Query 037195
Match_columns 502
No_of_seqs 372 out of 4351
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.7E-51 5.9E-56 449.5 35.6 428 1-443 142-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-46 4.9E-51 410.6 31.5 402 1-418 95-551 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.9E-37 4E-42 292.3 6.3 371 2-413 55-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-35 4.1E-40 278.8 8.4 383 25-445 53-458 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2E-34 4.3E-39 260.6 -9.0 380 1-403 70-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.6E-32 3.4E-37 261.1 -4.8 357 2-403 10-375 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 3.5E-32 7.7E-37 246.0 -6.5 255 3-294 49-308 (565)
8 KOG0444 Cytoskeletal regulator 100.0 5.4E-31 1.2E-35 250.7 -5.6 353 22-418 5-366 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.2E-30 2.7E-35 258.9 -3.8 371 1-405 47-467 (1081)
10 KOG0618 Serine/threonine phosp 99.9 4.5E-28 9.7E-33 240.8 -4.9 388 1-417 70-503 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.4E-22 5.2E-27 221.4 27.9 336 15-401 549-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.8E-26 215.7 25.9 333 1-377 560-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 4.2E-22 9.2E-27 204.3 18.0 146 237-414 324-469 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 9.8E-22 2.1E-26 201.6 18.6 266 25-388 202-467 (788)
15 KOG4237 Extracellular matrix p 99.9 2E-24 4.3E-29 195.7 -6.0 284 14-322 60-359 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 3.8E-20 8.3E-25 191.2 12.3 140 25-194 179-318 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 188.1 14.1 182 114-322 199-380 (754)
18 KOG4237 Extracellular matrix p 99.8 5.5E-21 1.2E-25 173.5 -0.8 147 29-214 51-199 (498)
19 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 168.0 1.1 91 308-402 220-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.9E-18 4.2E-23 166.0 1.4 280 3-321 2-319 (319)
21 KOG0617 Ras suppressor protein 99.6 2.3E-18 4.9E-23 139.0 -5.7 85 22-127 31-115 (264)
22 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.7E-22 134.0 -3.0 166 233-415 31-197 (264)
23 PLN03150 hypothetical protein; 99.6 5E-15 1.1E-19 152.9 11.5 120 310-449 419-538 (623)
24 PLN03150 hypothetical protein; 99.2 4E-11 8.7E-16 124.1 8.9 93 2-95 421-513 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.4E-13 9.6E-18 128.1 -5.3 186 3-213 79-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.8E-12 3.8E-17 124.1 -2.1 167 226-412 89-255 (722)
27 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.2E-16 108.8 2.1 129 259-404 284-413 (490)
28 KOG1909 Ran GTPase-activating 99.1 4.7E-12 1E-16 114.4 -2.7 141 258-403 156-311 (382)
29 COG4886 Leucine-rich repeat (L 99.1 1.7E-10 3.7E-15 114.1 7.8 101 28-149 97-200 (394)
30 KOG1909 Ran GTPase-activating 99.0 1.3E-11 2.8E-16 111.6 -2.2 243 133-379 28-311 (382)
31 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.9E-15 96.6 5.9 125 257-397 17-147 (175)
32 COG4886 Leucine-rich repeat (L 99.0 2.8E-10 6E-15 112.6 5.8 190 3-218 97-292 (394)
33 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 108.6 0.8 78 114-191 146-233 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 6.2E-10 1.3E-14 94.5 5.2 127 22-188 17-148 (175)
35 PF13855 LRR_8: Leucine rich r 99.0 3.3E-10 7.2E-15 78.9 2.6 61 342-402 1-61 (61)
36 KOG1259 Nischarin, modulator o 98.9 1.8E-10 3.8E-15 102.1 0.8 133 179-325 283-415 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 7.6E-10 1.7E-14 77.1 3.6 61 24-84 1-61 (61)
38 KOG3207 Beta-tubulin folding c 98.9 3.7E-10 8E-15 105.2 -0.3 63 22-85 119-185 (505)
39 KOG4658 Apoptotic ATPase [Sign 98.8 2.1E-09 4.5E-14 113.9 4.0 104 22-144 543-651 (889)
40 KOG4658 Apoptotic ATPase [Sign 98.8 2.9E-09 6.2E-14 112.9 4.9 103 23-145 522-628 (889)
41 KOG0531 Protein phosphatase 1, 98.7 2.6E-09 5.7E-14 105.8 -0.7 168 114-296 118-290 (414)
42 KOG0531 Protein phosphatase 1, 98.6 7.4E-09 1.6E-13 102.6 -1.6 216 155-403 71-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.8E-09 6E-14 94.6 -4.9 182 205-401 187-374 (419)
44 KOG1859 Leucine-rich repeat pr 98.3 7.5E-09 1.6E-13 102.4 -7.4 57 237-296 166-222 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.2 2.8E-08 6E-13 88.4 -7.3 170 236-414 186-360 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.1 3.7E-07 8E-12 80.3 -1.3 93 22-129 28-135 (388)
47 KOG2982 Uncharacterized conser 98.1 5.6E-07 1.2E-11 80.2 -0.4 39 47-85 70-110 (418)
48 KOG4579 Leucine-rich repeat (L 98.1 2.9E-07 6.2E-12 72.5 -2.1 108 2-131 30-140 (177)
49 KOG4579 Leucine-rich repeat (L 98.1 1.9E-07 4.1E-12 73.5 -3.3 64 341-407 76-139 (177)
50 KOG1859 Leucine-rich repeat pr 98.1 6E-08 1.3E-12 96.2 -7.6 126 134-271 163-291 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.0 4.8E-06 1E-10 52.9 3.2 36 343-379 2-37 (44)
52 PRK15386 type III secretion pr 98.0 3.1E-05 6.8E-10 74.2 9.9 31 367-400 157-187 (426)
53 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 52.8 3.1 36 49-85 2-37 (44)
54 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.8E-11 78.0 -0.3 63 341-403 198-262 (418)
55 COG5238 RNA1 Ran GTPase-activa 98.0 1.3E-06 2.9E-11 76.9 -0.7 119 235-356 185-317 (388)
56 PRK15386 type III secretion pr 97.9 8.9E-05 1.9E-09 71.2 10.2 55 22-82 50-104 (426)
57 KOG3665 ZYG-1-like serine/thre 97.9 8.1E-06 1.8E-10 84.8 2.9 128 1-148 124-263 (699)
58 KOG1644 U2-associated snRNP A' 97.7 8.5E-05 1.8E-09 62.9 6.4 126 26-190 21-150 (233)
59 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.7E-09 62.0 6.1 93 19-130 37-129 (233)
60 KOG4341 F-box protein containi 97.4 2.7E-06 5.9E-11 79.5 -6.9 276 114-402 138-438 (483)
61 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.1E-09 74.9 2.8 68 341-408 194-268 (699)
62 KOG4341 F-box protein containi 97.2 6.2E-06 1.3E-10 77.2 -7.2 87 234-321 345-438 (483)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6.1E-09 62.4 2.3 88 22-128 41-130 (260)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00047 1E-08 61.1 3.4 59 236-296 44-104 (260)
65 PF13306 LRR_5: Leucine rich r 96.8 0.006 1.3E-07 49.5 7.5 65 15-81 3-67 (129)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0073 1.6E-07 49.0 7.9 49 341-392 80-128 (129)
67 KOG2123 Uncharacterized conser 96.5 7.9E-05 1.7E-09 66.2 -5.5 103 237-348 21-123 (388)
68 KOG2123 Uncharacterized conser 96.4 0.00026 5.7E-09 63.0 -2.8 56 341-396 62-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0056 1.2E-07 32.2 1.3 18 344-362 2-19 (22)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.003 6.4E-08 33.3 0.1 17 392-409 2-18 (22)
71 PF08693 SKG6: Transmembrane a 94.6 0.021 4.6E-07 34.6 1.5 28 475-502 13-40 (40)
72 PF13504 LRR_7: Leucine rich r 93.8 0.041 8.9E-07 26.7 1.3 11 368-378 3-13 (17)
73 KOG0473 Leucine-rich repeat pr 93.3 0.0019 4.1E-08 56.2 -6.7 80 2-85 45-124 (326)
74 KOG1947 Leucine rich repeat pr 92.7 0.013 2.9E-07 59.5 -2.9 63 233-295 241-307 (482)
75 smart00370 LRR Leucine-rich re 92.0 0.15 3.3E-06 27.9 2.2 22 71-93 1-22 (26)
76 smart00369 LRR_TYP Leucine-ric 92.0 0.15 3.3E-06 27.9 2.2 22 71-93 1-22 (26)
77 PF04478 Mid2: Mid2 like cell 91.3 0.2 4.3E-06 40.7 3.0 29 474-502 51-79 (154)
78 PF13516 LRR_6: Leucine Rich r 90.1 0.12 2.7E-06 27.6 0.6 19 342-360 2-20 (24)
79 KOG0473 Leucine-rich repeat pr 90.1 0.0043 9.4E-08 54.0 -7.9 85 22-127 40-124 (326)
80 smart00369 LRR_TYP Leucine-ric 90.0 0.32 6.9E-06 26.6 2.2 13 367-379 3-15 (26)
81 smart00370 LRR Leucine-rich re 90.0 0.32 6.9E-06 26.6 2.2 13 367-379 3-15 (26)
82 KOG4308 LRR-containing protein 89.4 0.0012 2.5E-08 66.0 -13.8 33 116-148 89-128 (478)
83 KOG1947 Leucine rich repeat pr 88.7 0.17 3.6E-06 51.5 0.8 136 257-400 186-331 (482)
84 KOG4308 LRR-containing protein 88.6 0.0056 1.2E-07 61.2 -9.7 92 308-404 203-304 (478)
85 KOG3864 Uncharacterized conser 87.0 0.091 2E-06 45.1 -1.9 37 260-296 102-138 (221)
86 KOG3864 Uncharacterized conser 83.8 0.13 2.8E-06 44.2 -2.5 62 24-85 101-165 (221)
87 KOG4242 Predicted myosin-I-bin 81.7 8.8 0.00019 37.8 8.5 35 284-318 355-389 (553)
88 PF01102 Glycophorin_A: Glycop 81.6 0.95 2.1E-05 35.7 1.8 25 476-501 68-92 (122)
89 PF02439 Adeno_E3_CR2: Adenovi 80.7 1.6 3.4E-05 26.1 2.0 24 477-500 8-32 (38)
90 smart00364 LRR_BAC Leucine-ric 78.2 1.6 3.4E-05 23.9 1.4 13 367-379 3-15 (26)
91 smart00365 LRR_SD22 Leucine-ri 74.0 3.1 6.8E-05 22.8 1.9 15 389-403 1-15 (26)
92 smart00368 LRR_RI Leucine rich 70.6 3.7 8.1E-05 22.8 1.8 13 367-379 3-15 (28)
93 PF01034 Syndecan: Syndecan do 70.5 1.5 3.2E-05 29.8 0.1 21 478-498 15-35 (64)
94 PTZ00382 Variant-specific surf 64.5 2.4 5.2E-05 32.1 0.2 7 485-491 77-83 (96)
95 PF05393 Hum_adeno_E3A: Human 63.9 5.3 0.00011 28.9 1.8 26 477-502 35-60 (94)
96 PF01299 Lamp: Lysosome-associ 63.7 5.6 0.00012 37.7 2.6 9 392-400 230-238 (306)
97 KOG3763 mRNA export factor TAP 57.7 4.7 0.0001 40.4 1.0 36 258-293 217-254 (585)
98 PF12191 stn_TNFRSF12A: Tumour 53.5 9 0.0002 30.1 1.7 19 483-501 88-106 (129)
99 PTZ00370 STEVOR; Provisional 52.1 9.7 0.00021 34.8 1.9 12 491-502 272-283 (296)
100 PRK14762 membrane protein; Pro 52.1 23 0.00049 18.9 2.5 21 476-496 3-23 (27)
101 TIGR01478 STEVOR variant surfa 52.0 9.7 0.00021 34.7 1.9 12 491-502 276-287 (295)
102 PHA03099 epidermal growth fact 52.0 12 0.00027 29.4 2.2 25 478-502 106-130 (139)
103 KOG3763 mRNA export factor TAP 49.5 11 0.00025 37.8 2.1 37 341-379 243-283 (585)
104 TIGR03024 arch_pef_cterm PEF-C 47.9 20 0.00043 19.6 1.9 15 487-501 11-25 (26)
105 PF05545 FixQ: Cbb3-type cytoc 47.7 19 0.00041 23.2 2.3 19 482-500 14-32 (49)
106 PF14991 MLANA: Protein melan- 45.1 5.6 0.00012 30.5 -0.5 22 479-500 29-50 (118)
107 PF07204 Orthoreo_P10: Orthore 43.6 12 0.00027 27.5 1.0 28 473-501 41-68 (98)
108 PF02009 Rifin_STEVOR: Rifin/s 41.3 12 0.00027 34.9 0.9 7 494-500 277-283 (299)
109 smart00367 LRR_CC Leucine-rich 39.6 23 0.0005 19.0 1.5 13 389-401 1-13 (26)
110 TIGR00864 PCC polycystin catio 37.6 22 0.00048 43.2 2.4 32 348-379 1-32 (2740)
111 TIGR01167 LPXTG_anchor LPXTG-m 37.0 36 0.00078 19.7 2.2 10 492-501 24-33 (34)
112 PF06024 DUF912: Nucleopolyhed 36.2 16 0.00036 27.9 0.8 9 493-501 83-91 (101)
113 PF03302 VSP: Giardia variant- 35.5 19 0.00042 35.5 1.3 23 477-499 370-392 (397)
114 PF11980 DUF3481: Domain of un 33.5 31 0.00067 25.0 1.7 28 473-500 15-43 (87)
115 PF14610 DUF4448: Protein of u 33.3 22 0.00048 30.9 1.2 20 474-493 157-176 (189)
116 PF08374 Protocadherin: Protoc 33.2 58 0.0012 28.5 3.6 24 475-498 41-64 (221)
117 TIGR01477 RIFIN variant surfac 30.8 32 0.00069 32.8 1.9 8 494-501 331-338 (353)
118 TIGR00864 PCC polycystin catio 29.7 37 0.00079 41.5 2.5 33 315-356 1-33 (2740)
119 PF11353 DUF3153: Protein of u 28.3 43 0.00093 29.6 2.2 29 474-502 180-208 (209)
120 PTZ00208 65 kDa invariant surf 28.3 31 0.00068 33.2 1.3 26 476-501 387-414 (436)
121 TIGR03370 PEPCTERM_Roseo varia 27.8 47 0.001 18.2 1.4 11 491-501 14-24 (26)
122 PF03672 UPF0154: Uncharacteri 26.5 26 0.00057 24.0 0.4 14 482-495 4-17 (64)
123 PF13940 Ldr_toxin: Toxin Ldr, 26.2 64 0.0014 18.7 1.8 18 485-502 18-35 (35)
124 PF02404 SCF: Stem cell factor 26.1 22 0.00048 31.9 0.0 30 472-501 213-242 (273)
125 PF12877 DUF3827: Domain of un 25.8 72 0.0016 33.0 3.4 16 471-486 267-282 (684)
126 PF01102 Glycophorin_A: Glycop 25.8 26 0.00055 27.9 0.3 25 476-500 64-88 (122)
127 PF14654 Epiglycanin_C: Mucin, 24.9 56 0.0012 24.4 1.8 19 481-499 26-44 (106)
128 PTZ00046 rifin; Provisional 24.7 48 0.001 31.7 1.9 8 494-501 336-343 (358)
129 PF06365 CD34_antigen: CD34/Po 24.4 1E+02 0.0022 27.0 3.6 16 485-500 112-127 (202)
130 PF06305 DUF1049: Protein of u 23.7 31 0.00067 23.9 0.3 16 478-493 25-40 (68)
131 PF12301 CD99L2: CD99 antigen 23.6 50 0.0011 28.0 1.6 25 477-501 116-141 (169)
132 PRK10132 hypothetical protein; 23.4 69 0.0015 24.9 2.2 12 483-494 92-103 (108)
133 TIGR01495 ETRAMP Plasmodium ri 23.2 86 0.0019 23.1 2.5 24 478-501 56-79 (85)
134 PHA03265 envelope glycoprotein 21.3 52 0.0011 31.1 1.4 6 496-501 370-375 (402)
135 PF04478 Mid2: Mid2 like cell 21.0 37 0.0008 28.0 0.3 25 474-498 47-71 (154)
136 PF12768 Rax2: Cortical protei 20.8 73 0.0016 29.7 2.3 19 483-501 240-258 (281)
137 PF10661 EssA: WXG100 protein 20.6 65 0.0014 26.6 1.7 23 478-500 121-143 (145)
138 PHA03286 envelope glycoprotein 20.4 1.1E+02 0.0025 30.1 3.5 7 478-484 395-401 (492)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-51 Score=449.50 Aligned_cols=428 Identities=32% Similarity=0.508 Sum_probs=287.0
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+++.+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|+++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCEEECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 34555555555555555555 56666666666665555555556666666666666666655556666666666666666
Q ss_pred cCcCcccCChhhhcccCCee--------ccccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCc
Q 037195 81 GNQLIGSIPSSIFELLNLTF--------AISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQG 149 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~ 149 (502)
+|.+.+.+|..++.+.+|+. .+.+|..+..+ ++|++|++++|.+++..+ ..+++|++|++++|.+.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL--KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC--CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 66665556666655555554 23455555555 666666666666554433 245566666666666665
Q ss_pred cCCCC---CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCC--------
Q 037195 150 SLLNL---PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQD-------- 217 (502)
Q Consensus 150 ~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~-------- 217 (502)
..+.. +++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..++... |+.+++++|.+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 55432 55666666666666666666666666677777776666666665555544 6777776655431
Q ss_pred --------CCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEE
Q 037195 218 --------MRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLT 289 (502)
Q Consensus 218 --------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 289 (502)
+..+.+.+.+|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 122334445555555556666666666666655555566666666666666666655555555566666666
Q ss_pred ccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCC
Q 037195 290 LRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLK 369 (502)
Q Consensus 290 l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 369 (502)
+++|.+.+..|..+ ..++|+.|++++|++.+..|..+ ..+++|++|+|++|++.+.+|..++.+++|+
T Consensus 459 L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 459 LARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL---------GSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred CcCceeeeecCccc---ccccceEEECcCCccCCccChhh---------hhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 66666655555433 23566667777777666666543 4589999999999999999999999999999
Q ss_pred EEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc-----------cCCCCCCCccCCCcccCCCC
Q 037195 370 SLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV-----------RPGGPQFNTFGNDSYSGNSG 438 (502)
Q Consensus 370 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~-----------~~~~~~~~~~~~~~~~~n~~ 438 (502)
.|+|++|.+++.+|..+..+++|+.||+++|++++.+|..+..++.|+. +|...++.++...++.||+.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence 9999999999999999999999999999999999999999988877764 67777888888889999999
Q ss_pred CCCCC
Q 037195 439 LCGFP 443 (502)
Q Consensus 439 lc~~~ 443 (502)
+|+.+
T Consensus 607 lc~~~ 611 (968)
T PLN00113 607 LCGGD 611 (968)
T ss_pred ccCCc
Confidence 99854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-46 Score=410.64 Aligned_cols=402 Identities=34% Similarity=0.528 Sum_probs=242.6
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+.+.+|..++..+++|++|++++|.+++.+|. +.+++|++|++++|.+.+..|..++++++|++|+++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECc
Confidence 577888888888888877765677777777777777655543 345556666666665555555555555556666665
Q ss_pred cCcCcccCChhhhcccCCee--------ccccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCc
Q 037195 81 GNQLIGSIPSSIFELLNLTF--------AISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQG 149 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~ 149 (502)
+|.+.+.+|..++++.+|+. .+.+|..++.+ ++|++|++++|.+++..+ ..+++|++|++++|.+.+
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 55555555555555555544 12344444444 555555555555544333 234455555555555444
Q ss_pred cCCCC---CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccC---------
Q 037195 150 SLLNL---PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQ--------- 216 (502)
Q Consensus 150 ~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~--------- 216 (502)
..+.. +++|+.|++++|.+++..|..+.++++|+.|++++|.+.+.++..+.... |+.|++++|.+.
