
T 3trt_A 69 TMEVDALK 76 (77)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99987654
No 78
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.89 E-value=30 Score=28.81 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185 334 CLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG 372 (533)
Q Consensus 334 kL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~ 372 (533)
.+...-..|..++..+..+...++.+++.+..-..|+..
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444333333355555555554444443
No 79
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=64.66 E-value=5.6 Score=31.72 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=26.8
Q ss_pred HhhhhhHHHHHHHHHhhh-----------hHhhhhhHHHHHHHHcCC
Q 037185 490 ILDAAEEKREAIRQLCFS-----------LEHYRSGYQELRQAFLGY 525 (533)
Q Consensus 490 i~e~aEeKREAIRQLCfs-----------lehyr~~y~~L~~~~~Gh 525 (533)
..+-|=+|-.||||||=. .+-+-++.++|...+-|.
T Consensus 17 maeealgklkairqlcgaedssdssdmqeveiwtnrikeledwlwge 63 (67)
T 2nr5_A 17 MAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGE 63 (67)
T ss_dssp HHHHHHHHHHHHHHTTTTTCC----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCccCCcchhhHHHHHHHHHHHHHHHHhhcC
Confidence 356677899999999965 445677777777776664
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.30 E-value=11 Score=31.08 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 285 QVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
|+...+++|..++..|...|.+|+.|+..+-
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888889999999998887764
No 81
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.65 E-value=66 Score=27.06 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=10.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHH
Q 037185 409 LKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 409 Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
|..+..-|..|......+|..|+
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 82
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.99 E-value=65 Score=26.74 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 037185 334 CLLEKQALLDARLK 347 (533)
Q Consensus 334 kL~E~~~~Le~kL~ 347 (533)
.|......++..+.
T Consensus 24 ~l~~q~~~l~~~~~ 37 (117)
T 2zqm_A 24 LVVQQKQKVQLELT 37 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 83
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=62.41 E-value=98 Score=28.60 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 037185 234 VRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETN 299 (533)
Q Consensus 234 v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~ 299 (533)
+++|| ..|+-.+.=+..|-++|.-|..+|+.-.--.+..-.-|++-+.|.--+.+||++|.++
T Consensus 100 LrELE---ADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 100 LGELE---ADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp THHHH---HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHH---hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 34554 3444444445556667766666666554444444455777778888888999999874
No 84
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=61.18 E-value=41 Score=28.17 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVN 428 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~ 428 (533)
-=.+||-.=++|=.+.|.|+.|+..+..++.
T Consensus 24 TKNaLnvvk~DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3356666667777777888888877777763
No 85
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.43 E-value=34 Score=28.20 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 281 YERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 281 ~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
++.++...|+.+|..|++ +|..|...|+|..
T Consensus 19 keqrEle~le~~Ie~LE~-------~i~~le~~ladp~ 49 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEA-------KLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCcc
Confidence 345666666666666555 6777777887754
No 86
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.36 E-value=76 Score=26.37 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 037185 328 LQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e 348 (533)
+..++.+|......+..++..
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~ 35 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGD 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 87
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=59.04 E-value=89 Score=27.04 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 037185 383 SEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINA 425 (533)
Q Consensus 383 gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~ 425 (533)
..++.|+-+|..+..+|..|+..++.....-.-+.+..+.+..
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777666654443333333333333
No 88
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=58.49 E-value=14 Score=26.49 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|..++..+.+.|..|+.-+..|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~~~ 33 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLXER 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHccC
Confidence 3467789999999999999999998877665
No 89
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=58.32 E-value=1.7e+02 Score=31.37 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037185 466 RKLVDELRFRVKELENEVDRQR 487 (533)
Q Consensus 466 ~~~v~eL~~rv~eLE~Eve~Q~ 487 (533)
...+..|+.++..||..|..|.
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888887775443
No 90
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.51 E-value=62 Score=27.04 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=7.2
Q ss_pred hhhHHHHHHHhHHHHhhh
Q 037185 353 GKALEDKIRQCETEKMEI 370 (533)
Q Consensus 353 ~~~lEdeirqleaEK~E~ 370 (533)
|..+..+++.++..+.++
T Consensus 8 ~e~~~~klq~~E~rN~~L 25 (79)
T 3cvf_A 8 REETQQKVQDLETRNAEL 25 (79)
T ss_dssp --CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHH
Confidence 444444444444444443
No 91
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.00 E-value=15 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|+.+++.|.+.|..|.+-+..|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~~~ 34 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVXER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4577889999999999999999998877654
No 92
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=56.81 E-value=16 Score=26.41 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|..++..+.+.|..|..-+..|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~~~ 34 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLXER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC
Confidence 4577889999999999999999998877655
No 93
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.67 E-value=30 Score=28.81 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=39.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185 437 RDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ 486 (533)
Q Consensus 437 Rd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q 486 (533)
=+++|.+|+..|..|+-.-|.|+|+..+.. .-|+.|+..||..|-.-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccc
Confidence 357788999999999999999999987764 56789999999988653
No 94
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=55.89 E-value=16 Score=25.79 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 037185 383 SEINQLKVEVCERDNRIEALNKIMDSLK 410 (533)
Q Consensus 383 gEie~Lk~El~~~~~~Ie~LNk~id~Lk 410 (533)
|||-.||.|+....++|-+|.=.|+.||
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655555555555544444444
No 95
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.30 E-value=18 Score=27.93 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
..+++|.+..+.|+.+++.|+.+...+++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777666665
No 96
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=54.02 E-value=1.5e+02 Score=30.75 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=53.8
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL 335 (533)
.....+|..+...-+++...+.++...-+++...+......+.+......++.+++..+..+.++..-=+..-..-|..+
T Consensus 136 ~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 215 (486)
T 3haj_A 136 DGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 215 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555556655556555554444443333333345666666666666555444444444555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHH
Q 037185 336 LEKQALLDARLKEWELQGKALEDK 359 (533)
Q Consensus 336 ~E~~~~Le~kL~e~e~~~~~lEde 359 (533)
...+......+...-..++.+|.+
T Consensus 216 n~~~~~y~~~~~~~~~~lQ~lEee 239 (486)
T 3haj_A 216 DQGTPQYMENMEQVFEQCQQFEEK 239 (486)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444444433
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.57 E-value=44 Score=31.07 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHHHH
Q 037185 394 ERDNRIEALNKIMDSLK 410 (533)
Q Consensus 394 ~~~~~Ie~LNk~id~Lk 410 (533)
.+.+.|+.|+-.+..|.
T Consensus 93 eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 93 LKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444333333333
No 98
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.12 E-value=31 Score=29.38 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=27.2
Q ss_pred chhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185 299 NLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 299 ~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~ 347 (533)
+++.++.....|+..+.+++..+..+-.++++.|+.|..+.+.+...+.
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666666667777766666666666555554443
No 99
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=52.00 E-value=41 Score=29.70 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE 318 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe 318 (533)
+.|..+++.++....+|..|..-+......++..=-+|.| -.+..=...++.+++.|.+||..|+|+-
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK--~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNK--STLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554333333333221111111 0111112233345555666666666654
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=51.02 E-value=66 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
+..-|-.+-..|..|+.+++. ++..+.....
