Query 037193
Match_columns 157
No_of_seqs 130 out of 709
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 1.4E-31 3E-36 192.9 9.0 81 75-157 1-82 (85)
2 PF07983 X8: X8 domain; Inter 99.9 2.3E-27 5E-32 169.1 6.4 73 75-147 1-78 (78)
3 PF07172 GRP: Glycine rich pro 26.3 38 0.00083 25.0 1.3 17 9-25 12-28 (95)
4 TIGR01614 PME_inhib pectineste 26.2 37 0.0008 26.0 1.2 22 1-23 1-22 (178)
5 PF10880 DUF2673: Protein of u 18.0 79 0.0017 22.0 1.4 41 1-42 1-41 (65)
6 PF14984 CD24: CD24 protein 17.6 70 0.0015 21.5 1.0 15 3-17 36-50 (51)
7 PF09628 YvfG: YvfG protein; 16.4 87 0.0019 22.1 1.3 9 124-132 27-35 (68)
8 PF13511 DUF4124: Domain of un 14.5 97 0.0021 19.8 1.1 11 20-30 25-35 (60)
9 KOG3679 Predicted coiled-coil 11.9 1.3E+02 0.0029 28.6 1.6 28 120-147 529-556 (802)
10 PF11446 DUF2897: Protein of u 11.8 1.4E+02 0.0031 20.0 1.3 22 4-25 7-28 (55)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.97 E-value=1.4e-31 Score=192.90 Aligned_cols=81 Identities=28% Similarity=0.630 Sum_probs=78.4
Q ss_pred cceeeCCCCCHHHHHHHHHhhhcCCCCCccccCCCccccCCC-ChhhhHhHHHHHHHHHcCCCCCCCCCCCceEEeccCC
Q 037193 75 KYCVPKENLSEVTLKEQIEWGCMQGVDCDPVVNMKEISCADQ-SWYVKAAYVMNYYFNAHGRDEASCYFNNNAMLTYDNP 153 (157)
Q Consensus 75 lwCVak~~a~~~~Lq~~ldyACg~gvDCs~I~~gGt~gCysp-t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~ltt~DP 153 (157)
+|||+|+++++++|+++||||||+++||++|++|| .||+| ++++|||||||+|||++++..++|||+|.|++++.||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g--~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~p 78 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGG--SCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDP 78 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCC--cccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCC
Confidence 59999999999999999999999889999999999 89999 9999999999999999999999999999999999999
Q ss_pred CCCC
Q 037193 154 TTTY 157 (157)
Q Consensus 154 S~g~ 157 (157)
|+++
T Consensus 79 s~~~ 82 (85)
T smart00768 79 STGS 82 (85)
T ss_pred CCCc
Confidence 9863
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.94 E-value=2.3e-27 Score=169.09 Aligned_cols=73 Identities=29% Similarity=0.629 Sum_probs=62.1
Q ss_pred cceeeCCCCCHHHHHHHHHhhhcCC-CCCccccCCCc---cccCCC-ChhhhHhHHHHHHHHHcCCCCCCCCCCCceE
Q 037193 75 KYCVPKENLSEVTLKEQIEWGCMQG-VDCDPVVNMKE---ISCADQ-SWYVKAAYVMNYYFNAHGRDEASCYFNNNAM 147 (157)
Q Consensus 75 lwCVak~~a~~~~Lq~~ldyACg~g-vDCs~I~~gGt---~gCysp-t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~ 147 (157)
+|||+++++++++|+++|||||+++ +||++|++||+ ||.|++ +.++|||||||+||+++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999996 99999999998 778889 8999999999999999999999999999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.30 E-value=38 Score=24.97 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhccccCC
Q 037193 9 VFATFLLHLTAVSYSDV 25 (157)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (157)
+||.+||-..+|+-.|.