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 33322 34444444444444444444444444444444444444444444333332 444444444332
Q ss_pred -------CCCCCeeeccCccchhcCCCccEEeccCCccccCCCccc------------------------cCCCCCcEEE
Q 037195 217 -------DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSL------------------------VNCRHLEVID 265 (502)
Q Consensus 217 -------~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------------------~~l~~L~~L~ 265 (502)
++..+.+.+.+|..+..+.+|+.|++++|.+.+..|..+ ..+++|+.|+
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 012233334445555555555555555555554444444 4444555555
Q ss_pred ccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccC
Q 037195 266 VGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFA 345 (502)
Q Consensus 266 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~ 345 (502)
+++|.+.+..|..+..++.|+.|++++|.+.+.++..+ ..+++|+.|++++|++.+.+|..+ ..++|+
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~----------~~~~L~ 478 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF----------GSKRLE 478 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc----------ccccce
Confidence 55555544444445555555555555555554444333 335555555555555555554432 257899
Q ss_pred eeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc
Q 037195 346 TIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418 (502)
Q Consensus 346 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 418 (502)
.||+++|++++.+|..+..+++|+.|+|++|++++.+|..+..+++|++|++++|.+++.+|..+..++.|+.
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888875
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-37 Score=292.25 Aligned_cols=371 Identities=25% Similarity=0.257 Sum_probs=289.1
Q ss_pred CEEEecCCCCccc----CChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEE
Q 037195 2 TLRNLSSSYFMGS----IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYL 77 (502)
Q Consensus 2 ~~L~Ls~n~~~~~----ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 77 (502)
+.||.+.+.+... ++..++ +.-++|++++|.++.+.+..|.++++|+.+++.+|.++ .+|.......+|+.|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp---~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLP---SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred eeeecCccccccccccccCCcCc---cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 3567777765421 222222 35567999999998887788999999999999999988 788876777789999
Q ss_pred EcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCC---CCCceEeCcCCcCCccC---
Q 037195 78 GLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPW---KNLEYLHLDSNLLQGSL--- 151 (502)
Q Consensus 78 ~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~--- 151 (502)
+|.+|.|+..-.+++..+ +.|+.|||+.|.++.++...+ .++++|++++|.|+..-
T Consensus 131 ~L~~N~I~sv~se~L~~l------------------~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSAL------------------PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred eeeccccccccHHHHHhH------------------hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc
Confidence 999999885555666655 889999999999998887544 47889999998887432
Q ss_pred CCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccc-cccccEEEccCCccCCCCCCeeeccCccc
Q 037195 152 LNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLG-NSTLDTLDLGMNNFQDMRMNKFSGSLPQT 230 (502)
Q Consensus 152 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 230 (502)
+..+.+|..|.++.|+++...+..|.++++|+.|++..|++.-.-...+. ..+|+.+.+..|.+..+... .
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG--------~ 264 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG--------A 264 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc--------c
Confidence 22356888899999999977777888899999999999988754333333 33488888888877766544 3
Q ss_pred hhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCC
Q 037195 231 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPK 310 (502)
Q Consensus 231 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 310 (502)
|..+.++++|+|+.|++...-..++.+++.|+.|++++|.|....++....+++|++|+|+.|+++...+..+ ..+..
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~ 342 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQ 342 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH--HHHHH
Confidence 4456778889999998887777788888899999999998888778888888899999999999887777666 55788
Q ss_pred ccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccc---hhhhcCCCCCCEEeCcCCcCCCCCchhcc
Q 037195 311 LRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEI---LEVLGKLNSLKSLNISHNNLTGGIPSSLR 387 (502)
Q Consensus 311 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 387 (502)
|++|+|++|.+...-.. .+..+.+|++|||++|.+...+ ...|.++++|+.|++.+|++....-.+|.
T Consensus 343 Le~LnLs~Nsi~~l~e~---------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs 413 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEG---------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS 413 (873)
T ss_pred hhhhcccccchHHHHhh---------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhc
Confidence 88999999887643222 2345899999999999987543 34577899999999999999855557899
Q ss_pred CCCCCCEEeCCCCCCCccCchhcccC
Q 037195 388 NLTELESLDLSSNKLAGRIPTQLASL 413 (502)
Q Consensus 388 ~l~~L~~L~ls~n~l~~~~p~~~~~l 413 (502)
.+++|++|||.+|.|...-|.+|..+
T Consensus 414 gl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 414 GLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred cCcccceecCCCCcceeecccccccc
Confidence 99999999999999998888888766
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=278.75 Aligned_cols=383 Identities=23% Similarity=0.270 Sum_probs=319.3
Q ss_pred CCcEEEccCCcccccCCcCCCCC--CCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecc
Q 037195 25 QLAYLDLSFNSFSGHIPSSFSNL--QQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAI 102 (502)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~ 102 (502)
.-+.|+.+++.+.......+..+ ..-+.||+++|++....+..|.++++|+.+++..|.++ .+|...+..
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s------- 124 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES------- 124 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc-------
Confidence 45678888888764322223332 23566999999999899999999999999999999998 888766554
Q ss_pred ccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCccCCCC---CCCccEEEccCCcCcccCCccc
Q 037195 103 SVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQGSLLNL---PPHMREFSISRNNLTGEIPSSF 176 (502)
Q Consensus 103 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~l 176 (502)
.+|++|+|.+|.++.+.. ..++.|+.||++.|.|+...... -.++++|++++|.|+......|
T Consensus 125 -----------ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 125 -----------GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred -----------cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 789999999999998876 35679999999999988543332 4679999999999998888899
Q ss_pred cCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccc
Q 037195 177 CNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSL 255 (502)
Q Consensus 177 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 255 (502)
.++.+|..|.++.|+++..++..+.... |+.|++..|++..+..- .|.++.+|+.+.+..|.+...-...|
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l--------tFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL--------TFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh--------hhcCchhhhhhhhhhcCcccccCcce
Confidence 9999999999999999999999998555 99999999988765443 45567889999999999998888899
Q ss_pred cCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCch
Q 037195 256 VNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDI 335 (502)
Q Consensus 256 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 335 (502)
..+.++++|+|..|++...-..++.++.+|+.|+++.|.+.......| ...++|+.|+|++|+++..-+..+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf------ 337 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGSF------ 337 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccccCChhHH------
Confidence 999999999999999998888999999999999999999988777766 558899999999999997766554
Q ss_pred hHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCch---hccCCCCCCEEeCCCCCCCccCchhccc
Q 037195 336 QMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPS---SLRNLTELESLDLSSNKLAGRIPTQLAS 412 (502)
Q Consensus 336 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~ls~n~l~~~~p~~~~~ 412 (502)
..+..|++|.|++|.++......|..+++|++|||++|.++..+.+ .|..+++|+.|++.+|++......+|..
T Consensus 338 ---~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 338 ---RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred ---HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 5589999999999999988888899999999999999999876653 5788999999999999999777778999
Q ss_pred CCCCCc-cCCCCCCCccCCCccc----------CCCCCCCCCCC
Q 037195 413 LNYLSV-RPGGPQFNTFGNDSYS----------GNSGLCGFPLS 445 (502)
Q Consensus 413 l~~L~~-~~~~~~~~~~~~~~~~----------~n~~lc~~~~~ 445 (502)
+..|.. ..+++.+.++....|. ....+|+|.+.
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred CcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 988876 3455555544444332 34567887653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2e-34 Score=260.56 Aligned_cols=380 Identities=26% Similarity=0.361 Sum_probs=247.9
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+.++++.+|.++ .+|++++ .+..++.++.++|++. .+|..++.+.+|+.++.++|.+. .+|+.++.+..|+.++..
T Consensus 70 l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred eeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 356677777765 5666666 5666677777777766 66666777777777777777666 566666666666666666
Q ss_pred cCcCcccCChhhhcccCCee------------------------------ccccchhhhhhccCcccEEECCCCcCcccC
Q 037195 81 GNQLIGSIPSSIFELLNLTF------------------------------AISVAAWMWDIGVHTLIYLELSRNFLTNID 130 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 130 (502)
+|+++ +.|.+++.+.++.. .+.+|+.++.+ .+|.-|++..|.+..++
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l--~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGL--ESLELLYLRRNKIRFLP 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcch--hhhHHHHhhhcccccCC
Confidence 66666 56666655544433 45566666655 66666666666666666
Q ss_pred CC-CCCCCceEeCcCCcCCccCC---CCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccccc
Q 037195 131 HL-PWKNLEYLHLDSNLLQGSLL---NLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLD 206 (502)
Q Consensus 131 ~~-~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~ 206 (502)
.+ .+..|++++++.|++.-... ..++++..|++++|+++ +.|..++-+++|+.||+|+|.+++.+ -.+++.+|+
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp-~sLgnlhL~ 300 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLP-YSLGNLHLK 300 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCC-cccccceee
Confidence 53 45667777777776653322 23678999999999999 78899999999999999999998654 456666899
Q ss_pred EEEccCCccCCCCCCeee-----------------------c------cCcc----chhcCCCccEEeccCCccccCCCc
Q 037195 207 TLDLGMNNFQDMRMNKFS-----------------------G------SLPQ----TFAKSCVLVSLNLNGNRLEGPLPP 253 (502)
Q Consensus 207 ~L~l~~n~~~~~~~~~~~-----------------------~------~~~~----~~~~l~~L~~L~l~~n~l~~~~~~ 253 (502)
.|.+.+|.+..+....++ | ..|. ......+.+.|++++-+++....+
T Consensus 301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE 380 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE 380 (565)
T ss_pred ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence 999999987511110000 0 0000 011122344555555555422222
Q ss_pred cccCC--CCCcEEEccCCccC-----------------------ccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 037195 254 SLVNC--RHLEVIDVGNNQIN-----------------------DTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPF 308 (502)
Q Consensus 254 ~l~~l--~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 308 (502)
.|..- .-.+..+++.|++. +-.|..+..+++|..|++++|.+...+. .+ ..+
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-e~--~~l 457 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-EM--GSL 457 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-hh--hhh
Confidence 22111 11444444444432 3345556677888888888887764433 33 346
Q ss_pred CCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccC
Q 037195 309 PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRN 388 (502)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 388 (502)
..|+.++++.|+|. .+|... ..+..++.+-.++|++....+..+.+|.+|..|||.+|.+. .+|..+++
T Consensus 458 v~Lq~LnlS~NrFr-~lP~~~---------y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgn 526 (565)
T KOG0472|consen 458 VRLQTLNLSFNRFR-MLPECL---------YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGN 526 (565)
T ss_pred hhhheecccccccc-cchHHH---------hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcc
Confidence 67888888888776 333322 22455666666678887666666888888999999988887 78888888
Q ss_pred CCCCCEEeCCCCCCC
Q 037195 389 LTELESLDLSSNKLA 403 (502)
Q Consensus 389 l~~L~~L~ls~n~l~ 403 (502)
+.+|++|++++|+++
T Consensus 527 mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 527 MTNLRHLELDGNPFR 541 (565)
T ss_pred ccceeEEEecCCccC
Confidence 999999999999888
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-32 Score=261.08 Aligned_cols=357 Identities=24% Similarity=0.344 Sum_probs=263.3
Q ss_pred CEEEecCCCCc-ccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 2 TLRNLSSSYFM-GSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 2 ~~L~Ls~n~~~-~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|=+|+++|.|+ +..|.++. .++.++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+++.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~-qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVE-QMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ecccccCCcCCCCcCchhHH-HhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 45799999999 56899998 7999999999999987 88999999999999999999987 455668899999999999
Q ss_pred cCcCc-ccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCC--CCCCCceEeCcCCcCCccCCCC---
Q 037195 81 GNQLI-GSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHL--PWKNLEYLHLDSNLLQGSLLNL--- 154 (502)
Q Consensus 81 ~n~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~--- 154 (502)
+|++. ..+|..++.+ ..|+.|||++|++..++.. .-.++-.|++++|+|...+-..
T Consensus 87 ~N~LKnsGiP~diF~l------------------~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRL------------------KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred ccccccCCCCchhccc------------------ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence 99986 3588888887 8899999999999988762 4467778888888877543332
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccc-ccccEEEccCCccCCCCCCeeeccCccchhc
Q 037195 155 PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGN-STLDTLDLGMNNFQDMRMNKFSGSLPQTFAK 233 (502)
Q Consensus 155 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 233 (502)
++.|-.|++++|++. .+|..+..+..|+.|++++|.+.---...+-. .+|+.|.+++.+-+- ..+|.++..
T Consensus 149 LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-------~N~Ptsld~ 220 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-------DNIPTSLDD 220 (1255)
T ss_pred hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------hcCCCchhh
Confidence 455667777777776 56666777777777777777664321111212 226666665543321 146677777
Q ss_pred CCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccE
Q 037195 234 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRI 313 (502)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 313 (502)
+.+|..++++.|.+. .+|+.+..+++|+.|+|++|+|+.. ........+|++|+++.|+++.. |... ..+++|+.
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~L-P~av--cKL~kL~k 295 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVL-PDAV--CKLTKLTK 295 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhccc-hHHH--hhhHHHHH
Confidence 777788888887777 6777777778888888888877543 23344556777788888877643 3333 55777777
Q ss_pred EEccCccCC-CCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 037195 314 IDLSYNRFT-GVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 392 (502)
Q Consensus 314 L~L~~n~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 392 (502)
|.+.+|+++ .-+|+.+ +.+.+|+.+..++|++. ..|+.+..|..|+.|.|++|++- .+|+++.-++.|
T Consensus 296 Ly~n~NkL~FeGiPSGI---------GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGI---------GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred HHhccCcccccCCccch---------hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 777777765 2345443 44777777888888776 67788888888888888888877 778888778888
Q ss_pred CEEeCCCCCCC
Q 037195 393 ESLDLSSNKLA 403 (502)
Q Consensus 393 ~~L~ls~n~l~ 403 (502)
+.||+..|+-.