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~-------le~~Le~s~~ 41 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRA-------MERSLEEARA 41 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHH
Confidence 333444445555555555555 5555554443
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.72 E-value=2.2e+02 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 465 SRKLVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 465 ~~~~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
+...+...+.+...|.++-++++-.|-+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 3344444444445555544444444433
No 102
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.28 E-value=1.1e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHH
Q 037185 307 VAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDAR 345 (533)
Q Consensus 307 Ir~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~k 345 (533)
...|+..+.|++..+..+-.+++..|+.|-.+...+...
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444444444444444444333
No 103
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=49.08 E-value=89 Score=28.22 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=33.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhh--hhhhhhhhhhHHhHHHH---HHHHHHHHHHHHHHHHhhhc
Q 037185 169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQI--ESAKRDVNIKEADLEME---RRQVFELQNYVRELETRLSE 243 (533)
Q Consensus 169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~--~~a~~dl~i~k~kLe~e---e~ei~~LQ~~v~ELE~~~~~ 243 (533)
+|-.+|.+++-+...+.-+|.-+.+...+ ++-+.+ ..+.-|+.+.+..|+.. ...|..|+..|.+|+..+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e---~y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESE---DYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhh---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56677777777766666666665554432 111111 12334555555555443 33444444444444444433
No 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.93 E-value=12 Score=40.53 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHcCCC
Q 037185 511 YRSGYQELRQAFLGYK 526 (533)
Q Consensus 511 yr~~y~~L~~~~~GhK 526 (533)
=|+.|+.||+.=+|++
T Consensus 550 GrdKykTLr~ir~Gnt 565 (575)
T 2i1j_A 550 GRDKYKTLREIRKGNT 565 (575)
T ss_dssp TCCHHHHHHHHTCSCH
T ss_pred CchHHHHHHHHhcCCc
Confidence 4788999999988973
No 105
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.01 E-value=17 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 408 SLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
.|..|.+.|..|++.|.++|..|..-+..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~~ 33 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVGER 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 467788999999999999999998776543
No 106
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.72 E-value=50 Score=25.63 Aligned_cols=40 Identities=3% Similarity=0.054 Sum_probs=15.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
|..++......|..|+.+++.+++....-..|-.-.+.+|
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444444444444443333333333333333
No 107
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.62 E-value=97 Score=28.80 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
.|+.+...|...+.+++..|..-++.++.++.++..|..+-..+..++
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555666665555555555544443333
No 108
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.29 E-value=26 Score=28.50 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=26.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185 437 RDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484 (533)
Q Consensus 437 Rd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve 484 (533)
+..+|+++|..+.+|.-.+..+..+ ...|+..|..|..|+.
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~e-------n~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLE-------NDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4567888888888887777555444 4555666666655553
No 109
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.24 E-value=66 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=12.5
Q ss_pred HHHHHhhHHhhhchhHhhhhHHHHHHHHHH
Q 037185 310 LKIALSDAEEKFTLDKAQLQSEMFCLLEKQ 339 (533)
Q Consensus 310 LK~~lsDAeeK~s~EKa~l~aEiskL~E~~ 339 (533)
|+..+.|++..+..+-.+++.-|+.|-.+.
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el 44 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREM 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 110
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=46.61 E-value=77 Score=26.56 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=22.7
Q ss_pred hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185 321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ 362 (533)
Q Consensus 321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq 362 (533)
++-|+..|+.|+-.+....+.++.++++ +|++++.
T Consensus 42 Lt~E~e~l~~El~s~~~~~~r~~~ri~e-------lEeElkr 76 (77)
T 2w83_C 42 LTCEKDVLQGELEAVKQAKLKLEEKNRE-------LEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhc
Confidence 4568889999999999999999999999 6666654
No 111
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.87 E-value=1.6e+02 Score=26.19 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
..|..+...|+.+.......+..++...+.|..++..|....+.|..++.++-
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666555556666666666666666666666665555544443
No 112
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.66 E-value=19 Score=26.01 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|..++..+.+.|..|+.-+..|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~~~ 34 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhccC
Confidence 3467789999999999999999998876654
No 113
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=45.06 E-value=1.1e+02 Score=26.77 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=36.1
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
..++-||.+|-.+|+-..-.......=.+=|..|.+.+.+-+++-..-..+|.+|..++-+..++
T Consensus 18 NvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~ 82 (99)
T 3ni0_A 18 NTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQE 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777644444444444445566666666666665444445555555555544443
No 114
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.02 E-value=1.7e+02 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185 400 EALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAE 433 (533)
Q Consensus 400 e~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad 433 (533)
..--.+|..=++-.+-+..||..+...+..|...
T Consensus 72 ~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 72 DIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444555566666665555555443
No 115
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.96 E-value=39 Score=25.47 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHH
Q 037185 300 LSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARL 346 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL 346 (533)
+++++.++++|....++.+++ |+.|+-+|++|.--|
T Consensus 5 l~eLE~r~k~le~~naeLEer-----------vstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEER-----------LSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHh
Confidence 445555666666666654444 456677777766544
No 116
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.21 E-value=2.4e+02 Score=29.55 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHhhh
Q 037185 356 LEDKIRQCETEKMEI 370 (533)
Q Consensus 356 lEdeirqleaEK~E~ 370 (533)
||+-++++.+-+.++
T Consensus 43 LE~~l~elsn~ts~v 57 (409)
T 1m1j_C 43 IEGLLQQATNSTGSI 57 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666665544433
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.85 E-value=19 Score=31.29 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 037185 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNT 429 (533)
Q Consensus 397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~ 429 (533)
..+..|-+.|+.|+.+.+.|..+|+.|..++-.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777778888888888888888888888744
No 118
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.65 E-value=34 Score=29.19 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 037185 396 DNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 396 ~~~Ie~LNk~id~Lk~k~e~L 416 (533)
..+...+.+.+|.+|.+|+.|
T Consensus 68 ~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 68 KQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 335566777788888888765
No 119
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.63 E-value=1.4e+02 Score=24.62 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037185 332 MFCLLEKQALLDARLKE 348 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e 348 (533)
|-.+-..|..|+.+++.
T Consensus 9 Lq~~E~~N~~Le~~v~~ 25 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSE 25 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 33444445555555554
No 120
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.46 E-value=29 Score=26.78 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 037185 383 SEINQLKVEVCERDNRIEALNKIMDSLKLKYD 414 (533)
Q Consensus 383 gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e 414 (533)
.+++.|+.|..+....|..|.+.++.|+.+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888877764
No 121
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.44 E-value=2.2e+02 Score=30.06 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHhhHHhh
Q 037185 302 DRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK 320 (533)
+....|.+|+..|.+..+.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4445566666666554443
No 122
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.37 E-value=38 Score=27.53 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 394 ERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 394 ~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
.++++|..|...+..|......|..|...|...|..|.+++
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888887777777777777777777666654
No 123
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.16 E-value=2.2e+02 Score=30.82 Aligned_cols=20 Identities=5% Similarity=0.340 Sum_probs=9.0
Q ss_pred hhHhhhhhhhHHHHHHHHHh
Q 037185 374 HEAQERGMQSEINQLKVEVC 393 (533)
Q Consensus 374 ~~~q~~~L~gEie~Lk~El~ 393 (533)
++-|++...--|++|+.-++
T Consensus 56 L~kqerdv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 33444444444444444443
No 124
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=41.05 E-value=69 Score=25.31 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=23.2
Q ss_pred hhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 373 LHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
.+..+-.+|+..+..-..++...+.+|..|+..|..|..+++.+
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555545555555555666665555555555543
No 125
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.87 E-value=40 Score=24.25 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|..++..+.+.|..|..-+.+|
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~~~ 33 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVGER 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 3467788999999999999999888776654
No 126
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=40.72 E-value=1.5e+02 Score=26.70 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHH
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIE 249 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ 249 (533)
+..|-.|+..|.+|++.+..++-+..