T Consensus 12 ~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 12 LLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHhhhhhHHh
Confidence 34444554444444433
No 4
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=26.18 E-value=37 Score=25.98 Aligned_cols=22 Identities=45% Similarity=0.606 Sum_probs=16.0
Q ss_pred CCceehhHHHHHHHHHhhhcccc
Q 037193 1 MANTISILVFATFLLHLTAVSYS 23 (157)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (157)
|++.+++++|..||+ +.+.+++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~ 22 (178)
T TIGR01614 1 MASSLSLLLFLLLLS-LVATSSS 22 (178)
T ss_pred CchhHHHHHHHHHHc-ccccccc
Confidence 778888888887776 5555655
No 5
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=18.00 E-value=79 Score=22.05 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCceehhHHHHHHHHHhhhccccCCCCccccccchhhccccC
Q 037193 1 MANTISILVFATFLLHLTAVSYSDVPSSQAATGQEVQSARVA 42 (157)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (157)
|-|.+-||++..|-.-..|-| -.+|.....|--+|+..+..
T Consensus 1 mknllkillilafa~pvfass-mq~p~pasvtttqi~amst~ 41 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASS-MQMPDPASVTTTQIQAMSTD 41 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhc-ccCCCCcceeHHHHHHhcch
Confidence 667888888888877766655 34666656666677665543
No 6
>PF14984 CD24: CD24 protein
Probab=17.56 E-value=70 Score=21.53 Aligned_cols=15 Identities=53% Similarity=0.669 Sum_probs=12.8
Q ss_pred ceehhHHHHHHHHHh
Q 037193 3 NTISILVFATFLLHL 17 (157)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (157)
-|.++||....||||
T Consensus 36 sTAsLlvvslSLLhl 50 (51)
T PF14984_consen 36 STASLLVVSLSLLHL 50 (51)
T ss_pred hhhHHHHHHHHHhcc
Confidence 367899999999998
No 7
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=16.39 E-value=87 Score=22.08 Aligned_cols=9 Identities=33% Similarity=0.670 Sum_probs=7.5
Q ss_pred HHHHHHHHH
Q 037193 124 YVMNYYFNA 132 (157)
Q Consensus 124 yAfN~YYq~ 132 (157)
-|||+||..
T Consensus 27 ~AmNaYYr~ 35 (68)
T PF09628_consen 27 HAMNAYYRS 35 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999975
No 8
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=14.52 E-value=97 Score=19.82 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=8.5
Q ss_pred ccccCCCCccc
Q 037193 20 VSYSDVPSSQA 30 (157)
Q Consensus 20 ~~~~~~~~~~~ 30 (157)
|.|+|.|....
T Consensus 25 v~ysd~P~~~~ 35 (60)
T PF13511_consen 25 VHYSDTPPPDG 35 (60)
T ss_pred EEECccCCCCC
Confidence 68999988653
No 9
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=11.88 E-value=1.3e+02 Score=28.59 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.8
Q ss_pred hhHhHHHHHHHHHcCCCCCCCCCCCceE
Q 037193 120 VKAAYVMNYYFNAHGRDEASCYFNNNAM 147 (157)
Q Consensus 120 ~haSyAfN~YYq~~~~~~~aCdF~G~A~ 147 (157)
..+-.-+-.||++++-..-+|.|+|.--
T Consensus 529 nelilrlqeyfekqgvkdfacsfsgsip 556 (802)
T KOG3679|consen 529 NELILRLQEYFEKQGVKDFACSFSGSIP 556 (802)
T ss_pred HHHHHHHHHHHHHcCcceeeeeccCCcc
Confidence 3455567789999999999999999753
No 10
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=11.76 E-value=1.4e+02 Score=20.03 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=18.0
Q ss_pred eehhHHHHHHHHHhhhccccCC
Q 037193 4 TISILVFATFLLHLTAVSYSDV 25 (157)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (157)
.|.++||+..+-.|.++-|+--
T Consensus 7 lIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc
Confidence 4778899999999999988743
Done!