Query 037195
Match_columns 502
No_of_seqs 372 out of 4351
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-55 2E-59 465.7 32.4 437 1-452 202-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.2E-48 1.1E-52 413.7 32.2 386 2-409 250-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.2E-44 4.2E-49 377.5 36.3 420 1-443 35-564 (606)
4 3j0a_A TOLL-like receptor 5; m 100.0 7.8E-45 2.7E-49 391.5 32.9 126 1-129 26-163 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-43 2.1E-47 369.6 41.0 432 1-444 51-627 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-43 4.8E-48 369.5 33.7 413 1-444 34-563 (606)
7 4eco_A Uncharacterized protein 100.0 2.4E-43 8.1E-48 367.8 26.3 369 1-411 83-586 (636)
8 3t6q_A CD180 antigen; protein- 100.0 3.8E-42 1.3E-46 358.7 34.2 419 2-436 15-523 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-41 1.8E-45 354.8 37.0 428 1-433 27-580 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-41 2E-45 349.7 35.8 382 1-407 58-562 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-41 8.3E-46 364.3 33.7 412 1-443 50-564 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 7.1E-42 2.4E-46 354.2 28.3 413 1-443 30-535 (570)
13 4eco_A Uncharacterized protein 100.0 8.3E-42 2.8E-46 356.2 27.5 357 10-404 194-601 (636)
14 4ecn_A Leucine-rich repeat pro 100.0 6.7E-41 2.3E-45 355.1 32.7 368 1-410 325-825 (876)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.3E-41 3.2E-45 344.1 25.7 406 1-443 28-514 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 3.4E-40 1.2E-44 349.7 29.4 361 15-411 440-848 (876)
17 2z63_A TOLL-like receptor 4, v 100.0 1.3E-39 4.6E-44 337.1 32.2 385 1-408 54-536 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-40 7.4E-45 338.9 24.4 354 2-403 3-457 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 7.2E-40 2.4E-44 335.1 27.2 375 1-407 23-485 (520)
20 3v47_A TOLL-like receptor 5B a 100.0 5E-39 1.7E-43 323.3 31.9 364 2-407 13-412 (455)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-39 1.8E-43 331.4 29.9 152 2-178 34-193 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 1.6E-38 5.3E-43 319.8 28.6 353 1-383 32-412 (455)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-38 3.7E-43 328.7 23.0 375 1-407 52-514 (549)
24 4g8a_A TOLL-like receptor 4; l 100.0 3E-37 1E-41 323.7 33.4 166 255-443 416-584 (635)
25 1o6v_A Internalin A; bacterial 100.0 1.4E-36 4.7E-41 305.9 34.0 339 1-404 48-389 (466)
26 4g8a_A TOLL-like receptor 4; l 100.0 7.9E-36 2.7E-40 312.8 32.4 387 1-406 54-583 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-36 1E-40 310.8 28.7 358 22-417 29-500 (562)
28 1jl5_A Outer protein YOPM; leu 100.0 1.5E-36 5.3E-41 303.0 23.5 354 1-413 13-382 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 2.3E-35 7.8E-40 298.3 26.7 319 2-404 14-334 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 4.7E-35 1.6E-39 292.5 27.8 343 15-412 34-396 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 4.3E-35 1.5E-39 296.3 26.1 312 26-418 13-324 (477)
32 3o6n_A APL1; leucine-rich repe 100.0 7.8E-34 2.7E-38 279.4 30.6 306 23-406 44-355 (390)
33 1o6v_A Internalin A; bacterial 100.0 2E-33 7E-38 282.8 33.2 333 22-418 44-379 (466)
34 3oja_B Anopheles plasmodium-re 100.0 1.9E-33 6.4E-38 291.5 30.8 329 23-443 50-384 (597)
35 4fmz_A Internalin; leucine ric 100.0 5.7E-33 2E-37 268.9 29.5 303 22-403 42-346 (347)
36 1jl5_A Outer protein YOPM; leu 100.0 5.9E-32 2E-36 269.9 31.0 329 1-413 73-421 (454)
37 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-32 2.1E-36 269.9 28.4 306 35-404 29-353 (457)
38 4fmz_A Internalin; leucine ric 100.0 3.4E-31 1.2E-35 256.4 29.8 298 1-379 46-346 (347)
39 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-31 1.1E-35 254.9 25.9 300 13-401 17-331 (332)
40 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-32 6.5E-37 260.6 16.6 258 156-448 50-312 (313)
41 1xku_A Decorin; proteoglycan, 100.0 1.7E-30 5.7E-35 249.6 28.9 291 25-401 32-330 (330)
42 3o6n_A APL1; leucine-rich repe 100.0 3.5E-31 1.2E-35 260.5 24.5 285 46-405 43-333 (390)
43 3oja_B Anopheles plasmodium-re 100.0 3.9E-31 1.3E-35 274.1 24.2 286 46-406 49-340 (597)
44 1xku_A Decorin; proteoglycan, 100.0 1.6E-30 5.4E-35 249.8 26.2 293 1-377 33-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4E-35 250.8 23.7 292 1-377 35-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-31 5E-36 254.5 17.0 249 24-353 50-302 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-34 1.1E-38 288.7 -2.9 365 1-405 5-413 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 6E-32 2.1E-36 272.2 -2.6 365 1-411 30-448 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 7.9E-29 2.7E-33 240.2 16.5 282 22-407 29-318 (353)
50 2z66_A Variable lymphocyte rec 100.0 3.1E-27 1.1E-31 224.3 22.7 248 139-406 11-264 (306)
51 2z66_A Variable lymphocyte rec 100.0 2.1E-27 7.2E-32 225.5 21.5 283 3-364 11-296 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 2.4E-27 8.3E-32 229.7 18.6 268 3-326 35-318 (353)