T Consensus 12 ~~KvAElekkv~~lek~lk~~~e~d~ 37 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEIDESES 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 56677778888888888877776653
No 127
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.43 E-value=52 Score=28.60 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=4.9
Q ss_pred HhhhhhHHHHHh
Q 037185 256 EGTHQLQGQLKL 267 (533)
Q Consensus 256 E~ik~LQ~~Le~ 267 (533)
+.+..|..+|+.
T Consensus 33 ~~~~~LE~~Le~ 44 (100)
T 1go4_E 33 EEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 128
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.73 E-value=4.2e+02 Score=29.15 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 037185 401 ALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELE 480 (533)
Q Consensus 401 ~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE 480 (533)
+|.+.|.+||..|+.++.=....+.++.+++..++.|-...++++...+|+- ++|+.++..|+
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S-----------------~ELRRrIqyLK 123 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS-----------------EDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT-----------------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH-----------------HHHHHHHHHHH
Confidence 3445566667777777665667778888888888888777777766655531 25566666666
Q ss_pred HHHHHHH
Q 037185 481 NEVDRQR 487 (533)
Q Consensus 481 ~Eve~Q~ 487 (533)
.+|..|-
T Consensus 124 ekVdnQl 130 (562)
T 3ghg_A 124 RKVIEKV 130 (562)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655553
No 129
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.22 E-value=1.6e+02 Score=24.30 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 037185 470 DELRFRVKELEN 481 (533)
Q Consensus 470 ~eL~~rv~eLE~ 481 (533)
..|+.++..|+.
T Consensus 81 ~~l~~~i~~l~~ 92 (112)
T 1l8d_A 81 AKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.87 E-value=1e+02 Score=29.65 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhh
Q 037185 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKF 321 (533)
Q Consensus 284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~ 321 (533)
..|.+|+-.+..|.++|+.++.||..|+..+..+.++.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46777777778888888888888888877777555554
No 131
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.86 E-value=64 Score=33.29 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=35.5
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
+...|..++..|+.++.+.+..|+.+...+..++.++-.-......+.+.|..|+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445556666666666666667777777777777776666666666666666554
No 132
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=38.79 E-value=2.8e+02 Score=26.79 Aligned_cols=91 Identities=5% Similarity=-0.024 Sum_probs=37.8
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLE 337 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E 337 (533)
+..+|..+.....++...+.+....-++...........+.+-+....++.+++..+..+..+..-=+..-..-|..+..
T Consensus 136 ~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~ 215 (337)
T 2x3v_A 136 FRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGK 215 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333333333222334455555555544444433333333334444444
Q ss_pred HHHHHHHHHHH
Q 037185 338 KQALLDARLKE 348 (533)
Q Consensus 338 ~~~~Le~kL~e 348 (533)
.....+..+..
T Consensus 216 ~~~~~~~~~~~ 226 (337)
T 2x3v_A 216 TTPQYMEGMEQ 226 (337)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 44444444444
No 133
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.63 E-value=66 Score=33.19 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS 301 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls 301 (533)
.++..+++...+|+..++.++.++..++.++-.+.....+|...|..++.++-
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 45556667777777777777888888888888888888889999999888766
No 134
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.51 E-value=3.4e+02 Score=29.48 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL 328 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l 328 (533)
.......+.|-+...-|...+++++.-+.|-+.-.++...|.++...++. .|
T Consensus 466 ~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~----------------------------~~ 517 (592)
T 1f5n_A 466 KSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ----------------------------MM 517 (592)
T ss_dssp HHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDS 408 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~ 408 (533)
.+.--..+|-+.+|..++++ .+.+.+.++-+.++. +|+.....|++ --.+.+..|++.|.+
T Consensus 518 ~~~~~~~~e~~~ql~~kme~--~~~~~~~e~~~~~~~--------------~~~~~~~~~~~---g~~~~~~~~~~ei~~ 578 (592)
T 1f5n_A 518 EQKERSYQEHLKQLTEKMEN--DRVQLLKEQERTLAL--------------KLQEQEQLLKE---GFQKESRIMKNEIQD 578 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------------HHHHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------------HHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 037185 409 LKLK 412 (533)
Q Consensus 409 Lk~k 412 (533)
|+..
T Consensus 579 l~~~ 582 (592)
T 1f5n_A 579 LQTK 582 (592)
T ss_dssp HHHH
T ss_pred HHHh
No 135
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.44 E-value=1.5e+02 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHhh
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAELKIALSD 316 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD 316 (533)
+.++.+.|..|++.+...+..|+.|+..+..
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 3456666666666666666777777776663
No 136
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=38.23 E-value=1.2e+02 Score=29.71 Aligned_cols=62 Identities=21% Similarity=0.384 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 384 EINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 384 Eie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
-|.++..++++++.+|-.--..|..|..++-.... +|..|.++|-+=|.++.--+..+.-|.
T Consensus 85 rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~-------~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 85 RIKQLRIDVDDHESRITANTKAITALNVRVTTAEG-------EIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccHHHHhhhhhhhhhhhhheeecccc-------cchhhhhhhhhhcccccccccchhhhh
Confidence 35566777888888888888888888888744444 444444444444444444444444443
No 137
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=37.82 E-value=2.2e+02 Score=27.17 Aligned_cols=18 Identities=6% Similarity=-0.206 Sum_probs=7.3
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 037185 272 VTTLNAKLDYERMQVLKF 289 (533)
Q Consensus 272 ~a~~k~Kle~e~~ev~kL 289 (533)
+...+.+.+..-+++-.+
T Consensus 159 l~KaK~~Y~~~c~e~e~a 176 (312)
T 3abh_A 159 VEAAKKAHHAACKEEKLA 176 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444443444433
No 138
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=37.60 E-value=12 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKL 279 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl 279 (533)
+.+-.+..+|+.||.+++.+++.+..+.+++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999888877766
No 139
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.53 E-value=1.4e+02 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 459 IAASESSRKLVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 459 ~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
......+.....+|+.+|..|+.|+.--+..|.|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556688999999999999888887765
No 140
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.52 E-value=1.2e+02 Score=31.42 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e 348 (533)
..|.+++..|.+++..|+.++.+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666555
No 141
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=37.30 E-value=2.9e+02 Score=27.11 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037185 286 VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWE 350 (533)
Q Consensus 286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e 350 (533)
+.+-..||+.+++.|.+.+.+|.+-..++++-+-++ .+...+|.-|.-.+..|+.++...+
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Ri----t~~e~~i~~l~~~v~~ld~~vt~~e 139 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRV----TTAEGEIASLQTNVSALDGRVTTAE 139 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhhee----ecccccchhhhhhhhhhcccccccc
Confidence 344556677777777777777776666666655554 3455566666666667777777633
No 142
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=36.85 E-value=2.1e+02 Score=27.93 Aligned_cols=45 Identities=7% Similarity=0.115 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 304 d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
..++.+++..+..+..+..-=+.....-|.++.......+..+..
