BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037195
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 146/528 (27%), Positives = 218/528 (41%), Gaps = 111/528 (21%)
Query: 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSN-LQQLRLLDLRYNN 59
+ L N+SS+ F+G IP + L YL L+ N F+G IP S L LDL N+
Sbjct: 249 LKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 60 FVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
F G +P F + + L L L N G +P + M + V L +
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELP------------MDTLLKMRGLKVLDLSFN 353
Query: 120 ELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLL-----NLPPHMREFSISRNNLTGEIPS 174
E S ++ +L +L L L SN G +L N ++E + N TG+IP
Sbjct: 354 EFSGELPESLTNLS-ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 175 SFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRM--NKFSGSLPQTFA 232
+ N S + S N LSG I LG+ ++ +D+++ N G +PQ
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGS---------LSKLRDLKLWLNMLEGEIPQELM 463
Query: 233 KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRS 292
L +L L+ N L G +P L NC +L I + NN++ P W+ L L +L L +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 293 NRFRG--PIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLH------------------- 331
N F G P + R L +DL+ N F G +P
Sbjct: 524 NSFSGNIPAELGDCR----SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 332 -----------GNDIQMERI-------LTTFATIDLSSNRFQGE---------------- 357
GN ++ + I L+T +++S + G
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 358 --------ILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
I + +G + L LN+ HN+++G IP + +L L LDLSSNKL GRIP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 410 LASLNYLSV------RPGGP-----QFNTFGNDSYSGNSGLCGFPLSK 446
+++L L+ GP QF TF + N GLCG+PL +
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 130/480 (27%), Positives = 203/480 (42%), Gaps = 83/480 (17%)
Query: 6 LSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPS--SFSNLQQLRLLDLRYN--NFV 61
LS+S+ GS+ + L LDLS NS SG + + S + L+ L++ N +F
Sbjct: 84 LSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 62 GKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLEL 121
GK+ L L L L N + G+ +V W+ G L +L +
Sbjct: 142 GKVSGGLK-LNSLEVLDLSANSISGA---------------NVVGWVLSDGCGELKHLAI 185
Query: 122 SRNFLT-NIDHLPWKNLEYLHLDSNLLQGSL--LNLPPHMREFSISRNNLTGEIPSSFCN 178
S N ++ ++D NLE+L + SN + L ++ IS N L+G+ +
Sbjct: 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 179 LSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC-VL 237
+ ++ + S+N G I L L + + NKF+G +P + +C L
Sbjct: 246 CTELKLLNISSNQFVGPI---------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 238 VSLNLNGNRLEGPLPP-------------------------SLVNCRHLEVIDVGNNQIN 272
L+L+GN G +PP +L+ R L+V+D+ N+ +
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 273 DTFPHWLDVL-PELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLP----- 326
P L L L L L SN F GPI + P L+ + L N FTG +P
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 327 ----------IWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN 376
YL G L+ + L N +GEI + L + +L++L + N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 377 NLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGN 436
+LTG IPS L N T L + LS+N+L G IP + L L++ N+S+SGN
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-------KLSNNSFSGN 529
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 124/458 (27%), Positives = 189/458 (41%), Gaps = 97/458 (21%)
Query: 11 FMGSIPASLGNDITQLAYLDLSFNSFSG----------------HIPSS---------FS 45
F G + L + L LDLS NS SG H+ S S
Sbjct: 140 FPGKVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 46 NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVA 105
L LD+ NNF IP + + L +L + GN+L G + + AIS
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG----------DFSRAISTC 246
Query: 106 AWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNL----PPHMREF 161
+ + + S F+ I LP K+L+YL L N G + + +
Sbjct: 247 TELKLLNIS-------SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 162 SISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQ--DMR 219
+S N+ G +P F + S + S+N+ SG++ +DTL L M + D+
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-------PMDTL-LKMRGLKVLDLS 351
Query: 220 MNKFSGSLPQTFAK-SCVLVSLNLNGNRLEGP--------------------------LP 252
N+FSG LP++ S L++L+L+ N GP +P
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 253 PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312
P+L NC L + + N ++ T P L L +L+ L L N G I V L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLE 469
Query: 313 IIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLN 372
+ L +N TG +P + T I LS+NR GEI + +G+L +L L
Sbjct: 470 TLILDFNDLTGEIPSGLSN---------CTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 373 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQL 410
+S+N+ +G IP+ L + L LDL++N G IP +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 145/528 (27%), Positives = 217/528 (41%), Gaps = 111/528 (21%)
Query: 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSN-LQQLRLLDLRYNN 59
+ L N+SS+ F+G IP + L YL L+ N F+G IP S L LDL N+
Sbjct: 246 LKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 60 FVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
F G +P F + + L L L N G +P + M + V L +
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELP------------MDTLLKMRGLKVLDLSFN 350
Query: 120 ELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLL-----NLPPHMREFSISRNNLTGEIPS 174
E S ++ +L +L L L SN G +L N ++E + N TG+IP
Sbjct: 351 EFSGELPESLTNLS-ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 175 SFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRM--NKFSGSLPQTFA 232
+ N S + S N LSG I LG+ ++ +D+++ N G +PQ
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGS---------LSKLRDLKLWLNMLEGEIPQELM 460
Query: 233 KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRS 292
L +L L+ N L G +P L NC +L I + NN++ P W+ L L +L L +
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 293 NRFRG--PIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLH------------------- 331
N F G P + R L +DL+ N F G +P
Sbjct: 521 NSFSGNIPAELGDCR----SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 332 -----------GNDIQMERI-------LTTFATIDLSSNRFQGE---------------- 357
GN ++ + I L+T +++S + G
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 358 --------ILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
I + +G + L LN+ HN+++G IP + +L L LDLSSNKL GRIP
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 410 LASLNYLSV-----------RPGGPQFNTFGNDSYSGNSGLCGFPLSK 446
+++L L+ P QF TF + N GLCG+PL +
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 130/480 (27%), Positives = 203/480 (42%), Gaps = 83/480 (17%)
Query: 6 LSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPS--SFSNLQQLRLLDLRYN--NFV 61
LS+S+ GS+ + L LDLS NS SG + + S + L+ L++ N +F
Sbjct: 81 LSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 62 GKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLEL 121
GK+ L L L L N + G+ +V W+ G L +L +
Sbjct: 139 GKVSGGLK-LNSLEVLDLSANSISGA---------------NVVGWVLSDGCGELKHLAI 182
Query: 122 SRNFLT-NIDHLPWKNLEYLHLDSNLLQGSL--LNLPPHMREFSISRNNLTGEIPSSFCN 178
S N ++ ++D NLE+L + SN + L ++ IS N L+G+ +
Sbjct: 183 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 242
Query: 179 LSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC-VL 237
+ ++ + S+N G I L L + + NKF+G +P + +C L
Sbjct: 243 CTELKLLNISSNQFVGPI---------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 238 VSLNLNGNRLEGPLPP-------------------------SLVNCRHLEVIDVGNNQIN 272
L+L+GN G +PP +L+ R L+V+D+ N+ +
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 273 DTFPHWLDVL-PELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLP----- 326
P L L L L L SN F GPI + P L+ + L N FTG +P
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 327 ----------IWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN 376
YL G L+ + L N +GEI + L + +L++L + N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 377 NLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGN 436
+LTG IPS L N T L + LS+N+L G IP + L L++ N+S+SGN
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-------KLSNNSFSGN 526
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 124/458 (27%), Positives = 189/458 (41%), Gaps = 97/458 (21%)
Query: 11 FMGSIPASLGNDITQLAYLDLSFNSFSG----------------HIPSS---------FS 45
F G + L + L LDLS NS SG H+ S S
Sbjct: 137 FPGKVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 46 NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVA 105
L LD+ NNF IP + + L +L + GN+L G + + AIS
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG----------DFSRAISTC 243
Query: 106 AWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNL----PPHMREF 161
+ + + S F+ I LP K+L+YL L N G + + +
Sbjct: 244 TELKLLNIS-------SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 162 SISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQ--DMR 219
+S N+ G +P F + S + S+N+ SG++ +DTL L M + D+
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-------PMDTL-LKMRGLKVLDLS 348
Query: 220 MNKFSGSLPQTFAK-SCVLVSLNLNGNRLEGP--------------------------LP 252
N+FSG LP++ S L++L+L+ N GP +P
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 253 PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312
P+L NC L + + N ++ T P L L +L+ L L N G I V L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLE 466
Query: 313 IIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLN 372
+ L +N TG +P + T I LS+NR GEI + +G+L +L L
Sbjct: 467 TLILDFNDLTGEIPSGLSN---------CTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 373 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQL 410
+S+N+ +G IP+ L + L LDL++N G IP +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 117/260 (45%), Gaps = 54/260 (20%)
Query: 40 IPSSFSNLQQLRLLDLR-YNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNL 98
IPSS +NL L L + NN VG IP LT+L YL + + G+IP + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ---- 123
Query: 99 TFAISVAAWMWDIGVHTLIYLELSRNFLT-----NIDHLPWKNLEYLHLDSNLLQGSLLN 153
+ TL+ L+ S N L+ +I LP NL + D N + G+
Sbjct: 124 --------------IKTLVTLDFSYNALSGTLPPSISSLP--NLVGITFDGNRISGA--- 164
Query: 154 LPPHMREFS-------ISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSG------------ 194
+P FS ISRN LTG+IP +F NL+ + F D S N L G
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 195 QILQCLGNS-TLDTLDLGMN---NFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGP 250
Q + NS D +G++ N D+R N+ G+LPQ + L SLN++ N L G
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 251 LPPSLVNCRHLEVIDVGNNQ 270
+P N + +V NN+
Sbjct: 284 IPQG-GNLQRFDVSAYANNK 302
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 31/240 (12%)
Query: 220 MNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279
+N G +P AK L L + + G +P L + L +D N ++ T P +
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 280 DVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRI-IDLSYNRFTGVLPIWYLHGNDIQME 338
LP L +T NR G I D+ F KL + +S NR TG +P + + N
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGS--FSKLFTSMTISRNRLTGKIPPTFANLN----- 198
Query: 339 RILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT---GGIPSSLRNLTELESL 395
A +DLS N +G+ + G + + ++++ N+L G + S L L
Sbjct: 199 -----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGL 249
Query: 396 DLSSNKLAGRIP---TQLASLNYLSVR--------PGGPQFNTFGNDSYSGNSGLCGFPL 444
DL +N++ G +P TQL L+ L+V P G F +Y+ N LCG PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 11 FMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTN 70
+G IP ++ +TQL YL ++ + SG IP S ++ L LD YN G +P ++
Sbjct: 89 LVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 71 LTRLSYLGLGGNQLIGSIPSSI--FELLNLTFAISVAAWMWDI----GVHTLIYLELSRN 124
L L + GN++ G+IP S F L + IS I L +++LSRN
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 125 FLTNIDHLPW---KNLEYLHLDSNLLQGSL--LNLPPHMREFSISRNNLTGEIPSSFCNL 179
L + + KN + +HL N L L + L ++ + N + G +P L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 180 SYIRFFDSSNNSLSGQILQ 198
++ + S N+L G+I Q
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ 286
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 278 WLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQM 337
WL VL + T R N + P P + +L Y F + I L G
Sbjct: 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 338 ERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 397
LT + ++ G I + L ++ +L +L+ S+N L+G +P S+ +L L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 398 SSNKLAGRIPTQLASLNYL 416
N+++G IP S + L
Sbjct: 157 DGNRISGAIPDSYGSFSKL 175
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTN 70
+ S+P + + +T+L YL L +N F L L+ L L YNN + ++P+ F
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDK 179
Query: 71 LTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