53 3g06_A SSPH2 (leucine-rich rep 100.0 4.9E-26 1.7E-30 233.9 29.3 269 24-414 40-308 (622)
54 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-27 1.6E-31 220.7 19.0 77 3-83 15-91 (285)
55 4fcg_A Uncharacterized protein 99.9 7.6E-27 2.6E-31 223.2 19.0 87 22-129 79-165 (328)
56 4fcg_A Uncharacterized protein 99.9 1.3E-26 4.3E-31 221.7 20.0 236 46-403 79-314 (328)
57 3g06_A SSPH2 (leucine-rich rep 99.9 6.9E-26 2.4E-30 232.8 26.2 133 1-169 42-174 (622)
58 3zyi_A Leucine-rich repeat-con 99.9 6.2E-26 2.1E-30 227.3 25.1 247 26-326 56-307 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 7E-26 2.4E-30 226.1 25.0 246 26-325 45-295 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1E-25 3.4E-30 225.8 24.8 247 138-405 57-305 (452)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-25 4E-30 211.1 23.3 227 139-407 15-242 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 1.7E-25 5.7E-30 223.3 24.4 247 138-405 46-294 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-27 8.7E-32 225.8 7.7 220 45-322 31-250 (317)
64 3ogk_B Coronatine-insensitive 99.9 1.7E-28 5.8E-33 255.0 -1.8 365 22-405 110-528 (592)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-27 7.2E-32 226.4 4.9 253 3-292 14-271 (317)
66 1wwl_A Monocyte differentiatio 99.9 1.9E-27 6.5E-32 226.1 2.8 208 157-404 96-310 (312)
67 1wwl_A Monocyte differentiatio 99.9 1.7E-25 5.7E-30 212.7 10.8 136 23-194 42-187 (312)
68 3oja_A Leucine-rich immune mol 99.9 1.7E-25 5.8E-30 225.4 9.4 216 25-322 35-250 (487)
69 3oja_A Leucine-rich immune mol 99.9 3.9E-25 1.3E-29 222.7 11.3 229 156-416 34-264 (487)
70 3ogk_B Coronatine-insensitive 99.9 1.4E-26 4.7E-31 240.6 0.0 388 1-400 114-548 (592)
71 2z62_A TOLL-like receptor 4, v 99.9 2.4E-23 8.1E-28 194.4 21.8 210 155-407 27-241 (276)
72 2z62_A TOLL-like receptor 4, v 99.9 1.7E-22 5.9E-27 188.5 22.3 226 4-298 12-239 (276)
73 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 8.8E-27 186.6 22.0 205 181-406 17-221 (270)
74 3rfs_A Internalin B, repeat mo 99.9 2.4E-23 8.2E-28 193.7 13.1 165 231-413 81-245 (272)
75 2p1m_B Transport inhibitor res 99.9 1.2E-25 4.1E-30 233.6 -3.0 138 258-404 371-520 (594)
76 2o6q_A Variable lymphocyte rec 99.9 7.3E-22 2.5E-26 183.5 22.8 205 205-443 18-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 8.8E-22 3E-26 184.5 22.2 200 136-405 11-210 (290)
78 1p9a_G Platelet glycoprotein I 99.9 9.4E-22 3.2E-26 184.3 19.9 181 235-442 31-211 (290)
79 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4.2E-26 179.9 20.3 160 235-405 35-194 (251)
80 3rfs_A Internalin B, repeat mo 99.9 1.5E-22 5E-27 188.4 13.3 144 230-391 104-247 (272)
81 2p1m_B Transport inhibitor res 99.9 2.3E-24 7.9E-29 223.9 0.2 381 3-417 47-509 (594)
82 2ca6_A RAN GTPase-activating p 99.9 4.7E-24 1.6E-28 209.2 1.3 68 340-407 242-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 2E-23 7E-28 202.6 5.7 90 3-93 2-101 (362)
84 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.9E-27 195.5 7.9 64 231-294 190-258 (336)
85 2ca6_A RAN GTPase-activating p 99.9 9.7E-23 3.3E-27 199.8 6.3 120 257-383 185-320 (386)
86 4glp_A Monocyte differentiatio 99.9 2.3E-21 8E-26 183.9 14.5 226 23-322 63-307 (310)
87 2xwt_C Thyrotropin receptor; s 99.9 5.4E-21 1.8E-25 174.3 16.0 199 154-400 29-236 (239)
88 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 196.0 5.0 260 141-409 4-303 (362)
89 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.6E-25 172.3 15.4 95 13-129 24-120 (239)
90 4glp_A Monocyte differentiatio 99.8 5E-21 1.7E-25 181.6 11.8 164 232-404 114-286 (310)
91 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 7.7E-25 176.7 16.2 191 156-404 41-231 (308)
92 1h6u_A Internalin H; cell adhe 99.8 5.9E-20 2E-24 173.8 17.9 60 22-85 39-98 (308)
93 2ast_B S-phase kinase-associat 99.8 5.9E-22 2E-26 190.5 4.1 159 231-400 114-282 (336)
94 2o6s_A Variable lymphocyte rec 99.8 2.2E-19 7.4E-24 159.9 17.2 177 140-365 12-188 (208)
95 3m19_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 160.4 20.1 159 155-323 34-193 (251)
96 3cvr_A Invasion plasmid antige 99.8 3.1E-19 1.1E-23 181.2 17.1 149 235-415 100-255 (571)
97 2o6s_A Variable lymphocyte rec 99.8 2.2E-19 7.5E-24 159.9 14.1 162 235-414 28-189 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.7E-18 5.9E-23 167.0 19.9 240 2-319 12-256 (350)
99 4ay9_X Follicle-stimulating ho 99.8 2.3E-18 7.8E-23 166.1 18.4 245 138-405 12-261 (350)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-18 7.7E-23 154.4 15.9 156 238-407 14-170 (220)
101 3cvr_A Invasion plasmid antige 99.8 3.9E-18 1.3E-22 173.1 18.6 194 25-282 60-253 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 3.3E-18 1.1E-22 153.4 16.1 154 238-405 14-167 (220)
103 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 150.7 17.4 156 237-407 21-176 (229)
104 2xot_A Amphoterin-induced prot 99.8 3.9E-18 1.3E-22 165.2 13.6 179 205-405 20-204 (361)