T Consensus 191 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~ 235 (350)
T 3aco_A 191 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 235 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444444433222333333344444444444433333
No 143
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.81 E-value=1.3e+02 Score=25.99 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHhhhchhHhhhhHHHHHHHHHHHH
Q 037185 317 AEEKFTLDKAQLQSEMFCLLEKQAL 341 (533)
Q Consensus 317 AeeK~s~EKa~l~aEiskL~E~~~~ 341 (533)
+-+|+--||..|...+..|+-.+..
T Consensus 62 dREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 62 AREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544433
No 144
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.60 E-value=75 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhh
Q 037185 248 IERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 248 ~~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
.+++..+.+.-+.++.+++.++.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~ 49 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQT 49 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665666555555554
No 145
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.41 E-value=2e+02 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=22.2
Q ss_pred HHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 037185 253 KELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVE 297 (533)
Q Consensus 253 kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lk 297 (533)
.+.+....++.++..++..+..++.+. .+..+..+.|..++
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~~i----~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRATI----SELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 344555666666666666555554444 44555555555554
No 146
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=35.92 E-value=2.4e+02 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 037185 470 DELRFRVKELENEV 483 (533)
Q Consensus 470 ~eL~~rv~eLE~Ev 483 (533)
++..+++..|+.++
T Consensus 141 s~~~~k~~~~e~~~ 154 (155)
T 2oto_A 141 SQDYNRANVLEKEL 154 (155)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhhc
Confidence 45555666555543
No 147
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.81 E-value=1.9e+02 Score=24.04 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185 399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMA 432 (533)
Q Consensus 399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~a 432 (533)
|..-||+...|..++=.|.-|-..|..++..|.+
T Consensus 41 i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 41 IALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3344556666666666666677667777665544
No 148
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.17 E-value=96 Score=25.99 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHhhHHh
Q 037185 300 LSDRNNEVAELKIALSDAEE 319 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAee 319 (533)
++.+++.|.+||..|+|+-.
T Consensus 54 V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 54 VSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666666543
No 149
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.10 E-value=57 Score=23.85 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHHHHHhhhHHHHHhhHHHH
Q 037185 172 GRVIQYEDKLRVLNLSLQLSEEEVARLKSEL 202 (533)
Q Consensus 172 ~RiielEdELreaneKL~~sEEe~~rlk~el 202 (533)
+|..+||+...+.-.+...++.++.||+.=+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4778899999999999999999999997433
No 150
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.95 E-value=44 Score=27.64 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 037185 390 VEVCERDNRIEALNKIMDSLKLKYDMLMA 418 (533)
Q Consensus 390 ~El~~~~~~Ie~LNk~id~Lk~k~e~L~~ 418 (533)
++|..++..|..|.+.|+.....+..|.+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333333
No 151
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.82 E-value=1.1e+02 Score=23.41 Aligned_cols=26 Identities=4% Similarity=0.217 Sum_probs=11.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185 272 VTTLNAKLDYERMQVLKFQERIAKVET 298 (533)
Q Consensus 272 ~a~~k~Kle~e~~ev~kLqeri~~lkt 298 (533)
+|+.+.+ ...+..+..|+.++..|.+
T Consensus 11 ~AA~k~R-~rKk~~~~~Le~~~~~L~~ 36 (61)
T 1t2k_D 11 AAASRSR-QKRKVWVQSLEKKAEDLSS 36 (61)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4444444 2223334445555444444
No 152
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.41 E-value=45 Score=36.00 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHHHH
Q 037185 377 QERGMQSEINQLKVEVCERDNRIEALNK 404 (533)
Q Consensus 377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk 404 (533)
+..+...+|..|.++...+.++-..+..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 440 (575)
T 2i1j_A 413 EIRAKQEEVSRIQQEVELKDSETRRLQE 440 (575)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444443
No 153
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=34.02 E-value=1.1e+02 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=31.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
+..++.....+|..|++.+..|+..++.|..|+|=--+|+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666788899999999999999999988888876
No 154
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.45 E-value=64 Score=27.37 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=17.5
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 324 DKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 324 EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
|+++|+++|+.|.+....|+..+.+
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666
No 155
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.01 E-value=2e+02 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHH
Q 037185 290 QERIAKVETNLSDRNNEVAELKIAL 314 (533)
Q Consensus 290 qeri~~lkt~Ls~~d~EIr~LK~~l 314 (533)
..+|+.+..++...+.++.+++..+
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443
No 156
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.24 E-value=1.3e+02 Score=24.98 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=33.9
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 292 RIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 292 ri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
.|+.|+..|..-+.||+.|+..+.=-... --.|--||-.|.=++.-|+.||..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd----~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKN----TERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHhhHHHHHhHHHHHHHHHHHHH
Confidence 67777777888888888888776532221 123555666666666667777655
No 157
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=32.21 E-value=50 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|..++..|.+.|..|..-+.+|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~~~ 34 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 3466788999999999999999988777655
No 158
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.15 E-value=2.4e+02 Score=29.53 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e 348 (533)
..|.+++..|.+++..|+.++.+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~ 94 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEE 94 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666
No 159
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=31.78 E-value=2.7e+02 Score=26.11 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHH
Q 037185 302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDA 344 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~ 344 (533)
.++.-++.-+..+.....++-.++..|..+...|......|..
T Consensus 42 ~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 42 VMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555544
No 160
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.06 E-value=2.1e+02 Score=23.20 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.1
Q ss_pred HHHHHHHhHHHHhhhh
Q 037185 356 LEDKIRQCETEKMEIT 371 (533)
Q Consensus 356 lEdeirqleaEK~E~~ 371 (533)
++.+++.+..-..|+.
T Consensus 27 l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 27 VEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 161
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=30.84 E-value=62 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHh
Q 037185 165 ETYEELLGRVIQYEDKLRVLNLSLQLSEEEVAR 197 (533)
Q Consensus 165 ~~~~~L~~RiielEdELreaneKL~~sEEe~~r 197 (533)
..+..-.++.-+||..||.++.++.-+|++|-=
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iKklEdeNPW 39 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIKKLEEDNPW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 345566888999999999999999999998743
No 162
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=30.78 E-value=1.9e+02 Score=26.74 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=6.1
Q ss_pred HHHHHHHhHHHHh
Q 037185 356 LEDKIRQCETEKM 368 (533)
Q Consensus 356 lEdeirqleaEK~ 368 (533)
++.++.++++++.
T Consensus 92 l~~~~~~LeAE~a 104 (146)
T 2xnx_M 92 LSSEKEQLTIEKA 104 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHH
Confidence 4444444554433
No 163
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.76 E-value=41 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 037185 329 QSEMFCLLEKQALLDARLK 347 (533)
Q Consensus 329 ~aEiskL~E~~~~Le~kL~ 347 (533)
.++|..|..+.+-|..+|.
