BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037194
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A V+ LL + D+ D NG T AA++G ++I ++LK
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 153 LLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDR--KVIFITSVDTG 204
+ + + + PLY AA +G + L K ++ +D+ K F S+D G
Sbjct: 94 -VNAKDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDIG 145
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 124 DENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLF 181
D G T AAAVG ++I ++L+ + + + PL+ AA G + L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD-TNGTTPLHLAASLGHLEIVEVLL 88
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 54 CSE--RLLLYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQL 111
CSE R L +AA ++ ++ L + +++ EG T LH+A VQ L
Sbjct: 40 CSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPKDAEG-STCLHLAAKKGHYEVVQYL 96
Query: 112 LTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALF 171
L+ D+ QD+ G T +A VD+ L+L K S + IR ++ L++AA
Sbjct: 97 LSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFS 154
Query: 172 GQTDTASFLF 181
G D A L
Sbjct: 155 GCVDIAEILL 164
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L +AA G ++ L E + + A+ ++G +T LH A V+ L++ D
Sbjct: 8 LIEAAENGNKDRVKDLIENG--ADVNASDSDG-RTPLHYAAKEGHKEIVKLLISK--GAD 62
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASF 179
+ +D +G T +AA G +I L++ K + + S PL++AA G +
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 180 LFHK 183
L K
Sbjct: 122 LISK 125
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 94 TVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSL 153
T LH+A V+ LL + D+ D G T AA G ++I ++LK N +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGAD 105
Query: 154 LGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDR--KVIFITSVDTG 204
+ + PL+ AA+FG + L K+ ++ +D+ K F S+D G
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTAS 178
D+ +D +G T AA G ++I ++LK + + M PL AALFG +
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVE 97
Query: 179 FLF 181
L
Sbjct: 98 VLL 100
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L AAL G ++ +E L + + + A EGH T LH+A V+ LL + D
Sbjct: 84 LRLAALFGHLEIVEVLLKN--GADVNANDMEGH-TPLHLAAMFGHLEIVEVLLK--NGAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLT-FMDPE 118
L +AA G ++ L E + A+ ++G +T LH A V+ LL+ DP
Sbjct: 8 LIEAAENGNKDRVKDLLENG--ADPNASDSDG-RTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKK--NPSLLGIRGSKNMPPLYFAALFGQTDT 176
+D +G T +AA G +I L+L K +P+ + S PL++AA G +
Sbjct: 65 ---AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---AKDSDGRTPLHYAAENGHKEI 118
Query: 177 ASFLFHK 183
L K
Sbjct: 119 VKLLLSK 125
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTAS 178
D+ D GNT AA ++I ++LK + + PL+ AALFG +
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 179 FLFHKSEKELPTEDR--KVIFITSVDTG 204
L K ++ +D+ K F S+D G
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIDNG 124
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 84 ICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIA 143
I A ++ QT L +A + V+ LL D+ +QD++G+TA A G +IA
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIA 232
Query: 144 NLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHK 183
L+L + + L A GQ++ AS L+ +
Sbjct: 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 94 TVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSL 153
T LH+A V+ LL D+ D G+T AA +G ++I ++LK +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH--GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 154 LGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDR--KVIFITSVDTG 204
+ + PL+ AA+ G + L K ++ +D+ K F S+D G
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNG 157
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AAL G ++ +E L + + + + A T G T LH+A V+ LL D
Sbjct: 84 LHLAALIGHLEIVEVLLK--HGADVNAVDTWG-DTPLHLAAIMGHLEIVEVLLKH--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 94 TVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSL 153
T LH+A V+ LL D+ D G+T AA +G ++I ++LK +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH--GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 154 LGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDR--KVIFITSVDTG 204
+ + PL+ AA+ G + L K ++ +D+ K F S+D G
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNG 157
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AAL G ++ +E L + + + + A T G T LH+A V+ LL D
Sbjct: 84 LHLAALIGHLEIVEVLLK--HGADVNAVDTWG-DTPLHLAAIMGHLEIVEVLLKH--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 67 GEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDEN 126
G ++ ++ L+++ + + +G T LH+A G K Q L+ + + ++D+