105 2xot_A Amphoterin-induced prot 99.8 5E-18 1.7E-22 164.4 14.2 179 183-379 21-202 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-17 1E-21 147.1 15.9 154 2-195 14-168 (220)
107 2v9t_B SLIT homolog 2 protein 99.7 3.3E-17 1.1E-21 146.8 16.1 151 2-193 14-165 (220)
108 1h6t_A Internalin B; cell adhe 99.7 2.3E-17 8E-22 154.5 15.1 152 231-405 64-215 (291)
109 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.6E-22 145.4 13.1 154 232-404 41-195 (197)
110 1m9s_A Internalin B; cell inva 99.7 4.5E-17 1.5E-21 167.2 16.9 189 26-298 23-212 (605)
111 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.2E-21 143.0 17.5 155 205-382 21-175 (229)
112 1h6t_A Internalin B; cell adhe 99.7 1.3E-16 4.4E-21 149.5 15.6 168 22-217 44-214 (291)
113 1xeu_A Internalin C; cellular 99.7 3.4E-17 1.2E-21 151.0 10.8 152 230-405 36-187 (263)
114 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.6E-21 164.5 15.3 148 234-404 64-211 (605)
115 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.2E-21 139.5 13.6 149 22-194 42-195 (197)
116 1dce_A Protein (RAB geranylger 99.7 1E-19 3.4E-24 185.8 -8.9 70 228-299 479-549 (567)
117 2ell_A Acidic leucine-rich nuc 99.7 3.8E-16 1.3E-20 133.7 12.8 136 259-408 24-164 (168)
118 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.4E-21 147.1 9.2 145 22-216 39-185 (263)
119 1w8a_A SLIT protein; signaling 99.7 4.3E-16 1.5E-20 136.4 11.0 132 238-407 11-143 (192)
120 1w8a_A SLIT protein; signaling 99.7 7.4E-16 2.5E-20 134.9 12.5 120 286-418 11-130 (192)
121 4b8c_D Glucose-repressible alc 99.6 1E-16 3.5E-21 168.7 7.2 157 228-403 240-404 (727)
122 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 128.1 11.2 128 259-399 17-149 (149)
123 1dce_A Protein (RAB geranylger 99.6 4.6E-18 1.6E-22 173.5 -6.0 121 260-396 442-566 (567)
124 4b8c_D Glucose-repressible alc 99.6 3.4E-16 1.2E-20 164.7 6.0 160 2-204 176-340 (727)
125 2ell_A Acidic leucine-rich nuc 99.6 2E-15 7E-20 129.1 9.9 138 234-385 23-165 (168)
126 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.3E-20 145.0 8.9 102 282-396 225-327 (329)
127 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 124.5 14.1 133 237-407 9-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 1.9E-14 6.6E-19 125.8 13.5 129 238-405 13-141 (193)
129 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.9E-19 126.1 12.8 122 2-146 13-137 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 124.0 8.8 122 23-164 16-148 (149)
131 3sb4_A Hypothetical leucine ri 99.6 4.1E-15 1.4E-19 142.0 9.3 100 205-316 228-328 (329)
132 2o6r_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 120.9 14.1 133 205-383 9-141 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.5 3.7E-14 1.3E-18 122.2 10.6 134 255-404 15-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.5 6.4E-16 2.2E-20 136.1 -3.2 155 231-403 14-185 (198)
135 4fdw_A Leucine rich hypothetic 99.5 1E-11 3.5E-16 121.0 23.4 65 230-297 295-359 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 117.3 9.7 125 22-169 17-153 (176)
137 3g39_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 114.5 11.2 106 2-129 12-117 (170)
138 4fdw_A Leucine rich hypothetic 99.4 8.2E-12 2.8E-16 121.8 21.6 126 158-296 159-284 (401)
139 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 112.4 11.6 105 2-129 15-120 (174)
140 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 111.4 12.1 108 286-407 12-119 (170)
141 4fs7_A Uncharacterized protein 99.4 2.1E-11 7.2E-16 119.3 21.8 231 154-417 160-391 (394)
142 1ds9_A Outer arm dynein; leuci 99.4 4.5E-15 1.5E-19 130.7 -5.4 138 255-408 14-158 (198)
143 2r9u_A Variable lymphocyte rec 99.4 3.9E-12 1.3E-16 109.0 11.9 88 309-405 33-120 (174)
144 4fs7_A Uncharacterized protein 99.4 4.2E-11 1.4E-15 117.1 20.7 214 174-418 156-370 (394)
145 4gt6_A Cell surface protein; l 99.3 2.1E-09 7.3E-14 105.0 25.4 134 250-401 256-389 (394)
146 3un9_A NLR family member X1; l 99.2 1.1E-13 3.7E-18 133.7 -5.6 171 236-411 73-260 (372)
147 2ifg_A High affinity nerve gro 99.2 5E-11 1.7E-15 114.5 10.2 105 3-129 12-118 (347)
148 3un9_A NLR family member X1; l 99.1 4.8E-12 1.6E-16 122.2 -0.7 63 341-403 210-283 (372)
149 4gt6_A Cell surface protein; l 99.1 3.6E-08 1.2E-12 96.2 26.2 315 14-378 53-390 (394)
150 2ifg_A High affinity nerve gro 99.1 5.5E-10 1.9E-14 107.2 11.5 102 27-148 11-116 (347)
151 4h09_A Hypothetical leucine ri 98.9 3.4E-07 1.2E-11 88.8 25.8 57 22-81 44-100 (379)
152 2ra8_A Uncharacterized protein 98.8 5.3E-10 1.8E-14 107.0 1.3 64 341-404 251-321 (362)
153 2ra8_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 99.9 7.6 164 227-401 164-341 (362)