T Consensus 23 ~~~~~~~~~e~~~l~~~~~ 41 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLE 41 (251)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555553
No 164
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=30.45 E-value=1.1e+02 Score=26.52 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHHhhHHh
Q 037185 300 LSDRNNEVAELKIALSDAEE 319 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAee 319 (533)
++.+++.|.+||..|+|+-.
T Consensus 54 V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 54 VSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33455555666666665543
No 165
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.21 E-value=1.3e+02 Score=24.04 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHH--hHHHHHHHHHHHHHH
Q 037185 396 DNRIEALNKIMDSLKLKYDMLMA--EKDEINAKVNTLMAE 433 (533)
Q Consensus 396 ~~~Ie~LNk~id~Lk~k~e~L~~--EK~~l~~kv~~L~ad 433 (533)
+.+|+.|.+....|+.+++.|-- |...+...|..|-.+
T Consensus 24 ggrieelkkkweelkkkieelggggevkkveeevkkleee 63 (67)
T 1lq7_A 24 GGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEE 63 (67)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 56788888888888888887653 555566666544433
No 166
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.16 E-value=3e+02 Score=29.43 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e 348 (533)
+.|.+++..|.+++..|+.++.+
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555
No 167
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.07 E-value=3.5e+02 Score=25.35 Aligned_cols=114 Identities=11% Similarity=0.150 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~ 405 (533)
..+..+-.+++.++..-.--+....+-...+|++++--+.=..+ =|+. -......++|..+..+
T Consensus 34 d~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~--------------~~~~--f~~e~~~~E~~~l~~N 97 (170)
T 3l4q_C 34 DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKE--------------YLER--FRREGNEKEMQRILLN 97 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTG--------------GGSS--SSSCCCSSSTTTTTHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHH--HHhhcCHHHHHHHHHH
Confidence 45566666677776666666666555555555554211100000 0000 0001334566666667
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
.+.|+++++.|-.=+..|+.-+....++.+.-|..|.-+--.|.||+-..
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~r 147 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIR 147 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77788888777777777777777777777766666666666666665433
No 168
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.56 E-value=1.5e+02 Score=24.46 Aligned_cols=58 Identities=21% Similarity=0.140 Sum_probs=35.1
Q ss_pred HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
-++..-|.+++.+-.-|-+++.||.+=.--.-|| +.++...+.-|.+|...++|+---
T Consensus 10 ~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKL-------e~~~~~~q~s~~~l~k~~~d~~~~ 67 (74)
T 2q6q_A 10 FKLREKQNEIFELKKIAETLRSKLEKYVDITKKL-------EDQNLNLQIKISDLEKKLSDANST 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHhhccccchh
Confidence 4455556666666666777777775544333444 445556666788888888877543
No 169
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.52 E-value=87 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
+|++.|..|++.+...+.+|+.|+..+.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 3444444444444444444554444443
No 170
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.31 E-value=1.2e+02 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185 288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK 320 (533)
+|.+++.+|.++|..++.....|=..+..++.|
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~K 36 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQK 36 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655555555544443
No 171
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=29.21 E-value=3e+02 Score=24.27 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhH
Q 037185 341 LLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK 420 (533)
Q Consensus 341 ~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK 420 (533)
+++.++++.=..+--+|++|-||.+-+ ...+.....|-+....+.....-+---.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~sQLktTn----------------------DdvA~NTTdIaTnT~NIa~nT~NIATNTTNI 60 (107)
T 2wps_A 3 QIEDKIEEILSKIYHIENEIARIKKLI----------------------EKVDQNTADITTNTNSINQNTTDIATNTTNI 60 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------chhhhhhhhhhhccchhhccchhhhccccch
Confidence 345555554444444555555555522 2345666777777777776666555556667
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 421 DEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVI 490 (533)
Q Consensus 421 ~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i 490 (533)
..|.+-|..|..|+.+ .|+||-++.--||.||-|-+..|
T Consensus 61 tNLtdsV~~L~dDAed-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 99 (107)
T 2wps_A 61 NNLSDSITTLMKQIED-------------------------------KIEEILSKIYHIENEIARIKKLI 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666544 34566667777777777665544
No 172
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.10 E-value=2.7e+02 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=15.5
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037185 324 DKAQLQSEMFCLLEKQALLDARLKEWE 350 (533)
Q Consensus 324 EKa~l~aEiskL~E~~~~Le~kL~e~e 350 (533)
.+.+++.++..|+.....|...+.++.
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~~ 35 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666543
No 173
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=28.40 E-value=74 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHhhHHh
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALSDAEE 319 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAee 319 (533)
+-+|||.++.+-..++|.+..++..+.++++
T Consensus 40 vldRlA~lEqdE~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 40 LLGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999888877777654
No 174
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=28.16 E-value=59 Score=23.52 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 408 SLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
.|..|.+.|..++..+.++|..|+.-+..|
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~~~ 34 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHccC
Confidence 466788999999999999999988766543
No 175
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.07 E-value=2.6e+02 Score=23.32 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHH
Q 037185 288 KFQERIAKVETNLSDRNNEVAELK 311 (533)
Q Consensus 288 kLqeri~~lkt~Ls~~d~EIr~LK 311 (533)
||++-|.+++..-..++..|.-|+
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444334444444333
No 176
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.93 E-value=2.6e+02 Score=23.63 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 037185 389 KVEVCERDNRIEALNKIMDSLKLKYDMLMA 418 (533)
Q Consensus 389 k~El~~~~~~Ie~LNk~id~Lk~k~e~L~~ 418 (533)
..++..+.++|+.|.+.|+.++.++..|..
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356667777777777777777777766543
No 177
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=27.82 E-value=1.9e+02 Score=23.53 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=28.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185 387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM 431 (533)
Q Consensus 387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ 431 (533)
.+..-+...+..+..+..++...-.+|..|+.=|-.|+.+|++--
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555666666666677888888877777776543
No 178
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.70 E-value=3.1e+02 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=10.3
Q ss_pred HHHhhhhhHHHHHhhhhhHHHH
Q 037185 254 ELEGTHQLQGQLKLAQDDVTTL 275 (533)
Q Consensus 254 l~E~ik~LQ~~Le~~q~e~a~~ 275 (533)
+.+..+.++.++..++..++.+
T Consensus 14 l~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 14 LAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444444444
No 179
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.61 E-value=1.5e+02 Score=31.17 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhhHHHHHhhhh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
+++..+.+.-+.++.+++.++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~ 52 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRH 52 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445544444444444443
No 180
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.21 E-value=83 Score=23.00 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
..|+.|.+.|..++..|.++|..|..-+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4577788999999999999998887654
No 181
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.01 E-value=1.3e+02 Score=26.59 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=5.0
Q ss_pred hhhhHHHHHhhhh
Q 037185 258 THQLQGQLKLAQD 270 (533)
Q Consensus 258 ik~LQ~~Le~~q~ 270 (533)
+++||+++..-..