T Consensus 365 ~vLDlreNpnL 375 (1255)
T KOG0444|consen 365 KVLDLRENPNL 375 (1255)
T ss_pred ceeeccCCcCc
Confidence 88888887654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.5e-32 Score=246.01 Aligned_cols=255 Identities=25% Similarity=0.369 Sum_probs=164.5
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
-+++++|.+. .+-+++- ++..|.+|++++|++. .+|.+++.+..++.++.++|++. .+|++++.+.+|+.++.+.|
T Consensus 49 ~lils~N~l~-~l~~dl~-nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 49 KLILSHNDLE-VLREDLK-NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhccCchh-hccHhhh-cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 4667777775 4445565 7888888888888887 67777888888888888888887 78888888888888888888
Q ss_pred cCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC--CCCCCCceEeCcCCcCCccCCCC--CCCc
Q 037195 83 QLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH--LPWKNLEYLHLDSNLLQGSLLNL--PPHM 158 (502)
Q Consensus 83 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~--~~~L 158 (502)
.+. ++|++++.+ ..++.++..+|+++..+. ..+.++..+++.+|++....+.. .+.|
T Consensus 125 ~~~-el~~~i~~~------------------~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 125 ELK-ELPDSIGRL------------------LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRL 185 (565)
T ss_pred cee-ecCchHHHH------------------hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHH
Confidence 887 788888877 556666666666666655 34556666666666666544443 5566
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchh-cCCCc
Q 037195 159 REFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFA-KSCVL 237 (502)
Q Consensus 159 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~l~~L 237 (502)
++++...|.+. .+|..++.+.+|..|++..|++...+ ++-+...|..++++.|+++ .+|...+ .+..+
T Consensus 186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~---------~lpae~~~~L~~l 254 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE---------MLPAEHLKHLNSL 254 (565)
T ss_pred Hhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH---------hhHHHHhcccccc
Confidence 66666666555 55666666666666666666665433 2222222666666555544 2233322 45556
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNR 294 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 294 (502)
..||+..|++. ..|..+..+.+|+.||+++|.+++ .|..++++ .|+.|.+.+|.
T Consensus 255 ~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 255 LVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCc
Confidence 66666666665 445555555666666666666643 34445555 56666666655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=5.4e-31 Score=250.74 Aligned_cols=353 Identities=27% Similarity=0.358 Sum_probs=288.2
Q ss_pred CCCCCcEEEccCCcccc-cCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCee
Q 037195 22 DITQLAYLDLSFNSFSG-HIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTF 100 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 100 (502)
-++-.+-.|+++|.++| ..|.....|++++-|.|...++. .+|+.++.+.+|++|.+.+|++. ++-.++..+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~L----- 77 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDL----- 77 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccc-----
Confidence 35667788999999984 78888999999999999999888 78999999999999999999987 555555554
Q ss_pred ccccchhhhhhccCcccEEECCCCcCccc--CC--CCCCCCceEeCcCCcCCccCCCC--CCCccEEEccCCcCcccCCc
Q 037195 101 AISVAAWMWDIGVHTLIYLELSRNFLTNI--DH--LPWKNLEYLHLDSNLLQGSLLNL--PPHMREFSISRNNLTGEIPS 174 (502)
Q Consensus 101 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~--~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~ 174 (502)
+.|+.+.+..|++... +. +.+..|..|+++.|++...+-.. ..++-.|++++|.|..+.-.
T Consensus 78 -------------p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 78 -------------PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred -------------hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCch
Confidence 8899999999988654 33 56789999999999988644322 67788999999999854444
Q ss_pred cccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCcc-ccCCCc
Q 037195 175 SFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRL-EGPLPP 253 (502)
Q Consensus 175 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~ 253 (502)
.+-+++.|-.||+|+|++...+|..-....|++|.+++|.+....- ..+..+++|+.|.+++.+- ...+|.
T Consensus 145 lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL--------rQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL--------RQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH--------hcCccchhhhhhhcccccchhhcCCC
Confidence 5678999999999999998777766555559999999887653221 1223456788888887643 346888
Q ss_pred cccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCC
Q 037195 254 SLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGN 333 (502)
Q Consensus 254 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 333 (502)
++..+.+|..+|++.|.+ ...|+.+.++++|+.|+|++|+++..-... ..+.+|+.|+++.|+++ .+|..+++
T Consensus 217 sld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQLt-~LP~avcK-- 289 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQLT-VLPDAVCK-- 289 (1255)
T ss_pred chhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccchhc-cchHHHhh--
Confidence 899999999999999998 567888999999999999999998654332 33578999999999998 56766654
Q ss_pred chhHHHHhcccCeeeccCCcccc-cchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhccc
Q 037195 334 DIQMERILTTFATIDLSSNRFQG-EILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 412 (502)
Q Consensus 334 ~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~ 412 (502)
+++|+.|.+.+|+++- -+|..+|.+..|+.+..++|.+. ..|+.+..+..|+.|.|+.|++. .+|+.+.-
T Consensus 290 -------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl 360 (1255)
T KOG0444|consen 290 -------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL 360 (1255)
T ss_pred -------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh
Confidence 8999999999999884 38899999999999999999997 99999999999999999999998 78988877
Q ss_pred CCCCCc
Q 037195 413 LNYLSV 418 (502)
Q Consensus 413 l~~L~~ 418 (502)
++.|.+
T Consensus 361 L~~l~v 366 (1255)
T KOG0444|consen 361 LPDLKV 366 (1255)
T ss_pred cCCcce
Confidence 766654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-30 Score=258.87 Aligned_cols=371 Identities=27% Similarity=0.348 Sum_probs=246.9
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|.+||+++|.+. ..|..+. .+++|+.|+++.|.|. ..|.+..++++|++++|.+|.+. .+|..+..+.+|++|+++
T Consensus 47 L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccc-cCCchhh-hHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 568999999985 7888888 7999999999999998 77888999999999999999888 899999999999999999
Q ss_pred cCcCcccCChhhhcccCCee---------------------------ccccchhhhhhccCcccE-EECCCCcCcccCCC
Q 037195 81 GNQLIGSIPSSIFELLNLTF---------------------------AISVAAWMWDIGVHTLIY-LELSRNFLTNIDHL 132 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~---------------------------~~~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~ 132 (502)
.|.+. .+|.-+..+..+.. .+.++..+ ..+++ |+|.+|.+..+...
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~~~dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEMEVLDLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch-----hhhheeeecccchhhhhhhh
Confidence 99987 77776655433222 12222222 23333 66666666533333
Q ss_pred CCCCCceEe--------------------CcCCcCCccCCCC-CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCc
Q 037195 133 PWKNLEYLH--------------------LDSNLLQGSLLNL-PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNS 191 (502)
Q Consensus 133 ~~~~L~~L~--------------------l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 191 (502)
.+.+|+.+. .+.|.++...... +.+|+.++++.|.++ .+|+|++.+.+|+.+++.+|+
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 333333333 3333333222222 445555666665555 334555666666666666665
Q ss_pred CccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCC-CcEEEccCCc
Q 037195 192 LSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH-LEVIDVGNNQ 270 (502)
Q Consensus 192 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~ 270 (502)
++..+...+....|+.+....|.++. +|......+.|++|++..|.+....+..+..... ++.++.+.|+
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~y---------ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEY---------IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhh---------CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 54444444444445555554444442 3444455566666666666665322222222222 5555555555
Q ss_pred cCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeecc
Q 037195 271 INDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLS 350 (502)
Q Consensus 271 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 350 (502)
+.......=..++.|+.|++.+|.++...-..+ ..+++|+.|+|++|++... |.. ....++.|++|+||
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~~f-pas--------~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLNSF-PAS--------KLRKLEELEELNLS 415 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeecccccccC-CHH--------HHhchHHhHHHhcc
Confidence 543322222345678888999999886543333 5578999999999988743 332 23458899999999
Q ss_pred CCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCcc
Q 037195 351 SNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++..
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 99999 56788889999999999999998 777 788999999999999999753
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=4.5e-28 Score=240.80 Aligned_cols=388 Identities=28% Similarity=0.324 Sum_probs=277.0
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCC-------
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTR------- 73 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~------- 73 (502)
|++|+++.|.+. .+|.+.. ++++|++|+|.+|.+. .+|.++..+++|++|++++|.+. ..|..+..+..
T Consensus 70 L~~ln~s~n~i~-~vp~s~~-~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 70 LRQLNLSRNYIR-SVPSSCS-NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HhhcccchhhHh-hCchhhh-hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhh
Confidence 578899999886 7788888 8999999999999887 88999999999999999999887 45533332222
Q ss_pred ------------CCEEEcccCcCcccCChhhhcccC-Ce--eccccchhhhhh------------------ccCcccEEE
Q 037195 74 ------------LSYLGLGGNQLIGSIPSSIFELLN-LT--FAISVAAWMWDI------------------GVHTLIYLE 120 (502)
Q Consensus 74 ------------L~~L~L~~n~l~~~~p~~~~~l~~-L~--~~~~~~~~~~~~------------------~~~~L~~L~ 120 (502)
.+.+++..|.+.+.++.++..+.. +. .....-..+..+ ..++++.|+
T Consensus 146 ~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~ 225 (1081)
T KOG0618|consen 146 NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALY 225 (1081)
T ss_pred cchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheee
Confidence 444555555555555555555543 10 000000011111 124555555
Q ss_pred CCCCcCcccCCC-CCCCCceEeCcCCcCCccCCCC---CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccc
Q 037195 121 LSRNFLTNIDHL-PWKNLEYLHLDSNLLQGSLLNL---PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQI 196 (502)
Q Consensus 121 l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 196 (502)
.+.|.++..... .-.+|+.++++.|.+++.. .+ +.+|+.+....|.++ .+|..+....+|+.+++..|.+...+
T Consensus 226 a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip 303 (1081)
T KOG0618|consen 226 ADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP 303 (1081)
T ss_pred eccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence 555555533332 2358999999999988765 44 899999999999996 67888888899999999999998655
Q ss_pred ccccccccccEEEccCCccCCCCCCeeeccCccchhcCC-CccEEeccCCccccCCCc-cccCCCCCcEEEccCCccCcc
Q 037195 197 LQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC-VLVSLNLNGNRLEGPLPP-SLVNCRHLEVIDVGNNQINDT 274 (502)
Q Consensus 197 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~ 274 (502)
+..-+...|+.|++..|.+.++..+.+. ... .+..++.+.|++.. .|. .=...+.|+.|.+.+|.+++.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~--------v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLA--------VLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHh--------hhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCccccc
Confidence 5444455599999999888765542222 111 25666667777663 331 122456799999999999998
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcc
Q 037195 275 FPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRF 354 (502)
Q Consensus 275 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 354 (502)
....+.++++|+.|+|++|++...+...+ ..++.|++|+|++|+++ .+|... ..+..|++|...+|++
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~--~kle~LeeL~LSGNkL~-~Lp~tv---------a~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKL--RKLEELEELNLSGNKLT-TLPDTV---------ANLGRLHTLRAHSNQL 442 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHH--hchHHhHHHhcccchhh-hhhHHH---------HhhhhhHHHhhcCCce
Confidence 88889999999999999999986665555 67899999999999998 444444 3488999999999999
Q ss_pred cccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCC
Q 037195 355 QGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 417 (502)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 417 (502)
.. .| .+..++.|+.+|++.|.++...-..-...++|++||+++|.-...--..+..++++.
T Consensus 443 ~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 443 LS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred ee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhh
Confidence 84 45 788999999999999999854333322338999999999985333333444444443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.4e-22 Score=221.43 Aligned_cols=336 Identities=21% Similarity=0.227 Sum_probs=243.9
Q ss_pred CChhhhhCCCCCcEEEccCCc------ccccCCcCCCCCC-CCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCccc
Q 037195 15 IPASLGNDITQLAYLDLSFNS------FSGHIPSSFSNLQ-QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGS 87 (502)
Q Consensus 15 ip~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 87 (502)
+....++.+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|+.|++.++++. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 344445588899999886653 2334666676664 5899999888876 677776 5788999999988877 6
Q ss_pred CChhhhcccCCeeccccchhhhhhccCcccEEECCCCc-CcccCC-CCCCCCceEeCcCCcCCccCCCC---CCCccEEE
Q 037195 88 IPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF-LTNIDH-LPWKNLEYLHLDSNLLQGSLLNL---PPHMREFS 162 (502)
Q Consensus 88 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~ 162 (502)
++..+..+ ++|+.|+++++. +..++. ..+++|+.|++++|......|.. +++|+.|+
T Consensus 626 L~~~~~~l------------------~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 626 LWDGVHSL------------------TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cccccccC------------------CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 77766655 888899998764 444443 35678889999887655555543 67888899
Q ss_pred ccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEec
Q 037195 163 ISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNL 242 (502)
Q Consensus 163 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (502)
+++|.....+|..+ ++++|+.|++++|.....++... ..|+.|++++|.++.+ |..+ .+++|++|++
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~l---------P~~~-~l~~L~~L~l 754 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEEF---------PSNL-RLENLDELIL 754 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccccc---------cccc-cccccccccc
Confidence 98876555666655 67888999998886555544331 2388888887776543 3322 4566777777
Q ss_pred cCCccc-------cCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEE
Q 037195 243 NGNRLE-------GPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIID 315 (502)
Q Consensus 243 ~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 315 (502)
.++... ...+......++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|+
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~ 831 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLD 831 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEE
Confidence 664321 1111122345789999999998777888889999999999999987555555443 478999999
Q ss_pred ccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCC-cCCCCCchhccCCCCCCE
Q 037195 316 LSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN-NLTGGIPSSLRNLTELES 394 (502)
Q Consensus 316 L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~ 394 (502)
+++|.....+|. ..++|+.|+|++|.++ .+|..+..+++|+.|++++| ++. .+|..+..+++|+.
T Consensus 832 Ls~c~~L~~~p~------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 832 LSGCSRLRTFPD------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLET 897 (1153)
T ss_pred CCCCCccccccc------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCe
Confidence 999876555543 2578999999999998 57888999999999999985 555 67878888999999
Q ss_pred EeCCCCC
Q 037195 395 LDLSSNK 401 (502)
Q Consensus 395 L~ls~n~ 401 (502)
+++++|.
T Consensus 898 L~l~~C~ 904 (1153)
T PLN03210 898 VDFSDCG 904 (1153)
T ss_pred eecCCCc
Confidence 9999886
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.3e-21 Score=215.67 Aligned_cols=333 Identities=19% Similarity=0.207 Sum_probs=213.8
Q ss_pred CCEEEecCCC------CcccCChhhhhCC-CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCC
Q 037195 1 MTLRNLSSSY------FMGSIPASLGNDI-TQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTR 73 (502)
Q Consensus 1 l~~L~Ls~n~------~~~~ip~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 73 (502)
|+.|.+.++. +...+|..+. .+ ++|+.|++.++.+. .+|..| ...+|++|++++|++. .++..+..+++
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~~~-~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~ 635 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEGFD-YLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTG 635 (1153)
T ss_pred ccEEEEecccccccccceeecCcchh-hcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCC
Confidence 4556665442 2234666665 34 45888888887776 666666 4677888888888776 56677777888
Q ss_pred CCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCc-CcccCC--CCCCCCceEeCcCCcCCcc
Q 037195 74 LSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF-LTNIDH--LPWKNLEYLHLDSNLLQGS 150 (502)
Q Consensus 74 L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~n~l~~~ 150 (502)
|++|+|+++...+.+|. +..+ ++|++|++++|. +..++. ..+++|+.|++++|.....
T Consensus 636 Lk~L~Ls~~~~l~~ip~-ls~l------------------~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPD-LSMA------------------TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred CCEEECCCCCCcCcCCc-cccC------------------CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 88888877654445653 4433 677777777654 333332 3456777777776654444
Q ss_pred CCCC--CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCc
Q 037195 151 LLNL--PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLP 228 (502)
Q Consensus 151 ~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 228 (502)
.|.. +++|+.|++++|......|.. ..+|+.|++++|.+.. +|..+....|+.|.+..+....+.. .+....+
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~ 771 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE-RVQPLTP 771 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccc-cccccch
Confidence 4432 567777777776544444432 3456777777776653 3333333336666665433221110 1111112
Q ss_pred cchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 037195 229 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPF 308 (502)
Q Consensus 229 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 308 (502)
......++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|......+.. .
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----~ 845 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----S 845 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----c
Confidence 223345678899999888777788888889999999998886545666655 6888999999988654444322 4
Q ss_pred CCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCc
Q 037195 309 PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNN 377 (502)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 377 (502)
++|+.|++++|.+. .+|.++ ..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCCCCCc-cChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 67889999998887 355543 348889999998865444567777788888888888874
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=4.2e-22 Score=204.29 Aligned_cols=146 Identities=28% Similarity=0.369 Sum_probs=95.2
Q ss_pred ccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 237 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
|+.|++++|.+++ +|.. ..+|+.|++++|++.. +|.. ..+|+.|++++|.+... |.. ..+|+.|++
T Consensus 324 L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdL 389 (788)
T PRK15387 324 LCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIV 389 (788)
T ss_pred ccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC-ccc-----ccccceEEe
Confidence 5555566666553 3321 1356677777776654 2321 24566677777776643 211 246777777
Q ss_pred cCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 037195 317 SYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396 (502)
Q Consensus 317 ~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 396 (502)
++|++++ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 390 s~N~Lt~-LP~l------------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 390 SGNRLTS-LPVL------------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred cCCcccC-CCCc------------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 7777764 3321 3567888888888874 4443 246788888888888 7888888888888999
Q ss_pred CCCCCCCccCchhcccCC
Q 037195 397 LSSNKLAGRIPTQLASLN 414 (502)
Q Consensus 397 ls~n~l~~~~p~~~~~l~ 414 (502)
+++|++++.+|..+..+.
T Consensus 452 Ls~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 452 LEGNPLSERTLQALREIT 469 (788)
T ss_pred CCCCCCCchHHHHHHHHh
Confidence 999998888887775543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=9.8e-22 Score=201.63 Aligned_cols=266 Identities=24% Similarity=0.279 Sum_probs=153.4
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 25 QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++ .+|...
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~lp------------ 261 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLP------------ 261 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCcc------------
Confidence 3445666666665 4555443 25666666666655 3443 2355666666666655 344211
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCE
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRF 184 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 184 (502)
++|++|++++|.++.++. ...+|+.|++++|.++.. |..+++ |+.