154 4h09_A Hypothetical leucine ri 98.7 2.6E-06 8.7E-11 82.6 23.2 65 14-82 59-123 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 3E-08 1E-12 85.5 1.9 65 339-403 90-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 5.2E-08 1.8E-12 84.0 0.6 65 22-86 34-107 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.7E-07 5.9E-12 84.9 2.9 67 21-89 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 9.8E-07 3.4E-11 79.9 6.1 67 339-407 167-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.6E-11 73.2 0.5 82 1-83 63-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.4E-06 8.1E-11 71.7 1.4 84 23-124 60-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 7E-05 2.4E-09 64.0 1.6 81 1-82 43-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00021 7.1E-09 61.1 3.6 64 340-403 96-170 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00081 2.8E-08 53.6 6.0 58 345-404 11-69 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.00097 3.3E-08 53.1 5.5 56 28-85 12-68 (130)
165 2k9y_A Ephrin type-A receptor 87.7 0.45 1.5E-05 28.6 2.9 24 479-502 17-41 (41)
166 2ks1_B Epidermal growth factor 85.6 1 3.5E-05 27.4 3.6 25 477-501 13-39 (44)
167 2l2t_A Receptor tyrosine-prote 81.7 0.72 2.5E-05 28.0 1.8 25 477-501 12-38 (44)
168 2k1k_A Ephrin type-A receptor 80.5 1.2 4E-05 26.2 2.4 24 478-501 13-38 (38)
169 2jwa_A Receptor tyrosine-prote 79.8 0.64 2.2E-05 28.2 1.1 8 494-501 32-39 (44)
170 1iij_A ERBB-2 receptor protein 79.2 0.81 2.8E-05 26.1 1.3 7 477-483 10-16 (35)
171 2lz0_A Uncharacterized protein 63.0 11 0.00038 27.6 4.8 45 36-81 8-52 (100)
172 2lz0_A Uncharacterized protein 50.3 24 0.00081 25.9 4.7 46 247-293 8-53 (100)
173 2l9u_A Receptor tyrosine-prote 38.7 11 0.00036 21.1 0.8 9 493-501 26-34 (40)
174 2k1a_A Integrin alpha-IIB; sin 35.3 48 0.0016 19.8 3.4 13 478-490 14-26 (42)
175 2l8s_A Integrin alpha-1; trans 31.4 52 0.0018 20.9 3.2 12 478-489 13-24 (54)
176 2knc_A Integrin alpha-IIB; tra 29.2 51 0.0017 20.9 3.0 12 478-489 16-27 (54)
177 2llm_A Amyloid beta A4 protein 35.0 12 0.0004 22.3 0.0 14 487-500 29-42 (43)
178 2l6w_A Beta-type platelet-deri 31.4 15 0.0005 21.4 0.0 11 491-501 26-36 (39)
179 3qrx_B Melittin; calcium-bindi 22.6 26 0.0009 17.8 0.6 18 485-502 8-25 (26)
180 2lp1_A C99; alzheimer'S D memb 27.3 19 0.00066 26.7 0.0 10 491-500 47-56 (122)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-55 Score=465.67 Aligned_cols=437 Identities=33% Similarity=0.506 Sum_probs=333.3
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCC-------------------
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFV------------------- 61 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~------------------- 61 (502)
|++|+|++|.+++.+|. +. .+++|++|++++|.+++.+|..|.++++|++|++++|.+.
T Consensus 202 L~~L~Ls~n~l~~~~~~-l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPF-LG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279 (768)
T ss_dssp CCEEECCSSCCCSCCCB-CT-TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred CCEEECcCCcCCCCCcc-cc-cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCC
Confidence 45566666666555554 44 5566666666666555555555555555555555555544
Q ss_pred ---ccCCcccCCC-CCCCEEEcccCcCcccCChhhhcccCCee--------ccccchh-hhhhccCcccEEECCCCcCcc
Q 037195 62 ---GKIPDIFTNL-TRLSYLGLGGNQLIGSIPSSIFELLNLTF--------AISVAAW-MWDIGVHTLIYLELSRNFLTN 128 (502)
Q Consensus 62 ---~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~--------~~~~~~~-~~~~~~~~L~~L~l~~n~l~~ 128 (502)
+.+|..+... ++|++|++++|.+++.+|..++.+.+|+. .+.+|.. +..+ ++|++|++++|.+++
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFNEFSG 357 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCCEEECCSSEEEE
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCCEEeCcCCccCc
Confidence 4455555443 66666666666666666666666665555 2345544 4544 666666666666664
Q ss_pred cCCC---CCC-CCceEeCcCCcCCccCCCC-----CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccc
Q 037195 129 IDHL---PWK-NLEYLHLDSNLLQGSLLNL-----PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQC 199 (502)
Q Consensus 129 ~~~~---~~~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 199 (502)
..+. .+. +|++|++++|.+++..+.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++..+..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 4332 233 6777777777666554443 456777777777777777777777778888888888777777777
Q ss_pred ccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcc
Q 037195 200 LGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHW 278 (502)
Q Consensus 200 ~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 278 (502)
+.... |+.|++++| .+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|.+
T Consensus 438 l~~l~~L~~L~L~~n--------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLN--------MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp GGGCTTCCEEECCSS--------CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred HhcCCCCCEEECCCC--------cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 66655 788887554 445578888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCc------------------------
Q 037195 279 LDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGND------------------------ 334 (502)
Q Consensus 279 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------------------------ 334 (502)
+..+++|++|++++|++.+.+|..+ ..+++|+.|++++|++.+.+|..+.....