T Consensus 37 ieeLQ~Ei~~~E~ 49 (107)
T 2k48_A 37 LQELQENITAHEQ 49 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444433333333
No 182
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.90 E-value=97 Score=23.71 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 457 ELIAASESSRKLVDELRFRVKELENEVDRQR 487 (533)
Q Consensus 457 ~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~ 487 (533)
+|.+.++-|-++|..|...|..||.++..++
T Consensus 2 ~~~~~aefAERsV~KLek~ID~LEdeL~~eK 32 (52)
T 2z5i_A 2 ELLSKNYHLENEVARLKKLVDDLEDELYAQK 32 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4677888899999999999999999887664
No 183
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.89 E-value=83 Score=21.91 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhH
Q 037185 167 YEELLGRVIQYEDKLRVLNLSLQLSE 192 (533)
Q Consensus 167 ~~~L~~RiielEdELreaneKL~~sE 192 (533)
+++|-++-..||..|+...-||+++|
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999998888888876
No 184
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.85 E-value=65 Score=24.14 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=24.3
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHhhh
Q 037185 162 EANETYEELLGRVIQYEDKLRVLNLSLQLS 191 (533)
Q Consensus 162 ~~~~~~~~L~~RiielEdELreaneKL~~s 191 (533)
+-+.+.++|-.||..||..|-...+.|+++
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678899999999999998887777653
No 185
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.76 E-value=72 Score=23.06 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHhhHHHHHHHHHHHhhhHHHHHhhHH
Q 037185 172 GRVIQYEDKLRVLNLSLQLSEEEVARLKS 200 (533)
Q Consensus 172 ~RiielEdELreaneKL~~sEEe~~rlk~ 200 (533)
+|..+|||...+.-.+...+|.+++||+.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 36778888888888888888888888864
No 186
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.73 E-value=1.2e+02 Score=23.31 Aligned_cols=42 Identities=7% Similarity=0.237 Sum_probs=19.0
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 037185 270 DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI 312 (533)
Q Consensus 270 ~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~ 312 (533)
+-+|+.+.+ ...+..+..|+.++..|.+.-+.+..+|..|..
T Consensus 9 Nr~AA~k~R-~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 9 NRIAASKSR-KRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555 233344555555555555543333333333333
No 187
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.73 E-value=2.1e+02 Score=23.91 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHH
Q 037185 304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLD 343 (533)
Q Consensus 304 d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le 343 (533)
+.+.++=++.+-+.-.++-.|++.+...|..|.+...-|+
T Consensus 34 ~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 34 EEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666666666666666655554443
No 188
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.48 E-value=87 Score=22.89 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185 468 LVDELRFRVKELENEVDRQRMVILD 492 (533)
Q Consensus 468 ~v~eL~~rv~eLE~Eve~Q~~~i~e 492 (533)
.|.+|-.+..+||.||.|-+..+-+
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 5778888889999999988876654
No 189
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.31 E-value=99 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.424 Sum_probs=21.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185 410 KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452 (533)
Q Consensus 410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~ 452 (533)
+.++..|..++..+...+..+.+....-| .-....+|+..||
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~a~L~~~~-~~~~~~~hI~~Lh 48 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDALAKLKNRD-AKQTVQKHIDLLH 48 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHH
Confidence 33334444444444444444444443221 2335788998888
No 190
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.25 E-value=1.1e+02 Score=25.43 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=0.0
Q ss_pred hhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185 260 QLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR 303 (533)
Q Consensus 260 ~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~ 303 (533)
+|+.+|+.++.||+.++-+.+.--.++..++.|-+.+=.+|..|
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.15 E-value=28 Score=26.94 Aligned_cols=44 Identities=18% Similarity=0.408 Sum_probs=26.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 272 VTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 272 ~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
++.++++.-...+|.+||..-+++++.+-..++..|..|+..++
T Consensus 5 vaqlknrvayklkenaklenivarlendnanlekdianlekdia 48 (56)
T 3he4_A 5 VAQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIA 48 (56)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45566665555578888888888888776666666666555544
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.06 E-value=1.8e+02 Score=31.05 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhh
Q 037185 248 IERLMKELEGTHQLQGQLKLAQD 270 (533)
Q Consensus 248 ~~ei~kl~E~ik~LQ~~Le~~q~ 270 (533)
.+++..+.+.-+.+|.+++.++.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~ 54 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNK 54 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666555554
No 193
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=25.99 E-value=2.3e+02 Score=21.96 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 037185 431 MAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEE 496 (533)
Q Consensus 431 ~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEe 496 (533)
+.++..|...|.+++..+..|+--- ..+...|.+-..-+.-.|.-|+.-..-+-.+..+
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF-------~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~ 62 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMF-------MDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988887333 2333445555555555555555554444444433
No 194
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.87 E-value=79 Score=22.74 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037185 467 KLVDELRFRVKELENEVDRQRMVIL 491 (533)
Q Consensus 467 ~~v~eL~~rv~eLE~Eve~Q~~~i~ 491 (533)
..|++|-.+..+||.||.|-+..+.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3678888889999999998876653
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.83 E-value=2.3e+02 Score=30.38 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e 348 (533)
..|.+++..|.+++..|+.++.+
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555
No 196
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.80 E-value=2.2e+02 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=17.3
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185 324 DKAQLQSEMFCLLEKQALLDARLKE 348 (533)
Q Consensus 324 EKa~l~aEiskL~E~~~~Le~kL~e 348 (533)
+...+.+++..|.+++..|+.++.+
T Consensus 69 ~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 2dq3_A 69 DTTEIQNRVKELKEEIDRLEEELRK 93 (425)
T ss_dssp CTTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777
No 197
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.80 E-value=2e+02 Score=22.28 Aligned_cols=31 Identities=6% Similarity=0.096 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVN 428 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~ 428 (533)
.|..|+-+++.|..+.+.|+++...+...|.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 198
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.76 E-value=2.8e+02 Score=24.30 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=42.7
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185 416 LMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVI 490 (533)
Q Consensus 416 L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i 490 (533)
|-+||+.+-=.|++|+-.+. .|++.+.|++=+.-+.....+......+.|...+..|...+......|
T Consensus 21 LDNEKsal~YqVdlLKD~LE-------e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLL-------ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred hccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577777777777775544 555556666666655555566666777777777777766654333333
No 199
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.74 E-value=3.1e+02 Score=23.01 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=32.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185 412 KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455 (533)
Q Consensus 412 k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~ 455 (533)
++..+..+.+.|...+..=+..|-.|+++|..|.+.-..|....
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S 74 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34555666677777777777788899999988888777776554
No 200
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.74 E-value=1.2e+02 Score=24.93 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185 340 ALLDARLKEWELQGKALEDKIRQCET 365 (533)
Q Consensus 340 ~~Le~kL~e~e~~~~~lEdeirqlea 365 (533)
..|+.+|.++|.+.-+.|+-|.+|..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~ 35 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSE 35 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666644444444443333333
No 201
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=24.58 E-value=59 Score=22.74 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHh
Q 037185 46 EDFYHLYQSLAERYDHLTGEL 66 (533)
Q Consensus 46 ee~yr~yraLAeryd~~~~el 66 (533)
|-+-++-|||-+|||++-.-|
T Consensus 7 eay~~atRALHeRFDRLEr~l 27 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERML 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999986544
No 202
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=24.51 E-value=3.2e+02 Score=23.13 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Q 037185 429 TLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSL 508 (533)
Q Consensus 429 ~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfsl 508 (533)
..+.++.+|+..|.+++.-+.+||--- ..+...|.+-..-+...|.-|+.-..-+. .|-++|--+.