T Consensus 262 ---------~sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~L-P~~p~~------------------------L~~ 306 (788)
T PRK15387 262 ---------PGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSL-PVLPPG------------------------LQE 306 (788)
T ss_pred ---------cccceeeccCCchhhhhh-chhhcCEEECcCCccccc-cccccc------------------------cce
Confidence 455555555555544332 113344444444444321 112233 444
Q ss_pred EECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEE
Q 037195 185 FDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVI 264 (502)
Q Consensus 185 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (502)
|++++|.+++... . ...|+.|++++|.++.++ .. ..+|+.|++++|++++ +|.. .++|+.|
T Consensus 307 LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~~LP---------~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L 367 (788)
T PRK15387 307 LSVSDNQLASLPA-L--PSELCKLWAYNNQLTSLP---------TL---PSGLQELSVSDNQLAS-LPTL---PSELYKL 367 (788)
T ss_pred eECCCCccccCCC-C--cccccccccccCcccccc---------cc---ccccceEecCCCccCC-CCCC---Cccccee
Confidence 4444444443211 0 011444555444443222 10 1357777777777773 4432 2467777
Q ss_pred EccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhccc
Q 037195 265 DVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTF 344 (502)
Q Consensus 265 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L 344 (502)
++++|.+.. +|.. ..+|+.|++++|.+++.+. . .++|+.|++++|++++ +|.. +.+|
T Consensus 368 ~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~-l-----~s~L~~LdLS~N~Lss-IP~l------------~~~L 424 (788)
T PRK15387 368 WAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV-L-----PSELKELMVSGNRLTS-LPML------------PSGL 424 (788)
T ss_pred hhhcccccc-Cccc---ccccceEEecCCcccCCCC-c-----ccCCCEEEccCCcCCC-CCcc------------hhhh
Confidence 888887764 4432 3568888888888875332 1 3578888999988875 4431 3467
Q ss_pred CeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccC
Q 037195 345 ATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRN 388 (502)
Q Consensus 345 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 388 (502)
+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 88999999998 57888889999999999999999888776643
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2e-24 Score=195.72 Aligned_cols=284 Identities=22% Similarity=0.229 Sum_probs=158.0
Q ss_pred cCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc-CcCcccCC-hh
Q 037195 14 SIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG-NQLIGSIP-SS 91 (502)
Q Consensus 14 ~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p-~~ 91 (502)
.||..++ +.-..++|..|.|+.+.+.+|..+++||.|||++|+|+.+.|++|.++++|..|-+.+ |+|+ .+| ..
T Consensus 60 eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGA 135 (498)
T ss_pred cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence 6777766 4567788888888877777788888888888888888888888888888888877766 7787 555 45
Q ss_pred hhcccCCee-------ccccc-hhhhhhccCcccEEECCCCcCcccCCCC---CCCCceEeCcCCcCCccCCCCCCCccE
Q 037195 92 IFELLNLTF-------AISVA-AWMWDIGVHTLIYLELSRNFLTNIDHLP---WKNLEYLHLDSNLLQGSLLNLPPHMRE 160 (502)
Q Consensus 92 ~~~l~~L~~-------~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~ 160 (502)
|++|.+++. ...++ ..+.++ +++..|.+.+|.+..+.... +..++.+++..|.+... .+|+.
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL--~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~w 208 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDL--PSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPW 208 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHh--hhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccch
Confidence 566655544 11222 234555 77777777777776666533 34444555544432100 01110
Q ss_pred EEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEE--EccCCccCCCCCCeeeccCc-cchhcCCCc
Q 037195 161 FSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTL--DLGMNNFQDMRMNKFSGSLP-QTFAKSCVL 237 (502)
Q Consensus 161 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L--~l~~n~~~~~~~~~~~~~~~-~~~~~l~~L 237 (502)
+.= +....+..++..+...-..+.+.++....+..+... ++.+ .++ ..+...+..| ..|..+++|
T Consensus 209 la~----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~-------~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 209 LAD----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLS-------SEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred hhh----HHhhchhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhc-------cccCcCCcChHHHHhhcccc
Confidence 000 000111112222222222222222222222211111 0000 000 0011111122 235666667
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
++|++++|+++++-+.+|.....+++|.|..|++.......|.++..|+.|+|.+|+++...+..| ..+.+|.+|++-
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLL 354 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehc
Confidence 777777777766666666666677777777776665555666666667777777777666655555 456666666666
Q ss_pred CccCC
Q 037195 318 YNRFT 322 (502)
Q Consensus 318 ~n~l~ 322 (502)
.|.+.
T Consensus 355 ~Np~~ 359 (498)
T KOG4237|consen 355 SNPFN 359 (498)
T ss_pred cCccc
Confidence 66553
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=3.8e-20 Score=191.19 Aligned_cols=140 Identities=27% Similarity=0.345 Sum_probs=78.4
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 25 QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
+...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~----------- 240 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP----------- 240 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh-----------
Confidence 4455666666655 3444332 35666666666665 3444332 35666666666665 4554332
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCE
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRF 184 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 184 (502)
++|+.|++++|.+..++..-..+|+.|++++|.+.......+++|+.|++++|.++. +|..+. ++|+.
T Consensus 241 ---------~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~ 308 (754)
T PRK15370 241 ---------DTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITH 308 (754)
T ss_pred ---------ccccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHH
Confidence 456666666666665544333456666666666664322234567777777777763 343332 35666
Q ss_pred EECCCCcCcc
Q 037195 185 FDSSNNSLSG 194 (502)
Q Consensus 185 L~l~~n~l~~ 194 (502)
|++++|.++.
T Consensus 309 L~Ls~N~Lt~ 318 (754)
T PRK15370 309 LNVQSNSLTA 318 (754)
T ss_pred HHhcCCcccc
Confidence 6666666653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1e-19 Score=188.08 Aligned_cols=182 Identities=27% Similarity=0.388 Sum_probs=82.8
Q ss_pred CcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCc
Q 037195 114 HTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLS 193 (502)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 193 (502)
+.++.|++++|.++.++...+.+|++|++++|.++......+++|+.|++++|.+. .+|..+. .+|+.|++++|.++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 33444444444444443333344555555555544322222445666666666665 4444443 35666666666665
Q ss_pred cccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCc
Q 037195 194 GQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIND 273 (502)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 273 (502)
. +|..+. ..|+.|++++|.++.++ ..+. ..|+.|++++|.++. +|..+ .++|+.|++++|.++.
T Consensus 276 ~-LP~~l~-~sL~~L~Ls~N~Lt~LP---------~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 276 C-LPENLP-EELRYLSVYDNSIRTLP---------AHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred c-cccccC-CCCcEEECCCCccccCc---------ccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc
Confidence 3 222211 12555555544443221 1111 235555555555552 23222 1345555555555543
Q ss_pred cCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCC
Q 037195 274 TFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFT 322 (502)
Q Consensus 274 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 322 (502)
+|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|+++
T Consensus 340 -LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 340 -LPASLP--PELQVLDVSKNQITV-LPETL----PPTITTLDVSRNALT 380 (754)
T ss_pred -CChhhc--CcccEEECCCCCCCc-CChhh----cCCcCEEECCCCcCC
Confidence 233221 455555555555542 22211 234555555555554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=5.5e-21 Score=173.54 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=94.9
Q ss_pred EEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhh
Q 037195 29 LDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWM 108 (502)
Q Consensus 29 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~ 108 (502)
.+-++-.++ .+|..+. +.-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+..-|.+|..+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL------------- 114 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL------------- 114 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh-------------
Confidence 334444454 4554332 256788999999998888999999999999999999997788888877
Q ss_pred hhhccCcccEEECCC-CcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEEC
Q 037195 109 WDIGVHTLIYLELSR-NFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDS 187 (502)
Q Consensus 109 ~~~~~~~L~~L~l~~-n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 187 (502)
+.+..|-+.+ |+++.++...|..| ..++.|.+.-|.+.....+.|..++++..|.+
T Consensus 115 -----~~l~~Lvlyg~NkI~~l~k~~F~gL------------------~slqrLllNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 115 -----ASLLSLVLYGNNKITDLPKGAFGGL------------------SSLQRLLLNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred -----HhhhHHHhhcCCchhhhhhhHhhhH------------------HHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence 5555555554 88888887544333 23344444445555455556666666666666
Q ss_pred CCCcCcccccccccccc-ccEEEccCCc
Q 037195 188 SNNSLSGQILQCLGNST-LDTLDLGMNN 214 (502)
Q Consensus 188 ~~n~l~~~~~~~~~~~~-L~~L~l~~n~ 214 (502)
.+|.+....-..+.... ++.+.+..|.
T Consensus 172 yDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 172 YDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cchhhhhhccccccchhccchHhhhcCc
Confidence 66665543333333333 5555554443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1e-18 Score=167.97 Aligned_cols=91 Identities=24% Similarity=0.308 Sum_probs=49.4
Q ss_pred CCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccc----cchhhhcCCCCCCEEeCcCCcCCCC--
Q 037195 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQG----EILEVLGKLNSLKSLNISHNNLTGG-- 381 (502)
Q Consensus 308 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-- 381 (502)
+++|++|++++|.+.+.....+.. .+....+.|++|++++|.+++ .+...+..+++|+.+++++|.++..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~----~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALAS----ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHH----HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 456666666666555322211110 000012567777777777652 2334455567777777777777643
Q ss_pred --CchhccCC-CCCCEEeCCCCCC
Q 037195 382 --IPSSLRNL-TELESLDLSSNKL 402 (502)
Q Consensus 382 --~p~~l~~l-~~L~~L~ls~n~l 402 (502)
....+... +.|+++++.+|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCCC
Confidence 23334334 5677777777653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.9e-18 Score=165.98 Aligned_cols=280 Identities=23% Similarity=0.218 Sum_probs=166.5
Q ss_pred EEEecCCCCccc-CChhhhhCCCCCcEEEccCCcccc----cCCcCCCCCCCCCEEeccCCcCCc------cCCcccCCC
Q 037195 3 LRNLSSSYFMGS-IPASLGNDITQLAYLDLSFNSFSG----HIPSSFSNLQQLRLLDLRYNNFVG------KIPDIFTNL 71 (502)
Q Consensus 3 ~L~Ls~n~~~~~-ip~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~l 71 (502)
.|+|..+.+++. .+..+. .++.|+.|+++++.++. .++..+...+++++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~-~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLP-KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHH-HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 578888888744 444444 78889999999998843 245556778889999999887762 234567788
Q ss_pred CCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC-------CCC-CCCceEeCc
Q 037195 72 TRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH-------LPW-KNLEYLHLD 143 (502)
Q Consensus 72 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~-~~L~~L~l~ 143 (502)
++|++|++++|.+.+..+..+..+.. . ++|++|++++|++++... ..+ ++|++|+++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~--------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLR--------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhc--------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 89999999999887655555555411 0 337788887777663211 122 445555555
Q ss_pred CCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccc----ccccc-cccccEEEccCCccCCC
Q 037195 144 SNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQI----LQCLG-NSTLDTLDLGMNNFQDM 218 (502)
Q Consensus 144 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~-~~~L~~L~l~~n~~~~~ 218 (502)
+|.+++... ...+..+..+++|++|++++|.+++.. +..+. ...|+.|++++|.+++.
T Consensus 146 ~n~l~~~~~-----------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 146 RNRLEGASC-----------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred CCcCCchHH-----------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 554442110 012223444455666666666555321 11111 12366666655554422
Q ss_pred CCCeeeccCccchhcCCCccEEeccCCccccCCCcccc-----CCCCCcEEEccCCccCc----cCCcccCCCCCCCEEE
Q 037195 219 RMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV-----NCRHLEVIDVGNNQIND----TFPHWLDVLPELQVLT 289 (502)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ 289 (502)
... .+...+..+++|++|++++|.+++.....+. ..+.|+.|++++|.+++ .+...+..+++|++++
T Consensus 209 ~~~----~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 209 GAS----ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred HHH----HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 211 2233455667788888888877642222221 23678888888888763 2233445567888888
Q ss_pred ccCCcCccc----CCCCCCCCCC-CCccEEEccCccC
Q 037195 290 LRSNRFRGP----IDDTKTRVPF-PKLRIIDLSYNRF 321 (502)
Q Consensus 290 l~~n~~~~~----~~~~~~~~~l-~~L~~L~L~~n~l 321 (502)
+++|.+... ..... ... +.|+.+++.+|.+
T Consensus 285 l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCCC
Confidence 888888743 22111 223 5788888877753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.3e-18 Score=139.02 Aligned_cols=85 Identities=27% Similarity=0.489 Sum_probs=64.5
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
++.+++.|.|++|.++ ..|..++.+.+|++|++++|+++ .+|..++.+++|++|+++-|++. .+|.+|+.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~------ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF------ 101 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC------
Confidence 5777888888888887 55666888888888888888887 67778888888888888888777 777777765
Q ss_pred cccchhhhhhccCcccEEECCCCcCc
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLT 127 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 127 (502)
+.|+.||+.+|++.
T Consensus 102 ------------p~levldltynnl~ 115 (264)
T KOG0617|consen 102 ------------PALEVLDLTYNNLN 115 (264)
T ss_pred ------------chhhhhhccccccc
Confidence 66666666665443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.7e-17 Score=133.98 Aligned_cols=166 Identities=31% Similarity=0.589 Sum_probs=135.4
Q ss_pred cCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCcc
Q 037195 233 KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312 (502)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 312 (502)
.+...+.|.+++|+++ .+|+.+..+.+|+.|++.+|++. ..|..+..++.|+.|+++-|++.. .|..| ..+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgf--gs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGF--GSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-Ccccc--CCCchhh
Confidence 4556778888888888 56667888888899999988884 567778888889999988888763 34444 5688999
Q ss_pred EEEccCccCCC-CCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCC
Q 037195 313 IIDLSYNRFTG-VLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTE 391 (502)
Q Consensus 313 ~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 391 (502)
.||+.+|++.. .+|..|+ .++.|+.|+|+.|.+. .+|..++.+++|+.|.+.+|.+- .+|..++.+..
T Consensus 106 vldltynnl~e~~lpgnff---------~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFF---------YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred hhhccccccccccCCcchh---------HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 99999888764 4555442 3888999999999998 77888999999999999999998 89999999999
Q ss_pred CCEEeCCCCCCCccCchhcccCCC
Q 037195 392 LESLDLSSNKLAGRIPTQLASLNY 415 (502)
Q Consensus 392 L~~L~ls~n~l~~~~p~~~~~l~~ 415 (502)
|++|.+.+|+++ .+|.+++.+..
T Consensus 175 lrelhiqgnrl~-vlppel~~l~l 197 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPELANLDL 197 (264)
T ss_pred HHHHhcccceee-ecChhhhhhhh
Confidence 999999999999 67878776653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=5e-15 Score=152.88 Aligned_cols=120 Identities=33% Similarity=0.568 Sum_probs=103.8
Q ss_pred CccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCC
Q 037195 310 KLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 389 (502)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 389 (502)
.++.|+|++|.+.+.+|..+ ..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i---------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI---------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 47899999999999999766 348999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCCCCCCCC
Q 037195 390 TELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFPLSKSCS 449 (502)
Q Consensus 390 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~~~~~c~ 449 (502)
++|+.|++++|+++|.+|..+..+. .......+.+|+.+|+.|....|.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~-----------~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRL-----------LHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhcc-----------ccCceEEecCCccccCCCCCCCCc
Confidence 9999999999999999999876531 111234588999999977555664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=4e-11 Score=124.09 Aligned_cols=93 Identities=35% Similarity=0.586 Sum_probs=88.3
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+.|+|++|.+.|.+|..+. .+++|+.|+|++|.+.+.+|..++.+++|++|+|++|++.+.+|+.++++++|++|+|++
T Consensus 421 ~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5789999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCChhhhcc
Q 037195 82 NQLIGSIPSSIFEL 95 (502)
Q Consensus 82 n~l~~~~p~~~~~l 95 (502)
|.+++.+|..++.+
T Consensus 500 N~l~g~iP~~l~~~ 513 (623)
T PLN03150 500 NSLSGRVPAALGGR 513 (623)
T ss_pred CcccccCChHHhhc
Confidence 99999999988753
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=4.4e-13 Score=128.11 Aligned_cols=186 Identities=26% Similarity=0.347 Sum_probs=150.5
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
..||+.|++. .+|..+. .+..|+.+.|.+|.+. .+|..+.++..|++|||+.|++. .+|..++.| -|+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence 4688889986 7888888 7889999999999988 78888999999999999999998 778878777 4899999999
Q ss_pred cCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC--CCCCCCceEeCcCCcCCccCCCC-CCCcc
Q 037195 83 QLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH--LPWKNLEYLHLDSNLLQGSLLNL-PPHMR 159 (502)
Q Consensus 83 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~-~~~L~ 159 (502)
+++ .+|..++.+ .+|..|+.+.|.+..++. ..+.+|+.|.+..|.+....... .-.|.