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 9999999999999999999888776 67899999999999999999876542100
Q ss_pred -------------------------------------hhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCc
Q 037195 335 -------------------------------------IQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNN 377 (502)
Q Consensus 335 -------------------------------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 377 (502)
...++.+++|+.|||++|+++|.+|..++.++.|+.|+|++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 0012335789999999999999999999999999999999999
Q ss_pred CCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc-----------cCCCCCCCccCCCcccCCCCCCCCCCCC
Q 037195 378 LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV-----------RPGGPQFNTFGNDSYSGNSGLCGFPLSK 446 (502)
Q Consensus 378 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~-----------~~~~~~~~~~~~~~~~~n~~lc~~~~~~ 446 (502)
++|.+|..++.+++|++||+++|+++|.+|..+..++.|+. +|.+.+|.++...+|.|||++||.|+.
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~- 746 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP- 746 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-
Confidence 99999999999999999999999999999999999998875 888999999999999999999999987
Q ss_pred CCCCCC
Q 037195 447 SCSTDE 452 (502)
Q Consensus 447 ~c~~~~ 452 (502)
.|....
T Consensus 747 ~C~~~~ 752 (768)
T 3rgz_A 747 RCDPSN 752 (768)
T ss_dssp CCCSCC
T ss_pred CCCCCc
Confidence 887543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-48 Score=413.68 Aligned_cols=386 Identities=31% Similarity=0.464 Sum_probs=332.5
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCC-CCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNL-QQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 250 ~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 44444444444444432 34555555555565656777777665 999999999999999999999999999999999
Q ss_pred cCcCcccCChh-hhcccCCee--------ccccchhhhhhccC-cccEEECCCCcCcccCCC-----CCCCCceEeCcCC
Q 037195 81 GNQLIGSIPSS-IFELLNLTF--------AISVAAWMWDIGVH-TLIYLELSRNFLTNIDHL-----PWKNLEYLHLDSN 145 (502)
Q Consensus 81 ~n~l~~~~p~~-~~~l~~L~~--------~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n 145 (502)
+|.+.+.+|.. +..+.+|+. .+.+|.++..+ + +|++|++++|.+++..+. .+++|++|++++|
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH--TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh--hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 99999889976 888888887 45788888877 6 999999999999876542 2678999999999
Q ss_pred cCCccCCCC---CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCC
Q 037195 146 LLQGSLLNL---PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMN 221 (502)
Q Consensus 146 ~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~ 221 (502)
.+++..+.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.++..+.... |+.|++++|.+
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------ 478 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL------ 478 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC------
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc------
Confidence 999877654 78999999999999999999999999999999999999999988887766 99999966654
Q ss_pred eeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCC
Q 037195 222 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDD 301 (502)
Q Consensus 222 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 301 (502)
.+.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.|.+|.
T Consensus 479 --~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 479 --TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp --CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred --cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 456788899999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred CCC--------------------------------------------------------------------CCCCCCccE
Q 037195 302 TKT--------------------------------------------------------------------RVPFPKLRI 313 (502)
Q Consensus 302 ~~~--------------------------------------------------------------------~~~l~~L~~ 313 (502)
.+. ...+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 221 123578999
Q ss_pred EEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCC
Q 037195 314 IDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELE 393 (502)
Q Consensus 314 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 393 (502)
|++++|+++|.+|..+ +.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+
T Consensus 637 LdLs~N~l~g~ip~~l---------~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEI---------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp EECCSSCCBSCCCGGG---------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred EECcCCcccccCCHHH---------hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 9999999999999876 4589999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCccCchh
Q 037195 394 SLDLSSNKLAGRIPTQ 409 (502)
Q Consensus 394 ~L~ls~n~l~~~~p~~ 409 (502)
+||+++|+++|.+|..
T Consensus 708 ~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EEECCSSEEEEECCSS
T ss_pred EEECcCCcccccCCCc
Confidence 9999999999999974
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-44 Score=377.47 Aligned_cols=420 Identities=17% Similarity=0.162 Sum_probs=274.1
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++|+|++|.+++..|..+. ++++|++|++++|.+.+..|..|.++++|++|++++|++.+..|.+|+++++|++|+++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 47888888888766676776 78888888888888887778888888888888888888887778888888888888888
Q ss_pred cCcCcccCChhhhcccCCeec-------c--ccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCc--eEeCcCCc
Q 037195 81 GNQLIGSIPSSIFELLNLTFA-------I--SVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLE--YLHLDSNL 146 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~-------~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~--~L~l~~n~ 146 (502)
+|.+++..|..++.+.+|+.. . ..|.... +++|++|++++|.+++..+ ..+++|+ .|++++|.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP---TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC---CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccC---CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 888875546667777777661 1 1122222 3677777777776665543 2445555 55555555
Q ss_pred CCccCCCC------------------------------------------------------------------------
Q 037195 147 LQGSLLNL------------------------------------------------------------------------ 154 (502)
Q Consensus 147 l~~~~~~~------------------------------------------------------------------------ 154 (502)
+.+..+..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 54332211
Q ss_pred ------CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccC
Q 037195 155 ------PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSL 227 (502)
Q Consensus 155 ------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~ 227 (502)
+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.... |+.|++++|.+ .+.+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~--------~~~~ 341 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK--------RLEL 341 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS--------CCBC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc--------cccc
Confidence 344444444444444 3344444444444555544444444343333333 44444444332 2233
Q ss_pred cc-chhcCCCccEEeccCCccccCC--CccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCC
Q 037195 228 PQ-TFAKSCVLVSLNLNGNRLEGPL--PPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKT 304 (502)
Q Consensus 228 ~~-~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 304 (502)
|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 420 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP- 420 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh-
Confidence 33 3667778888888888877554 5667788888888888888877777778888888888888888776554331
Q ss_pred CCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccccc---chhhhcCCCCCCEEeCcCCcCCCC
Q 037195 305 RVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGE---ILEVLGKLNSLKSLNISHNNLTGG 381 (502)
Q Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~ 381 (502)
...+++|+.|++++|.+.+..|..+ ..+++|++|++++|++++. .+..+..+++|+.|++++|++++.