LT L L L NQL +P F+ L + + WD + +IY+
Sbjct: 180 LTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYM 227
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ ++PA + ++ L L ++ N F L L L L N P +F +L
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELL 96
T+L+YL LG N+L S+P +F+ L
Sbjct: 133 TKLTYLSLGYNEL-QSLPKGVFDKL 156
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 31/194 (15%)
Query: 8 SSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDI 67
SS + +IP+++ D +L DL N S +F L +LRLL L N I
Sbjct: 24 SSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80
Query: 68 FTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLT 127
F L L L + N+L ++P +F+ L L L L RN L
Sbjct: 81 FKELKNLETLWVTDNKL-QALPIGVFDQL-----------------VNLAELRLDRNQLK 122
Query: 128 NI-----DHLPWKNLEYLHLDSNLLQG---SLLNLPPHMREFSISRNNLTGEIPSSFCNL 179
++ D L L YL L N LQ + + ++E + N L +F L
Sbjct: 123 SLPPRVFDSLT--KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 180 SYIRFFDSSNNSLS 193
+ ++ NN L
Sbjct: 181 TELKTLKLDNNQLK 194
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
LT + L N Q V KL SLK L + +N L + LTEL++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 401 KLAGRIP 407
+L R+P
Sbjct: 192 QLK-RVP 197
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 89/245 (36%), Gaps = 71/245 (28%)
Query: 51 RLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIF-ELLNLTFAISVAAWMW 109
+ LDL+ N F LT+L L L N+L ++P+ IF EL NL W+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLE-----TLWVT 93
Query: 110 DIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLT 169
D + L + D L NL L LD N L+ +LPP
Sbjct: 94 DNKLQALP--------IGVFDQLV--NLAELRLDRNQLK----SLPP------------- 126
Query: 170 GEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQ 229
R FDS + L L LG N Q SLP+
Sbjct: 127 -------------RVFDSL--------------TKLTYLSLGYNELQ---------SLPK 150
Query: 230 -TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVL 288
F K L L L N+L+ + L+ + + NNQ+ D L +L++L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 289 TLRSN 293
L+ N
Sbjct: 211 QLQEN 215
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P + TQ+ YL N + P F L QL LDL N +F L
Sbjct: 21 LASVPTGIPT-TTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
T+L+ L L NQL SIP F+ L I + WD ++YL I
Sbjct: 78 TQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRW------ISQ 130
Query: 132 LPWKNLEYLHLDSNLLQGSLLNLP 155
PW YL+LD + + S N P
Sbjct: 131 HPWLVFGYLNLDHDSARCSGTNTP 154
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P + + +TQL L LS N F L +L +L L N +F L
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
T+L L L NQL S+P IF+ L I + WD + YL
Sbjct: 100 TQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 9 SYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-I 67
S + S+P + + T+L +L N F L QL L L N + +PD +
Sbjct: 16 SKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV 71
Query: 68 FTNLTRLSYLGLGGNQLIGSIPSSIFELL 96
F LT+L+ L L N+L S+P+ +F+ L
Sbjct: 72 FDKLTKLTILYLHENKL-QSLPNGVFDKL 99
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P + + +T L YL+L+ N F L L LDL YN +F L
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
T+L L L NQL S+P +F+ L I + WD + YL
Sbjct: 181 TQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 227
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTNLTRLSYLGLG 80
++T L YL L+ N F L L+ L L N + +PD +F LT L+YL L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-VENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 81 GNQLIGSIPSSIFE-LLNLT 99
NQL S+P +F+ L NLT
Sbjct: 142 HNQL-QSLPKGVFDKLTNLT 160
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
LT + L N+ Q V KL +L LN++HN L LT L LDLS N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 401 KL 402
+L
Sbjct: 168 QL 169
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
LT ++L+ N+ Q V KL +L L++S+N L LT+L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 401 KLAGRIP----TQLASLNYL 416
+L +P +L SL Y+
Sbjct: 192 QLKS-VPDGVFDRLTSLQYI 210
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTN 70
+ S+P + + +T L YL L N F L L LDL NN + +P+ +F
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDK 179
Query: 71 LTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
LT+L L L NQL S+P +F+ L I + WD ++YL
Sbjct: 180 LTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYL 227
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 22 DITQLAYLDLSFN---SFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTNLTRLSYL 77
++T L YL L+ N S + +NL++L L++ N + +PD +F LT L+YL
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYL 138
Query: 78 GLGGNQLIGSIPSSIFE-LLNLT 99
L NQL S+P +F+ L NLT
Sbjct: 139 YLYHNQL-QSLPKGVFDKLTNLT 160
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+PA + T L L N + P F +L QL L+L N +F L
Sbjct: 31 LASVPAGIP---TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLE 120
T+L++L L NQL SIP +F+ L I + WD ++YL+
Sbjct: 88 TKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLK 135
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 2 TLRNLSSSYF----MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRY 57
+L NL Y +G++P + + +TQL LDL N + + F L L+ L +
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 58 NNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLI 117
N ++P LT L++L L NQL SIP F+ L+ + WD ++
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Query: 118 YLELSRNFLTN 128
YL RN++ +
Sbjct: 180 YL---RNWVAD 187
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVG 62
L LS + F G +T+L +L+L +N F +L +L L L N
Sbjct: 47 LATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 63 KIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFE--------LLNLTFAISVAAWMWDIGVH 114
+F +LT+L L LGGNQL S+PS +F+ LN S+ A +D +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLT 155
Query: 115 TLIYLELSRNFLTNIDHLPWKNLEYLH 141
L L LS N L ++ H + L L
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P+ + D +L DL + ++F L +L L+L YN +F +L
Sbjct: 26 LDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELL 96
T L LGL NQL S+P +F+ L
Sbjct: 83 TELGTLGLANNQL-ASLPLGVFDHL 106
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 203 STLDTLDLGMNNFQDMRMNKFSGSLPQ-TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 261
+ LD L LG N + SLP F + L L LN N+L+ + +L
Sbjct: 107 TQLDKLYLGGNQLK---------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 262 EVIDVGNNQINDTFPH-WLDVLPELQVLTLRSNRF 295
+ + + NQ+ + PH D L +LQ +TL N+F
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVG 62
L LS + F G +T+L +L+L +N F +L +L L L N
Sbjct: 47 LATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 63 KIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFE--------LLNLTFAISVAAWMWDIGVH 114
+F +LT+L L LGGNQL S+PS +F+ LN S+ A +D +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLT 155
Query: 115 TLIYLELSRNFLTNIDHLPWKNLEYLH 141
L L LS N L ++ H + L L
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P+ + D +L DL + ++F L +L L+L YN +F +L
Sbjct: 26 LDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELL 96
T L LGL NQL S+P +F+ L
Sbjct: 83 TELGTLGLANNQL-ASLPLGVFDHL 106
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 203 STLDTLDLGMNNFQDMRMNKFSGSLPQ-TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 261
+ LD L LG N + SLP F + L L LN N+L+ + +L
Sbjct: 107 TQLDKLYLGGNQLK---------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 262 EVIDVGNNQINDTFPH-WLDVLPELQVLTLRSNRF 295
+ + + NQ+ + PH D L +LQ +TL N+F
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTN 70
+ S+P + N +T L YL+LS N F L QL+ L L N +PD +F
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDK 122
Query: 71 LTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
LT+L L L NQL S+P +F+ L I + WD + YL
Sbjct: 123 LTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 170
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 25 QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQL 84
Q YLDL NS F L L L L N +F LT L+YL L NQL
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 85 IGSIPSSIFELL 96
S+P+ +F+ L
Sbjct: 89 -QSLPNGVFDKL 99
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 329 YLHGNDIQ-----MERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIP 383
YL GN +Q + LT+ ++LS+N+ Q V KL LK L ++ N L
Sbjct: 58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117
Query: 384 SSLRNLTELESLDLSSNKLAGRIP----TQLASLNYL 416
LT+L+ L L N+L +P +L SL Y+
Sbjct: 118 GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYI 153
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 25/105 (23%)
Query: 49 QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWM 108
Q LDL N+ +F LT L+ L LGGN+L S+P+ +F L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLT----------- 76
Query: 109 WDIGVHTLIYLELSRNFLTNI-----DHLPWKNLEYLHLDSNLLQ 148
+L YL LS N L ++ D L L+ L L++N LQ
Sbjct: 77 ------SLTYLNLSTNQLQSLPNGVFDKL--TQLKELALNTNQLQ 113
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
LT+ + L N+ Q V KL SL LN+S N L LT+L+ L L++N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 401 KL 402
+L
Sbjct: 111 QL 112
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 50/302 (16%)
Query: 111 IGVHTLIYLELSRNFLTNIDHLPWKN---LEYLHLDSN-----LLQGSLLNLPPHMREFS 162
+G+ TL L LS N N+ + N L +L + N L G L NL ++RE
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELD 356
Query: 163 ISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNK 222
+S +++ S CNL Q S L +L+L N ++
Sbjct: 357 LSHDDIE---TSDCCNL------------------QLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 223 FSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPS-LVNCRHLEVIDVGNNQINDTFPHWLDV 281
F PQ L L+L RL+ S N L+V+++ ++ ++ + D
Sbjct: 396 FK-ECPQ-------LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 282 LPELQVLTLRSNRF-RGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERI 340
LP LQ L L+ N F +G I T + +L I+ LS+ + + D
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI---------DQHAFTS 498
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
L +DLS NR +E L L + LN++ N+++ +PS L L++ +++L N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 401 KL 402
L
Sbjct: 558 PL 559
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 163/414 (39%), Gaps = 42/414 (10%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ IP +L N L+ SFN ++FS L L LDL D F +
Sbjct: 24 LNEIPGTLPNST---ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80
Query: 72 TRLSYLGLGGNQLIG------SIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF 125
RL L L N LI S P ++ L + IS ++ TL L L N
Sbjct: 81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140
Query: 126 LTNID---HLPWKNLEYLHLDSNLLQ------GSLLNLPPHMREFSISRNNLTGEIPSSF 176
+++I P + L+ L +N + S L ++ +++ N++ G P +F
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAF 199
Query: 177 CNLSYIRF-FDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235
+ + F + N L I + L NST+ +L LG F+DM S P F C
Sbjct: 200 DSAVFQSLNFGGTQNLLV--IFKGLKNSTIQSLWLG--TFEDMDDEDIS---PAVFEGLC 252
Query: 236 VLV--SLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
+ S+NL + + L+ +D+ +++ P L L L+ L L +N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSAN 311
Query: 294 RFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNR 353
+F + + FP L + + N L L L +DLS +
Sbjct: 312 KFENLCQISASN--FPSLTHLSIKGNTKRLELGTGCLEN--------LENLRELDLSHDD 361
Query: 354 FQGEILE--VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR 405
+ L L+ L+SLN+S+N + + +LE LDL+ +L +
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 14 SIPASLGNDITQLAYLDLSFNSFS-GHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLT 72
S+ + QL LDL+F S F NL L++L+L ++ +F L
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 73 RLSYLGLGGNQL-IGSIPSS-------IFELLNLTFA-ISVAAWMWDIGVHTLIYLELSR 123
L +L L GN G+I + E+L L+F +S + + +++LS
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 124 NFLT--NIDHLPWKNLEYLHLDSN---LLQGSLLNLPPHMREFSISRNNLTGEIPSSFCN 178
N LT +I+ L YL+L SN ++ SLL + R ++ +N L C
Sbjct: 510 NRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD-------CT 562
Query: 179 LSYIRFFD 186
S I F +
Sbjct: 563 CSNIYFLE 570
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 11/160 (6%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P + TQ+ YL N + P F L QL LDL N +F L
Sbjct: 29 LASVPTGIPT-TTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
T+L+ L L NQL SIP F+ L I + WD ++YL I
Sbjct: 86 TQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW------ISQ 138
Query: 132 LPWKNLEYLHLDSNLLQGSLLNLPPH-MREFSISRNNLTG 170
P YL+LD + + S N P + E S S + G
Sbjct: 139 HPGLVFGYLNLDPDSARCSGTNTPVRAVTEASTSPSKCPG 178
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ S+P + TQ+ YL N + P F L QL LDL N +F L
Sbjct: 21 LASVPTGIPT-TTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
T+L+ L L NQL SIP F+ L I + WD ++Y LSR I
Sbjct: 78 TQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWDCACSDILY--LSR----WISQ 130
