Query 037185
Match_columns 533
No_of_seqs 98 out of 100
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 78.7 12 0.00087 28.6 20.2 38 413-450 118-155 (185)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 68.5 18 0.0013 29.0 10.0 13 352-364 16-28 (133)
3 d2nr5a1 a.25.6.1 (A:1-64) Hypo 65.8 2.4 0.00018 31.7 3.5 36 490-525 14-60 (64)
4 d1seta1 a.2.7.1 (A:1-110) Sery 65.4 11 0.00078 29.9 7.8 29 243-271 22-50 (110)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 58.9 32 0.0023 27.4 9.7 27 289-315 93-119 (133)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 57.8 40 0.0029 26.4 10.6 33 332-364 67-99 (107)
7 d1gqea_ e.38.1.1 (A:) Polypept 55.0 85 0.0062 29.8 13.6 55 289-349 11-67 (362)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 54.1 46 0.0033 26.0 10.3 27 387-413 69-95 (107)
9 d1gqea_ e.38.1.1 (A:) Polypept 27.5 2.4E+02 0.018 26.4 11.9 12 284-295 55-66 (362)
10 d1k4ta1 a.2.8.1 (A:641-712) Eu 27.4 90 0.0065 23.9 6.9 54 251-304 4-69 (72)
11 d1qvra2 c.37.1.20 (A:149-535) 26.4 1E+02 0.0073 29.2 8.8 9 19-27 30-38 (387)
12 d1e52a_ a.2.9.1 (A:) C-termina 24.4 53 0.0039 23.8 4.8 39 302-346 14-52 (56)
13 d1vp7a_ a.7.13.1 (A:) Exonucle 23.6 1E+02 0.0073 22.9 6.5 54 223-276 8-61 (68)
14 d1cxzb_ a.2.6.1 (B:) Protein k 20.6 1E+02 0.0075 24.2 6.2 26 400-425 59-84 (86)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=78.68 E-value=12 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=16.0
Q ss_pred HHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 037185 413 YDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRK 450 (533)
Q Consensus 413 ~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~q 450 (533)
++.+......+...+..+...+......+.++..-+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (185)
T d2ap3a1 118 HSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKA 155 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHH
Confidence 33333333333344444444444555555444443333
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=68.46 E-value=18 Score=28.98 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=4.6
Q ss_pred hhhhHHHHHHHhH
Q 037185 352 QGKALEDKIRQCE 364 (533)
Q Consensus 352 ~~~~lEdeirqle 364 (533)
+...+..++.++.
T Consensus 16 ~l~~l~~~i~~l~ 28 (133)
T d1fxkc_ 16 QVELIQQQMEAVR 28 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 3
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=65.83 E-value=2.4 Score=31.66 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=26.7
Q ss_pred HhhhhhHHHHHHHHHhhh-----------hHhhhhhHHHHHHHHcCC
Q 037185 490 ILDAAEEKREAIRQLCFS-----------LEHYRSGYQELRQAFLGY 525 (533)
Q Consensus 490 i~e~aEeKREAIRQLCfs-----------lehyr~~y~~L~~~~~Gh 525 (533)
..+-|=+|-.||||||=. .+-+-++.++|...+-|.
T Consensus 14 maeealgklkairqlcgaedssdssdmqeveiwtnrikeledwlwge 60 (64)
T d2nr5a1 14 MAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGE 60 (64)
T ss_dssp HHHHHHHHHHHHHHTTTTTCC----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCccCCcchhhHHHHHHHHHHHHHHHHhhcC
Confidence 356677899999999965 445677777777776664
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=65.43 E-value=11 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHhhhhhHHHHHhhhhh
Q 037185 243 ESNFEIERLMKELEGTHQLQGQLKLAQDD 271 (533)
Q Consensus 243 ~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e 271 (533)
.+++..+++..+.+..+.++.+++.++.+
T Consensus 22 ~~~~~ld~i~~ld~~rr~l~~~~e~l~~~ 50 (110)
T d1seta1 22 GVALDLEALLALDREVQELKKRLQEVQTE 50 (110)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777777777766663
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=58.88 E-value=32 Score=27.41 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=13.1
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185 289 FQERIAKVETNLSDRNNEVAELKIALS 315 (533)
Q Consensus 289 Lqeri~~lkt~Ls~~d~EIr~LK~~ls 315 (533)
|..||..++..+..+..++.+++..+.
