Query 037190
Match_columns 526
No_of_seqs 190 out of 1880
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037190.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037190hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 21.5 2.6E+02 0.019 24.6 12.3 38 50-87 271-308 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 16.1 1.6E+02 0.012 26.1 7.9 43 49-93 46-92 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.5 4.2E+02 0.031 22.2 6.9 43 52-94 31-77 (417)
4 d1wdka1 a.100.1.3 (A:497-620) 4.1 1.4E+02 0.01 23.0 1.2 23 477-499 76-98 (124)
5 d1eu3a1 b.40.2.2 (A:2A-96) Str 3.5 1E+02 0.0074 22.9 -0.2 37 486-523 39-80 (97)
6 d1bdsa_ g.9.1.1 (A:) BDs-I def 3.4 2.3E+02 0.017 17.1 1.5 8 509-516 29-36 (43)
7 d2axta1 f.26.1.1 (A:10-344) Ph 3.3 4.6E+02 0.034 23.6 4.3 35 459-493 193-227 (335)
8 d1j72a1 d.109.1.1 (A:11-124) M 3.3 1.8E+02 0.013 22.2 1.2 11 487-497 4-14 (114)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 3.0 4.9E+02 0.036 14.6 2.8 15 217-231 12-26 (32)
10 d1dj0a_ d.265.1.1 (A:) Pseudou 3.0 84 0.0061 27.7 -1.5 39 487-526 50-88 (264)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.49 E-value=2.6e+02 Score=24.64 Aligned_cols=38 Identities=16% Similarity=-0.093 Sum_probs=27.6
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 037190 50 IIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSF 87 (526)
Q Consensus 50 ~~Plii~~a~gl~~~~~~~li~~~l~~sGi~Tllq~~~ 87 (526)
..|..+.+..+.+.++.........+...+++++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 34666666788998888777777777777777777653
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.06 E-value=1.6e+02 Score=26.15 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=30.4
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCcce
Q 037190 49 VIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTS----FGTRLPV 93 (526)
Q Consensus 49 i~~Plii~~a~gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPi 93 (526)
++.|.+ . ..|+++.|...+.+...++.+++.++-+. +|.|..+
T Consensus 46 ~~~p~~-~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~ 92 (447)
T d1pw4a_ 46 LAMPYL-V-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 92 (447)
T ss_dssp HHHHHT-T-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHH-H-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 334544 2 37999999888888888888888888775 4555443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.54 E-value=4.2e+02 Score=22.18 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=32.1
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hcCCcceE
Q 037190 52 PTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTS----FGTRLPVV 94 (526)
Q Consensus 52 Plii~~a~gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv 94 (526)
|.-+.+..|+++.|...+.+...+...++..+-+. +|.|..++
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 44456678999998888888888888888887774 57666554
No 4
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=4.10 E-value=1.4e+02 Score=22.97 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=16.9
Q ss_pred HhhhcCCCCCCcccccccccccc
Q 037190 477 LDCTHSLGHSATRQDCGRHWWGK 499 (526)
Q Consensus 477 Ln~~~~~~~~~~~~~~g~~~~~~ 499 (526)
++..+-+.+-|.|..+|++.|++
T Consensus 76 l~~mv~~g~lG~Ktg~GFY~y~~ 98 (124)
T d1wdka1 76 IDALYEAKRLGQKNGKGFYAYEA 98 (124)
T ss_dssp HHHHHHTTCCBTTTTBSSSEEC-
T ss_pred HHHHHHcCCccccCCcEeeEcCC
Confidence 34555567778999999999965
No 5
>d1eu3a1 b.40.2.2 (A:2A-96) Streptococcal superantigen Smez-2 {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.51 E-value=1e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCccccccccccccccc-----cCCCCCCCccccCCcccccCC
Q 037190 486 SATRQDCGRHWWGKFLY-----FNRDARTSDFYSLPCNLSRFF 523 (526)
Q Consensus 486 ~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~ 523 (526)
...|++|-+..-|.+.. +..++++ ++++||++.|-.+
T Consensus 39 ~~~r~~~~~yvdSevs~~~t~~F~kgDkV-dVFglp~~~~Yi~ 80 (97)
T d1eu3a1 39 LDVRDARDFFINSEMDEYAANDFKTGDKI-AVFSVPFDWNYLS 80 (97)
T ss_dssp CEEETTEEEEEEEECCHHHHTTCCTTCEE-EEEECEEEEECCS
T ss_pred hhccccceEEEehhhhhhhhhccccCCEE-EEEecccchhhcc
Confidence 34456777777555443 4555555 7899998887444
No 6
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=3.37 E-value=2.3e+02 Score=17.11 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=6.1
Q ss_pred CCccccCC
Q 037190 509 TSDFYSLP 516 (526)
Q Consensus 509 ~~~~~~~p 516 (526)
.+++|.+|
T Consensus 29 tsncykwp 36 (43)
T d1bdsa_ 29 TSNCYKWP 36 (43)
T ss_dssp CCEEEETT
T ss_pred ccccccCC
Confidence 56788888
No 7
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.32 E-value=4.6e+02 Score=23.60 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=26.9
Q ss_pred HHHHhccchhHHHHHHHHHhhhcCCCCCCcccccc
Q 037190 459 MQVIFSSPATVAIIVAYFLDCTHSLGHSATRQDCG 493 (526)
Q Consensus 459 ~~~~~~sgi~~g~i~ai~Ln~~~~~~~~~~~~~~g 493 (526)
+..++++.+..+.=-+.+++.+.|++.+....++|
T Consensus 193 Ia~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~ 227 (335)
T d2axta1 193 VAGVFGGALFCAMHGSLVTSSLIRETTETESANYG 227 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCCCcCCcccC
Confidence 55677888888888899999999976655555555
No 8
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.8e+02 Score=22.15 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=10.1
Q ss_pred Ccccccccccc
Q 037190 487 ATRQDCGRHWW 497 (526)
Q Consensus 487 ~~~~~~g~~~~ 497 (526)
|..|++|++.|
T Consensus 4 ~~g~~~Gl~VW 14 (114)
T d1j72a1 4 GSVQDPGLHVW 14 (114)
T ss_dssp STTSSSEEEEE
T ss_pred CCCCcCCeEEE
Confidence 77899999999
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.01 E-value=4.9e+02 Score=14.62 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHH
Q 037190 217 FAILFTVAIVWGYAE 231 (526)
Q Consensus 217 ~avLigivvG~~~a~ 231 (526)
.+...|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 456677777777653
No 10
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]}
Probab=2.97 E-value=84 Score=27.66 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=0.0
Q ss_pred CccccccccccccccccCCCCCCCccccCCcccccCCCCC
Q 037190 487 ATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPSS 526 (526)
Q Consensus 487 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 526 (526)
.+|.++|+|+.++.-..+.+...+. ..+-..+|+.+|..
T Consensus 50 agRTD~GVhA~~qv~~~~~~~~~~~-~~~~~~lN~~Lp~d 88 (264)
T d1dj0a_ 50 AGRTDAGVHGTGQVVHFETTALRKD-AAWTLGVNANLPGD 88 (264)
T ss_dssp SSCCCTTCEEEEEEEEEEESCCCCH-HHHHHHHHHTSCTT
T ss_pred eecccCCcceeeEEEEEeeccchhh-hhhhcccccccccc
Done!