Query: 132 LPWKNLEYLHLDSNLLQGSLLNLPPH-MREFSISRNNLTG 170
P YL+LD + + S N P + E S S + G
Sbjct: 131 HPGLVFGYLNLDPDSARCSGTNTPVRAVTEASTSPSKCPG 170
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 308 FPKLRIIDLSYNRFTGV----------LPIWYLHGNDIQMERILTTFA-------TIDLS 350
FP+L+++DLS + L L GN IQ L F+ + L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVALE 111
Query: 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
+N E + G L +LK LN++HN + +P NLT LE LDLSSNK+ T
Sbjct: 112 TNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Query: 410 LASLNYL 416
L L+ +
Sbjct: 171 LRVLHQM 177
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 362 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+ T L L+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 26 LAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGK-IPDIFTNLTRLSYLGLGGNQL 84
L YLD+S F+ L L +L + N+F +PDIFT L L++L L QL
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 85 IGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHL 142
P++ L +L L +S N ++D P+K L L +
Sbjct: 483 EQLSPTAFNSL------------------SSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 282 LPELQVLTLRSN--RFRGPIDDTKTRVPFPKLRIIDLSYN-------RFTGVLPIWYL-- 330
LP L+ L L N F+G +++ L+ +DLS+N F G+ + +L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 331 -HGNDIQMERI-----LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN----NLTG 380
H N QM L +D+S + + L+SL+ L ++ N N
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 381 GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418
I + LRNLT LDLS +L PT SL+ L V
Sbjct: 464 DIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQV 498
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 279 LDVLPELQVLTLRSNRFRGPIDDTKTRVPF-------PKLRIIDLSYNRFT-GVLPIWYL 330
L + E V N I T TRV F L ++ ++ N F LP
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---- 463
Query: 331 HGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT 390
DI E TF +DLS + + L+SL+ LN+SHNN + L
Sbjct: 464 ---DIFTELRNLTF--LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 391 ELESLDLSSNKLA-------GRIPTQLASLN 414
L+ LD S N + P+ LA LN
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81
++ L +LDLS P++F++L L++L++ +NNF + L L L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
Query: 82 NQLIGS-------IPSSIFELLNLT---FAI-----SVAAWMWD 110
N ++ S PSS+ LNLT FA S W+ D
Sbjct: 528 NHIMTSKKQELQHFPSSL-AFLNLTQNDFACTCEHQSFLQWIKD 570
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 362 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+ T L L+ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 26 LAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGK-IPDIFTNLTRLSYLGLGGNQL 84
L YLD+S F+ L L +L + N+F +PDIFT L L++L L QL
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 85 IGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHL 142
P++ L +L L +S N ++D P+K L L +
Sbjct: 507 EQLSPTAFNSL------------------SSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 282 LPELQVLTLRSN--RFRGPIDDTKTRVPFPKLRIIDLSYN-------RFTGVLPIWYL-- 330
LP L+ L L N F+G +++ L+ +DLS+N F G+ + +L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCC--SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427
Query: 331 -HGNDIQMERI-----LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN----NLTG 380
H N QM L +D+S + + L+SL+ L ++ N N
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 381 GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418
I + LRNLT LDLS +L PT SL+ L V
Sbjct: 488 DIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQV 522
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 88/231 (38%), Gaps = 35/231 (15%)
Query: 201 GNSTLDTLDLGMNNFQDMRMN--KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 258
G + +DL F D+ N F G Q+ + L L+L+ N + + + +
Sbjct: 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGL 419
Query: 259 RHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPF-------PKL 311
LE +D ++ + + E V N I T TRV F L
Sbjct: 420 EQLEHLDFQHSNLKQ--------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 312 RIIDLSYNRFT-GVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKS 370
++ ++ N F LP DI E TF +DLS + + L+SL+
Sbjct: 472 EVLKMAGNSFQENFLP-------DIFTELRNLTF--LDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 371 LNISHNNLTGGIPSSLRNLTELESLDLSSNKLA-------GRIPTQLASLN 414
LN+SHNN + L L+ LD S N + P+ LA LN
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81
++ L +LDLS P++F++L L++L++ +NNF + L L L
Sbjct: 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551
Query: 82 NQLIGS-------IPSSIFELLNLT 99
N ++ S PSS+ LNLT
Sbjct: 552 NHIMTSKKQELQHFPSSL-AFLNLT 575
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 23 ITQLAYLDLSFNSFSGHIPSS-FSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81
+T L L+LS N F G I S F NL +L +LDL YN+ F L L L L
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
NQL S+P IF+ L I + WD + YL
Sbjct: 381 NQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 8 SSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD- 66
S F+GSI + + ++ +L LDLS+N SF L L+ L L N + +PD
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDG 389
Query: 67 IFTNLTRLSYLGLGGNQLIGSIP 89
IF LT L + L N S P
Sbjct: 390 IFDRLTSLQKIWLHTNPWDCSCP 412
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 136/349 (38%), Gaps = 72/349 (20%)
Query: 28 YLDLSFNSFSGHIPSSFSNLQQLR-------------------------LLDLRYNNFVG 62
Y+DLS NS + +SFS LQ L+ +L L YN F+
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 63 KIPDIFTNLTRLSYLGLGGNQLIGSI-------PSSIFELL----NLTFAISVAAWMWDI 111
F L L L L L G++ P + E+L N I A++ +
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF--L 151
Query: 112 GVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREF---------- 161
+ L+L+ N + +I N + H LL+ S + L M E+
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHF--TLLRLSSITL-QDMNEYWLGWEKCGNP 208
Query: 162 ----SISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQ--CLGNSTLDTLDLGMNNF 215
SI+ +L+G + F RFFD +++G +Q L NS G NF
Sbjct: 209 FKNTSITTLDLSG---NGFKESMAKRFFD----AIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 216 QDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTF 275
+D F G L + K+C +L+ +++ L + LE + + N+IN
Sbjct: 262 KDPDNFTFKG-LEASGVKTC-----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 276 PHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGV 324
+ L L L L N F G I D++ KL ++DLSYN +
Sbjct: 316 DNAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNHIRAL 362
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 176/429 (41%), Gaps = 45/429 (10%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ IP +L N +L+ SFN +FS L L LDL D F +
Sbjct: 21 LSEIPDTLPNTT---EFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSH 77
Query: 72 TRLSYLGLGGNQLIGSI------PSSIFELLNLTFAISVAAWMWDIGVHTLIYLE---LS 122
+LS L L GN LI P S+ L + IS + I VH L LE L
Sbjct: 78 HQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEF---IPVHNLENLESLYLG 134
Query: 123 RNFLTNID---HLPWKNLEYLHLDSNLL----QGSLLNLPPHMR-EFSISRNNLTGEIPS 174
N +++I P +NL+ L +N + + + +L + + + NN+ G
Sbjct: 135 SNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELG 194
Query: 175 SFCNLSY--IRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFA 232
+F + + + F + N S+ I L NST +L LG F+D+ S ++ +
Sbjct: 195 AFDSTIFQSLNFGGTPNLSV---IFNGLQNSTTQSLWLG--TFEDIDDEDISSAMLKGLC 249
Query: 233 KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRS 292
+ V SLNL +R + L+ +D+ + P + L L+ L L
Sbjct: 250 EMSV-ESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSV 307
Query: 293 NRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSN 352
N F + FP L + + N + LH +E+ L T+DLS N
Sbjct: 308 NHFDQLCQISAAN--FPSLTHLYIRGN-------VKKLHLGVGCLEK-LGNLQTLDLSHN 357
Query: 353 RFQGEILEVL--GKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP-TQ 409
+ L L+ L++LN+SHN G + + +LE LDL+ +L P +
Sbjct: 358 DIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSP 417
Query: 410 LASLNYLSV 418
+L++L V
Sbjct: 418 FQNLHFLQV 426
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 362 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+ T L L+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 21 NDITQLAYLDLSFNSFSGH-IPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGL 79
N ++ L L ++ NSF + +P F+ L+ L LDL P F +L+ L L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 80 GGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
NQL S+P IF+ L I + WD + YL
Sbjct: 502 ASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 121/321 (37%), Gaps = 86/321 (26%)
Query: 48 QQLRLLDLRYNNFVGKIPDI-FTNLTRLSYLGLGGNQLIGSIPSSIFELLNLT---FAIS 103
Q L L++ ++ G+ P + +L RL++ G + E L+L+ +
Sbjct: 307 QHLELVNCKF----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 104 VAAWMWDIGVHTLIYLELSRNFLTNI--DHLPWKNLEYLHLD-SNLLQGSLLNLPPHMRE 160
D G +L YL+LS N + + + L + LE+L SNL Q M E
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ---------MSE 413
Query: 161 FSIS---RNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQD 217
FS+ RN + +I + +++ F+ G S+L+ L + N+FQ
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFN--------------GLSSLEVLKMAGNSFQ- 458
Query: 218 MRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPH 277
E LP R+L +D+ Q+ P
Sbjct: 459 ------------------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 278 WLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGN--DI 335
+ L LQVL + SN+ + VP D ++R T + IW LH N D
Sbjct: 489 AFNSLSSLQVLNMASNQLKS--------VP-------DGIFDRLTSLQKIW-LHTNPWDC 532
Query: 336 QMERILTTFATIDLSSNRFQG 356
RI ++ +S + QG
Sbjct: 533 SCPRIDYLSRWLNKNSQKEQG 553
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 282 LPELQVLTLRSN--RFRGPIDDTKTRVPFPKLRIIDLSYN-------RFTGVLPIWYL-- 330
LP L+ L L N F+G +++ L+ +DLS+N F G+ + +L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 331 -HGNDIQMERI-----LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN----NLTG 380
H N QM L +D+S + + L+SL+ L ++ N N
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 381 GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418
I + LRNLT LDLS +L PT SL+ L V
Sbjct: 464 DIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQV 498
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 24 TQLAYLDLSFN-------SFSG-----HIPSSFSNLQQLR------------LLDLRYNN 59
T L YLDLSFN +F G H+ SNL+Q+ LD+ + +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 60 FVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIF-ELLNLTF 100
IF L+ L L + GN + IF EL NLTF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 308 FPKLRIIDLSYNRFTGV----------LPIWYLHGNDIQMERILTTFA-------TIDLS 350
FP+L+++DLS + L L GN IQ L F+ + +
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109
Query: 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
+N E + G L +LK LN++HN + +P NLT LE LDLSSNK+ T
Sbjct: 110 TNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 410 LASLNYL 416
L L+ +
Sbjct: 169 LRVLHQM 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 308 FPKLRIIDLSYNRFTGV----------LPIWYLHGNDIQMERILTTFA-------TIDLS 350
FP+L+++DLS + L L GN IQ L F+ + +
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 110
Query: 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
+N E + G L +LK LN++HN + +P NLT LE LDLSSNK+ T
Sbjct: 111 TNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
Query: 410 LASLNYL 416
L L+ +
Sbjct: 170 LRVLHQM 176
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 308 FPKLRIIDLSYNRFTGV----------LPIWYLHGNDIQMERILTTFA-------TIDLS 350
FP+L+++DLS + L L GN IQ L F+ + +
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 110
Query: 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
+N E + G L +LK LN++HN + +P NLT LE LDLSSNK+ T
Sbjct: 111 TNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
Query: 410 LASLNYL 416
L L+ +
Sbjct: 170 LRVLHQM 176
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ IP +L IT++ L N+ P +FS ++LR +DL N PD F L
Sbjct: 23 LTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 72 TRLSYLGLGGNQLIGSIPSSIFE 94
L+ L L GN+ I +P S+FE
Sbjct: 80 RSLNSLVLYGNK-ITELPKSLFE 101
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 308 FPKLRIIDLSYNRFTGV----------LPIWYLHGNDIQMERILTTFA-------TIDLS 350
FP+L+++DLS + L L GN IQ L F+ + +
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 111
Query: 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKLAGRIPTQ 409
+N E + G L +LK LN++HN + +P NLT LE LDLSSNK+ T
Sbjct: 112 TNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Query: 410 LASLNYL 416
L L+ +
Sbjct: 171 LRVLHQM 177
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 150/397 (37%), Gaps = 103/397 (25%)
Query: 24 TQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQ 83
T L LDLS+N+ SFS L LR L L YNN P F L+ L YL L
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 84 LIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPW---KNLEYL 140
S+ + H NID + K LEYL