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLF---------DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTT---------TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred hhCcccCCEEECCCCccCCcCHHHH---------hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 1557788888888888776666544 2367777777777777652 224566777777777777777766
Q ss_pred CchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCcc-----------CCCcccCCCCCCCCC
Q 037195 382 IPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTF-----------GNDSYSGNSGLCGFP 443 (502)
Q Consensus 382 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~-----------~~~~~~~n~~lc~~~ 443 (502)
.|..|..+++|++|++++|++++..|..+..++.|.....++.+..+ ....+.+||+.|.++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 67777777777777777777777777777777666222333333322 233467888888765
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-45 Score=391.51 Aligned_cols=126 Identities=25% Similarity=0.192 Sum_probs=88.6
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccC-CcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHI-PSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGL 79 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 79 (502)
+++|||++|.+++..|..+. ++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|.+|+++++|++|+|
T Consensus 26 l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp CCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred cCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 57888888888877677776 7888888888888544444 677888888888888888888777888888888888888
Q ss_pred ccCcCcccCChh--hhcccCCee--------cccc-chhhhhhccCcccEEECCCCcCccc
Q 037195 80 GGNQLIGSIPSS--IFELLNLTF--------AISV-AAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 80 ~~n~l~~~~p~~--~~~l~~L~~--------~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
++|.+.+.+|.. +..+++|+. .+.. +..+..+ ++|++|++++|.+++.
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSCCCCC
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCcCCee
Confidence 888887666655 666655554 1111 1234444 5555666555555444
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-43 Score=369.58 Aligned_cols=432 Identities=20% Similarity=0.165 Sum_probs=248.2
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+++..|..+. ++++|++|++++|.+++..+..|.++++|++|++++|++.+..|.+|+++++|++|+++
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred CcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 56777777777766666666 67788888888887775444467788888888888888776666778888888888888
Q ss_pred cCcCcccCChhhhcccCCee--------ccccchhhhhhccCcccEEECCCCcCcccCCCC-------------------
Q 037195 81 GNQLIGSIPSSIFELLNLTF--------AISVAAWMWDIGVHTLIYLELSRNFLTNIDHLP------------------- 133 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------------------- 133 (502)
+|.+++..|..++.+.+|+. .+..+..+....+++|++|++++|.+++..+..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH
T ss_pred CCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh
Confidence 88877666666777777766 122233333334466777777766665543310
Q ss_pred -----------CCC--------------------------CceEeCcCCcCCccCCC---CCCCccEEEccCCcCcccCC
Q 037195 134 -----------WKN--------------------------LEYLHLDSNLLQGSLLN---LPPHMREFSISRNNLTGEIP 173 (502)
Q Consensus 134 -----------~~~--------------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~ 173 (502)
.++ |++|++++|.+.+..+. .+++|++|++++|.+++..+
T Consensus 210 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred hhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 022 44444444444433322 14445555555554444333
Q ss_pred ccccC---------------------------------CCCCCEEECCCCcCcccccccccccc-ccEEEccCCccC---
Q 037195 174 SSFCN---------------------------------LSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQ--- 216 (502)
Q Consensus 174 ~~l~~---------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~--- 216 (502)
..+.. +++|++|++++|.+++..+..+.... |+.|++++|.+.
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence 32222 23333333333444333333333333 455555444311
Q ss_pred -----------------CCCCCeeeccCccchhcCCCccEEeccCCccccCCC-ccccCCCCCcEEEccCCccCccCCcc
Q 037195 217 -----------------DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINDTFPHW 278 (502)
Q Consensus 217 -----------------~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 278 (502)
++..+.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh
Confidence 012233344445555666666666666666654443 45566666666666666665555555
Q ss_pred cCCCCCCCEEEccCCcCc--ccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccc
Q 037195 279 LDVLPELQVLTLRSNRFR--GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQG 356 (502)
Q Consensus 279 ~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 356 (502)
|..+++|+.|++++|.+. +..+..+ ..+++|+.|++++|++++..+..+ ..+++|++|++++|++++
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~i~~~~~---------~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIANINDDML---------EGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCGG
T ss_pred hhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCcCChhhh---------ccccccCEEeCCCCCccc
Confidence 555566666666665554 2233333 456777777777777776555433 236667777777777665
Q ss_pred cch--------hhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc-cCCCCCCC-
Q 037195 357 EIL--------EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV-RPGGPQFN- 426 (502)
Q Consensus 357 ~~~--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~-~~~~~~~~- 426 (502)
..+ ..++.+++|+.|+|++|+++...+..|..+++|++|++++|++++..+..+..+..|+. ...++++.