T Consensus 154 kl~-~lp~~ig~~------------------~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi 214 (722)
T KOG0532|consen 154 KLT-SLPEEIGLL------------------PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLI 214 (722)
T ss_pred ccc-cCCcccccc------------------hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCcee
Confidence 988 889888844 889999999999988877 46788889999988887655544 34577
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccc--cccc-ccEEEccCC
Q 037195 160 EFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCL--GNST-LDTLDLGMN 213 (502)
Q Consensus 160 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~-L~~L~l~~n 213 (502)
.|+++.|+++ .+|..|.+++.|++|-|.+|.++..+...- +... .++|+..-+
T Consensus 215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9999999998 788999999999999999999876443321 2222 556666443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.8e-12 Score=124.10 Aligned_cols=167 Identities=26% Similarity=0.414 Sum_probs=130.4
Q ss_pred cCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCC
Q 037195 226 SLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTR 305 (502)
Q Consensus 226 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 305 (502)
++|..++.+..|+.+.+..|.+. .+|..+..+..|+.+|++.|+++ ..|..++.++ |+.|.+++|+++..+.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~i--- 162 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEI--- 162 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCccc---
Confidence 45666666677888888888887 67778888888999999999884 4566666665 889999999987554433
Q ss_pred CCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchh
Q 037195 306 VPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSS 385 (502)
Q Consensus 306 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 385 (502)
...+.|..||.+.|.+....+ ..+.+.+|+.|.+..|++.. .|+.+.. -.|..||+++|+++ .+|..
T Consensus 163 g~~~tl~~ld~s~nei~slps----------ql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQSLPS----------QLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccchhHHHhhhhhhhhhhchH----------HhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchh
Confidence 257889999999998874332 23568899999999999984 5555664 46889999999998 99999
Q ss_pred ccCCCCCCEEeCCCCCCCccCchhccc
Q 037195 386 LRNLTELESLDLSSNKLAGRIPTQLAS 412 (502)
Q Consensus 386 l~~l~~L~~L~ls~n~l~~~~p~~~~~ 412 (502)
|.+|+.|++|-|.+|+++ ..|+.++.
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHh
Confidence 999999999999999998 45666554
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.5e-11 Score=108.85 Aligned_cols=129 Identities=32% Similarity=0.440 Sum_probs=78.1
Q ss_pred CCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHH
Q 037195 259 RHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQME 338 (502)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 338 (502)
..|+++|+++|.|+ .+...+.-.|.++.|+++.|.+...... ..+++|+.|||++|.++.. ..|-
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~N~Ls~~-~Gwh--------- 348 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNL----AELPQLQLLDLSGNLLAEC-VGWH--------- 348 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhh----hhcccceEeecccchhHhh-hhhH---------
Confidence 34666666666663 2334445556666666666666543221 3366666666666665521 1111
Q ss_pred HHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCC-chhccCCCCCCEEeCCCCCCCc
Q 037195 339 RILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGI-PSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 339 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
..+-++++|.|++|.+.+ ...++.+-+|..||+++|+|.... -..++++|-|+.+.+.+|++.+
T Consensus 349 ~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 225667777777777643 344666777888888888776221 1357778888888888888874
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=4.7e-12 Score=114.41 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=76.8
Q ss_pred CCCCcEEEccCCccCccC----CcccCCCCCCCEEEccCCcCcccC--CCCCCCCCCCCccEEEccCccCCCCCchhhhc
Q 037195 258 CRHLEVIDVGNNQINDTF----PHWLDVLPELQVLTLRSNRFRGPI--DDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLH 331 (502)
Q Consensus 258 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 331 (502)
-+.|+++....|++.... ...|...+.|+.+.+..|.+...- .....+..+++|+.|||.+|.++......+.+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 345666666666654322 223344566666666666654110 00112244666666666666665332222211
Q ss_pred CCchhHHHHhcccCeeeccCCcccccchhh----h-cCCCCCCEEeCcCCcCCCC----CchhccCCCCCCEEeCCCCCC
Q 037195 332 GNDIQMERILTTFATIDLSSNRFQGEILEV----L-GKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKL 402 (502)
Q Consensus 332 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~n~l 402 (502)
..+..++|++|++++|.+...-..+ + ...|+|+.|.+.+|.++.. +-..+...+.|..|+|++|++
T Consensus 236 -----aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 -----ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -----HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1233556677777777666442222 2 3467788888888877632 223455577888888888888
Q ss_pred C
Q 037195 403 A 403 (502)
Q Consensus 403 ~ 403 (502)
.
T Consensus 311 ~ 311 (382)
T KOG1909|consen 311 G 311 (382)
T ss_pred c
Confidence 3
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.7e-10 Score=114.08 Aligned_cols=101 Identities=35% Similarity=0.451 Sum_probs=64.5
Q ss_pred EEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCC-CCCEEEcccCcCcccCChhhhcccCCeeccccch
Q 037195 28 YLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLT-RLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAA 106 (502)
Q Consensus 28 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~ 106 (502)
.+++..+.+. .....+..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. .+|..+..+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l----------- 162 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL----------- 162 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcc-----------
Confidence 4666666653 22233455567777777777777 5555556663 7777777777776 555555555
Q ss_pred hhhhhccCcccEEECCCCcCcccCCC--CCCCCceEeCcCCcCCc
Q 037195 107 WMWDIGVHTLIYLELSRNFLTNIDHL--PWKNLEYLHLDSNLLQG 149 (502)
Q Consensus 107 ~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~ 149 (502)
++|+.|++++|+++.++.. ....|+.|++++|.+..
T Consensus 163 -------~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 163 -------PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred -------ccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc
Confidence 7777777777777777664 55566666666665553
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=1.3e-11 Score=111.59 Aligned_cols=243 Identities=22% Similarity=0.304 Sum_probs=148.7
Q ss_pred CCCCCceEeCcCCcCCccCC-------CCCCCccEEEccCC---cCcccCCccc-------cCCCCCCEEECCCCcCccc
Q 037195 133 PWKNLEYLHLDSNLLQGSLL-------NLPPHMREFSISRN---NLTGEIPSSF-------CNLSYIRFFDSSNNSLSGQ 195 (502)
Q Consensus 133 ~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n---~l~~~~~~~l-------~~l~~L~~L~l~~n~l~~~ 195 (502)
++..++++++++|.+..... ...+.|+..++++- +....+|..+ ...++|+++|||+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 46788888888887763221 22456777777652 2222344332 3456888888888877654
Q ss_pred ccccc----cccc-ccEEEccCCccCCCCCCeeeccC-----ccchhcCCCccEEeccCCccccC----CCccccCCCCC
Q 037195 196 ILQCL----GNST-LDTLDLGMNNFQDMRMNKFSGSL-----PQTFAKSCVLVSLNLNGNRLEGP----LPPSLVNCRHL 261 (502)
Q Consensus 196 ~~~~~----~~~~-L~~L~l~~n~~~~~~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L 261 (502)
.+..+ ..+. |+.|.+.+|.+.......+.+.+ ....+.-+.|+.+...+|++... +...|...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 43332 2333 88888888877654443333211 11233445688888888877532 22345667788
Q ss_pred cEEEccCCccCcc----CCcccCCCCCCCEEEccCCcCcccCC--CCCCCCCCCCccEEEccCccCCCCCchhhhcCCch
Q 037195 262 EVIDVGNNQINDT----FPHWLDVLPELQVLTLRSNRFRGPID--DTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDI 335 (502)
Q Consensus 262 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 335 (502)
+.+.+..|.|... ....+..+++|+.|+|.+|.|+..-. .......+++|+.+++++|.+.......++.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~---- 263 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD---- 263 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH----
Confidence 8888888877432 23456678888888888888763211 1111244678888888888877554443322
Q ss_pred hHHHHhcccCeeeccCCccccc----chhhhcCCCCCCEEeCcCCcCC
Q 037195 336 QMERILTTFATIDLSSNRFQGE----ILEVLGKLNSLKSLNISHNNLT 379 (502)
Q Consensus 336 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 379 (502)
.+....|+|+.|++.+|.++.. +...+...+.|+.|+|++|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2223467888888888888743 3334566788888888888873
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.7e-10 Score=96.59 Aligned_cols=125 Identities=27% Similarity=0.368 Sum_probs=30.8
Q ss_pred CCCCCcEEEccCCccCccCCcccC-CCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCch
Q 037195 257 NCRHLEVIDVGNNQINDTFPHWLD-VLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDI 335 (502)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 335 (502)
++..+++|+|.+|.|... +.+. .+.+|+.|++++|.++.... + ..++.|+.|++++|+++...+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~--l--~~L~~L~~L~L~~N~I~~i~~~-------- 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEG--L--PGLPRLKTLDLSNNRISSISEG-------- 82 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CHH--------
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccccC--c--cChhhhhhcccCCCCCCccccc--------
Confidence 333455555555555332 2232 34555555565555553321 1 2345555555555555432110
Q ss_pred hHHHHhcccCeeeccCCccccc-chhhhcCCCCCCEEeCcCCcCCCCCch----hccCCCCCCEEeC
Q 037195 336 QMERILTTFATIDLSSNRFQGE-ILEVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELESLDL 397 (502)
Q Consensus 336 ~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~l 397 (502)
+...+++|++|++++|++... ....+..+++|+.|+|.+|.++.. +. .+..+|+|+.||-
T Consensus 83 -l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 83 -LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred -hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 012245555555555555432 112344555566666665555422 21 2344555555543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=2.8e-10 Score=112.61 Aligned_cols=190 Identities=31% Similarity=0.396 Sum_probs=145.8
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCC-CCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQ-QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
.++++.+.+...+. .+. .++.++.|++.+|.++ .++.....++ +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~-~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-hhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 35666666643332 333 5688999999999998 6677777775 9999999999998 6667789999999999999
Q ss_pred CcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCC--CCCCCceEeCcCCcCCccCCC--CCCC
Q 037195 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHL--PWKNLEYLHLDSNLLQGSLLN--LPPH 157 (502)
Q Consensus 82 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~--~~~~ 157 (502)
|++. .+|...+.+ +.|+.|++++|.++.++.. ....|+++.+++|.+...... ....
T Consensus 173 N~l~-~l~~~~~~~------------------~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~ 233 (394)
T COG4886 173 NDLS-DLPKLLSNL------------------SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233 (394)
T ss_pred chhh-hhhhhhhhh------------------hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhccc
Confidence 9998 777766544 8899999999999999885 556699999999954333222 2677
Q ss_pred ccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCC
Q 037195 158 MREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDM 218 (502)
Q Consensus 158 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~ 218 (502)
+..+.+.+|.+.. .+..+..++.++.|++++|.++.... ++... ++.+++++|.+...
T Consensus 234 l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 234 LSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 7778788887773 36677888889999999999886655 44434 99999988876643
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-10 Score=108.58 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=42.2
Q ss_pred CcccEEECCCCcCcccCC-----CCCCCCceEeCcCCcCCccCCC----CCCCccEEEccCCcCcccCCc-cccCCCCCC
Q 037195 114 HTLIYLELSRNFLTNIDH-----LPWKNLEYLHLDSNLLQGSLLN----LPPHMREFSISRNNLTGEIPS-SFCNLSYIR 183 (502)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~ 183 (502)
++++.|||+.|-+....+ ..+++|+.|+++.|.+.-.... ..++|+.|.++.|+++..... .+..+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 455555555554443322 2455555555555554422211 156677777777777643222 234677777
Q ss_pred EEECCCCc
Q 037195 184 FFDSSNNS 191 (502)
Q Consensus 184 ~L~l~~n~ 191 (502)
.|+++.|.
T Consensus 226 ~L~L~~N~ 233 (505)
T KOG3207|consen 226 VLYLEANE 233 (505)
T ss_pred Hhhhhccc
Confidence 77777774
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=6.2e-10 Score=94.45 Aligned_cols=127 Identities=27% Similarity=0.386 Sum_probs=45.4
Q ss_pred CCCCCcEEEccCCcccccCCcCCC-CCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhh-cccCCe
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFS-NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIF-ELLNLT 99 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~ 99 (502)
+..+++.|+|++|.|+. +. .++ .+.+|+.|++++|.+.. + +.+..+++|++|++++|+++ .+...+. .+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l---- 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNL---- 87 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-----
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhC----
Confidence 45678999999999873 33 455 57889999999999884 3 35788999999999999998 5655443 34
Q ss_pred eccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCC---ccc
Q 037195 100 FAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIP---SSF 176 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l 176 (502)
++|++|++++|++.+.... ..| ..+++|+.|++.+|+++...- ..+
T Consensus 88 --------------p~L~~L~L~~N~I~~l~~l--~~L---------------~~l~~L~~L~L~~NPv~~~~~YR~~vi 136 (175)
T PF14580_consen 88 --------------PNLQELYLSNNKISDLNEL--EPL---------------SSLPKLRVLSLEGNPVCEKKNYRLFVI 136 (175)
T ss_dssp --------------TT--EEE-TTS---SCCCC--GGG---------------GG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred --------------CcCCEEECcCCcCCChHHh--HHH---------------HcCCCcceeeccCCcccchhhHHHHHH
Confidence 8888888888887765431 000 113566666666666663311 234
Q ss_pred cCCCCCCEEECC
Q 037195 177 CNLSYIRFFDSS 188 (502)
Q Consensus 177 ~~l~~L~~L~l~ 188 (502)
..+|+|+.||-.
T Consensus 137 ~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 137 YKLPSLKVLDGQ 148 (175)
T ss_dssp HH-TT-SEETTE
T ss_pred HHcChhheeCCE
Confidence 667888888743
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=3.3e-10 Score=78.94 Aligned_cols=61 Identities=36% Similarity=0.552 Sum_probs=52.1
Q ss_pred cccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCC
Q 037195 342 TTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 402 (502)
Q Consensus 342 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l 402 (502)
|+|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877777888899999999999999877777889999999999999875
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.8e-10 Score=102.13 Aligned_cols=133 Identities=21% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCC
Q 037195 179 LSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 258 (502)
Q Consensus 179 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 258 (502)
.+.|+++|+++|.|+...-..--.+.++.|++++|.+..+. .+..+.+|+.||+++|.++. +..+-.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~----------nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ----------NLAELPQLQLLDLSGNLLAE-CVGWHLKL 351 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh----------hhhhcccceEeecccchhHh-hhhhHhhh
Confidence 34455555555554422211111122555555555544332 24456778888888888873 33445567
Q ss_pred CCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCC
Q 037195 259 RHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVL 325 (502)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 325 (502)
-++++|.+++|.+... +.+.++-+|..|++.+|++...- .......+|.|+++.|.+|.+.+..
T Consensus 352 GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld-eV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD-EVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH-HhcccccccHHHHHhhcCCCccccc
Confidence 7888899999888543 44677888889999999886432 2223356888888888888877543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=7.6e-10 Score=77.11 Aligned_cols=61 Identities=48% Similarity=0.661 Sum_probs=52.8
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcC
Q 037195 24 TQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQL 84 (502)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 84 (502)
++|++|++++|.++...+..|..+++|++|++++|++....+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999999999866667889999999999999999877788899999999999998874
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.7e-10 Score=105.16 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=34.6
Q ss_pred CCCCCcEEEccCCcccccCC--cCCCCCCCCCEEeccCCcCCc--cCCcccCCCCCCCEEEcccCcCc
Q 037195 22 DITQLAYLDLSFNSFSGHIP--SSFSNLQQLRLLDLRYNNFVG--KIPDIFTNLTRLSYLGLGGNQLI 85 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~ 85 (502)
++++|+...|.++.+. ..+ .....|++++.|||+.|-+.. .+-.....+++|+.|+|+.|++.
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 4556666666666554 222 234556666666666665442 12233445666666666666654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=2.1e-09 Score=113.95 Aligned_cols=104 Identities=31% Similarity=0.365 Sum_probs=71.2
Q ss_pred CCCCCcEEEccCCc--ccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCe
Q 037195 22 DITQLAYLDLSFNS--FSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLT 99 (502)
Q Consensus 22 ~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 99 (502)
.++.|++|-+..|. +.......|..++.|++|||++|.-.+.+|+.++.+-+||+|+++++.+. .+|..++++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L---- 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL---- 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHH----
Confidence 45678888888875 44233334777888888888877666678888888888888888888887 788888877
Q ss_pred eccccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcC
Q 037195 100 FAISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDS 144 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~ 144 (502)
..|.+|++..+.-....+ ..+.+|++|.+..
T Consensus 618 --------------k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 618 --------------KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred --------------HhhheeccccccccccccchhhhcccccEEEeec
Confidence 667777777654322222 1245555555543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=2.9e-09 Score=112.89 Aligned_cols=103 Identities=32% Similarity=0.413 Sum_probs=76.5
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCc--CCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCee
Q 037195 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNN--FVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTF 100 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 100 (502)
....+...+.+|.+. .++... .+++|++|-+..|. +....++.|..++.|++|||++|.--+++|+.++.+
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L----- 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL----- 594 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh-----
Confidence 467788888888876 445443 44589999999886 554555568899999999999988666899999988
Q ss_pred ccccchhhhhhccCcccEEECCCCcCcccCC--CCCCCCceEeCcCC
Q 037195 101 AISVAAWMWDIGVHTLIYLELSRNFLTNIDH--LPWKNLEYLHLDSN 145 (502)
Q Consensus 101 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n 145 (502)
-+|++|++++..+..++. ..+..|.+|++..+
T Consensus 595 -------------i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 595 -------------VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred -------------hhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 788888888877776655 24555555555543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.6e-09 Score=105.83 Aligned_cols=168 Identities=26% Similarity=0.286 Sum_probs=76.5
Q ss_pred CcccEEECCCCcCcccCCC-CCCCCceEeCcCCcCCccCCCC-CCCccEEEccCCcCcccCC-ccccCCCCCCEEECCCC
Q 037195 114 HTLIYLELSRNFLTNIDHL-PWKNLEYLHLDSNLLQGSLLNL-PPHMREFSISRNNLTGEIP-SSFCNLSYIRFFDSSNN 190 (502)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n 190 (502)
++|++|++++|.++.+... .++.|+.|++++|.+....-.. ++.|+.+++++|.++...+ . ...+.+++.+++..|
T Consensus 118 ~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence 4445555555555444442 3344555555555554332222 5566666666666664333 1 355666777777776
Q ss_pred cCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCC--CccEEeccCCccccCCCccccCCCCCcEEEccC
Q 037195 191 SLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC--VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGN 268 (502)
Q Consensus 191 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 268 (502)
.+...-.... ...+..+++..|.++.+.. +..+. .|+.+++++|.+.. .+..+..+..+..+++.+
T Consensus 197 ~i~~i~~~~~-~~~l~~~~l~~n~i~~~~~----------l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 197 SIREIEGLDL-LKKLVLLSLLDNKISKLEG----------LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSS 264 (414)
T ss_pred chhcccchHH-HHHHHHhhcccccceeccC----------cccchhHHHHHHhcccCcccc-ccccccccccccccchhh
Confidence 6543211000 0012222343333332210 00111 25666666666652 223344555666666666
Q ss_pred CccCccCCcccCCCCCCCEEEccCCcCc
Q 037195 269 NQINDTFPHWLDVLPELQVLTLRSNRFR 296 (502)
Q Consensus 269 n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (502)
|++... ..+...+.+..+....+.+.
