BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037190
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 275 PLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAF 334
           P F       ++ A+ V I E  G  +  +       +    L R +   GL  ++ G F
Sbjct: 221 PRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFF 280

Query: 335 GTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYC 394
           G+        EN G++ +TR  S  V+  +A F +  S +GK  A +  IPLP++  +  
Sbjct: 281 GSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSL 339

Query: 395 VLFAYVASAGLGLLQFCNLNSFRSK 419
           +L+  + ++G+ +L    ++  +++
Sbjct: 340 LLYGVIGASGIRVLIESKVDYNKAQ 364



 Score = 32.0 bits (71), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 24  VSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLL 83
           VS  PP  + + L  QH   M G TV++P          ++  A V    L   GI TLL
Sbjct: 8   VSERPPLLQTIPLSLQHLFAMFGATVLVPVLF-------HINPATV----LLFNGIGTLL 56

Query: 84  QTSF-GTRLPVVMGGSYAF 101
                  ++P  +G S+AF
Sbjct: 57  YLFICKGKIPAYLGSSFAF 75


>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
           (Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
          Length = 157

 Score = 29.6 bits (65), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 29  PWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEK-AQVI--NTSLFVAGINTLLQT 85
           PW + +  GF+  ++ + +  I+P   V +      E  A+ +  +T + V G  TL + 
Sbjct: 21  PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPEN 80

Query: 86  SFGTRLPVVMGGSYAFNITSI 106
           S G  L  + GG YA  +  +
Sbjct: 81  SEGVILTEITGGQYAVAVARV 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,627,491
Number of Sequences: 62578
Number of extensions: 569230
Number of successful extensions: 1368
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 5
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)