Sbjct: 308 TKQSV---------------------SLASH------------PNIDDFSFQWLKYLEYL 334
Query: 141 HLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCL 200
++D N N+P S N TG + + +LS + F +S +L+ + L
Sbjct: 335 NMDDN-------NIP------STKSNTFTGLVSLKYLSLS--KTF-TSLQTLTNETFVSL 378
Query: 201 GNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCR 259
+S L TL+L N+ + FS L Q L L+L N +E L R
Sbjct: 379 AHSPLLTLNLTKNHISKIANGTFSW-LGQ-------LRILDLGLNEIEQKLSGQEWRGLR 430
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
++ I + N+ ++P LQ L LR RV L+ +D+S +
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR-------------RVA---LKNVDISPS 474
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
F R L +DLS+N ++L L +L+ L+ HNNL
Sbjct: 475 PF-----------------RPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Query: 380 --------GGIPSSLRNLTELESLDLSSNKLAGRIPT 408
GG + L+ L+ L L+L SN L IP
Sbjct: 518 RLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPV 553
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 147/395 (37%), Gaps = 74/395 (18%)
Query: 24 TQLAYLDLSFNSFSGHIPSSFSNLQ--QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81
T + L L+ N S+FS L+ L LDL YNN F+ L L YL L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLT---------NIDHL 132
N + P S + G+ L YL L R F NID
Sbjct: 282 NNIQRLSPRSFY------------------GLSNLRYLSLKRAFTKQSVSLASHPNIDDF 323
Query: 133 PW---KNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSN 189
+ K LEYL++D N N+P S N TG + + +LS + F +S
Sbjct: 324 SFQWLKYLEYLNMDDN-------NIP------STKSNTFTGLVSLKYLSLS--KTF-TSL 367
Query: 190 NSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEG 249
+L+ + L +S L TL+L N+ + FS L Q L L+L N +E
Sbjct: 368 QTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW-LGQ-------LRILDLGLNEIEQ 419
Query: 250 PLP-PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPF 308
L R++ I + N+ ++P LQ L LR + P
Sbjct: 420 KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPL 479
Query: 309 PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQ--------GEILE 360
L I+DLS N + N+ +E L +D N G +
Sbjct: 480 RNLTILDLSNNNIANI--------NEDLLEG-LENLEILDFQHNNLARLWKRANPGGPVN 530
Query: 361 VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 395
L L+ L LN+ N L +NL EL+S+
Sbjct: 531 FLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSI 565
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 240 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPI 299
LNL N+L P + L ++D G N I+ P +LP L+VL L+ N
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 300 DDT 302
D T
Sbjct: 90 DQT 92
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 120/316 (37%), Gaps = 71/316 (22%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ IP L ++IT L+L+ N P++F+ QL +LD +N+ P++ L
Sbjct: 16 LTHIPDDLPSNIT---VLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL 72
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
L L L N+L I F + L L+L N + I
Sbjct: 73 PLLKVLNLQHNEL-SQISDQTF-----------------VFCTNLTELDLMSNSIHKIKS 114
Query: 132 LPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNN- 190
P+KN Q +L+ L +S N L+ + L ++ + N
Sbjct: 115 NPFKN-----------QKNLIKL-------DLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 191 --SLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
+L + L+ LGNS+L LDL N ++ FS QT K L +L LN +L
Sbjct: 157 ILALRSEELEFLGNSSLRKLDLSSNPLKE-----FSPGCFQTIGK---LFALLLNNAQLN 208
Query: 249 GPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPF 308
L L C L + N L+L +N+ + T + + +
Sbjct: 209 PHLTEKL--CWELSNTSIQN-------------------LSLANNQLLATSESTFSGLKW 247
Query: 309 PKLRIIDLSYNRFTGV 324
L +DLSYN V
Sbjct: 248 TNLTQLDLSYNNLHDV 263
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ IP +L IT++ L N+ P +FS ++LR +DL N PD F L
Sbjct: 23 LTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 72 TRLSYLGLGGNQLIGSIPSSIFE 94
L+ L L GN+ I +P S+FE
Sbjct: 80 RSLNSLVLYGNK-ITELPKSLFE 101
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 89/241 (36%), Gaps = 64/241 (26%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKI-PDIFTN 70
+ +P L D A LDL N + F NL+ L L L NN + KI P F
Sbjct: 43 LEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAP 98
Query: 71 LTRLSYLGLGGNQLI---GSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFL- 126
L +L L L NQL +P ++ EL I+ G++ +I +EL N L
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 127 ----------------------TNIDHLPW---KNLEYLHLDSNLL-------------- 147
TNI +P +L LHLD N +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 148 --------------QGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLS 193
GSL N PH+RE ++ N L ++P + YI+ NN++S
Sbjct: 219 AKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 194 G 194
Sbjct: 277 A 277
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 221 NKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLD 280
NK S P FA L L L+ N+L+ LP + + L+ + V N+I +
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 281 VLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERI 340
L ++ V+ L +N L+ + F G+ + Y+ D + I
Sbjct: 143 GLNQMIVVELGTN----------------PLKSSGIENGAFQGMKKLSYIRIADTNITTI 186
Query: 341 LT----TFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396
+ + L N+ L LN+L L +S N+++ SL N L L
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 397 LSSNKLAGRIPTQLASLNYLSV 418
L++NKL ++P LA Y+ V
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQV 267
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 89/241 (36%), Gaps = 64/241 (26%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKI-PDIFTN 70
+ +P L D A LDL N + F NL+ L L L NN + KI P F
Sbjct: 43 LEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAP 98
Query: 71 LTRLSYLGLGGNQLI---GSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFL- 126
L +L L L NQL +P ++ EL I+ G++ +I +EL N L
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 127 ----------------------TNIDHLPW---KNLEYLHLDSNLL-------------- 147
TNI +P +L LHLD N +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 148 --------------QGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLS 193
GSL N PH+RE ++ N L ++P + YI+ NN++S
Sbjct: 219 AKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 194 G 194
Sbjct: 277 A 277
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 221 NKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLD 280
NK S P FA L L L+ N+L+ LP + + L+ + V N+I +
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 281 VLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERI 340
L ++ V+ L +N L+ + F G+ + Y+ D + I
Sbjct: 143 GLNQMIVVELGTN----------------PLKSSGIENGAFQGMKKLSYIRIADTNITTI 186
Query: 341 LT----TFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396
+ + L N+ L LN+L L +S N+++ SL N L L
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 397 LSSNKLAGRIPTQLASLNYLSV 418
L++NKL ++P LA Y+ V
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQV 267
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 21 NDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTNLTRLSYLGL 79
+++TQL L LS+N P +F L+ LRLL L + N + +P+ F +L+ LS+L +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL-HGNDISVVPEGAFNDLSALSHLAI 133
Query: 80 GGNQL 84
G N L
Sbjct: 134 GANPL 138
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 15 IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRL 74
+P + D+T+L YLD N F+ +P SN + L L+DL N F+N+T+L
Sbjct: 25 LPKGIPRDVTEL-YLD--GNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 75 SYLGLGGNQLIGSIPSSIFE 94
L L N+L IP F+
Sbjct: 81 LTLILSYNRL-RCIPPRTFD 99
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 221 NKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLD 280
NK LP+ + + L L+GN+ +P L N +HL +ID+ NN+I+
Sbjct: 19 NKGLKVLPKGIPRD--VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 281 VLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGV--LPIWYLHGNDIQM 337
+ +L L L NR R +P P+ F G+ L + LHGNDI +
Sbjct: 76 NMTQLLTLILSYNRLRC--------IP-PR---------TFDGLKSLRLLSLHGNDISV 116
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 117
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ LN S N +T
Sbjct: 118 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVT 164
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 165 DLKP--LANLTTLERLDISSNKVS 186
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 102
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 103 -LANLTNLT 110
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 14 SIPASLGNDITQLAYLDL-SFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLT 72
SIP+ N I L LDL S +F L LR L+L N +IP++ T L
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPNL-TPLI 207
Query: 73 RLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDI------GVHTLIYLELSRNFL 126
+L L L GN L P S L++L + + + I + +L+ + L+ N L
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 127 TNIDH---LPWKNLEYLHLDSN 145
T + H P +LE +HL N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 151/371 (40%), Gaps = 82/371 (22%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
M +PA+L + Q+ L+L+ +F+ ++ L + +N P +F N+
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
L+ L L N L S+P IF L L +S N L I+
Sbjct: 117 PLLTVLVLERNDL-SSLPRGIFH-----------------NTPKLTTLSMSNNNLERIED 158
Query: 132 LPWK---NLEYLHLDSNLLQGSLLNLPPHMREFSISRNNL-TGEIPSSFCNLSYIRFFDS 187
++ +L+ L L SN L L+L P + ++S N L T IP + + D+
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA------VEELDA 212
Query: 188 SNNSLSGQILQCLGNSTLDTLDLGMNNFQDMR-MNKFSGSLPQTFAKSCVLVSLNLNGNR 246
S+NS++ +++ N L L L NN D + + G LV ++L+ N
Sbjct: 213 SHNSIN--VVRGPVNVELTILKLQHNNLTDTAWLLNYPG-----------LVEVDLSYNE 259
Query: 247 LEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRV 306
LE + V + LE + + NN++ + N + PI
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRL------------------VALNLYGQPI------- 294
Query: 307 PFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLN 366
P L+++DLS+N + ++ N Q +R+ + L N + L +
Sbjct: 295 --PTLKVLDLSHNH------LLHVERNQPQFDRLENLY----LDHNSI---VTLKLSTHH 339
Query: 367 SLKSLNISHNN 377
+LK+L +SHN+
Sbjct: 340 TLKNLTLSHND 350
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 54/149 (36%), Gaps = 41/149 (27%)
Query: 293 NRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSN 352
N RGP++ +L I+ L +N T W L+ +DLS N
Sbjct: 218 NVVRGPVN--------VELTILKLQHNNLTDT--AWLLN---------YPGLVEVDLSYN 258
Query: 353 RFQGEILEVLGKLNSLKSLNISHNNLTG----GIPSSLRNLTELESLDLSSNKLAGRIPT 408
+ + K+ L+ L IS+N L G P + L+ LDLS N L
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHL------ 307
Query: 409 QLASLNYLSVRPGGPQFNTFGNDSYSGNS 437
L V PQF+ N NS
Sbjct: 308 -------LHVERNQPQFDRLENLYLDHNS 329
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L ++L N+ TG+ P + + IQ E L ++S+ F G L+
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQ-ELQLGENKIKEISNKMFLG--------LHQ 103
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
LK+LN+ N ++ +P S +L L SL+L+SN
Sbjct: 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVG 62
L +SS G +P L L+L N +G P++F ++ L L N
Sbjct: 41 LGRISSDGLFGRLP--------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 63 KIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELS 122
+F L +L L L NQ+ +P S FE LN ++++A+ ++ H + E
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151
Query: 123 R 123
R
Sbjct: 152 R 152
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 156 PHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNF 215
PH+ + + RN LTG P++F S+I+ N + + + LG++
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK---------EISNKMFLGLHQL 104
Query: 216 QDMRM--NKFSGSLPQTFAKSCVLVSLNLNGN 245
+ + + N+ S +P +F L SLNL N
Sbjct: 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 151/377 (40%), Gaps = 94/377 (24%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
M +PA+L + Q+ L+L+ +F+ ++ L + +N P +F N+
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
L+ L L N L S+P IF L L +S N L I+
Sbjct: 123 PLLTVLVLERNDL-SSLPRGIFH-----------------NTPKLTTLSMSNNNLERIED 164
Query: 132 LPWK---NLEYLHLDSNLLQGSLLNLPPHMREFSISRNNL-TGEIPSSFCNLSYIRFFDS 187
++ +L+ L L SN L L+L P + ++S N L T IP + + D+
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA------VEELDA 218
Query: 188 SNNSLSGQILQCLGNSTLDTLDLGMNNFQDMR-MNKFSGSLPQTFAKSCVLVSLNLNGNR 246
S+NS++ +++ N L L L NN D + + G LV ++L+ N
Sbjct: 219 SHNSIN--VVRGPVNVELTILKLQHNNLTDTAWLLNYPG-----------LVEVDLSYNE 265
Query: 247 LEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRV 306
LE + V + LE + + NN+ L L L
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNR--------------LVALNLYGQ------------- 298
Query: 307 PFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTF------ATIDLSSNRFQGEILE 360
P P L+++DLS+N + ++ N Q +R+ + T+ LS++
Sbjct: 299 PIPTLKVLDLSHNH------LLHVERNQPQFDRLENLYLDHNSIVTLKLSTH-------- 344
Query: 361 VLGKLNSLKSLNISHNN 377
++LK+L +SHN+
Sbjct: 345 -----HTLKNLTLSHND 356
