Query 037186
Match_columns 93
No_of_seqs 104 out of 550
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ayf_A Nitric oxide reductase; 60.0 48 0.0016 27.3 8.3 56 9-66 350-412 (800)
2 2nr1_A NR1 M2, M2; receptor, s 46.8 17 0.00059 17.3 2.2 15 16-30 11-25 (27)
3 3s8f_C Cytochrome C oxidase po 36.7 39 0.0013 16.9 2.8 16 11-26 12-27 (34)
4 3mk7_A Cytochrome C oxidase, C 35.5 75 0.0026 24.3 5.5 24 7-30 53-76 (474)
5 3arc_M Photosystem II reaction 35.0 47 0.0016 16.8 3.1 23 17-39 8-30 (36)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 32.0 58 0.002 22.0 4.0 21 10-31 18-38 (235)
7 1kqf_C FDH-N gamma, formate de 27.2 38 0.0013 22.5 2.3 25 8-33 12-36 (217)
8 3s8f_A Cytochrome C oxidase su 23.7 2.7E+02 0.0092 21.9 7.0 32 7-38 72-106 (569)
9 4a2n_B Isoprenylcysteine carbo 19.6 1.2E+02 0.0042 20.0 3.8 51 17-68 45-95 (194)
10 1vf5_F Protein PET M; photosyn 19.6 1E+02 0.0034 15.4 2.8 17 53-69 11-27 (35)
No 1
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=59.96 E-value=48 Score=27.34 Aligned_cols=56 Identities=13% Similarity=-0.035 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH---HHHHHhcccCch----HHHHHHHHHHHHHHHHHHHHHHHH
Q 037186 9 KKLRSHGITNMLGWGILMIIGA---ILARYFKQWAPI----WFYSHTLVQSLGFVLGVAGVICGL 66 (93)
Q Consensus 9 ~~~~~Hg~lM~iaw~il~P~gi---l~aR~~k~~~~~----Wf~~H~~~q~~a~~l~~~G~~lg~ 66 (93)
+.+.+||..|.+ |....-.|. ++-|..+ .+|. .-.+...+-.++.++.++++.+|.
T Consensus 350 ~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g-~dp~~~~~L~~~~fwl~~~g~vl~~~s~~~G~ 412 (800)
T 3ayf_A 350 IAKGYHLQLAIF-WIATAWLGMGIFIAPLVGG-QEPKKQGLLVDLLFWALVVLVGGSMIGQWLGV 412 (800)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999 887665553 3445554 2244 333444555566666777777654
No 2
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=46.79 E-value=17 Score=17.28 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 037186 16 ITNMLGWGILMIIGA 30 (93)
Q Consensus 16 ~lM~iaw~il~P~gi 30 (93)
.-|.++|++++-.|+
T Consensus 11 aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 11 SAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHhhHhheeccc
Confidence 457899999998876
No 3
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=36.71 E-value=39 Score=16.86 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 037186 11 LRSHGITNMLGWGILM 26 (93)
Q Consensus 11 ~~~Hg~lM~iaw~il~ 26 (93)
.-.=|.++.++|...+
T Consensus 12 V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 12 ILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445677777777666
No 4
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=35.50 E-value=75 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=18.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH
Q 037186 7 PYKKLRSHGITNMLGWGILMIIGA 30 (93)
Q Consensus 7 ~~~~~~~Hg~lM~iaw~il~P~gi 30 (93)
..+.+.+||.+|...|..-.-.|.
T Consensus 53 Yn~~~T~H~~~mIf~~v~p~~~g~ 76 (474)
T 3mk7_A 53 FGRLRPLHTNAVIFAFGGCALFAT 76 (474)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999876665553
No 5
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=35.02 E-value=47 Score=16.80 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 037186 17 TNMLGWGILMIIGAILARYFKQW 39 (93)
Q Consensus 17 lM~iaw~il~P~gil~aR~~k~~ 39 (93)
+.+.+-.+++|...++.-|.|+.
T Consensus 8 fiAt~Lfi~iPt~FLlilYvqT~ 30 (36)
T 3arc_M 8 LIATALFVLVPSVFLIILYVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheec
Confidence 55677789999999999988763
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=32.00 E-value=58 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037186 10 KLRSHGITNMLGWGILMIIGAI 31 (93)
Q Consensus 10 ~~~~Hg~lM~iaw~il~P~gil 31 (93)
.+..| ++++++...++.+|..
T Consensus 18 ~R~~H-W~~a~~ii~l~~tG~~ 38 (235)
T 4gd3_A 18 VRIWH-WLTVLCMAVLMVTGYF 38 (235)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHH
Confidence 34445 5555555555555543
No 7
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=27.16 E-value=38 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=18.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 037186 8 YKKLRSHGITNMLGWGILMIIGAILA 33 (93)
Q Consensus 8 ~~~~~~Hg~lM~iaw~il~P~gil~a 33 (93)
...+..| +++++++.+++..|..+.
T Consensus 12 ~~~R~~H-W~~a~~ii~l~~tG~~i~ 36 (217)
T 1kqf_C 12 FIDRACH-WTVVICFFLVALSGISFF 36 (217)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3466778 788888888888887543
No 8
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ...
Probab=23.67 E-value=2.7e+02 Score=21.91 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=22.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH---HHHHHhcc
Q 037186 7 PYKKLRSHGITNMLGWGILMIIGA---ILARYFKQ 38 (93)
Q Consensus 7 ~~~~~~~Hg~lM~iaw~il~P~gi---l~aR~~k~ 38 (93)
....+.+||.+|.+-+..-+-.|. +..|..+.
T Consensus 72 Yn~i~T~Hg~iMiff~~mp~~~Gfgn~lvp~~lg~ 106 (569)
T 3s8f_A 72 YYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNM 106 (569)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456889999999988877555453 34555544
No 9
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=19.63 E-value=1.2e+02 Score=20.02 Aligned_cols=51 Identities=2% Similarity=-0.104 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037186 17 TNMLGWGILMIIGAILARYFKQWAPIWFYSHTLVQSLGFVLGVAGVICGLVL 68 (93)
Q Consensus 17 lM~iaw~il~P~gil~aR~~k~~~~~Wf~~H~~~q~~a~~l~~~G~~lg~~~ 68 (93)
++.+++..++.+..+..++-. .++.++..+..+..+|.++.++|+.+-...
T Consensus 45 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~p~~~~~~G~~l~l~G~~l~~~a 95 (194)
T 4a2n_B 45 LVFLNFIGMVFLPLTAVFSSY-LDSFNINLPDSIRLFALIVTFLNIGLFTKI 95 (194)
T ss_dssp HHHHHHHHHTHHHHHHHSCSG-GGGGCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444321 112233556677888999999888866543
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=19.60 E-value=1e+02 Score=15.41 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhc
Q 037186 53 LGFVLGVAGVICGLVLE 69 (93)
Q Consensus 53 ~a~~l~~~G~~lg~~~~ 69 (93)
+.+.++++|+.+|+..-
T Consensus 11 i~~~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 11 LSFGLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45667778888888663
Done!