T Consensus 265 n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 265 NRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccc--ccccccchHHHhccCcchhc
Confidence 655432 12333344444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=7.4e-09 Score=102.62 Aligned_cols=216 Identities=26% Similarity=0.330 Sum_probs=98.2
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhc
Q 037195 155 PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAK 233 (502)
Q Consensus 155 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 233 (502)
+..++.+.+..|.+.. +...+..+++|+.+++.+|.+...... +.... |+.|++++|.|+++. .+..
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~----------~l~~ 138 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE----------GLST 138 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc----------chhh
Confidence 3455555566665553 223355566666666666666543221 12122 555555555554332 1222
Q ss_pred CCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCC-cccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCcc
Q 037195 234 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFP-HWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312 (502)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 312 (502)
++.|+.|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...... ..+..+.
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~ 211 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLV 211 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHH
Confidence 33355555555555422 123334555555555555543322 1 23444555555555554422111 1122333
Q ss_pred EEEccCccCCCCCchhhhcCCchhHHHHhc--ccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCC
Q 037195 313 IIDLSYNRFTGVLPIWYLHGNDIQMERILT--TFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT 390 (502)
Q Consensus 313 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 390 (502)
.+++..|.++..-+.. .+. .|+.+++++|.+... +..+..+..+..|++.+|++... ..+...+
T Consensus 212 ~~~l~~n~i~~~~~l~-----------~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~ 277 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGLN-----------ELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLP 277 (414)
T ss_pred HhhcccccceeccCcc-----------cchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccc
Confidence 3344444443221110 011 256666666666522 23344555666666666665422 1233344
Q ss_pred CCCEEeCCCCCCC
Q 037195 391 ELESLDLSSNKLA 403 (502)
Q Consensus 391 ~L~~L~ls~n~l~ 403 (502)
.+..+....|++.
T Consensus 278 ~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 278 KLSELWLNDNKLA 290 (414)
T ss_pred hHHHhccCcchhc
Confidence 4555555555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-09 Score=94.59 Aligned_cols=182 Identities=20% Similarity=0.191 Sum_probs=122.7
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCc-cCccC-CcccCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQ-INDTF-PHWLDVL 282 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l 282 (502)
++.+|+++..++.- .+...+..|.+|+.|.+.++++...+...+.+-.+|+.|+++.+. ++... .-.+..+
T Consensus 187 lq~lDLS~s~it~s-------tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 187 LQHLDLSNSVITVS-------TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hHHhhcchhheeHH-------HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 66777765544321 223346678889999999999988777778888899999998863 33211 1235678
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCc-ccccchhh
Q 037195 283 PELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNR-FQGEILEV 361 (502)
Q Consensus 283 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~ 361 (502)
..|..|+++.|......-......--++|+.|+++++.-.-. +.......+.+|+|..||||+|. ++.....+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ------KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh------hhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 899999999998764432111112246888899988642200 11111234568999999999885 44445556
Q ss_pred hcCCCCCCEEeCcCCcCCCCCchh---ccCCCCCCEEeCCCCC
Q 037195 362 LGKLNSLKSLNISHNNLTGGIPSS---LRNLTELESLDLSSNK 401 (502)
Q Consensus 362 ~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~ls~n~ 401 (502)
|-.++.|++|.++.|.. .+|.. +...|+|.+||+-++-
T Consensus 334 ~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 77889999999999875 56654 5667889999987664
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=7.5e-09 Score=102.39 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=29.5
Q ss_pred ccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCc
Q 037195 237 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFR 296 (502)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (502)
|...+.+.|.+. .+..++.-++.++.|+|+.|++... ..+..++.|++|||+.|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 444555555554 3444455555555555555555433 24445555555555555554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.8e-08 Score=88.39 Aligned_cols=170 Identities=19% Similarity=0.173 Sum_probs=122.8
Q ss_pred CccEEeccCCcccc-CCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE
Q 037195 236 VLVSLNLNGNRLEG-PLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314 (502)
Q Consensus 236 ~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 314 (502)
.|+++|+++..++. .+-..+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+.=...-.......++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48999999988763 23334678899999999999999888888888999999999987622121111222568899999
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccc---ccchhhhcCCCCCCEEeCcCC-cCCCCCchhccCCC
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQ---GEILEVLGKLNSLKSLNISHN-NLTGGIPSSLRNLT 390 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 390 (502)
+++.|.+........ ....-++|+.|+|+++.-. ..+..-...+|.|.+|||++| .++...-..|.+++
T Consensus 266 NlsWc~l~~~~Vtv~-------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVA-------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred CchHhhccchhhhHH-------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 999998775442221 1233578899999987422 223333468999999999987 55554445677899
Q ss_pred CCCEEeCCCCCCCccCchhcccCC
Q 037195 391 ELESLDLSSNKLAGRIPTQLASLN 414 (502)
Q Consensus 391 ~L~~L~ls~n~l~~~~p~~~~~l~ 414 (502)
.|++|.++.|.. .+|..+-.++
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~ 360 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELN 360 (419)
T ss_pred hheeeehhhhcC--CChHHeeeec
Confidence 999999999985 4677665544
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=3.7e-07 Score=80.29 Aligned_cols=93 Identities=24% Similarity=0.377 Sum_probs=56.1
Q ss_pred CCCCCcEEEccCCcccc----cCCcCCCCCCCCCEEeccCCcCCc----cC-------CcccCCCCCCCEEEcccCcCcc
Q 037195 22 DITQLAYLDLSFNSFSG----HIPSSFSNLQQLRLLDLRYNNFVG----KI-------PDIFTNLTRLSYLGLGGNQLIG 86 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~----~~-------~~~~~~l~~L~~L~L~~n~l~~ 86 (502)
.+..+..++||+|.|.. .+...+++-++|+..+++.- ++| .+ ..++..|++|+..+|++|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35667777777776653 23344566677777777643 111 11 2345677788888888877776
Q ss_pred cCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCccc
Q 037195 87 SIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 87 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
..|+.+..+-+-. ..|++|.+++|.+...
T Consensus 107 ~~~e~L~d~is~~--------------t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 107 EFPEELGDLISSS--------------TDLVHLKLNNNGLGPI 135 (388)
T ss_pred ccchHHHHHHhcC--------------CCceeEEeecCCCCcc
Confidence 6666665442211 6677777777765543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=5.6e-07 Score=80.22 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=19.5
Q ss_pred CCCCCEEeccCCcCCc--cCCcccCCCCCCCEEEcccCcCc
Q 037195 47 LQQLRLLDLRYNNFVG--KIPDIFTNLTRLSYLGLGGNQLI 85 (502)
Q Consensus 47 l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~ 85 (502)
++.++.+||..|.|.. .+...+.++++|++|+|+.|++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3455555555555542 22223345555555555555544
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=2.9e-07 Score=72.48 Aligned_cols=108 Identities=27% Similarity=0.324 Sum_probs=80.6
Q ss_pred CEEEecCCCCcccCChhhhh--CCCCCcEEEccCCcccccCCcCCC-CCCCCCEEeccCCcCCccCCcccCCCCCCCEEE
Q 037195 2 TLRNLSSSYFMGSIPASLGN--DITQLAYLDLSFNSFSGHIPSSFS-NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 78 (502)
..+||++|.+. .+++.... ...+|...+|++|.+. ..|..|. .++.++.|++++|.+. .+|+.+..++.|+.|+
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 35788888764 34443321 4567777899999887 4455444 5568899999999988 6788899999999999
Q ss_pred cccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC
Q 037195 79 LGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH 131 (502)
Q Consensus 79 L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 131 (502)
++.|.+. ..|..++.+ .++-.|+..+|....++-
T Consensus 107 l~~N~l~-~~p~vi~~L------------------~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPL------------------IKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccCccc-cchHHHHHH------------------HhHHHhcCCCCccccCcH
Confidence 9999988 788888776 677777888877766654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=1.9e-07 Score=73.47 Aligned_cols=64 Identities=31% Similarity=0.473 Sum_probs=44.6
Q ss_pred hcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCc
Q 037195 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 407 (502)
++.++.|+|++|+++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..||..+|.+. ++|
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 556667777777776 45666777777777777777776 56666666777777777777766 344
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=6e-08 Score=96.20 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=73.8
Q ss_pred CCCCceEeCcCCcCCccC--CCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEcc
Q 037195 134 WKNLEYLHLDSNLLQGSL--LNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLG 211 (502)
Q Consensus 134 ~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 211 (502)
|..|...+.+.|.+.... ...++.++.|+|+.|+++.. +.+..+++|++||+++|++...+.-....++|..|.+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 445555555555554222 22356777777777777743 36677777888888888776544333334447777776
Q ss_pred CCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCC-ccccCCCCCcEEEccCCcc
Q 037195 212 MNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQI 271 (502)
Q Consensus 212 ~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 271 (502)
+|.++.+ ..+.++.+|..||++.|-+.+.-. ..++.+..|+.|.|.+|.+
T Consensus 241 nN~l~tL----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6655533 234556667777777776643211 1244555666666666655
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.8e-06 Score=52.93 Aligned_cols=36 Identities=31% Similarity=0.543 Sum_probs=16.9
Q ss_pred ccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCC
Q 037195 343 TFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379 (502)
Q Consensus 343 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 379 (502)
+|++|++++|+++. +|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555552 3334455555555555555554
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=3.1e-05 Score=74.21 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=13.8
Q ss_pred CCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCC
Q 037195 367 SLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 400 (502)
Q Consensus 367 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n 400 (502)
+|+.|++++|... ..|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555433 2333222 34555555444
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.1e-06 Score=52.81 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=18.8
Q ss_pred CCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCc
Q 037195 49 QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLI 85 (502)
Q Consensus 49 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (502)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.3e-06 Score=78.01 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=28.3
Q ss_pred hcccCeeeccCCcccccch-hhhcCCCCCCEEeCcCCcCCCCC-chhccCCCCCCEEeCCCCCCC
Q 037195 341 LTTFATIDLSSNRFQGEIL-EVLGKLNSLKSLNISHNNLTGGI-PSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~n~l~ 403 (502)
+|++..+-+..|.+..... ..+..+|.+-.|+|+.|+|.+.. -+.+..+++|.-|.+++|++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 4555555555554433211 22333444445555555543211 123444555555555555554
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=1.3e-06 Score=76.87 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCccEEeccCCccccCCC-----ccccCCCCCcEEEccCCccCcc----CCcccCCCCCCCEEEccCCcCcccCCC----
Q 037195 235 CVLVSLNLNGNRLEGPLP-----PSLVNCRHLEVIDVGNNQINDT----FPHWLDVLPELQVLTLRSNRFRGPIDD---- 301 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~---- 301 (502)
..|+.+.+..|.|...-. ..+..+.+|+.||+++|-++.. +...+..++.|+.|.+.+|-++..-..
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 346666666666542211 1124556777777777766432 223344556677777777776532110
Q ss_pred CCCCCCCCCccEEEccCccCCCCCchh-hhcCCchhHHHHhcccCeeeccCCcccc
Q 037195 302 TKTRVPFPKLRIIDLSYNRFTGVLPIW-YLHGNDIQMERILTTFATIDLSSNRFQG 356 (502)
Q Consensus 302 ~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 356 (502)
.+.-...|+|..|-..+|...+.+-.. +++. -....+|-|..|.+.+|.+..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~---~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNE---FEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceeeeechhh---hhhcccHHHHHHHHccCcchh
Confidence 111123577777777777765433221 1100 011336777788888888874
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=8.9e-05 Score=71.16 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=35.9
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
.+++++.|++++|.++ .+|. + -.+|++|++++|.-...+|+.+ ..+|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4677888888888776 4452 1 2358888887754433556544 257888888877
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=8.1e-06 Score=84.82 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=83.0
Q ss_pred CCEEEecCCC-CcccCChhhhhCCCCCcEEEccCCcccc-cCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEE
Q 037195 1 MTLRNLSSSY-FMGSIPASLGNDITQLAYLDLSFNSFSG-HIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLG 78 (502)
Q Consensus 1 l~~L~Ls~n~-~~~~ip~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 78 (502)
|+.||+++.. ++...|..++..+|.|+.|.+++-.+.. ..-....++++|+.||+|+++++.. ..++++++||.|.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHh
Confidence 4667777764 4456677777788888888888865532 2223356788888889988888733 5678888888888
Q ss_pred cccCcCcc-cCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC---------CCCCCCceEeCcCCcCC
Q 037195 79 LGGNQLIG-SIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH---------LPWKNLEYLHLDSNLLQ 148 (502)
Q Consensus 79 L~~n~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~ 148 (502)
+.+=.+.. ..-..++.| ++|++||+|......... ..+++|+.||.++..+.
T Consensus 202 mrnLe~e~~~~l~~LF~L------------------~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNL------------------KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcc------------------cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 87765542 112344544 888888888765443321 23455555555554444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=8.5e-05 Score=62.94 Aligned_cols=126 Identities=22% Similarity=0.236 Sum_probs=75.9
Q ss_pred CcEEEccCCcccccCCcCCC-CCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 26 LAYLDLSFNSFSGHIPSSFS-NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
=+.++|.+..+..+ .. ++ -..+...+||++|.+. .-..|..++.|.+|.+++|+|+ .+...+..+.
T Consensus 21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~-------- 87 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFL-------- 87 (233)
T ss_pred ccccccccccccch-hh-ccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhc--------
Confidence 45566666655421 11 22 2335677888888875 2345778888888888888888 5555555432
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCccc---CCccccCCCC
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGE---IPSSFCNLSY 181 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~ 181 (502)
++|+.|.+.+|++...... .....+|.|+.|.+-+|++... -...++.+++
T Consensus 88 ---------p~l~~L~LtnNsi~~l~dl-----------------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 88 ---------PNLKTLILTNNSIQELGDL-----------------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ---------cccceEEecCcchhhhhhc-----------------chhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 7777777777766544321 0011145566666666655522 2245677888
Q ss_pred CCEEECCCC
Q 037195 182 IRFFDSSNN 190 (502)
Q Consensus 182 L~~L~l~~n 190 (502)
|+.||...-
T Consensus 142 l~~LDF~kV 150 (233)
T KOG1644|consen 142 LRTLDFQKV 150 (233)
T ss_pred ceEeehhhh
Confidence 888887654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=62.00 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=65.9
Q ss_pred hhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCC
Q 037195 19 LGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNL 98 (502)
Q Consensus 19 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 98 (502)
++........+||++|.+. .+ +.|..++.|..|.+.+|+|+.+.|.--.-+++|+.|.|.+|++. . ++.+..|
T Consensus 37 lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~----l~dl~pL 109 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-E----LGDLDPL 109 (233)
T ss_pred ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-h----hhhcchh
Confidence 3334557788999999886 33 35888999999999999999766665556788999999999876 2 2222111
Q ss_pred eeccccchhhhhhccCcccEEECCCCcCcccC
Q 037195 99 TFAISVAAWMWDIGVHTLIYLELSRNFLTNID 130 (502)
Q Consensus 99 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 130 (502)
. .+|+|++|.+-+|..+.-.