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 117
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ L+ S N +T
Sbjct: 118 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVT 164
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 165 DLKP--LANLTTLERLDISSNKVS 186
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 102
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 103 -LANLTNLT 110
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 117
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ L+ S N +T
Sbjct: 118 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVT 164
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 165 DLKP--LANLTTLERLDISSNKVS 186
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 102
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 103 -LANLTNLT 110
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 261 LEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRF-RGPIDDTKTRVPFPKLRIIDLSYN 319
LEV+ + NN I + + + +LQ L L N+ R P++ K PKL ++DLS N
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173
Query: 320 RFTGV-------LPIW-----YLHGN----DIQMERILTTFATIDLSS 351
+ + LP W YLH N D ++ ++ + + LSS
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSS 221
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82
+ L YLDLS N FS+LQ L +L L N+ V + F ++ +L L L N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 83 QL 84
Q+
Sbjct: 147 QI 148
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 235 CVLVSLNLNGNRLEGP-LPPSLVNCRHLEVIDVGNNQINDTFPHWLDV-LPELQVLTLRS 292
C+ S L+ ++ + P +P SL + + ++D+ +N ++ W L L L L
Sbjct: 16 CLCASNILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH 73
Query: 293 NRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTF--ATIDLS 350
N ++ VP P LR +DLS N + + +D+Q +L + + +
Sbjct: 74 NHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLF---SDLQALEVLLLYNNHIVVVD 128
Query: 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSL----RNLTELESLDLSSNKLAGRI 406
N F+ + L+ L +S N ++ P L L +L LDLSSNKL
Sbjct: 129 RNAFED--------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Query: 407 PTQLASL 413
T L L
Sbjct: 180 LTDLQKL 186
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 31/150 (20%)
Query: 24 TQLAYLDLSFN-------SFSG-----HIPSSFSNLQQLR------------LLDLRYNN 59
T L YLDLSFN +F G H+ SNL+Q+ LD+ + +
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 60 FVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIF-ELLNLTFAISVAAWMWDI------G 112
IF L+ L L + GN + IF EL NLTF + +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 113 VHTLIYLELSRNFLTNIDHLPWKNLEYLHL 142
+ +L L +S N ++D P+K L L +
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 264 IDVGNNQINDTFPHWL-DVLPELQVLTLRSN--RFRGPIDDTKTRVPFPKLRIIDLSYN- 319
+++ +N++ + PH + D L +L L+L SN F+G +++ L+ +DLS+N
Sbjct: 33 LELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDFGTTSLKYLDLSFNG 89
Query: 320 ------RFTGVLPIWYL---HGNDIQMERI-----LTTFATIDLSSNRFQGEILEVLGKL 365
F G+ + +L H N QM L +D+S + + L
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 366 NSLKSLNISHN----NLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418
+SL+ L ++ N N I + LRNLT LDLS +L PT SL+ L V
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQV 203
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81
++ L +LDLS P++F++L L++L++ +NNF + L L L
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 82 NQLIGS-------IPSSIFELLNLT---FAISVA-----AWMWD 110
N ++ S PSS+ LNLT FA + W+ D
Sbjct: 233 NHIMTSKKQELQHFPSSL-AFLNLTQNDFACTCEHQSFLQWIKD 275
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Query: 275 FPHW-LDVLPELQVLTLRSNRFRGPIDDTKTRVPF-------PKLRIIDLSYNRFT-GVL 325
F H L + E V N I T TRV F L ++ ++ N F L
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 326 PIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSS 385
P DI E TF +DLS + + L+SL+ LN+SHNN
Sbjct: 168 P-------DIFTELRNLTF--LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 386 LRNLTELESLDLSSNKLA-------GRIPTQLASLN 414
+ L L+ LD S N + P+ LA LN
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 12 MGSIPASLGNDITQLAYLDLSFN--SFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFT 69
+ S+P + + +TQL L LS N SF G S L+ LDL +N + + F
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98
Query: 70 NLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLT-- 127
L +L +L + L S+F + + LIYL++S
Sbjct: 99 GLEQLEHLDFQHSNLKQMSEFSVF-----------------LSLRNLIYLDISHTHTRVA 141
Query: 128 -NIDHLPWKNLEYLHLDSNLLQGSLL-NLPPHMREFS---ISRNNLTGEIPSSFCNLSYI 182
N +LE L + N Q + L ++ +R + +S+ L P++F +LS +
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 183 RFFDSSNN---SLSGQILQCLGNSTLDTLDLGMNN 214
+ + S+N SL +CL +L LD +N+
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNH 234
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ +PA + N ++ L LDLS N + +P+ + QL+ ++N V +P F NL
Sbjct: 259 LTELPAEIKN-LSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNL 315
Query: 72 TRLSYLGLGGNQL 84
L +LG+ GN L
Sbjct: 316 CNLQFLGVEGNPL 328
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 364 KLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 412
K + L L ++ N+LT +P+ ++NL+ L LDLS N+L +P +L S
Sbjct: 245 KYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 43/258 (16%)
Query: 181 YIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSL 240
++R S+ L + ++TL LDL N+ ++R + F G L +A L
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKG-LQHLYA-------L 83
Query: 241 NLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPID 300
L N++ + R L+ + + N + + P+ L EL++ NR R
Sbjct: 84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIR---- 136
Query: 301 DTKTRVP---FPKLR---IIDLSYN----------RFTGVLPIWYLHGNDIQM----ERI 340
+VP F LR I++ N F G L + YL ++ ++ + +
Sbjct: 137 ----KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDL 191
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
T + L N+ Q LE L + + L L + HN + SL L L L L +N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Query: 401 KLAGRIPTQLASLNYLSV 418
KL+ R+P L L L V
Sbjct: 252 KLS-RVPAGLPDLKLLQV 268
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPD-IFTNLTRLSYLGLGG 81
+ +L L +S N P+ S+L +LR+ D N + K+P +F+ L ++ + +GG
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHD----NRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 82 NQLIGS-IPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYL 140
N L S F+ L L YL +S LT I + L L
Sbjct: 157 NPLENSGFEPGAFDGLKLN------------------YLRISEAKLTGIPKDLPETLNEL 198
Query: 141 HLDSNLLQG 149
HLD N +Q
Sbjct: 199 HLDHNKIQA 207
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIP-SSFSNLQQLRLLDLRYNNF 60
+LR+L S+ I ++ + +L +LD ++ S+F +L++L LD+ Y N
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 61 VGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFE-LLNLTF------AISVAAWMWDIGV 113
IF LT L+ L + GN + S++F NLTF + +W +
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 114 HTLIYLELSRNFLTNIDHLPWKNLEYLH-LDSNL-----LQGSLLNLPPHMREFSISRNN 167
H L L +S N L +D + L L LD + +G L + P + F+++ N+
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
Query: 168 LT 169
+
Sbjct: 557 VA 558
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 362 LGKLNSLKSLNISHNNL-TGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRP 420
+G+L +LK LN++HN + + +P+ NLT L +DLS N + Q ++N L
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------QTITVNDLQFLR 177
Query: 421 GGPQFN 426
PQ N
Sbjct: 178 ENPQVN 183
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 24/230 (10%)
Query: 207 TLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDV 266
TLDL + MNK S S + S + L+ N G S + L +D+
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 267 GNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNR----FT 322
N +++ L ELQ L + + + + + + KL +D+SY F
Sbjct: 384 SFNGAIIMSANFMG-LEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 323 GV------LPIWYLHGNDIQMERILTTFAT------IDLSSNRFQGEILEVLGKLNSLKS 370
G+ L + GN + + FA +DLS + + V L+ L+
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Query: 371 LNISHNNLTGGIPSSLRNLTELESLDLSSNKLA------GRIPTQLASLN 414
LN+SHNNL S L L +LD S N++ P LA N
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
Query: 15 IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRL 74
IP+S N +DLSFN SFSN +L+ LDL + L L
Sbjct: 30 IPSSTKN-------IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 75 SYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWM-----WDIG-VHTLIYLELSRNFLTN 128
S L L GN + P S L +L ++V + + IG + TL L ++ NF+ +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 129 IDHLP-----WKNLEYLHLDSNLLQGSLLNLPPHMRE 160
LP NL ++ L N +Q +N +RE
Sbjct: 143 CK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 173/427 (40%), Gaps = 69/427 (16%)
Query: 2 TLRNLSSSYFMGSIPAS---LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYN 58
++RNLS S S ++ LG T L LDLS+N+ + SF+ L QL L YN
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 59 NFVGKIPDIFTNLTRLSYLGLGGNQLIGSIP-SSIFELLNLTFAISVAAWMWDIGVHTLI 117
N L + YL L + SI +S+ ++ + +F W+ L
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ-----WL-----KCLE 332
Query: 118 YLELSRNFLTNIDHLPWK---NLEYLHLD---------SNLLQGSLLNLPPHMREFSISR 165
+L + N + I + NL+YL L +N SL + P H+ ++++
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI--LNLTK 390
Query: 166 NNLTGEIPSSFCNLSYIRFFDSSNNS----LSGQILQCLGNSTLDTLDLGMNNFQDMRMN 221
N ++ +F L ++ D N L+GQ + L N + + L N + + N
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN--IFEIYLSYNKYLQLTRN 448
Query: 222 KFS--GSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279
F+ SL + + L N + P P R+L ++D+ NN I + L
Sbjct: 449 SFALVPSLQRLMLRRVALK----NVDSSPSPFQP----LRNLTILDLSNNNIANINDDML 500
Query: 280 DVLPELQVLTLRSNRFR---------GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 330
+ L +L++L L+ N GPI K L I++L N F +
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG---LSHLHILNLESNGFDEI------ 551
Query: 331 HGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPS----SL 386
+++ + L IDL N V SLKSLN+ N +T +
Sbjct: 552 ---PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 387 RNLTELE 393
RNLTEL+
Sbjct: 609 RNLTELD 615
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNF 60
+T+ NL+ + + +PA+ +QL LD+ FN+ S P L L++L+L++N
Sbjct: 27 ITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 61 VGKIPDIFTNLTRLSYLGLGGNQL 84
F T L+ L L N +
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSI 109
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIP-SSFSNLQQLRLLDLRYNNF 60
+LR+L S+ I ++ + +L +LD ++ S+F +L++L LD+ Y N
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 61 VGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFE-LLNLTF------AISVAAWMWDIGV 113
IF LT L+ L + GN + S++F NLTF + +W +
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 114 HTLIYLELSRNFLTNIDHLPWKNLEYLH-LDSNL-----LQGSLLNLPPHMREFSISRNN 167
H L L +S N L +D + L L LD + +G L + P + F+++ N+
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 551
Query: 168 LT 169
+
Sbjct: 552 VA 553
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 362 LGKLNSLKSLNISHNNL-TGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRP 420
+G+L +LK LN++HN + + +P+ NLT L +DLS N + Q ++N L
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------QTITVNDLQFLR 172
Query: 421 GGPQFN 426
PQ N
Sbjct: 173 ENPQVN 178
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 24/230 (10%)
Query: 207 TLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDV 266
TLDL + MNK S S + S + L+ N G S + L +D+
Sbjct: 319 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 378
Query: 267 GNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNR----FT 322
N +++ L ELQ L + + + + + + KL +D+SY F
Sbjct: 379 SFNGAIIMSANFMG-LEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFD 436
Query: 323 GV------LPIWYLHGNDIQMERILTTFAT------IDLSSNRFQGEILEVLGKLNSLKS 370
G+ L + GN + + FA +DLS + + V L+ L+
Sbjct: 437 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 496
Query: 371 LNISHNNLTGGIPSSLRNLTELESLDLSSNKLA------GRIPTQLASLN 414
LN+SHNNL S L L +LD S N++ P LA N
Sbjct: 497 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 546
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
Query: 15 IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRL 74
IP+S N +DLSFN SFSN +L+ LDL + L L
Sbjct: 25 IPSSTKN-------IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 75 SYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWM-----WDIG-VHTLIYLELSRNFLTN 128
S L L GN + P S L +L ++V + + IG + TL L ++ NF+ +
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Query: 129 IDHLP-----WKNLEYLHLDSNLLQGSLLNLPPHMRE 160
LP NL ++ L N +Q +N +RE
Sbjct: 138 CK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 173/427 (40%), Gaps = 69/427 (16%)
Query: 2 TLRNLSSSYFMGSIPAS---LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYN 58
++RNLS S S ++ LG T L LDLS+N+ + SF+ L QL L YN