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKF 139
Query: 127 GNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEK 186
AA+VG++ + L+ S + + + PL+ A G D A L K
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Query: 187 ELPTEDRK 194
E D K
Sbjct: 200 EYDLVDNK 207
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 67 GEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDEN 126
G ++ ++ L+++ + + +G T LH+A G K Q L+ + + ++D+
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKF 139
Query: 127 GNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEK 186
AA+VG++ + L+ S + + + PL+ A G D A L K
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Query: 187 ELPTEDRK 194
E D K
Sbjct: 200 EYDLVDNK 207
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 67 GEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDEN 126
G ++ ++ L+++ + + +G T LH+A G K Q L+ + + ++D+
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKF 139
Query: 127 GNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEK 186
AA+VG++ + L+ S + + + PL+ A G D A L K
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Query: 187 ELPTEDRK 194
E D K
Sbjct: 200 EYDLVDNK 207
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 46 SGKKRKLCCSERLLLYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQT 105
S R+ + LL KA ++ ++ L E + EG T LH A +
Sbjct: 15 SSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSRE 72
Query: 106 SFVQQLLTF-MDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPP 164
V+ LL DP +L+ +NG T F AA G+V + L L K + N
Sbjct: 73 DIVELLLRHGADP---VLRKKNGATPFILAAIAGSVKLLKLFLSKGADV-------NECD 122
Query: 165 LYF------AALFGQTDTASFLFHK 183
Y AA++G+ FL+ +
Sbjct: 123 FYGFTAFMEAAVYGKVKALKFLYKR 147
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 90 EGHQTVLHVATGAKQTSFVQQLLTF-MDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLK 148
EG T LH A + V+ LL DP +L+ +NG T F AA G+V + L L
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 149 KNPSLLGIRGSKNMPPLYF------AALFGQTDTASFLFHKS 184
K + N Y AA++G+ FL+ +
Sbjct: 94 KGADV-------NECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A V+ LL D+ D+ G+T AA G ++I ++L KN +
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKH--GADVNAADKMGDTPLHLAALYGHLEIVEVLL-KNGA 104
Query: 153 LLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDR--KVIFITSVDTG 204
+ + PL+ AA G + L K ++ +D+ K F S+D G
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNG 157
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AAL G ++ +E L + + + A T G T LH+A A V+ LL + D
Sbjct: 84 LHLAALYGHLEIVEVLLKN--GADVNATDTYGF-TPLHLAADAGHLEIVEVLLKY--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNM--PPLYFAALFGQTDT 176
D+ +D++G T AA G ++I ++LK + + M PL+ AAL+G +
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD---VNAADKMGDTPLHLAALYGHLEI 95
Query: 177 ASFLF 181
L
Sbjct: 96 VEVLL 100
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 124 DENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKN--MPPLYFAALFGQTDTASFLF 181
DE+G T AA +G ++I ++LK + N + PL+ AA+ G + L
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 182 HKSEKELPTEDR--KVIFITSVDTG 204
K ++ +D+ K F S+D G
Sbjct: 101 -KHGADVNAQDKFGKTAFDISIDNG 124
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 57 RLLLYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMD 116
R L+ AA G ++ ++ L E + + A G +T LH+A V+ LL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNG-RTPLHLAARNGHLEVVKLLLEA-- 57
Query: 117 PEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDT 176
D+ +D+NG T AA G +++ L+L+ + + PL+ AA G +
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV 116
Query: 177 ASFLF 181
L
Sbjct: 117 VKLLL 121
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 57 RLLLYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMD 116
R L+ AA G ++ ++ L E + + A G +T LH+A V+ LL
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNG-RTPLHLAARNGHLEVVKLLLEA-- 90
Query: 117 PEDLMLQDENGNTAFCFAAAVGAVDIANLMLK 148
D+ +D+NG T AA G +++ L+L+
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 99 ATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRG 158
A A Q V+ L+ + D+ D+NG T AAA G ++I ++L KN + +
Sbjct: 13 AAAAGQDDEVRILMA--NGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASD 69
Query: 159 SKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDR 193
S + PL+ AA G + L K ++ DR
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDR 103
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA +G ++ +E L + Y + + A +G+ T LH+A V+ LL + D
Sbjct: 84 LHLAAYRGHLEIVEVLLK--YGADVNAMDYQGY-TPLHLAAEDGHLEIVEVLLKY--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTAS 178
D+ D G+T AA +G ++I ++L KN + + G+ PL+ AA +