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF-------~dla~lV~eQge~Id~Ie~nv~~a~~~v~-------~g~~eL~kA~ 76 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMF-------MDMAMLVESQGEMIDRIEYNVEHAVDYVE-------RAVSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 356788999999999999998887443 22333444444444445544444333333 3444444445
Q ss_pred HhhhhhHHHHHH
Q 037185 509 EHYRSGYQELRQ 520 (533)
Q Consensus 509 ehyr~~y~~L~~ 520 (533)
.|.|+.-++.+-
T Consensus 77 ~yqk~~rkk~~i 88 (109)
T 3hd7_B 77 KYQSKARRKKIM 88 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhccCccee
Confidence 555555444443
No 203
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.37 E-value=1.6e+02 Score=26.25 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHhhHH
Q 037185 302 DRNNEVAELKIALSDAE 318 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAe 318 (533)
.+++.|.+||..|+|+-
T Consensus 73 ~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 73 SIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555443
No 204
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.35 E-value=1.4e+02 Score=31.08 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh
Q 037185 249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS 301 (533)
Q Consensus 249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls 301 (533)
+|+..+.+.+++|+..++..+.+....+.+|-.+-.+-.+|...|..++.++.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 34455556667777777777777777777887777788888899988888776
No 205
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.30 E-value=1e+02 Score=22.33 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185 407 DSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437 (533)
Q Consensus 407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR 437 (533)
..|..|.+.|.+++..+.+.|..|..-+.+|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg~r 34 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 4567788999999999999998887766554
No 206
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.17 E-value=6.8e+02 Score=26.85 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 037185 402 LNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQ 443 (533)
Q Consensus 402 LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~q 443 (533)
+.++|..|+..++.++.==.+...-|..|..-.+.|...+..
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~ 134 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKD 134 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCc
Confidence 455666666666666555555566666666666666544443
No 207
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.01 E-value=3e+02 Score=30.09 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHhHHhHHHHHHHHHHHHHHh
Q 037185 380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLK-------YDMLMAEKDEINAKVNTLMAEA 434 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k-------~e~L~~EK~~l~~kv~~L~ad~ 434 (533)
...+.++...-+...-.++++..+++++....+ |+.++.+.|..|-.|..+++.+
T Consensus 311 ~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~ 372 (551)
T 2b5u_A 311 DATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEI 372 (551)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhh
Confidence 334444444444444455555556666655444 6677788888888888887743
No 208
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.95 E-value=1.7e+02 Score=29.82 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037185 332 MFCLLEKQALLDARLKE 348 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e 348 (533)
+++|++++..|+..+..
T Consensus 7 ~~~~~~~~~~~e~~i~~ 23 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVS 23 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45666666666665555
No 209
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.87 E-value=33 Score=24.71 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEAR 435 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~ 435 (533)
++.+|.|+..|..+++.+.+++..|..++.
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~l~ 35 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKLVG 35 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777777777788888888777766653
No 210
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.77 E-value=1.9e+02 Score=22.14 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 037185 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTL 430 (533)
Q Consensus 398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L 430 (533)
.|..|....+.|..+...|.++...|...+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 211
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.55 E-value=2.5e+02 Score=27.04 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=4.5
Q ss_pred hhHHHHHhhhh
Q 037185 260 QLQGQLKLAQD 270 (533)
Q Consensus 260 ~LQ~~Le~~q~ 270 (533)
..+++++.++.
T Consensus 88 ~a~~~~~~a~~ 98 (369)
T 4dk0_A 88 ARKTAYDVALS 98 (369)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 212
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.42 E-value=85 Score=22.71 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.6
Q ss_pred HHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185 172 GRVIQYEDKLRVLNLSLQLSEEEVARLK 199 (533)
Q Consensus 172 ~RiielEdELreaneKL~~sEEe~~rlk 199 (533)
+|..++||.+.+.-.+...++.+++|++
T Consensus 1 ~RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 1 MKLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678899999988889999999999886
No 213
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.23 E-value=2.5e+02 Score=22.91 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHhhHHhhh
Q 037185 302 DRNNEVAELKIALSDAEEKF 321 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK~ 321 (533)
.+..+|.+|++.+...+..+
T Consensus 26 ~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 214
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.15 E-value=1.5e+02 Score=22.30 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=19.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185 390 VEVCERDNRIEALNKIMDSLKLKYDML 416 (533)
Q Consensus 390 ~El~~~~~~Ie~LNk~id~Lk~k~e~L 416 (533)
+|+...+.++.+|.+.++.||+++.-|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777888888888888877544
No 215
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.70 E-value=2.4e+02 Score=21.03 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 037185 402 LNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQ 443 (533)
Q Consensus 402 LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~q 443 (533)
+...+...+.++..+..+...+...+..+..++.+=.+.|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 216
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.67 E-value=4.1e+02 Score=23.64 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=43.3
Q ss_pred hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh---hchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHH
Q 037185 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVE---TNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFC 334 (533)
Q Consensus 258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lk---t~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEisk 334 (533)
.+.|.+++..+.+ +=..+|+.++.+.-.-+.+++.+. .+++++-.+|.+ ..+.++=|.+...-+.+
T Consensus 11 l~~Leae~q~L~~---~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~--------~~~~~~yk~~y~~l~k~ 79 (119)
T 3etw_A 11 LQALDAEYQNLAN---QEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQA--------EANTRFYKSQYQELASK 79 (119)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhccchHHHHHHHHHHH
Confidence 3444444444333 334455555543333334444332 333333333333 22555557788888888
Q ss_pred HHHHHHHHHHHHHH
Q 037185 335 LLEKQALLDARLKE 348 (533)
Q Consensus 335 L~E~~~~Le~kL~e 348 (533)
+......|+..++.
T Consensus 80 Y~~~~keLd~~ik~ 93 (119)
T 3etw_A 80 YEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888887
No 217
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.62 E-value=55 Score=23.14 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhh
Q 037185 286 VLKFQERIAKVET 298 (533)
Q Consensus 286 v~kLqeri~~lkt 298 (533)
|.+||+|+.+|+.
T Consensus 15 vq~lq~r~drle~ 27 (32)
T 2akf_A 15 VQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566777766654
No 218
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.53 E-value=2.5e+02 Score=26.11 Aligned_cols=66 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHH-------HHHHHHHHHHHHHhhchh----hhhHHHHH
Q 037185 244 SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYER-------MQVLKFQERIAKVETNLS----DRNNEVAE 309 (533)
Q Consensus 244 l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~-------~ev~kLqeri~~lkt~Ls----~~d~EIr~ 309 (533)
|+.++++..++++...+-+.+...+..++.+.+..+.... ..|.+|...|..+.+++. ..++++++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.46 E-value=3e+02 Score=26.39 Aligned_cols=16 Identities=6% Similarity=-0.002 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhHhhhh
Q 037185 498 REAIRQLCFSLEHYRS 513 (533)
Q Consensus 498 REAIRQLCfslehyr~ 513 (533)
..+-...||.+|-|..