Sbjct: 233 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 292
Query: 59 NFVGKIPDIFTNLTRLSYLGLGGNQLIGSIP-SSIFELLNLTFAISVAAWMWDIGVHTLI 117
N L + YL L + SI +S+ ++ + +F W+ L
Sbjct: 293 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ-----WL-----KCLE 342
Query: 118 YLELSRNFLTNIDHLPWK---NLEYLHLD---------SNLLQGSLLNLPPHMREFSISR 165
+L + N + I + NL+YL L +N SL + P H+ ++++
Sbjct: 343 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI--LNLTK 400
Query: 166 NNLTGEIPSSFCNLSYIRFFDSSNNS----LSGQILQCLGNSTLDTLDLGMNNFQDMRMN 221
N ++ +F L ++ D N L+GQ + L N + + L N + + N
Sbjct: 401 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN--IFEIYLSYNKYLQLTRN 458
Query: 222 KFS--GSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279
F+ SL + + L N + P P R+L ++D+ NN I + L
Sbjct: 459 SFALVPSLQRLMLRRVALK----NVDSSPSPFQP----LRNLTILDLSNNNIANINDDML 510
Query: 280 DVLPELQVLTLRSNRFR---------GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 330
+ L +L++L L+ N GPI K L I++L N F +
Sbjct: 511 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG---LSHLHILNLESNGFDEI------ 561
Query: 331 HGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPS----SL 386
+++ + L IDL N V SLKSLN+ N +T +
Sbjct: 562 ---PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 618
Query: 387 RNLTELE 393
RNLTEL+
Sbjct: 619 RNLTELD 625
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNF 60
+T+ NL+ + + +PA+ +QL LD+ FN+ S P L L++L+L++N
Sbjct: 37 ITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 61 VGKIPDIFTNLTRLSYLGLGGNQL 84
F T L+ L L N +
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSI 119
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 173/427 (40%), Gaps = 69/427 (16%)
Query: 2 TLRNLSSSYFMGSIPAS---LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYN 58
++RNLS S S ++ LG T L LDLS+N+ + SF+ L QL L YN
Sbjct: 228 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 287
Query: 59 NFVGKIPDIFTNLTRLSYLGLGGNQLIGSIP-SSIFELLNLTFAISVAAWMWDIGVHTLI 117
N L + YL L + SI +S+ ++ + +F W+ L
Sbjct: 288 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ-----WL-----KCLE 337
Query: 118 YLELSRNFLTNIDHLPWK---NLEYLHLD---------SNLLQGSLLNLPPHMREFSISR 165
+L + N + I + NL+YL L +N SL + P H+ ++++
Sbjct: 338 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI--LNLTK 395
Query: 166 NNLTGEIPSSFCNLSYIRFFDSSNNS----LSGQILQCLGNSTLDTLDLGMNNFQDMRMN 221
N ++ +F L ++ D N L+GQ + L N + + L N + + N
Sbjct: 396 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN--IFEIYLSYNKYLQLTRN 453
Query: 222 KFS--GSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279
F+ SL + + L N + P P R+L ++D+ NN I + L
Sbjct: 454 SFALVPSLQRLMLRRVALK----NVDSSPSPFQP----LRNLTILDLSNNNIANINDDML 505
Query: 280 DVLPELQVLTLRSNRFR---------GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 330
+ L +L++L L+ N GPI K L I++L N F +
Sbjct: 506 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG---LSHLHILNLESNGFDEI------ 556
Query: 331 HGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPS----SL 386
+++ + L IDL N V SLKSLN+ N +T +
Sbjct: 557 ---PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 613
Query: 387 RNLTELE 393
RNLTEL+
Sbjct: 614 RNLTELD 620
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNF 60
+T+ NL+ + + +PA+ +QL LD+ FN+ S P L L++L+L++N
Sbjct: 32 ITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 61 VGKIPDIFTNLTRLSYLGLGGNQL 84
F T L+ L L N +
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSI 114
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 164/401 (40%), Gaps = 56/401 (13%)
Query: 26 LAYLDLSFNSFSG-HIPSSFSNLQQLRLLDLRYNNFVGK--IPDIFTNLTRLSYLGLGGN 82
L +LDLSFN+F I F N+ QL+ L L + +P N++++ L LG
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV-LLVLGET 150
Query: 83 QLIGSIPSSI----FELLNLTFAISVA-AWMWDIGVHTLIYLELSRNFLTNIDHLPWKNL 137
P + E L++ F + ++ D+ V T+ LELS NI + N
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS-----NIKCVLEDN- 204
Query: 138 EYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNL------SYIRFFDSSNNS 191
+ L L + + +++ NN+ +SF + + + +F SN
Sbjct: 205 -----KCSYFLSILAKLQTNPKLSNLTLNNIETTW-NSFIRILQLVWHTTVWYFSISNVK 258
Query: 192 LSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSL---PQTFAKSCV----LVSLNLNG 244
L GQ+ D + + + +++ + PQ++ + + ++G
Sbjct: 259 LQGQL-------DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 245 NRLEGPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTK 303
R+ L PS ++ HL D NN + DT L EL+ L L+ N+ + +
Sbjct: 312 TRMVHMLCPSKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
Query: 304 TRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLG 363
L+ +D+S N + + D + + ++++SSN I L
Sbjct: 369 MTTQMKSLQQLDISQNSVS-----YDEKKGDCSWTK---SLLSLNMSSNILTDTIFRCLP 420
Query: 364 KLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 404
+K L++ H+N IP + L L+ L+++SN+L
Sbjct: 421 P--RIKVLDL-HSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 363 GKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA-----GRIPTQLASLNYLS 417
K++ L+ S+N LT + + +LTELE+L L N+L + TQ+ SL L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 418 VRPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSTD 451
+ ++ D S L +S + TD
Sbjct: 381 ISQNSVSYDEKKGDC-SWTKSLLSLNMSSNILTD 413
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 365 LNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGG-- 422
L+ L+ L ISHN + S + ELE LDLS NKL +L +L +
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFD 103
Query: 423 --PQFNTFGNDSYSGNSGLCGFPLSKS 447
P FGN S GL L KS
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKS 130
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 44 FSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAIS 103
NL+ L+ L+L YN +G F +L L + L P S F+ L+L ++
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 104 VAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSI 163
++ + D L+ L ++ HL + + D ++ + +LL + + +
Sbjct: 431 LSHCLLDTSNQHLLA------GLQDLRHLNLQGNSFQ--DGSISKTNLLQMVGSLEILIL 482
Query: 164 SRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQ 216
S NL +F L + D S+NSL+G + L + L++ NN +
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR 535
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 109/443 (24%), Positives = 176/443 (39%), Gaps = 96/443 (21%)
Query: 12 MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNL 71
+ IP +L N L+ SFN ++FS L L LDL D F +
Sbjct: 23 LREIPDTLPNTT---EVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSH 79
Query: 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131
+L+ + L GN LI +S+ G L +L L++ ++N++
Sbjct: 80 HQLNTIVLTGNPLIFMAETSL------------------TGPKFLKHLFLTQTGISNLEF 121
Query: 132 LP---WKNLEYLHLDSNLLQGSLLNLPPH-------MREFS------ISR---------- 165
+P +NLE LHL SN + S +NLP + + +F ISR
Sbjct: 122 IPVHNLENLESLHLGSNHI--SSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQAT 179
Query: 166 --------NNLTGEIPSSFCNLSY--IRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNF 215
N++ G P +F + + ++F S N + I + L NSTL +L LG F
Sbjct: 180 NLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFI---IFKGLQNSTLQSLWLGT--F 234
Query: 216 QDMRMNKFSGSLPQTFAKSC--VLVSLNLNGNRLEGPLPPSLVNC-RHLEVIDVGNNQIN 272
+D + + TF C + S+NL +R L S C ++ +D+ +N
Sbjct: 235 EDTDDQYLTSA---TFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLN 290
Query: 273 DTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHG 332
P ++ + L+ L L +N F FP LR DL Y+ G
Sbjct: 291 G-LPSGIEGMNSLKKLVLNANSFDQLCQ--INAASFPSLR--DL------------YIKG 333
Query: 333 NDIQME------RILTTFATIDLSSNRFQGEILE--VLGKLNSLKSLNISHNNLTGGIPS 384
N +++ L +DLS + + L L L+ LN+S+N G
Sbjct: 334 NMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ 393
Query: 385 SLRNLTELESLDLSSNKLAGRIP 407
+ + +LE LD++ L + P
Sbjct: 394 AFKECPQLELLDVAFTHLHVKAP 416
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 44/175 (25%)
Query: 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIP---------------- 65
++ L YL+LS+N G +F QL LLD+ + + K P
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 66 ---------DIFTNLTRLSYLGLGGN-------------QLIGSIPSSIFELLNLTFAIS 103
+ L L +L L GN Q++GS+ I NL +I
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNL-LSID 491
Query: 104 VAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHM 158
A+ G+ + +L+LS N LT +L+ L+L N+ ++ +PPH+
Sbjct: 492 QQAFH---GLRNVNHLDLSHNSLTGDSMDALSHLKGLYL--NMASNNIRIIPPHL 541
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (8%)
Query: 242 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDD 301
L+GNR+ S +CR+L ++ + +N + L L+ L L N +D
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 302 TKTR-------VPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQME-------RILTTFATI 347
T R + + + +L F G+ + YL+ D ++ R L +
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 348 DLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA---G 404
L NR L+SL L + N++ P + R+L L +L L +N L+
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPA 217
Query: 405 RIPTQLASLNYLSV 418
+ L SL YL +
Sbjct: 218 EVLVPLRSLQYLRL 231
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 41 PSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFE------ 94
P F L L+ L L+ NN + F +L L++L L GN+ I S+P F
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSVPEHAFRGLHSLD 179
Query: 95 --LLNLTFAISVAAWMW-DIGVHTLIYLELSRNFLTNIDHL------PWKNLEYLHLDSN 145
LL+ V + D+G +YL F N+ L P ++L+YL L+ N
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYL-----FANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 116 LIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLT 169
L YL N LTN+D P L YL+ D+N L ++ P + + +RN LT
Sbjct: 87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT 140
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 97/241 (40%), Gaps = 65/241 (26%)
Query: 3 LRNLSSSY-FMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYN--- 58
L+ L+ SY +G + +S + ++AY+DL N + +F L++L+ LDLR N
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 59 --NFVGKIPDIF---------------TNLTRLS-------------------------- 75
+F+ IPDIF NL LS
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 76 --YLGLGGNQLIGSIPSSIFELLNLTFAISVAAW----MWDI--GVHTLIYLELSRNFLT 127
+ G+Q PS E L L + AW WD+ G+ L L L+ N+L
Sbjct: 436 NRFSSCSGDQTPSENPS--LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 128 NI-----DHLPWKNLEYLHLDSNLLQG-SLLNLPPHMREFSISRNNLTGEIPSSFCNLSY 181
++ HL L L L+SN L S +LP ++ ISRN L P F +LS
Sbjct: 494 SLPPGVFSHL--TALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV 551
Query: 182 I 182
+
Sbjct: 552 L 552
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 97/244 (39%), Gaps = 57/244 (23%)
Query: 167 NLTGEIPSS-FCNLSYIRFFDSSNNSLS---GQILQCLGNSTLDTLDLGMNNFQDMRMNK 222
NL GE+ SS F L + + D N ++ Q + L L TLDL N +
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL--EKLQTLDLRDNALTTIH--- 378
Query: 223 FSGSLPQTFAKSCVLVSL---NLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279
F S+P F LV+L NL N + ++ LE +D+ ++L
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIH-------LSENRLENLDI---------LYFL 422
Query: 280 DVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMER 339
+P LQ+L L NRF D +T P L + F G E
Sbjct: 423 LRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQL------FLG--------------EN 461
Query: 340 ILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSS 399
+L +L + F+G L+ L+ L ++HN L P +LT L L L+S
Sbjct: 462 MLQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 400 NKLA 403
N+L
Sbjct: 514 NRLT 517
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 263 VIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFT 322
+D N ++N H EL+ L +N F ++ T P+LR I+ S N+ T
Sbjct: 15 TVDCSNQKLNKIPEHIPQYTAELR---LNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 323 GVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGI 382
+ + + + I L+SNR + ++ L SLK+L + N +T
Sbjct: 71 DIEEGAFEGASGVN---------EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121
Query: 383 PSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418
S L+ + L L N++ P +L+ LS
Sbjct: 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 29 LDLSFNSFSGHIPSSFSNLQ-QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGS 87
L+LS N +G S F L ++++LDL +NN + IP T+L L L + NQL S
Sbjct: 433 LNLSSNMLTG---SVFRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL-KS 487
Query: 88 IPSSIFELLNLTFAISVAAWMWDIGVHTLIYL 119
+P +F+ L I + WD + YL
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 264 IDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTG 323
++ N D+ L LQ L L+ N + L +D+S N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 324 VLPIWYLHGND---IQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTG 380
H D E IL ++LSSN G + L +K L++ HNN
Sbjct: 418 -------HAYDRTCAWAESILV----LNLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIM 463
Query: 381 GIPSSLRNLTELESLDLSSNKLAGRIP----TQLASLNYL 416
IP + +L L+ L+++SN+L +P +L SL Y+
