Query 037186
Match_columns 93
No_of_seqs 104 out of 550
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 16:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037186.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037186hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmea1 f.24.1.1 (A:14-562) Ba 63.6 11 0.00081 27.7 6.9 32 7-38 52-86 (549)
2 d1ffta_ f.24.1.1 (A:) Cytochro 23.4 47 0.0034 23.8 4.3 23 7-29 48-70 (501)
3 d1kqfc_ f.21.1.1 (C:) Formate 9.6 1.9E+02 0.014 17.2 5.3 23 9-32 12-34 (216)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 6.5 1.4E+02 0.01 13.1 2.8 16 53-68 11-26 (32)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 6.4 1.5E+02 0.011 13.5 3.1 18 21-38 12-29 (36)
6 d1xl4a2 f.14.1.1 (A:23-138) In 5.7 1.8E+02 0.013 15.6 2.3 13 26-38 104-116 (116)
7 d1v54m_ f.23.7.1 (M:) Mitochon 5.0 2.1E+02 0.015 13.5 1.9 18 75-92 10-27 (43)
8 d1q90m_ f.23.25.1 (M:) PetM su 4.3 2.1E+02 0.015 12.6 1.9 11 58-68 16-26 (34)
9 d1k8ib2 d.19.1.1 (B:1-94) Clas 4.2 1.5E+02 0.011 16.5 1.1 18 22-39 47-64 (94)
10 d1v54a_ f.24.1.1 (A:) Mitochon 4.1 79 0.0057 22.8 -0.3 17 8-24 55-71 (514)
No 1
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=63.59 E-value=11 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=22.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH---HHHHhcc
Q 037186 7 PYKKLRSHGITNMLGWGILMIIGAI---LARYFKQ 38 (93)
Q Consensus 7 ~~~~~~~Hg~lM~iaw~il~P~gil---~aR~~k~ 38 (93)
..+.+..||..|...|...+-.|.. ..|..+.
T Consensus 52 Y~~~~T~Hg~~mif~f~~~~~~g~~~y~vp~~lg~ 86 (549)
T d1xmea1 52 YYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNM 86 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4467899999999999877666653 3354443
No 2
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=23.40 E-value=47 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=16.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 037186 7 PYKKLRSHGITNMLGWGILMIIG 29 (93)
Q Consensus 7 ~~~~~~~Hg~lM~iaw~il~P~g 29 (93)
+......||.+|.+.|.+-+=.|
T Consensus 48 Y~~~~T~HG~~Mif~~~~p~~~G 70 (501)
T d1ffta_ 48 YDQIFTAHGVIMIFFVAMPFVIG 70 (501)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 33678999999988887644444
No 3
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=9.55 E-value=1.9e+02 Score=17.16 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 037186 9 KKLRSHGITNMLGWGILMIIGAIL 32 (93)
Q Consensus 9 ~~~~~Hg~lM~iaw~il~P~gil~ 32 (93)
..+..| +++++++.+++.+|..+
T Consensus 12 ~~Rl~H-W~~a~~~i~L~~TGl~l 34 (216)
T d1kqfc_ 12 IDRACH-WTVVICFFLVALSGISF 34 (216)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456778 77888888888888754
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.49 E-value=1.4e+02 Score=13.11 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 037186 53 LGFVLGVAGVICGLVL 68 (93)
Q Consensus 53 ~a~~l~~~G~~lg~~~ 68 (93)
+++-+..+|+.+|..+
T Consensus 11 lsfglifvgwglgall 26 (32)
T d2e74f1 11 LSFGLIFVGWGLGVLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHHH
Confidence 4555666777776543
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.42 E-value=1.5e+02 Score=13.51 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 037186 21 GWGILMIIGAILARYFKQ 38 (93)
Q Consensus 21 aw~il~P~gil~aR~~k~ 38 (93)
+-.+++|...++.-|.|+
T Consensus 12 ~LFilvPt~FLliLyvqT 29 (36)
T d2axtm1 12 ALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheee
Confidence 445788999888888765
No 6
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=5.74 E-value=1.8e+02 Score=15.62 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcc
Q 037186 26 MIIGAILARYFKQ 38 (93)
Q Consensus 26 ~P~gil~aR~~k~ 38 (93)
++.|++.+|+-|+
T Consensus 104 ~~~g~i~~~fsrP 116 (116)
T d1xl4a2 104 VAASLIYARFTRP 116 (116)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCc
Confidence 6778888888764
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.01 E-value=2.1e+02 Score=13.54 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=11.0
Q ss_pred CcCchhhHHHHHHHHHHh
Q 037186 75 DVSTHKGLGIFILVLGCL 92 (93)
Q Consensus 75 ~~~~H~~lG~~v~~l~~l 92 (93)
....-+.+|+.++++.++
T Consensus 10 ls~~E~aigLt~~f~~~L 27 (43)
T d1v54m_ 10 TSPKEQAIGLSVTFLSFL 27 (43)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 334456677777776654
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.32 E-value=2.1e+02 Score=12.61 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=6.1
Q ss_pred HHHHHHHHHhh
Q 037186 58 GVAGVICGLVL 68 (93)
Q Consensus 58 ~~~G~~lg~~~ 68 (93)
++.|+.+|+++
T Consensus 16 tl~glaigfvl 26 (34)
T d1q90m_ 16 TLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34566666654
No 9
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=4.20 E-value=1.5e+02 Score=16.50 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhccc
Q 037186 22 WGILMIIGAILARYFKQW 39 (93)
Q Consensus 22 w~il~P~gil~aR~~k~~ 39 (93)
|++|.|++..++.++...
T Consensus 47 ~g~L~~~A~~is~~LN~~ 64 (94)
T d1k8ib2 47 FGVLSRLAEIISNILNEQ 64 (94)
T ss_dssp CSTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 678899999999998765
No 10
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.11 E-value=79 Score=22.82 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=13.6
Q ss_pred cchhHHHHHHHHHHHHH
Q 037186 8 YKKLRSHGITNMLGWGI 24 (93)
Q Consensus 8 ~~~~~~Hg~lM~iaw~i 24 (93)
....+.||.+|..-+..
T Consensus 55 n~~~T~Hg~iMiF~~~~ 71 (514)
T d1v54a_ 55 NVVVTAHAFVMIFFMVM 71 (514)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36889999999986644
Done!