T Consensus 110 a------------~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 110 A------------SCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred c------------cCCccceeeecCCchhccc
Confidence 1 2377888888777666543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.43 E-value=2.7e-06 Score=79.48 Aligned_cols=276 Identities=18% Similarity=0.109 Sum_probs=134.4
Q ss_pred CcccEEECCCCcCcccCC-----CCCCCCceEeCcCCcC-CccC----CCCCCCccEEEccCC-cCcccCCcc-ccCCCC
Q 037195 114 HTLIYLELSRNFLTNIDH-----LPWKNLEYLHLDSNLL-QGSL----LNLPPHMREFSISRN-NLTGEIPSS-FCNLSY 181 (502)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~~n-~l~~~~~~~-l~~l~~ 181 (502)
..|+.|.+.+++-.+..+ ..++++++|.+.++.. +... ...++.|+++++..| .++...... -..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456677777665444433 2456666666666542 2111 122667777777663 333322222 235667
Q ss_pred CCEEECCCCc-Ccccccccc-cccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCcc-ccCCC-cccc
Q 037195 182 IRFFDSSNNS-LSGQILQCL-GNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRL-EGPLP-PSLV 256 (502)
Q Consensus 182 L~~L~l~~n~-l~~~~~~~~-~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~l~ 256 (502)
|++++++++. +++.....+ ...+ ++.+...++.-. ..+ .+-..-+.+..+.++++..|.. +..-- ..-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le----~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELE----ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHH----HHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 7777777763 222111111 1111 333333221100 000 0001112233355555545432 21110 0112
Q ss_pred CCCCCcEEEccCCc-cCccCCccc-CCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCc
Q 037195 257 NCRHLEVIDVGNNQ-INDTFPHWL-DVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGND 334 (502)
Q Consensus 257 ~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 334 (502)
.+..|+.++.+++. +.+..-..+ .+.++|+.+.++.++--+.........+++.|+.+++..+...... ..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-------tL 364 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-------TL 364 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-------hH
Confidence 45667777777653 332222222 3567788888877774333222222245677777777766443111 01
Q ss_pred hhHHHHhcccCeeeccCCcccccc-----hhhhcCCCCCCEEeCcCCcC-CCCCchhccCCCCCCEEeCCCCCC
Q 037195 335 IQMERILTTFATIDLSSNRFQGEI-----LEVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTELESLDLSSNKL 402 (502)
Q Consensus 335 ~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~ls~n~l 402 (502)
.+....++.|+.+.++++...... ...-..+..|+.+.|+++.. +...-+.+...++|+.+++-.++-
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 122345778888888877543221 11123456677788877754 333345566677788877777653
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=0.00019 Score=74.88 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=32.1
Q ss_pred hcccCeeeccCCcccc-cchhhhcCCCCCCEEeCcCCcCCCCC--c----hhccCCCCCCEEeCCCCCCCccCch
Q 037195 341 LTTFATIDLSSNRFQG-EILEVLGKLNSLKSLNISHNNLTGGI--P----SSLRNLTELESLDLSSNKLAGRIPT 408 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~ls~n~l~~~~p~ 408 (502)
+++|+.|.+.+=.+.. .....+-++++|+.||+|..+..... . +.-..+|.|+.||.|+..+...+-+
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 4444444444433332 12223445666666666655433111 1 1222366777777776666654433
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.21 E-value=6.2e-06 Score=77.18 Aligned_cols=87 Identities=21% Similarity=0.127 Sum_probs=47.7
Q ss_pred CCCccEEeccCCcccc--CCCccccCCCCCcEEEccCCcc-CccC----CcccCCCCCCCEEEccCCcCcccCCCCCCCC
Q 037195 234 SCVLVSLNLNGNRLEG--PLPPSLVNCRHLEVIDVGNNQI-NDTF----PHWLDVLPELQVLTLRSNRFRGPIDDTKTRV 306 (502)
Q Consensus 234 l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l-~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 306 (502)
+..|+.+++.++.... .+...-.+++.|+.+.++.+.. ++.. ...-..+..|+.+.+++++........ ...
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~ 423 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLS 423 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHh
Confidence 4457777776665421 1222234667788888776643 2221 112234667778888887765332111 114
Q ss_pred CCCCccEEEccCccC
Q 037195 307 PFPKLRIIDLSYNRF 321 (502)
Q Consensus 307 ~l~~L~~L~L~~n~l 321 (502)
.+++|+.+++-+++-
T Consensus 424 ~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 424 ICRNLERIELIDCQD 438 (483)
T ss_pred hCcccceeeeechhh
Confidence 467777777776653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00028 Score=62.44 Aligned_cols=88 Identities=25% Similarity=0.330 Sum_probs=51.5
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCC--cCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCe
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYN--NFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLT 99 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 99 (502)
.+..|+.|++.+..++.. ..|-.+++|+.|.++.| .+.+.++--...+++|++|++++|++. +++.+..++++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l- 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKEL- 115 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhh-
Confidence 456666666666665522 23566677777777777 444444444445577777777777765 24444444332
Q ss_pred eccccchhhhhhccCcccEEECCCCcCcc
Q 037195 100 FAISVAAWMWDIGVHTLIYLELSRNFLTN 128 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 128 (502)
++|..|++..|..+.
T Consensus 116 --------------~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 --------------ENLKSLDLFNCSVTN 130 (260)
T ss_pred --------------cchhhhhcccCCccc
Confidence 556666666655444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00047 Score=61.09 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=27.2
Q ss_pred CccEEeccCCccccCCCccccCCCCCcEEEccCC--ccCccCCcccCCCCCCCEEEccCCcCc
Q 037195 236 VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN--QINDTFPHWLDVLPELQVLTLRSNRFR 296 (502)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (502)
.|+.+.+.+..++.. ..+-.+++|++|.++.| ++.+.++.....+|+|+++++++|++.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444321 12334455555555555 333333333334455555555555554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.77 E-value=0.006 Score=49.49 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=39.4
Q ss_pred CChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 15 IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 15 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
++...+..+++|+.+.+.. .+.......|.++++|+.+++.++ +......+|.++++|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 4556665777888888875 465566667888888998888775 6655566788888888888865
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0073 Score=49.00 Aligned_cols=49 Identities=29% Similarity=0.337 Sum_probs=13.7
Q ss_pred hcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 037195 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 392 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 392 (502)
+++|+.+++..+ +.......|.++ .|+.+.+.. .++......|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 344444444332 322333344444 555555544 2322333444444443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=7.9e-05 Score=66.24 Aligned_cols=103 Identities=25% Similarity=0.265 Sum_probs=46.9
Q ss_pred ccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 237 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
.++|+.-+|.+..+ .....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|... .+.....++|+|+.|.|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhhHhh
Confidence 44455555544422 1123455555555555555433 2244555555555555554321 11222234555555555
Q ss_pred cCccCCCCCchhhhcCCchhHHHHhcccCeee
Q 037195 317 SYNRFTGVLPIWYLHGNDIQMERILTTFATID 348 (502)
Q Consensus 317 ~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 348 (502)
..|.-.+..+..+ ....++.+|+|+.||
T Consensus 96 ~ENPCc~~ag~nY----R~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNY----RRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhH----HHHHHHHcccchhcc
Confidence 5555444433322 123334456666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00026 Score=63.03 Aligned_cols=56 Identities=32% Similarity=0.365 Sum_probs=27.8
Q ss_pred hcccCeeeccCCcccccc-hhhhcCCCCCCEEeCcCCcCCCCCch-----hccCCCCCCEEe
Q 037195 341 LTTFATIDLSSNRFQGEI-LEVLGKLNSLKSLNISHNNLTGGIPS-----SLRNLTELESLD 396 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~ 396 (502)
|++|++|+|..|.|.+.. ...+.++|+|+.|.|..|.=.+.-+. .+.-+|+|+.||
T Consensus 62 CtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 62 CTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 555555555555554321 12234566666666665554433332 244455555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.74 E-value=0.0056 Score=32.20 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=8.4
Q ss_pred cCeeeccCCcccccchhhh
Q 037195 344 FATIDLSSNRFQGEILEVL 362 (502)
Q Consensus 344 L~~L~Ls~n~l~~~~~~~~ 362 (502)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 344333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.72 E-value=0.003 Score=33.27 Aligned_cols=17 Identities=59% Similarity=0.849 Sum_probs=7.9
Q ss_pred CCEEeCCCCCCCccCchh
Q 037195 392 LESLDLSSNKLAGRIPTQ 409 (502)
Q Consensus 392 L~~L~ls~n~l~~~~p~~ 409 (502)
|++||+++|+++ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444455555444 34443
No 71
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.58 E-value=0.021 Score=34.56 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=16.5
Q ss_pred eehhhhhHHHHHHHHHHhhhhhhcCCCC
Q 037195 475 KLAKLGYASGVVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
..+.+++.+++++.++.++++++|||+|
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEeccC
Confidence 4444555555666655566666677765
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.041 Score=26.75 Aligned_cols=11 Identities=45% Similarity=0.869 Sum_probs=3.3
Q ss_pred CCEEeCcCCcC
Q 037195 368 LKSLNISHNNL 378 (502)
Q Consensus 368 L~~L~L~~N~l 378 (502)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.26 E-value=0.0019 Score=56.20 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
++||++.|+.. .+-..+. -++.+..|+++.|.+. .+|..+.+.+.++.+++.+|..+ ..|.+++..++++++++.+
T Consensus 45 tvld~~s~r~v-n~~~n~s-~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFS-ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeehhhhhHHH-hhccchH-HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 46777777654 2333344 4566777777777776 67777777777887787777776 6777788888888888777
Q ss_pred CcCc
Q 037195 82 NQLI 85 (502)
Q Consensus 82 n~l~ 85 (502)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 7643
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.65 E-value=0.013 Score=59.53 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=31.8
Q ss_pred cCCCccEEeccCCc-cccCCCcccc-CCCCCcEEEccCCc-cCccCCc-ccCCCCCCCEEEccCCcC
Q 037195 233 KSCVLVSLNLNGNR-LEGPLPPSLV-NCRHLEVIDVGNNQ-INDTFPH-WLDVLPELQVLTLRSNRF 295 (502)
Q Consensus 233 ~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~~ 295 (502)
.+.+|+.++++++. ++...-..+. .|++|+.|.+.++. +++..-. ....+++|++|++++|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34556666666655 3332222222 25666666665554 3332222 223456666666666554
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.03 E-value=0.15 Score=27.87 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=13.7
Q ss_pred CCCCCEEEcccCcCcccCChhhh
Q 037195 71 LTRLSYLGLGGNQLIGSIPSSIF 93 (502)
Q Consensus 71 l~~L~~L~L~~n~l~~~~p~~~~ 93 (502)
+++|++|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777766 5565443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.03 E-value=0.15 Score=27.87 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=13.7
Q ss_pred CCCCCEEEcccCcCcccCChhhh
Q 037195 71 LTRLSYLGLGGNQLIGSIPSSIF 93 (502)
Q Consensus 71 l~~L~~L~L~~n~l~~~~p~~~~ 93 (502)
+++|++|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777766 5565443
No 77
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=91.32 E-value=0.2 Score=40.70 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=18.2
Q ss_pred heehhhhhHHHHHHHHHHhhhhhhcCCCC
Q 037195 474 WKLAKLGYASGVVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
.+.+.+|++++++++++++++++|+|+||
T Consensus 51 VIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 34555666666677666666666666654
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.13 E-value=0.12 Score=27.62 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=9.1
Q ss_pred cccCeeeccCCcccccchh
Q 037195 342 TTFATIDLSSNRFQGEILE 360 (502)
Q Consensus 342 ~~L~~L~Ls~n~l~~~~~~ 360 (502)
++|++|+|++|++++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4555666666665544433
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.11 E-value=0.0043 Score=54.02 Aligned_cols=85 Identities=21% Similarity=0.139 Sum_probs=67.6
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.+...+.||++.|.+. .+-..|..++.|..||++.|.+. ..|+.++.+..++.+++..|..+ ..|.++++.
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~------ 110 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE------ 110 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc------
Confidence 6788888999988775 44455777888888899988887 68888888899999999888877 788888877
Q ss_pred cccchhhhhhccCcccEEECCCCcCc
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLT 127 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 127 (502)
+.++++++-++.+.
T Consensus 111 ------------~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 ------------PHPKKNEQKKTEFF 124 (326)
T ss_pred ------------CCcchhhhccCcch
Confidence 77777777766543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.99 E-value=0.32 Score=26.56 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=6.0
Q ss_pred CCCEEeCcCCcCC
Q 037195 367 SLKSLNISHNNLT 379 (502)
Q Consensus 367 ~L~~L~L~~N~l~ 379 (502)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.99 E-value=0.32 Score=26.56 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=6.0
Q ss_pred CCCEEeCcCCcCC
Q 037195 367 SLKSLNISHNNLT 379 (502)
Q Consensus 367 ~L~~L~L~~N~l~ 379 (502)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.35 E-value=0.0012 Score=66.01 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=19.1
Q ss_pred ccEEECCCCcCcccCC-------CCCCCCceEeCcCCcCC
Q 037195 116 LIYLELSRNFLTNIDH-------LPWKNLEYLHLDSNLLQ 148 (502)
Q Consensus 116 L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~l~ 148 (502)
+.++++.+|.+..... .....|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5666677666655433 23445666666666655
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.68 E-value=0.17 Score=51.46 Aligned_cols=136 Identities=21% Similarity=0.176 Sum_probs=79.4
Q ss_pred CCCCCcEEEccCCc-cCcc-CCcccCCCCCCCEEEccCC-cCcccCC--CCCCCCCCCCccEEEccCcc-CCCCCchhhh
Q 037195 257 NCRHLEVIDVGNNQ-INDT-FPHWLDVLPELQVLTLRSN-RFRGPID--DTKTRVPFPKLRIIDLSYNR-FTGVLPIWYL 330 (502)
Q Consensus 257 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 330 (502)
.++.|+.+.+.++. +... .......++.|+.|+++++ ......+ .......+++|+.++++++. ++...-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~--- 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS--- 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH---
Confidence 46888888888773 3321 2344567889999999873 2221111 01122346788888888877 3322111
Q ss_pred cCCchhHHHHhcccCeeeccCCc-ccccchhh-hcCCCCCCEEeCcCCcCC-CC-CchhccCCCCCCEEeCCCC
Q 037195 331 HGNDIQMERILTTFATIDLSSNR-FQGEILEV-LGKLNSLKSLNISHNNLT-GG-IPSSLRNLTELESLDLSSN 400 (502)
Q Consensus 331 ~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~-~~-~p~~l~~l~~L~~L~ls~n 400 (502)
.....+++|+.|.+.++. +++..... ...++.|++|+++++... .. +......+++|+.|.+...
T Consensus 263 -----~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 263 -----ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred -----HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 111237889999888787 56543333 356788999999887553 11 2233444666666554433
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.59 E-value=0.0056 Score=61.23 Aligned_cols=92 Identities=26% Similarity=0.312 Sum_probs=51.1
Q ss_pred CCCccEEEccCccCCCCCchhhhcCCchhHHHHhcc-cCeeeccCCccccc----chhhhcCC-CCCCEEeCcCCcCCCC
Q 037195 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTT-FATIDLSSNRFQGE----ILEVLGKL-NSLKSLNISHNNLTGG 381 (502)
Q Consensus 308 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~ 381 (502)
..++++|.+.+|.++......+ .......+. +..+++.+|++.+. ..+.+..+ ..++.++++.|.|+..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l-----~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALL-----DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHH-----HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 4466667776666652111100 011122333 55577777777643 22334444 5667788888877643
Q ss_pred C----chhccCCCCCCEEeCCCCCCCc
Q 037195 382 I----PSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 382 ~----p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
- ...+...+.++.+.+++|++..