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 321 12566677777777777776333345667777777777777777555555555555554 12222222
Q ss_pred -----------ccCCCcccCCCCCCCCCC
Q 037195 427 -----------TFGNDSYSGNSGLCGFPL 444 (502)
Q Consensus 427 -----------~~~~~~~~~n~~lc~~~~ 444 (502)
.+....+.+||+.|+|+.
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cChhHhcccccccCEEEccCCCcccCCcc
Confidence 233345679999998764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-43 Score=369.51 Aligned_cols=413 Identities=20% Similarity=0.165 Sum_probs=234.7
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++|+|++|.+++..+..+. ++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|++|+++++|++|+++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred cCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 57889999998866666666 88999999999999887778888999999999999999887778889999999999999
Q ss_pred cCcCcccCChhhhcccCCee---------ccccchhhhhhccCcccEEECCCCcCcccCCCCC---CC----CceEeCcC
Q 037195 81 GNQLIGSIPSSIFELLNLTF---------AISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPW---KN----LEYLHLDS 144 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~---------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~----L~~L~l~~ 144 (502)
+|.+.+..+..++.+.+|+. ...+|..+..+ ++|++|++++|.+++..+..+ .+ ++++++++
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99888555577888887777 12467777777 888888888888877655322 11 23555555
Q ss_pred CcCCccCCCC--CCCccEEEccC---------------------------------------------------------
Q 037195 145 NLLQGSLLNL--PPHMREFSISR--------------------------------------------------------- 165 (502)
Q Consensus 145 n~l~~~~~~~--~~~L~~L~l~~--------------------------------------------------------- 165 (502)
|.+++..+.. ..+|+.|++++
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 5555333222 12344444444
Q ss_pred ------------------------CcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccC-----
Q 037195 166 ------------------------NNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQ----- 216 (502)
Q Consensus 166 ------------------------n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~----- 216 (502)
|.+. .++ .+..+++|+.|++++|.+ +.++.. ....|+.|++++|...
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCC
T ss_pred cccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhh
Confidence 4333 222 444555566666666655 333322 2223555555555211
Q ss_pred ---------CCCCCeeecc--CccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCC-cccCCCCC
Q 037195 217 ---------DMRMNKFSGS--LPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFP-HWLDVLPE 284 (502)
Q Consensus 217 ---------~~~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 284 (502)
+++.+.+.+. +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 0111222221 23344444444444444444442 22344444445555555544444433 34444445
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCC-CchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhc
Q 037195 285 LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGV-LPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLG 363 (502)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 363 (502)
|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. +|..+ +.+++|++|++++|++++..|..++
T Consensus 426 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVF---------ANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp CCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCC---------TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHhh---------ccCCCCCEEECCCCcCCccChhhhc
Confidence 5555555555444444333 3344555555555544432 22222 2245555555555555555455555
Q ss_pred CCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 364 KLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 364 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
.+++|+.|++++|++++.+|..+..+++|++|++++|+++ .+|..+..+.. .+....+.+||+.|+++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~-----------~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK-----------SLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT-----------TCCEEECCSCCCCCSST
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc-----------cCcEEEccCCCcccCCc
Confidence 5555555555555555444555555555555555555554 34443333320 12233567888888776
Q ss_pred C
Q 037195 444 L 444 (502)
Q Consensus 444 ~ 444 (502)
.
T Consensus 563 ~ 563 (606)
T 3vq2_A 563 H 563 (606)
T ss_dssp T
T ss_pred c
Confidence 4
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-43 Score=367.85 Aligned_cols=369 Identities=18% Similarity=0.242 Sum_probs=271.6
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCc---------------------------------------------
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNS--------------------------------------------- 35 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~--------------------------------------------- 35 (502)
++.|+|+++.+.|.+|+.++ ++++|++|+|++|.
T Consensus 83 V~~L~L~~~~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp EEEEECTTSCCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred EEEEEecCcccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 36799999999999999999 89999999999884
Q ss_pred ---------------------------------ccccCCcCCCCCCCCCEEeccCCcCCcc-----------------CC
Q 037195 36 ---------------------------------FSGHIPSSFSNLQQLRLLDLRYNNFVGK-----------------IP 65 (502)
Q Consensus 36 ---------------------------------l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~ 65 (502)
+++ +|..|+++++|++|+|++|.+++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 334 777888999999999999999875 88
Q ss_pred cccC--CCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCc-Ccc-cCC---CC-----
Q 037195 66 DIFT--NLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF-LTN-IDH---LP----- 133 (502)
Q Consensus 66 ~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~---~~----- 133 (502)
..++ ++++|++|++++|.+.+.+|..++++ ++|++|++++|. +++ ..+ ..