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 239 SLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGP 298
+L+L+ N + P + L V+ + +N+I H +L+ L + NR +
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN- 114
Query: 299 IDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRF-QGE 357
+ P LR +DLS+N F VLP+ GN LT + LS+ +F Q +
Sbjct: 115 ----ISCCPMASLRHLDLSFNDF-DVLPVCKEFGN-------LTKLTFLGLSAAKFRQLD 162
Query: 358 ILEVLGKLNSLKSLNISHNNLTGGIPSSLR 387
+L V S L++ ++ GG SL+
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQ 192
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 5 NLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKI 64
NLSS+ GS+ L ++ LDL N IP ++LQ L+ L++ N + +
Sbjct: 434 NLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ-LKSV 488
Query: 65 PD-IFTNLTRLSYLGLGGNQLIGSIP 89
PD +F LT L Y+ L N + P
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 117
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ LN N +T
Sbjct: 118 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFG-NQVT 163
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 164 DLKP--LANLTTLERLDISSNKVS 185
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 102
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 103 -LANLTNLT 110
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 117
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ LN N +T
Sbjct: 118 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFG-NQVT 163
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 164 DLKP--LANLTTLERLDISSNKVS 185
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 102
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 103 -LANLTNLT 110
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 236 VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRF 295
++ L+L+ NRL LPP+L R LEV+ +N + + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 296 RGPIDDTKTRVPFPKLRIIDLSYN 319
+ + V P+L +++L N
Sbjct: 521 QQSA-AIQPLVSCPRLVLLNLQGN 543
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 236 VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRF 295
++ L+L+ NRL LPP+L R LEV+ +N + + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 296 RGPIDDTKTRVPFPKLRIIDLSYN 319
+ + V P+L +++L N
Sbjct: 521 QQSA-AIQPLVSCPRLVLLNLQGN 543
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 143/350 (40%), Gaps = 95/350 (27%)
Query: 71 LTRLSYLGLGGNQLIGSIP-SSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNI 129
LT L YL L GNQ+ P S++ +L NL N +T+I
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIG---------------------TNKITDI 103
Query: 130 DHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFD-SS 188
L +NL ++RE ++ +N++ P NL+ + +
Sbjct: 104 SAL--QNL------------------TNLRELYLNEDNISDISP--LANLTKXYSLNLGA 141
Query: 189 NNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
N++LS L L N T G+ N+ + +K P A L SL+LN N++E
Sbjct: 142 NHNLSD--LSPLSNXT------GL-NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190
Query: 249 GPLPPS--------------------LVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVL 288
P + + N L + +GNN+I D P L L +L L
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWL 248
Query: 289 TLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATID 348
+ +N+ I D KL+ +++ N+ + DI + L+ ++
Sbjct: 249 EIGTNQ----ISDINAVKDLTKLKXLNVGSNQIS-----------DISVLNNLSQLNSLF 293
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLS 398
L++N+ E EV+G L +L +L +S N++T P L +L++ +S D +
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSADFA 341
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N+L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L NQL +P+ +
Sbjct: 155 LANNQLT-ELPAGLL 168
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 135 KNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFCNLSYIRFFDSSNN 190
K+ LHL NLL SL L P+ R + ++ R LT ++ + L + D S+N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---LPVLGTLDLSHN 87
Query: 191 SLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
L Q L LG + L LD+ N + + G L L L GN L+
Sbjct: 88 QL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------GELQELYLKGNELK 137
Query: 249 GPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
LPP L+ LE + + NNQ+ + L+ L L L L+ N
Sbjct: 138 T-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 135 KNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFCNLSYIRFFDSSNN 190
K+ LHL NLL SL L P+ R + ++ R LT ++ + L + D S+N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---LPVLGTLDLSHN 87
Query: 191 SLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
L Q L LG + L LD+ N + + G L L L GN L+
Sbjct: 88 QL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------GELQELYLKGNELK 137
Query: 249 GPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
LPP L+ LE + + NNQ+ + L+ L L L L+ N
Sbjct: 138 T-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N+L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L NQL +P+ +
Sbjct: 155 LANNQLT-ELPAGLL 168
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 135 KNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFCNLSYIRFFDSSNN 190
K+ LHL NLL SL L P+ R + ++ R LT ++ + L + D S+N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---LPVLGTLDLSHN 87
Query: 191 SLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
L Q L LG + L LD+ N + + G L L L GN L+
Sbjct: 88 QL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------GELQELYLKGNELK 137
Query: 249 GPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
LPP L+ LE + + NNQ+ + L+ L L L L+ N
Sbjct: 138 T-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N+L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L NQL +P+ +
Sbjct: 155 LANNQLT-ELPAGLL 168
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N+L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L NQL +P+ +
Sbjct: 155 LANNQLT-ELPAGLL 168
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 135 KNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFCNLSYIRFFDSSNN 190
K+ LHL NLL SL L P+ R + ++ R LT ++ + L + D S+N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---LPVLGTLDLSHN 87
Query: 191 SLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
L Q L LG + L LD+ N + + G L L L GN L+
Sbjct: 88 QL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------GELQELYLKGNELK 137
Query: 249 GPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
LPP L+ LE + + NNQ+ + L+ L L L L+ N
Sbjct: 138 T-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 13/179 (7%)
Query: 227 LPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPE-- 284
+ ++F VLV + G +G L CR+L+ +D+ + ++D HWL P+
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDG-LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 285 -----LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMER 339
L + L S ++ TR P K L NR + + L Q+E
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLK----SLKLNRAVPLEKLATLLQRAPQLEE 239
Query: 340 ILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLS 398
+ T T ++ + + G + L L+ L+ + + +P+ + L +L+LS
Sbjct: 240 LGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 42/286 (14%)
Query: 40 IPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIF----EL 95
+ +S ++L L+ YN GK+P F + +L+ L L NQ I IP++ ++
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQV 379
Query: 96 LNLTFAISVAAWMWDI----GVHTLIYLELSRNFLTNIDH--------LPWK--NLEYLH 141
NL+FA + ++ +I V ++ S N + ++D P+K N+ ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 142 LDSNLLQ---GSLLNLPPHMREFSISRNNLTGEIP--------SSFCNLSYIRFFDSSNN 190
L +N + L + + ++ N LT EIP +F N + D N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498
Query: 191 SLSGQILQCLGNSTLDTL---DLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRL 247
L+ ++ +TL L DL N+F + S + F + + GNR
Sbjct: 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG---IRNQRDAQGNRT 554
Query: 248 EGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
P + C L + +G+N I + P + VL ++ N
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDN 597
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 36/199 (18%)
Query: 240 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRF---- 295
LNL N ++ + + RHLE++ + N + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 296 ----------------RGPIDDTKTRV--PFPKLRIIDL---------SYNRFTGVLPIW 328
PI+ + P LR +DL S F G++ +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 329 YLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK-----LNSLKSLNISHNNLTGGIP 383
YL+ ++ I A + L G L+++ L SL+ L + H +
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 384 SSLRNLTELESLDLSSNKL 402
++ +L LE L+LS N L
Sbjct: 220 NAFDDLKSLEELNLSHNNL 238
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 43 SFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82
+F +L+ L L+L +NN + D+FT L RL + L N
Sbjct: 221 AFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 147/383 (38%), Gaps = 88/383 (22%)
Query: 28 YLDLSFNSFSGHIPSSFSNLQQLR-------------------------LLDLRYNNFVG 62
Y+DLS NS + +SFS LQ L+ +L L YN F+
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 63 KIPDIFTNLTRLSYLGLGGNQLIGSI-------PSSIFELL----NLTFAISVAAWMWDI 111
F L L L L L G++ P + E+L N I A++ +
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF--L 151
Query: 112 GVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREF---------- 161
+ L+L+ N + +I N + H LL+ S + L M E+
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHF--TLLRLSSITL-QDMNEYWLGWEKCGNP 208
Query: 162 ----SISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQ--CLGNSTLDTLDLGMNNF 215
SI+ +L+G + F RFFD +++G +Q L NS G NF
Sbjct: 209 FKNTSITTLDLSG---NGFKESMAKRFFD----AIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 216 QDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTF 275
+D F G L + K+C +L+ +++ L + LE + + N+IN
Sbjct: 262 KDPDNFTFKG-LEASGVKTC-----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 276 PHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGN-- 333
+ L L+ L L +N+ + VP D ++R T + IW LH N
Sbjct: 316 DNAFWGLTHLKELALDTNQLKS--------VP-------DGIFDRLTSLQKIW-LHTNPW 359
Query: 334 DIQMERILTTFATIDLSSNRFQG 356
D RI ++ +S + QG
Sbjct: 360 DCSCPRIDYLSRWLNKNSQKEQG 382
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 122
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ L+ N +T
Sbjct: 123 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVT 168
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 169 DLKP--LANLTTLERLDISSNKVS 190
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 107
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 108 -LANLTNLT 115
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319
+L I+ NNQ+ D P L L +L + + +N+ I D L + L N
Sbjct: 68 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNN 121
Query: 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379
+ T + P+ + LT ++LSSN + L L SL+ L+ N +T
Sbjct: 122 QITDIDPL-----------KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVT 167
Query: 380 GGIPSSLRNLTELESLDLSSNKLA 403
P L NLT LE LD+SSNK++
Sbjct: 168 DLKP--LANLTTLERLDISSNKVS 189
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 349 LSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 408
L ++R + ++ + LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 50 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP- 106
Query: 409 QLASLNYLS 417
LA+L L+
Sbjct: 107 -LANLTNLT 114
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 52/207 (25%)
Query: 240 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRF---- 295
LNL N ++ + + RHLE++ + N + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 296 ----------------RGPIDDTKTRV--PFPKLRIIDL---------SYNRFTGVLPIW 328
PI+ + P LR +DL S F G++ +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 329 YLHGNDIQMERI-----LTTFATIDLSSNR--------FQGEILEVLGKLNSLKSLNISH 375
YL+ ++ I L ++LS NR FQG L SL+ L + H
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQG--------LTSLRKLWLMH 211
Query: 376 NNLTGGIPSSLRNLTELESLDLSSNKL 402
+ ++ +L LE L+LS N L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 43 SFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82
+F +L+ L L+L +NN + D+FT L RL + L N
Sbjct: 221 AFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 36/173 (20%)
Query: 240 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPI 299
L+L NR++ + HLE +++ N ++ P + L L+ L LRSNR
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR----- 91
Query: 300 DDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEIL 359
L++I L FTG L+ +D+S N+ +
Sbjct: 92 -----------LKLIPLGV--FTG-----------------LSNLTKLDISENKIVILLD 121
Query: 360 EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 412
+ L +LKSL + N+L + L LE L L L IPT+ S
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALS 173
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 15 IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRL 74