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 179 FLFHKSEKELPTEDR--KVIFITSVDTG 204
L K ++ +D+ K F S+D G
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIDNG 124
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA+ G ++ +E L + + + A G +T LH+A A V+ LL D
Sbjct: 51 LHLAAMLGHLEIVEVLLKN--GADVNATGNTG-RTPLHLAAWADHLEIVEVLLKH--GAD 105
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLK 148
+ QD+ G TAF + G D+A ++ K
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTAS 178
D+ +DE G T A A G ++I ++LK + + + PL+ AA G + A
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD-AIGFTPLHLAAFIGHLEIAE 97
Query: 179 FLFHKSEKELPTEDR--KVIFITSVDTG 204
L K ++ +D+ K F S+ G
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIGNG 124
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A V+ LL D+ +D+NG T AA G +++ L+L+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 153 LLGIRGSKNMPPLYFAALFGQTDTASFLF 181
+ + PL+ AA G + L
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 57 RLLLYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMD 116
R L+ AA G ++ ++ L E + + A G +T LH+A V+ LL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNG-RTPLHLAARNGHLEVVKLLLEA-- 57
Query: 117 PEDLMLQDENGNTAFCFAAAVGAVDIANLMLK 148
D+ +D+NG T AA G +++ L+L+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA +G ++ +E L + + + + A+ + G +T LH+A V+ LL + D
Sbjct: 51 LHLAAKRGHLEIVEVLLK--HGADVNASDSWG-RTPLHLAATVGHLEIVEVLLEY--GAD 105
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 61 YKAALKGEMKEIEGLFEKDYRSIICAAITEG-------HQTVLHVATGAKQTSFVQQLLT 113
+KA + G + + + R ++C + G ++ LH A + T V+ LL
Sbjct: 25 FKADVHGHSASYYAIADNNVR-LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL- 82
Query: 114 FMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSL--LGIRGSKNMPPLYFAALF 171
F +D D+ GNTA +A G L +KKN L G G K Y A
Sbjct: 83 FSGLDDSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWK--TSFYHAVXL 139
Query: 172 GQTDTASFLFHKSEKELPT 190
S+ E+P+
Sbjct: 140 NDVSIVSYFL----SEIPS 154
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA +G ++ +E L + Y + + A T G T LH+A V+ LL + D
Sbjct: 84 LHLAAKRGHLEIVEVLLK--YGADVNADDTIG-STPLHLAADTGHLEIVEVLLKY--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLM 146
+ QD+ G TAF + G D+A ++
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSL--LGIRGSKNMPPLYFAALFGQTDT 176
D+ +D G+T AA VG ++I ++LK + L GS PL+ AA G +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS---TPLHLAAKRGHLEI 95
Query: 177 ASFLF 181
L
Sbjct: 96 VEVLL 100
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 119 DLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTAS 178
D+ D+ G+T AA +G +I ++LK + R + PL+ AA G +
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVE 97
Query: 179 FLF 181
L
Sbjct: 98 VLL 100
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA G ++ +E L + Y + + A G T LH+A V+ LL D
Sbjct: 84 LHLAADNGHLEIVEVLLK--YGADVNAQDAYG-LTPLHLAADRGHLEIVEVLLKH--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA +G ++ +E L + + + + A+ G +T LH+A V+ LL + D
Sbjct: 51 LHLAAKRGHLEIVEVLLK--HGADVNASDIWG-RTPLHLAATVGHLEIVEVLLEY--GAD 105
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 107 FVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLY 166
V+ L+T D+ D +G TA +AAAV + N++L + + + K+ PL+
Sbjct: 133 MVEDLITA--DADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLF 189
Query: 167 FAALFGQTDTASFLF 181
AA G + + L
Sbjct: 190 LAAREGSYEASKALL 204
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA +G ++ +E L + + + + A G +T LH+A V+ LL + D
Sbjct: 51 LHLAAKRGHLEIVEVLLK--HGADVNARDIWG-RTPLHLAATVGHLEIVEVLLEY--GAD 105
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 25 FVESEKSSLTRVLKQPSLHLLSGKKRKLCCSERLLLYKAALKGEMKEIEGLFEKDYRSII 84
F ES + TR + +L+ K R+ C R L++ A KGE+ + + ++ ++
Sbjct: 164 FPESYTTEATRRMND----ILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVV 219
Query: 85 CAAITEGHQT 94
C + +T
Sbjct: 220 CICLGNPPET 229
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 25 FVESEKSSLTRVLKQPSLHLLSGKKRKLCCSERLLLYKAALKGEMKEIEGLFEKDYRSII 84
F ES + TR + +L+ K R+ C R L++ A KGE+ + + ++ ++
Sbjct: 164 FPESYTTEATRRMND----ILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVV 219
Query: 85 CAAITEGHQT 94
C + +T
Sbjct: 220 CICLGNPPET 229
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 82 SIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVD 141
S I A + ++T A + QLL + D+ DENG TA F A +G+
Sbjct: 35 SYIAADVVSEYETPWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDK 91
Query: 142 IANLMLKKNPSL--LGIRGSKNMPPLYFAALF 171
L+ + L +RG + L+ AA +
Sbjct: 92 CVRLLAEAGADLDHRDMRG--GLTALHMAAGY 121
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 135 AAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLF 181