T Consensus 278 ~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 278 GVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 3345566677888888887763
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.00 E-value=0.091 Score=45.08 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCc
Q 037195 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFR 296 (502)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (502)
.++.+|-++..|.....+.+..+++++.|.+.+|.-.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 4677777777777766677777788888877777644
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=0.13 Score=44.22 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCcc-CCcccC-CCCCCCEEEcccCc-Cc
Q 037195 24 TQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGK-IPDIFT-NLTRLSYLGLGGNQ-LI 85 (502)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~-~l~~L~~L~L~~n~-l~ 85 (502)
..++.+|.++..|..+--+.+.+++.++.|.+.+|+-.+. .-+.++ -.++|+.|++++|. |+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 4578899999988877666788888999999988864321 111222 35799999999886 44
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.70 E-value=8.8 Score=37.78 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=17.1
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCCccEEEccC
Q 037195 284 ELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSY 318 (502)
Q Consensus 284 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~ 318 (502)
.+++|.+.+|...+..........-++.+.+.+..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccc
Confidence 35666666666555443333333344555555443
No 88
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.58 E-value=0.95 Score=35.74 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=10.7
Q ss_pred ehhhhhHHHHHHHHHHhhhhhhcCCC
Q 037195 476 LAKLGYASGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
++++|+++|++. +++++.++++|||
T Consensus 68 ~Ii~gv~aGvIg-~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIG-IILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHH-HHHHHHHHHHHHh
Confidence 444454444433 3333344444444
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.66 E-value=1.6 Score=26.14 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHhhhh-hhcCC
Q 037195 477 AKLGYASGVVIGLSIGYMA-FVTGR 500 (502)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~-~~~~~ 500 (502)
+++|+.+++++.+++++++ +++||
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444444444444443 34444
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.18 E-value=1.6 Score=23.89 Aligned_cols=13 Identities=69% Similarity=0.894 Sum_probs=6.6
Q ss_pred CCCEEeCcCCcCC
Q 037195 367 SLKSLNISHNNLT 379 (502)
Q Consensus 367 ~L~~L~L~~N~l~ 379 (502)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.01 E-value=3.1 Score=22.78 Aligned_cols=15 Identities=67% Similarity=0.882 Sum_probs=11.8
Q ss_pred CCCCCEEeCCCCCCC
Q 037195 389 LTELESLDLSSNKLA 403 (502)
Q Consensus 389 l~~L~~L~ls~n~l~ 403 (502)
+.+|+.|++++|+|.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888888888886
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.57 E-value=3.7 Score=22.84 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=7.1
Q ss_pred CCCEEeCcCCcCC
Q 037195 367 SLKSLNISHNNLT 379 (502)
Q Consensus 367 ~L~~L~L~~N~l~ 379 (502)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 93
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=70.53 E-value=1.5 Score=29.81 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhc
Q 037195 478 KLGYASGVVIGLSIGYMAFVT 498 (502)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~ 498 (502)
+.|++++++++++++++++.|
T Consensus 15 IaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 15 IAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=64.55 E-value=2.4 Score=32.10 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 037195 485 VVIGLSI 491 (502)
Q Consensus 485 ~~~~~~~ 491 (502)
++|++++
T Consensus 77 ~~v~~lv 83 (96)
T PTZ00382 77 AVVGGLV 83 (96)
T ss_pred hHHHHHH
Confidence 3343333
No 95
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=63.91 E-value=5.3 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhcCCCC
Q 037195 477 AKLGYASGVVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
+.+.+++++.+.+++..+++|.+|||
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkr 60 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKR 60 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566666666666777776664
No 96
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=63.74 E-value=5.6 Score=37.70 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=4.3
Q ss_pred CCEEeCCCC
Q 037195 392 LESLDLSSN 400 (502)
Q Consensus 392 L~~L~ls~n 400 (502)
=+.+.+..+
T Consensus 230 eq~i~lt~~ 238 (306)
T PF01299_consen 230 EQSINLTDN 238 (306)
T ss_pred CCEEEecCC
Confidence 345555433
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.71 E-value=4.7 Score=40.42 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=16.2
Q ss_pred CCCCcEEEccCCccCcc--CCcccCCCCCCCEEEccCC
Q 037195 258 CRHLEVIDVGNNQINDT--FPHWLDVLPELQVLTLRSN 293 (502)
Q Consensus 258 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n 293 (502)
.+.+..+++++|++... +...-...|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555666554321 1111123355555555555
No 98
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=53.46 E-value=9 Score=30.09 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhcCCC
Q 037195 483 SGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~ 501 (502)
+++|++++.+++++++.||
T Consensus 88 v~lVl~llsg~lv~rrcrr 106 (129)
T PF12191_consen 88 VVLVLALLSGFLVWRRCRR 106 (129)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 3344444444555544444
No 99
>PTZ00370 STEVOR; Provisional
Probab=52.14 E-value=9.7 Score=34.77 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.5
Q ss_pred HhhhhhhcCCCC
Q 037195 491 IGYMAFVTGRPQ 502 (502)
Q Consensus 491 ~~~~~~~~~~~~ 502 (502)
+++-+|.+||||
T Consensus 272 iilYiwlyrrRK 283 (296)
T PTZ00370 272 IILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHhhc
Confidence 333445555553
No 100
>PRK14762 membrane protein; Provisional
Probab=52.11 E-value=23 Score=18.90 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=13.5
Q ss_pred ehhhhhHHHHHHHHHHhhhhh
Q 037195 476 LAKLGYASGVVIGLSIGYMAF 496 (502)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~ 496 (502)
.+.|.++..+++|+.++..++
T Consensus 3 i~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 3 IILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777665544
No 101
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=51.99 E-value=9.7 Score=34.68 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.5
Q ss_pred HhhhhhhcCCCC
Q 037195 491 IGYMAFVTGRPQ 502 (502)
Q Consensus 491 ~~~~~~~~~~~~ 502 (502)
+++-+|.+||||
T Consensus 276 iiLYiWlyrrRK 287 (295)
T TIGR01478 276 IILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHhhc
Confidence 333444555553
No 102
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=51.98 E-value=12 Score=29.39 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCCC
Q 037195 478 KLGYASGVVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
++++++++++..++..+..++||||
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeeccc
Confidence 3455555555555555555666654
No 103
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.54 E-value=11 Score=37.83 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=17.4
Q ss_pred hcccCeeeccCC--cccccchhhhc--CCCCCCEEeCcCCcCC
Q 037195 341 LTTFATIDLSSN--RFQGEILEVLG--KLNSLKSLNISHNNLT 379 (502)
Q Consensus 341 ~~~L~~L~Ls~n--~l~~~~~~~~~--~l~~L~~L~L~~N~l~ 379 (502)
.|+|..|+|++| .+... .++. ....|++|-+.+|.+.
T Consensus 243 apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 455666666665 22211 1111 1234556666666654
No 104
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=47.88 E-value=20 Score=19.62 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.4
Q ss_pred HHHHHhhhhhhcCCC
Q 037195 487 IGLSIGYMAFVTGRP 501 (502)
Q Consensus 487 ~~~~~~~~~~~~~~~ 501 (502)
|..+++++++..||+
T Consensus 11 I~all~i~~i~~rrK 25 (26)
T TIGR03024 11 IIALLAIIVILRRRK 25 (26)
T ss_pred HHHHHHHHHHHhhcc
Confidence 333344444444443
No 105
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.74 E-value=19 Score=23.24 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhhhhcCC
Q 037195 482 ASGVVIGLSIGYMAFVTGR 500 (502)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~ 500 (502)
+..++++++++++++.+++
T Consensus 14 ~~v~~~~~F~gi~~w~~~~ 32 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRP 32 (49)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3334444444554444443
No 106
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=45.14 E-value=5.6 Score=30.49 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=0.8
Q ss_pred hhhHHHHHHHHHHhhhhhhcCC
Q 037195 479 LGYASGVVIGLSIGYMAFVTGR 500 (502)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~ 500 (502)
+|+.++++..++++.|++++||
T Consensus 29 IGiL~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp SS--------------------
T ss_pred ceeHHHHHHHHHHHhheeeeec
Confidence 3444444444444555555555
No 107
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=43.64 E-value=12 Score=27.54 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=13.0
Q ss_pred hheehhhhhHHHHHHHHHHhhhhhhcCCC
Q 037195 473 DWKLAKLGYASGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
+|.++..|. +.+++.++++++++++.|+
T Consensus 41 yWpyLA~GG-G~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGG-GLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhccc-hhhhHHHHHHHHHHhhhhh
Confidence 666655553 2233333344444555444
No 108
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=41.34 E-value=12 Score=34.93 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=2.8
Q ss_pred hhhhcCC
Q 037195 494 MAFVTGR 500 (502)
Q Consensus 494 ~~~~~~~ 500 (502)
.++++||
T Consensus 277 LILRYRR 283 (299)
T PF02009_consen 277 LILRYRR 283 (299)
T ss_pred HHHHHHH
Confidence 3334444
No 109
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.62 E-value=23 Score=19.05 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=10.3
Q ss_pred CCCCCEEeCCCCC
Q 037195 389 LTELESLDLSSNK 401 (502)
Q Consensus 389 l~~L~~L~ls~n~ 401 (502)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888886
No 110
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.60 E-value=22 Score=43.23 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.1
Q ss_pred eccCCcccccchhhhcCCCCCCEEeCcCCcCC
Q 037195 348 DLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379 (502)
Q Consensus 348 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 379 (502)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888888999999999999999886
No 111
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=37.03 E-value=36 Score=19.67 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=3.9
Q ss_pred hhhhhhcCCC
Q 037195 492 GYMAFVTGRP 501 (502)
Q Consensus 492 ~~~~~~~~~~ 501 (502)
+.+++.+||+
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 3333444443
No 112
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.22 E-value=16 Score=27.91 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=4.2
Q ss_pred hhhhhcCCC
Q 037195 493 YMAFVTGRP 501 (502)
Q Consensus 493 ~~~~~~~~~ 501 (502)
.+++.|.|+
T Consensus 83 YFVILRer~ 91 (101)
T PF06024_consen 83 YFVILRERQ 91 (101)
T ss_pred EEEEEeccc
Confidence 344455544
No 113
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=35.51 E-value=19 Score=35.47 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhhcC
Q 037195 477 AKLGYASGVVIGLSIGYMAFVTG 499 (502)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~ 499 (502)
+.++|++++||+.+|+++.||.-
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhhee
Confidence 34455566677777777655543
No 114
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=33.52 E-value=31 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=13.9
Q ss_pred hheehhhhhHHHHHHHHHH-hhhhhhcCC
Q 037195 473 DWKLAKLGYASGVVIGLSI-GYMAFVTGR 500 (502)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 500 (502)
.|.+++++.+++++.+.+. +.++++.|.
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~r~ 43 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCHRF 43 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 4555555544444444433 455555543
No 115
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=33.29 E-value=22 Score=30.85 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=9.0
Q ss_pred heehhhhhHHHHHHHHHHhh
Q 037195 474 WKLAKLGYASGVVIGLSIGY 493 (502)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (502)
+.++++++-+++++++++++
T Consensus 157 ~~~laI~lPvvv~~~~~~~~ 176 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMY 176 (189)
T ss_pred ceeEEEEccHHHHHHHHHHH
Confidence 34444555444444444433
No 116
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=33.20 E-value=58 Score=28.54 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=15.0
Q ss_pred eehhhhhHHHHHHHHHHhhhhhhc
Q 037195 475 KLAKLGYASGVVIGLSIGYMAFVT 498 (502)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
+.++.|++.+++|.++++++-+|+
T Consensus 41 iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 41 IAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeecchhhhHHHHHHHHHHHHHh
Confidence 444555666666666667777666
No 117
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.81 E-value=32 Score=32.76 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.5
Q ss_pred hhhhcCCC
Q 037195 494 MAFVTGRP 501 (502)
Q Consensus 494 ~~~~~~~~ 501 (502)
++.++||+
T Consensus 331 LILRYRRK 338 (353)
T TIGR01477 331 LILRYRRK 338 (353)
T ss_pred HHHHhhhc
Confidence 33444444
No 118
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.66 E-value=37 Score=41.55 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=24.9
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccc
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQG 356 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 356 (502)
||++|+|+...+..| ..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F---------~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGIC---------ANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHh---------ccCCCceEEEeeCCcccc
Confidence 588999985544333 448899999999998764
No 119
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=28.32 E-value=43 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=16.0
Q ss_pred heehhhhhHHHHHHHHHHhhhhhhcCCCC
Q 037195 474 WKLAKLGYASGVVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
|..-.+|++.+++++++++.+++.++|+|
T Consensus 180 w~pn~lgiG~v~I~~l~~~~~~l~~~r~~ 208 (209)
T PF11353_consen 180 WVPNPLGIGTVLIVLLILLGFLLRRRRLP 208 (209)
T ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44445566565556655555555555543
No 120
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=28.30 E-value=31 Score=33.18 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=11.2
Q ss_pred ehhhhhH--HHHHHHHHHhhhhhhcCCC
Q 037195 476 LAKLGYA--SGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 476 ~~~~~~~--~~~~~~~~~~~~~~~~~~~ 501 (502)
++++++. ++|++...++++++++|||
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 3444443 3333333334455555554
No 121
>TIGR03370 PEPCTERM_Roseo variant PEP-CTERM putative exosortase signal, Roseobacter type. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (PubMed:16930487). It is predicted to interact with a putative transpeptidase we designate exosortase. Most examples of this signal are recognized by model TIGR02595, but some unusual clades require different models. This model describes a variant with conserved motif VPLPA, rather than VPEP. This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Probab=27.80 E-value=47 Score=18.19 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.9
Q ss_pred HhhhhhhcCCC
Q 037195 491 IGYMAFVTGRP 501 (502)
Q Consensus 491 ~~~~~~~~~~~ 501 (502)
++.+.+.+|||
T Consensus 14 Lggl~~~rRRr 24 (26)
T TIGR03370 14 LGGLGAMRRRR 24 (26)
T ss_pred HHHHHHHHHhh
Confidence 33344445554
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.53 E-value=26 Score=24.04 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhhh
Q 037195 482 ASGVVIGLSIGYMA 495 (502)
Q Consensus 482 ~~~~~~~~~~~~~~ 495 (502)
++++++|+++++++
T Consensus 4 ilali~G~~~Gff~ 17 (64)
T PF03672_consen 4 ILALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444554444443
No 123
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.22 E-value=64 Score=18.74 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhhhcCCCC
Q 037195 485 VVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~ 502 (502)
+++|+++.+++-+.++||
T Consensus 18 ~iagIi~s~iv~w~~~RK 35 (35)
T PF13940_consen 18 IIAGIIASLIVGWLRNRK 35 (35)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 444545555544555554
No 124
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=26.08 E-value=22 Score=31.88 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=0.0
Q ss_pred chheehhhhhHHHHHHHHHHhhhhhhcCCC
Q 037195 472 FDWKLAKLGYASGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
..|..+++...+.+|+|+++++++|.++.|
T Consensus 213 lq~~~iAL~sl~SLVIGFvlG~l~WKkkq~ 242 (273)
T PF02404_consen 213 LQWPAIALPSLFSLVIGFVLGALYWKKKQR 242 (273)
T ss_dssp ------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345555455556678888888876655544
No 125
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=25.83 E-value=72 Score=32.97 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=7.9
Q ss_pred cchheehhhhhHHHHH
Q 037195 471 WFDWKLAKLGYASGVV 486 (502)
Q Consensus 471 ~~~~~~~~~~~~~~~~ 486 (502)
...|+++++.+.++++
T Consensus 267 ~NlWII~gVlvPv~vV 282 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVV 282 (684)
T ss_pred CCeEEEehHhHHHHHH
Confidence 3467666554433333
No 126
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.81 E-value=26 Score=27.85 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=16.9
Q ss_pred ehhhhhHHHHHHHHHHhhhhhhcCC
Q 037195 476 LAKLGYASGVVIGLSIGYMAFVTGR 500 (502)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (502)
..+.++++|+++|++.+++++.+.-
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHH
Confidence 3567777777788777776666543
No 127
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=24.92 E-value=56 Score=24.38 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhhhhhcC
Q 037195 481 YASGVVIGLSIGYMAFVTG 499 (502)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~ 499 (502)
+.+++.|++++++++++|+
T Consensus 26 asVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 26 ASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3455667777777777644
No 128
>PTZ00046 rifin; Provisional
Probab=24.75 E-value=48 Score=31.71 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.4
Q ss_pred hhhhcCCC
Q 037195 494 MAFVTGRP 501 (502)
Q Consensus 494 ~~~~~~~~ 501 (502)
++.++||+
T Consensus 336 LILRYRRK 343 (358)
T PTZ00046 336 LILRYRRK 343 (358)
T ss_pred HHHHhhhc
Confidence 33444444
No 129
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.41 E-value=1e+02 Score=27.02 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhhcCC
Q 037195 485 VVIGLSIGYMAFVTGR 500 (502)
Q Consensus 485 ~~~~~~~~~~~~~~~~ 500 (502)
+++++++++.++++.|
T Consensus 112 lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQR 127 (202)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4444444443444433
No 130
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.74 E-value=31 Score=23.92 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHHhh
Q 037195 478 KLGYASGVVIGLSIGY 493 (502)
Q Consensus 478 ~~~~~~~~~~~~~~~~ 493 (502)
.+++++|++++.++..
T Consensus 25 l~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 131
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=23.56 E-value=50 Score=27.97 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHhh-hhhhcCCC
Q 037195 477 AKLGYASGVVIGLSIGY-MAFVTGRP 501 (502)
Q Consensus 477 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 501 (502)
++.+|+.+++|+++-++ -++.+.||
T Consensus 116 ~IaGIvsav~valvGAvsSyiaYqkK 141 (169)
T PF12301_consen 116 TIAGIVSAVVVALVGAVSSYIAYQKK 141 (169)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555544333 33344443
No 132
>PRK10132 hypothetical protein; Provisional
Probab=23.38 E-value=69 Score=24.86 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhh
Q 037195 483 SGVVIGLSIGYM 494 (502)
Q Consensus 483 ~~~~~~~~~~~~ 494 (502)
++..||++++++
T Consensus 92 iaagvG~llG~L 103 (108)
T PRK10132 92 TAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 133
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=23.15 E-value=86 Score=23.11 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCC
Q 037195 478 KLGYASGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
.++.+.+++++..+++.++.+|++
T Consensus 56 ~ias~la~lv~t~~G~g~y~~~kk 79 (85)
T TIGR01495 56 SIASGLALLVGAGVGLGYYYKKKN 79 (85)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccc
Confidence 444455666777777777666654
No 134
>PHA03265 envelope glycoprotein D; Provisional
Probab=21.26 E-value=52 Score=31.07 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.5
Q ss_pred hhcCCC
Q 037195 496 FVTGRP 501 (502)
Q Consensus 496 ~~~~~~ 501 (502)
+++|||
T Consensus 370 ~~~rr~ 375 (402)
T PHA03265 370 VCLRRK 375 (402)
T ss_pred HHhhhh
Confidence 344443
No 135
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=20.98 E-value=37 Score=27.97 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=18.0
Q ss_pred heehhhhhHHHHHHHHHHhhhhhhc
Q 037195 474 WKLAKLGYASGVVIGLSIGYMAFVT 498 (502)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
.+-+++|+++|+.++++++++++++
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhhe
Confidence 3466788888888888877665554
No 136
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.79 E-value=73 Score=29.69 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhhhcCCC
Q 037195 483 SGVVIGLSIGYMAFVTGRP 501 (502)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~ 501 (502)
++++++++-+++.+.+|||
T Consensus 240 ~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 240 TVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3333333333344444443
No 137
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.61 E-value=65 Score=26.58 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCC
Q 037195 478 KLGYASGVVIGLSIGYMAFVTGR 500 (502)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~ 500 (502)
++++++++++++++++.+++|+-
T Consensus 121 i~~~i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIYVVLRKV 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555543
No 138
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.45 E-value=1.1e+02 Score=30.06 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=2.6
Q ss_pred hhhhHHH
Q 037195 478 KLGYASG 484 (502)
Q Consensus 478 ~~~~~~~ 484 (502)
.++++++
T Consensus 395 s~~~~~~ 401 (492)
T PHA03286 395 SMAAGAI 401 (492)
T ss_pred HHHHHHH
Confidence 3333333
Done!