IP + ++ L LD+S N + F +L L+ L++ N+ V F+ L L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 75 SYLGLGGNQL-----------------------IGSIPSSIFELLNLTFAISVAAWMW-D 110
L L L I +I F+ L + ++ W + D
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 111 IGVHTLIY------LELSRNFLTNIDHLPWKNLEYLHLDS------NLLQGSLLNLPPHM 158
+Y L ++ LT + +L ++L YL + + ++GS+L+ +
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 159 REFSISRNNLTGEIPSSFCNLSYIRFFDSSNN---SLSGQILQCLGNSTLDTLDLGMN 213
+E + L P +F L+Y+R + S N +L + +GN L+TL L N
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN--LETLILDSN 330
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 22/265 (8%)
Query: 156 PHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNF 215
PH+ E ++ N ++ P +F NL +R +N L L LG T G++N
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFT------GLSNL 106
Query: 216 Q--DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIND 273
D+ NK L F L SL + N L + LE + + +
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 274 TFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGN 333
L L L VL LR D + R+ +L+++++S+ + + L+G
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLEISHWPYLDTMTPNCLYGL 224
Query: 334 DIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELE 393
++ ++ ++ + L L+ LN+S+N ++ S L L L+
Sbjct: 225 NL---------TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
Query: 394 SLDLSSNKLAGRIPTQLASLNYLSV 418
+ L +LA P LNYL V
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRV 300
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 135 KNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFCNLSYIRFFDSSNN 190
K+ LHL NLL SL L P+ R + ++ R LT ++ + L + D S+N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---LPVLGTLDLSHN 87
Query: 191 SLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
L Q L LG + L LD+ N + + G L L L GN L+
Sbjct: 88 QL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------GELQELYLKGNELK 137
Query: 249 GPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
LPP L+ LE + + NN + + L+ L L L L+ N
Sbjct: 138 T-LPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L N L +P+ +
Sbjct: 155 LANNDLT-ELPAGLL 168
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 77 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 126
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N L
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 79 LGGNQLIGSIPSSIF 93
L N L +P+ +
Sbjct: 156 LANNNLT-ELPAGLL 169
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 122 SRNFLTNIDHLPWKNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFC 177
RN LP K+ LHL NLL SL L P+ R + ++ R LT ++ +
Sbjct: 20 KRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT-- 76
Query: 178 NLSYIRFFDSSNNSLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235
L + D S+N L Q L LG + L LD+ N + + G
Sbjct: 77 -LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------G 125
Query: 236 VLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNR 294
L L L GN L+ LPP L+ LE + + NN + + L+ L L L L+ N
Sbjct: 126 ELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
Query: 295 F 295
Sbjct: 185 L 185
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 239 SLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFR-- 296
L+L+GN L L LE++++ +N + +T L+ L L+ L L +N +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL 95
Query: 297 --GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERIL-----TTFATIDL 349
GP +T + I +S +R G I YL N I M R L + +DL
Sbjct: 96 LVGPSIET---LHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 350 SSNRFQG-EILEVLGKLNSLKSLNISHN---NLTGGIPSSLRNLTELESLDLSSNKLAGR 405
N E+ ++L+ LN+ +N ++ G + +L++LDLSSNKLA
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLAFM 206
Query: 406 IP--TQLASLNYLSVR 419
P A + ++S+R
Sbjct: 207 GPEFQSAAGVTWISLR 222
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 48/213 (22%)
Query: 119 LELSRNFLTNI---DHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSS 175
L+LS N L+ I D P+ LE L+L SN+L +L
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-----------------------D 75
Query: 176 FCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235
+LS +R D +NN + + L +++TL NN + ++ G A +
Sbjct: 76 LESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131
Query: 236 VLVSLNLNGNRLEGPLPPSLVNCR-HLEVIDVGNNQINDT-FPHWLDVLPELQVLTLRSN 293
+ + +L+ EG CR ++ +D+ N+I+ F L+ L L+ N
Sbjct: 132 ITMLRDLD----EG--------CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 294 RFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLP 326
I D K +V F KL+ +DLS N+ + P
Sbjct: 180 ----FIYDVKGQVVFAKLKTLDLSSNKLAFMGP 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 135 KNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFCNLSYIRFFDSSNN 190
K+ LHL NLL SL L P+ R + ++ R LT ++ + L + D S+N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---LPVLGTLDLSHN 87
Query: 191 SLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 248
L Q L LG + L LD+ N + + G L L L GN L+
Sbjct: 88 QL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------GELQELYLKGNELK 137
Query: 249 GPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
LPP L+ LE + + NN + + L+ L L L L+ N
Sbjct: 138 T-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L N L +P+ +
Sbjct: 155 LANNNLT-ELPAGLL 168
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 122 SRNFLTNIDHLPWKNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFC 177
RN LP K+ LHL NLL SL L P+ R + ++ R LT ++ +
Sbjct: 19 KRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-- 75
Query: 178 NLSYIRFFDSSNNSLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235
L + D S+N L Q L LG + L LD+ N + + G
Sbjct: 76 -LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------G 124
Query: 236 VLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
L L L GN L+ LPP L+ LE + + NN + + L+ L L L L+ N
Sbjct: 125 ELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L N L +P+ +
Sbjct: 155 LANNNLT-ELPAGLL 168
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 122 SRNFLTNIDHLPWKNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFC 177
RN LP K+ LHL NLL SL L P+ R + ++ R LT ++ +
Sbjct: 19 KRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-- 75
Query: 178 NLSYIRFFDSSNNSLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235
L + D S+N L Q L LG + L LD+ N + + G
Sbjct: 76 -LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------G 124
Query: 236 VLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
L L L GN L+ LPP L+ LE + + NN + + L+ L L L L+ N
Sbjct: 125 ELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L N L +P+ +
Sbjct: 155 LANNNLT-ELPAGLL 168
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNS 367
P L +DLS+N+ LP+ + + L +D+S NR L L L
Sbjct: 76 LPVLGTLDLSHNQLQS-LPL---------LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 368 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403
L+ L + N L P L +LE L L++N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 122 SRNFLTNIDHLPWKNLEYLHLDSNLLQG-SLLNLPPHMR--EFSISRNNLTG-EIPSSFC 177
RN LP K+ LHL NLL SL L P+ R + ++ R LT ++ +
Sbjct: 19 KRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-- 75
Query: 178 NLSYIRFFDSSNNSLSGQILQCLGNS--TLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235
L + D S+N L Q L LG + L LD+ N + + G
Sbjct: 76 -LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------G 124
Query: 236 VLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293
L L L GN L+ LPP L+ LE + + NN + + L+ L L L L+ N
Sbjct: 125 ELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78
LG + L LD+SFN + + L +L+ L L+ N P + T +L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 79 LGGNQLIGSIPSSIF 93
L N L +P+ +
Sbjct: 155 LANNNLT-ELPAGLL 168
>pdb|3NH4|A Chain A, Crystal Structure Of Murine Aminoacylase 3
Length = 327
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 387 RNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDS--YSGNS 437
RNL ++ + LAG + QL ++ +RPG P F F + Y G+S
Sbjct: 232 RNLGSVDFPRTADGDLAGTVHPQLQDHDFEPLRPGEPIFKLFSGEDVLYEGDS 284
>pdb|3NFZ|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-L- Tyrosine
pdb|3NH5|A Chain A, Crystal Structure Of E177a-Mutant Murine Aminoacylase 3
pdb|3NH8|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-S- 1,2-Dichlorovinyl-L-Cysteine
Length = 327
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 387 RNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDS--YSGNS 437
RNL ++ + LAG + QL ++ +RPG P F F + Y G+S
Sbjct: 232 RNLGSVDFPRTADGDLAGTVHPQLQDHDFEPLRPGEPIFKLFSGEDVLYEGDS 284
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 5 NLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKI 64
+LS + + S+ + + + +L L L P F L L+ L L+ N
Sbjct: 85 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 144
Query: 65 PDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRN 124
D F +L L++L L GN+ I S+P F G+H+L L L +N
Sbjct: 145 DDTFRDLGNLTHLFLHGNR-ISSVPERAFR-----------------GLHSLDRLLLHQN 186
Query: 125 FLTNIDHLPWKNLEYL 140
+ ++ +++L L
Sbjct: 187 RVAHVHPHAFRDLGRL 202
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 5 NLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKI 64
+LS + + S+ + + + +L L L P F L L+ L L+ N
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 65 PDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRN 124
D F +L L++L L GN+ I S+P F G+H+L L L +N
Sbjct: 146 DDTFRDLGNLTHLFLHGNR-ISSVPERAFR-----------------GLHSLDRLLLHQN 187
Query: 125 FLTNIDHLPWKNLEYL 140
+ ++ +++L L
Sbjct: 188 RVAHVHPHAFRDLGRL 203
>pdb|1VPR|A Chain A, Crystal Structure Of A Luciferase Domain From The
Dinoflagellate Lingulodinium Polyedrum
Length = 374
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 354 FQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASL 413
F + EV GK++ + + +S++ + IP R+ T L D + L PT L
Sbjct: 287 FXRQATEVGGKISFVFYVKVSNDPESDPIPLQSRDYTALAGRDNAPTNLGKPYPTLAKDL 346
Query: 414 NYLSVRPG 421
+Y R G
Sbjct: 347 DYPKKRDG 354
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400
L +I+ SN+ + + GK+ LK LN++ N L LT L+ + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 401 KLAGRIPTQLASLNYLS 417
P ++YLS
Sbjct: 229 PWDCSCP----RIDYLS 241
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 3 LRNLSSSYF----MGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYN 58
L NL YF + +IP + + +TQL LDL+ N +F NL+ L + L N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 59 NFVGKIPDIF 68
+ + DI
Sbjct: 116 PWDCECRDIM 125
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 33/147 (22%)
Query: 144 SNLLQGSLLNLPPHMREFSISRNNLTG--EIPSSFCNLSYIRFFDSSNNSLSGQILQCLG 201
+NL SL LPPH+ S N+LT E+P S +L D++N L+ L
Sbjct: 79 NNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSL----LVDNNN-------LKALS 127
Query: 202 NSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 261
+ LG++N Q ++ + S +F K ++ ++ N + LPPS L
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNS---SFLK---IIDVDNNSLKKLPDLPPS------L 175
Query: 262 EVIDVGNNQINDTFPHWLDVLPELQVL 288
E I GNNQ L+ LPELQ L
Sbjct: 176 EFIAAGNNQ--------LEELPELQNL 194
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 255 LVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314
L +L+ + +GNNQ+ND P L L +L L N+ I D P L +
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNK----ISDISPLASLPNLIEV 206
Query: 315 DLSYNRFTGVLPIWYL 330
L N+ + V P+ L
Sbjct: 207 HLKDNQISDVSPLANL 222
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 36/213 (16%)
Query: 240 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN----------------DTFPHWLDVLP 283
LNL N ++ + + HLEV+ +G N I + F +WL V+P
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 284 --------ELQVLTLRSNRFRGPIDDTKTRVP------FPKLRIID-LSYNRFTGVLPIW 328
+L+ L LR+N RVP +L+ ++ +S F G+ +
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 329 YLHGNDIQMERI-----LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIP 383
YL+ ++ + L +++S N F L+SLK L + ++ ++
Sbjct: 200 YLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 384 SSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 416
++ L L L+L+ N L+ L YL
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 239 SLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFR-- 296
L+L+GN L L LE++++ +N + +T L+ L L+ L L +N +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL 95
Query: 297 --GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERIL-----TTFATIDL 349
GP +T + I +S +R G I YL N I M R L + +DL
Sbjct: 96 LVGPSIET---LHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 350 SSNRFQG-EILEVLGKLNSLKSLNISHN---NLTGGIPSSLRNLTELESLDLSSNKLA 403
N E+ ++L+ LN+ +N ++ G + +L++LDLSSNKLA
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLA 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,420,455
Number of Sequences: 62578
Number of extensions: 682750
Number of successful extensions: 2229
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 509
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)