AA G +D L+K +L+ + PL +A+ FG+ +T FL
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 135 AAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLF 181
AA G +D L+K +L+ + PL +A+ FG+ +T FL
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 82 SIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVD 141
S I A + ++T A + QLL + D+ DENG TA F A +G+
Sbjct: 34 SYIAADVVSEYETPWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDK 90
Query: 142 IANLMLKKNPSL 153
L+ + L
Sbjct: 91 CVRLLAEAGADL 102
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A ++ ++LL D +QD G T A + A + ++L+ +
Sbjct: 23 ETALHLAARYSRSDAAKRLLEA--SADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 153 LLGIRGSKNMPPLYFAA 169
L R PL AA
Sbjct: 81 DLDARMHDGTTPLILAA 97
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA G ++ +E L + + + + A +GH T LH+A V+ LL D
Sbjct: 84 LHLAAATGHLEIVEVLLK--HGADVNAYDNDGH-TPLHLAAKYGHLEIVEVLLKH--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLM 146
+ QD+ G TAF + G D+A ++
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA G ++ +E L K+ + + +T T LH+A V+ LL D
Sbjct: 51 LHLAASNGHLEIVEVLL-KNGADVNASDLTG--ITPLHLAAATGHLEIVEVLLKH--GAD 105
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLK 148
+ D +G+T AA G ++I ++LK
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 88 ITEGHQTVLHVATGAKQTSFVQQLLTF-MDPEDLMLQDENGNTAFCFAAAVG 138
+TE T LH+A + F+ LL F E L LQ++ G TA AA +G
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 88 ITEGHQTVLHVATGAKQTSFVQQLLTF-MDPEDLMLQDENGNTAFCFAAAVG 138
+TE T LH+A + F+ LL F E L LQ++ G TA AA +G
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA +G ++ +E L + + + A+ + G T LH+A V+ LL + D
Sbjct: 84 LHLAARRGHLEIVEVLLKNG--ADVNASDSHGF-TPLHLAAKRGHLEIVEVLLK--NGAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L +AA G +++ L ++ C A T LH+A G + VQ LL D
Sbjct: 28 LLEAARSGNEEKLMALLTP--LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GAD 83
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASF 179
+ +D+ G A + G ++ L+LK + + PL+ AA + + S
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 180 LF 181
L
Sbjct: 143 LL 144
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA G ++ +E L + + + + A EG T LH+A V+ LL + D
Sbjct: 84 LHLAADNGHLEIVEVLLK--HGADVNAKDYEGF-TPLHLAAYDGHLEIVEVLLKY--GAD 138
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
+ QD+ G TAF + G D+A ++ K N
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 94 TVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLK 148
T LH+A V+ LL + D+ D NG T AA +G ++I ++LK
Sbjct: 82 TPLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|1IIU|A Chain A, Chicken Plasma Retinol-binding Protein (rbp)
Length = 174
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 175 DTASFLFHKSEKELPTEDRKVIFITSVDTGLYGKYQDI 212
D+ SF+F + K LP E +K++ +D L KY+ I
Sbjct: 130 DSYSFVFSRDPKGLPPEAQKIVRQRQIDLCLDRKYRVI 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 60 LYKAALKGEMKEIEGLFEKDYRSIICAAITEGHQTVLHVATGAKQTSFVQQLLTFMDPED 119
L+ AA G ++ +E L + + + A T G T LH+A V+ LL + D
Sbjct: 51 LHLAAYWGHLEIVEVLLKN--GADVNAYDTLG-STPLHLAAHFGHLEIVEVLLK--NGAD 105
Query: 120 LMLQDENGNTAFCFAAAVGAVDIANLMLK 148
+ +D+NG T AA G ++I ++LK
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 94 TVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKN 150
T LH+A V+ LL + D+ QD+ G TAF + G D+A ++ K N
Sbjct: 115 TPLHLAANRGHLEIVEVLLKY--GADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 94 TVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSL 153
T LH+A ++ ++LL D +QD G T A + A + ++++ +
Sbjct: 59 TALHLAAAYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 154 LGIRGSKNMPPLYFAA 169
L R PL AA
Sbjct: 117 LDARMHDGTTPLILAA 132
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A ++ ++LL D +QD G T A + A + ++++ +
Sbjct: 58 ETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 153 LLGIRGSKNMPPLYFAA 169
L R PL AA
Sbjct: 116 DLDARMHDGTTPLILAA 132
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A ++ ++LL D +QD G T A + A + ++++ +
Sbjct: 59 ETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 153 LLGIRGSKNMPPLYFAA 169
L R PL AA
Sbjct: 117 DLDARMHDGTTPLILAA 133
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 93 QTVLHVATGAKQTSFVQQLLTFMDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPS 152
+T LH+A ++ ++LL D +QD G T A + A + ++++ +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 153 LLGIRGSKNMPPLYFAA 169
L R PL AA
Sbjct: 84 DLDARMHDGTTPLILAA 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,757,232
Number of Sequences: 62578
Number of extensions: 212498
Number of successful extensions: 584
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 94
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)