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~ 119 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444445554444444
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=57.84 E-value=40 Score=26.39 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 037185 332 MFCLLEKQALLDARLKEWELQGKALEDKIRQCE 364 (533)
Q Consensus 332 iskL~E~~~~Le~kL~e~e~~~~~lEdeirqle 364 (533)
+..|.+....++..++.++.+...++.++..+.
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~ 99 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333444443333
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=55.02 E-value=85 Score=29.77 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHhh--chhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185 289 FQERIAKVET--NLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349 (533)
Q Consensus 289 Lqeri~~lkt--~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~ 349 (533)
|..|+..+.. ++.....++.+|+..++|-.==--+++++ +|+.+.+.|+..+..|
T Consensus 11 L~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAq------kl~KE~s~L~~iVe~~ 67 (362)
T d1gqea_ 11 LTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQ------ALGKERSSLEAVVDTL 67 (362)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHH------HHHHHHHHHHHHHHHH
Confidence 3334444443 23455556667777776543222333443 4555555555555544
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=54.10 E-value=46 Score=25.99 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185 387 QLKVEVCERDNRIEALNKIMDSLKLKY 413 (533)
Q Consensus 387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~ 413 (533)
.|+..+...+.+|..|.+.+..+..++
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333333444433333333333
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=27.45 E-value=2.4e+02 Score=26.44 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 037185 284 MQVLKFQERIAK 295 (533)
Q Consensus 284 ~ev~kLqeri~~ 295 (533)
+|...|..-|..
T Consensus 55 KE~s~L~~iVe~ 66 (362)
T d1gqea_ 55 KERSSLEAVVDT 66 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 10
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.44 E-value=90 Score=23.90 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhHHHHHhhhhhHHHHhhh------------hHHHHHHHHHHHHHHHHHhhchhhhh
Q 037185 251 LMKELEGTHQLQGQLKLAQDDVTTLNAK------------LDYERMQVLKFQERIAKVETNLSDRN 304 (533)
Q Consensus 251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~K------------le~e~~ev~kLqeri~~lkt~Ls~~d 304 (533)
+.+|++.|..-+.+|..++.++-.+++- +++-++.+..|.+.+..|+-+-.|++
T Consensus 4 MenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTDke 69 (72)
T d1k4ta1 4 MMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3445566555555555555555554432 34455677777777777776655554
No 11
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=26.44 E-value=1e+02 Score=29.20 Aligned_cols=9 Identities=0% Similarity=0.530 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 037185 19 SVKQMQKLI 27 (533)
Q Consensus 19 ~vk~mlkli 27 (533)
.|.+|+.++
T Consensus 30 ei~~~~~~L 38 (387)
T d1qvra2 30 EIRRVIQIL 38 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 12
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=24.40 E-value=53 Score=23.83 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHH
Q 037185 302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARL 346 (533)
Q Consensus 302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL 346 (533)
+++..|+.|+..|-.|.+++-+|+|. .+-..+..|+..|
T Consensus 14 el~k~i~~Le~~M~~aa~~l~FE~AA------~~RD~I~~l~~~l 52 (56)
T d1e52a_ 14 ALQQKIHELEGLMMQHAQNLEFEEAA------QIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHT------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH------HHHHHHHHHHHHH
Confidence 56677999999999999999999997 4444444444433
No 13
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=23.60 E-value=1e+02 Score=22.88 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHh
Q 037185 223 ERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLN 276 (533)
Q Consensus 223 ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k 276 (533)
++.-+..|..-|..||...-.|..|.+-..+-.+-++.++..|..|...|..+.
T Consensus 8 fEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~ 61 (68)
T d1vp7a_ 8 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLE 61 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888877666666655555555678999999998888555443
No 14
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.60 E-value=1e+02 Score=24.24 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHH
Q 037185 400 EALNKIMDSLKLKYDMLMAEKDEINA 425 (533)
Q Consensus 400 e~LNk~id~Lk~k~e~L~~EK~~l~~ 425 (533)
+.+.-.+.....++..|..|..++++
T Consensus 59 ~~V~~eL~~sN~kL~~L~~eL~eLna 84 (86)
T d1cxzb_ 59 GPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444455555555444443
Done!