BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037186
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DBL|A Chain A, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4DBL|B Chain B, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4DBL|F Chain F, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4DBL|G Chain G, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4FI3|A Chain A, Structure Of Vitamin B12 Transporter Btucd-F In A
           Nucleotide-Bound State
 pdb|4FI3|B Chain B, Structure Of Vitamin B12 Transporter Btucd-F In A
           Nucleotide-Bound State
          Length = 349

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 25  LMIIGAILARYFKQWAPIWFYSHTLVQSLGFVLGVAGVICGLV 67
           ++ +G I AR      P+WF+ + LV + G+++GV+  + G +
Sbjct: 236 MLALGEISARQLG--LPLWFWRNVLVAATGWMVGVSVALAGAI 276


>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 723

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 4   SRTPYKKLRSHGITNMLGWGILMIIGAILARYFKQWAPIWFYSHTLVQSLGFVLGVAGVI 63
           S+ P ++L    +   +   +L+ I A +  YF   AP+ F   TL+  L     V    
Sbjct: 313 SKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVL-----VVACP 367

Query: 64  CGLVLENKFDADVSTHKG--LGIFI 86
           C   L       V   KG  LGI I
Sbjct: 368 CAFGLATPTALTVGMGKGAELGILI 392


>pdb|2QI9|A Chain A, Abc-Transporter Btucd In Complex With Its Periplasmic
           Binding Protein Btuf
 pdb|2QI9|B Chain B, Abc-Transporter Btucd In Complex With Its Periplasmic
           Binding Protein Btuf
          Length = 326

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 26  MIIGAILARYFKQWAPIWFYSHTLVQSLGFVLGVAGVICGLV 67
           + +G I AR      P+WF+ + LV + G+ +GV+  + G +
Sbjct: 214 LALGEISARQLG--LPLWFWRNVLVAATGWXVGVSVALAGAI 253


>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 645

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 4   SRTPYKKLRSHGITNMLGWGILMIIGAILARYFKQWAPIWFYSHTLVQSLGFVLGVAGVI 63
           S+ P ++L    +   +   +L+ I A +  YF   AP+ F   TL+  L     V    
Sbjct: 235 SKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVL-----VVACP 289

Query: 64  CGLVLENKFDADVSTHKG--LGIFI 86
           C   L       V   KG  LGI I
Sbjct: 290 CAFGLATPTALTVGMGKGAELGILI 314


>pdb|1L7V|A Chain A, Bacterial Abc Transporter Involved In B12 Uptake
 pdb|1L7V|B Chain B, Bacterial Abc Transporter Involved In B12 Uptake
          Length = 326

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 26  MIIGAILARYFKQWAPIWFYSHTLVQSLGFVLGVAGVICGLV 67
           + +G I AR      P+WF+ + LV + G+ +GV+  + G +
Sbjct: 214 LALGEISARQLG--LPLWFWRNVLVAATGWXVGVSVALAGAI 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.144    0.466 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,632,517
Number of Sequences: 62578
Number of extensions: 82945
Number of successful extensions: 172
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 5
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)