T Consensus 65 ~~~~e~i~i~~DL~e~ 80 (190)
T 4emc_A 65 SQQAENSEVIKDLYEY 80 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH
Confidence 3555677898887753
No 220
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.17 E-value=1.8e+02 Score=24.89 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHHHhhhhhHH
Q 037185 380 GMQSEINQLKVEVCERDNRI 399 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~~~I 399 (533)
.--.||..|+.+|..++..|
T Consensus 72 ~YEeEI~rLr~eLe~r~~q~ 91 (92)
T 3vp9_A 72 AYEEEIKHLKLGLEQRDHQI 91 (92)
T ss_dssp HHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 33457778888887776554
No 221
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.15 E-value=1.7e+02 Score=22.29 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhh
Q 037185 222 MERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQ 269 (533)
Q Consensus 222 ~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q 269 (533)
..+..|.+||+.|..|| +++....+..+.++.+|+..-
T Consensus 9 fAERsV~KLek~ID~LE----------deL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLE----------DELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHH
Confidence 34666777776666666 344445556666666655543
No 222
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.08 E-value=3.6e+02 Score=22.76 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 037185 161 EEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYV 234 (533)
Q Consensus 161 e~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v 234 (533)
+.....|++-...--+|=.|+++.+.|+...|-+ +.++++-+-+....+..-...|+.-..+|..||.++
T Consensus 8 Ekd~~~~ee~~~~~E~L~qEi~~Lr~kv~elEnE----rlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 8 EKEQREQEEKQRKAEELLQELRHLKIKVEELENE----RNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
No 223
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=22.00 E-value=46 Score=31.37 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=9.8
Q ss_pred HHHHHhhhhhhHh
Q 037185 54 SLAERYDHLTGEL 66 (533)
Q Consensus 54 aLAeryd~~~~el 66 (533)
.|||+||..+.-+
T Consensus 7 ~~a~~~~~~r~~I 19 (171)
T 3hie_A 7 FLAEQYERDRKAI 19 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6899999866443
No 224
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.94 E-value=1.3e+02 Score=23.62 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=23.1
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q 037185 270 DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIAL 314 (533)
Q Consensus 270 ~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~l 314 (533)
+-.|+.+.+. ..+..+..|+..+..|+..-+.+..+|..|++.|
T Consensus 17 NreAArrsR~-RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 17 NTEAARRSRA-RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555552 3334456666666666655555555555555544
No 225
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=21.93 E-value=4.6e+02 Score=24.04 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHH
Q 037185 380 GMQSEINQLKVEVCERD-----NRIEALNKIMDSLKLKYDM 415 (533)
Q Consensus 380 ~L~gEie~Lk~El~~~~-----~~Ie~LNk~id~Lk~k~e~ 415 (533)
.||.-||.|+.+...|+ +.++.+.++|+.++..+..
T Consensus 32 DLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~ 72 (141)
T 3okq_A 32 DLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLK 72 (141)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666654 4555666666655555443
No 226
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=21.26 E-value=5.1e+02 Score=24.24 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=49.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185 326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405 (533)
Q Consensus 326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~ 405 (533)
-..-.||..|.+-...|..+|.+....+.-|+..++...+... .+-+.
T Consensus 85 e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~r--------------------------------elERe 132 (170)
T 3l4q_C 85 EGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNR--------------------------------EIDKR 132 (170)
T ss_dssp CCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHH
Confidence 3445588889999999999999955555555555554444333 33345
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 037185 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG 442 (533)
Q Consensus 406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~ 442 (533)
+..||+++=.|...+|---.|+ .-..-|+.+|+
T Consensus 133 mnsLKPeL~qL~K~rD~yl~wL----~~~Gv~q~~in 165 (170)
T 3l4q_C 133 MNSLKPDLMQLRKIRDQYLVWL----TQKGARQKKIN 165 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHTTCCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHH----HHcCCCHHHHH
Confidence 5556666667777776666664 33344555553
No 227
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.10 E-value=3.5e+02 Score=22.21 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHhh
Q 037185 185 NLSLQLSEEEVARL 198 (533)
Q Consensus 185 neKL~~sEEe~~rl 198 (533)
-.||+.+|.+|..|
T Consensus 6 ~~kLq~~E~~N~~L 19 (72)
T 3cve_A 6 HMKLQEVEIRNKDL 19 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 34555555554444
No 228
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.78 E-value=4.1e+02 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHhhH
Q 037185 287 LKFQERIAKVETNLSDRNNEVAELKIALSDA 317 (533)
Q Consensus 287 ~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDA 317 (533)
..|.++|+.+...+..++..|..++..+...
T Consensus 91 ~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 121 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLDFKIDNYDTHLIPA 121 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433
No 229
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.77 E-value=2.4e+02 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185 399 IEALNKIMDSLKLKYDMLMAEKDEINAKV 427 (533)
Q Consensus 399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv 427 (533)
|..|....+.|+.+-..|..+...|...+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 230
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.50 E-value=2.1e+02 Score=24.35 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185 224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR 303 (533)
Q Consensus 224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~ 303 (533)
+.+.-.||+.|.+|+ .+|.+......-|.-+.....+ +....-...++..|+.+...+.-+
T Consensus 14 eqRkkkL~~Ki~el~----------~ei~ke~~~regl~Km~~vY~~---------nP~~GD~~s~~~~L~e~~~kid~L 74 (98)
T 2ke4_A 14 EQQRKRLQQQLEERS----------RELQKEVDQREALKKMKDVYEK---------TPQMGDPASLEPQIAETLSNIERL 74 (98)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHTHHHHHHHHHHH---------CGGGCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHc---------CCccCCHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhHHhh
Q 037185 304 NNEVAELKIALSDAEEK 320 (533)
Q Consensus 304 d~EIr~LK~~lsDAeeK 320 (533)
..++.++...|++++..
T Consensus 75 ~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 75 KLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
No 231
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.47 E-value=1.4e+02 Score=20.97 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 037185 399 IEALNKIMDSLKLK 412 (533)
Q Consensus 399 Ie~LNk~id~Lk~k 412 (533)
|-+|.|.|+.||.+
T Consensus 4 iaalkqeiaalkke 17 (33)
T 4dzn_A 4 IAALKQEIAALKKE 17 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33343444433333
No 232
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.29 E-value=5.2e+02 Score=25.60 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 037185 220 LEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETN 299 (533)
Q Consensus 220 Le~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~ 299 (533)
+-...++...+=..+.=|++.+ +....||..+.-+|.+|+.+-..+-+ |||.++.+
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK---~ma~sEI~EID~KI~~L~~mR~~vl~---------------------RLA~lEqd 206 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQK---NSTLSEIRDIEVEVENLRQKKEKLLG---------------------KIANIEQN 206 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhh
Q ss_pred hhhhhHHHHHHHHHHhhHHh
Q 037185 300 LSDRNNEVAELKIALSDAEE 319 (533)
Q Consensus 300 Ls~~d~EIr~LK~~lsDAee 319 (533)
-..++|++..++..+.++++
T Consensus 207 El~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 207 QLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 233
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.16 E-value=98 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185 408 SLKLKYDMLMAEKDEINAKVNTLMAEARS 436 (533)
Q Consensus 408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s 436 (533)
.|..|.+.|..++..|.+.|..|...+.+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 46677888999999999999888766543
No 234
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.02 E-value=2.2e+02 Score=24.65 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHH
Q 037185 223 ERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTL 275 (533)
Q Consensus 223 ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~ 275 (533)
++.-+..|..-|..||...-.|..|.+-..+-.+-++.|+..|+.|+..|..+
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777888888777777776666666677999999999998866555
Done!