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l------------------~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~ 302 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL------------------PEMQLINVACNRGISGEQLKDDWQALADAP 302 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC------------------SSCCEEECTTCTTSCHHHHHHHHHHHHHSG
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcC------------------CCCCEEECcCCCCCccccchHHHHhhhccc
Confidence 8888 99999999999999888899888877 778888888887 775 222 12
Q ss_pred -CCCCceEeCcCCcCCccCCC-----CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccc-ccc-c
Q 037195 134 -WKNLEYLHLDSNLLQGSLLN-----LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLG-NST-L 205 (502)
Q Consensus 134 -~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~-L 205 (502)
+++|++|++++|.++ .+|. .+++|++|++++|.+++.+| .+..+++|+.|++++|.++ .++..+. ... |
T Consensus 303 ~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L 379 (636)
T 4eco_A 303 VGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379 (636)
T ss_dssp GGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC
T ss_pred cCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccC
Confidence 267888888888877 4444 26778888888888877777 7777778888888888777 3333333 344 7
Q ss_pred cEEEccCCccCCCCCCeeeccCccchhcCC--CccEEeccCCccccCCCcccc-------CCCCCcEEEccCCccCccCC
Q 037195 206 DTLDLGMNNFQDMRMNKFSGSLPQTFAKSC--VLVSLNLNGNRLEGPLPPSLV-------NCRHLEVIDVGNNQINDTFP 276 (502)
Q Consensus 206 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~ 276 (502)
+.|++++|.++. +|..+..+. +|+.|++++|.+.+..|..+. .+++|++|++++|.+....+
T Consensus 380 ~~L~Ls~N~l~~---------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 380 ENLSFAHNKLKY---------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp CEEECCSSCCSS---------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred cEEEccCCcCcc---------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 888887776653 344444433 688888888888777777776 66778888888888875544
Q ss_pred cccCCCCCCCEEEccCCcCcccCCCCCCC-----CCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccC
Q 037195 277 HWLDVLPELQVLTLRSNRFRGPIDDTKTR-----VPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSS 351 (502)
Q Consensus 277 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 351 (502)
..+..+++|++|++++|.++......+.. ..+++|+.|++++|+++ .+|..+.. ..+++|++|+|++
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------TTLPYLVGIDLSY 522 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------TTCTTCCEEECCS
T ss_pred HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------ccCCCcCEEECCC
Confidence 55566788888888888877433333210 11227888888888877 45544320 1367888888888
Q ss_pred CcccccchhhhcCCCCCCEEeC------cCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcc
Q 037195 352 NRFQGEILEVLGKLNSLKSLNI------SHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA 411 (502)
Q Consensus 352 n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 411 (502)
|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..+.
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 88886 6777777888888888 45667777888888888888888888888 46676543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.8e-42 Score=358.69 Aligned_cols=419 Identities=21% Similarity=0.226 Sum_probs=317.1
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+.++.++..++ .+|..++ +++++|++++|.+++..|..|.++++|++|++++|++.+..|.+|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 45777777775 7888877 4799999999999988899999999999999999999988899999999999999999
Q ss_pred CcCcccCChhhhcccCCeec--------cccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCcc
Q 037195 82 NQLIGSIPSSIFELLNLTFA--------ISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQGS 150 (502)
Q Consensus 82 n~l~~~~p~~~~~l~~L~~~--------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~ 150 (502)
|++.+..|..++.+.+|+.. +..|..+..+ ++|++|++++|.++++.. ..+++|++|++++|.+++.
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC--TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccC--CcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 99998888899998777661 1113344444 777777777777776532 3467777777777777755
Q ss_pred CCC---CCCCcc--EEEccCCcCcccCCccccCC----------------------------------------------
Q 037195 151 LLN---LPPHMR--EFSISRNNLTGEIPSSFCNL---------------------------------------------- 179 (502)
Q Consensus 151 ~~~---~~~~L~--~L~l~~n~l~~~~~~~l~~l---------------------------------------------- 179 (502)
.+. .+++|+ .|++++|.+++..+..+...
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 432 255666 66777766665444332110
Q ss_pred -----CCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCC---------------CCCeeeccCccchhcCCCcc
Q 037195 180 -----SYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDM---------------RMNKFSGSLPQTFAKSCVLV 238 (502)
Q Consensus 180 -----~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~---------------~~~~~~~~~~~~~~~l~~L~ 238 (502)
.+|+.+++++|.+++..+..+.... |+.|++++|.++.+ ..+.+.+..|..+..+++|+
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 0334444444444444444344333 66666666655432 22333344566788889999
Q ss_pred EEeccCCccccCCCc-cccCCCCCcEEEccCCccCccC--CcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEE
Q 037195 239 SLNLNGNRLEGPLPP-SLVNCRHLEVIDVGNNQINDTF--PHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIID 315 (502)
Q Consensus 239 ~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 315 (502)
+|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+ ..+++|+.|+
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 406 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLD 406 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEE
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEE
Confidence 999999988765554 4889999999999999998765 7788999999999999999998877776 6689999999
Q ss_pred ccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCC---CchhccCCCCC
Q 037195 316 LSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGG---IPSSLRNLTEL 392 (502)
Q Consensus 316 L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L 392 (502)
+++|++.+..+.... ..+++|++|++++|.+++..+..++.+++|++|++++|++++. .+..+..+++|
T Consensus 407 l~~n~l~~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPF--------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCCEECCTTCCTT--------TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CCCCcCCCcccchhh--------hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 999999877654322 3489999999999999999999999999999999999999863 33678899999
Q ss_pred CEEeCCCCCCCccCchhcccCCCCCc-cCCCCCCCccCCCcccCC
Q 037195 393 ESLDLSSNKLAGRIPTQLASLNYLSV-RPGGPQFNTFGNDSYSGN 436 (502)
Q Consensus 393 ~~L~ls~n~l~~~~p~~~~~l~~L~~-~~~~~~~~~~~~~~~~~n 436 (502)
++|++++|++++..|..+..++.|+. ...++++.......+..-
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 99999999999999999999988876 334555555544444433
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.2e-41 Score=354.80 Aligned_cols=428 Identities=23% Similarity=0.260 Sum_probs=282.0
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++|+|++|.+++..+..+. .+++|++|++++|.+.+..|..|.++++|++|++++|++.+..+.+|+++++|++|+++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGG-GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CcEEECCCCCCCCcCHHHHh-CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 58999999999865555566 89999999999999998888889999999999999999996666689999999999999
Q ss_pred cCcCcccCChhhhcccCCee--------ccccchhhhhhccCcccEEECCCCcCcccCC-----CCCCCCceEeCcCCcC
Q 037195 81 GNQLIGSIPSSIFELLNLTF--------AISVAAWMWDIGVHTLIYLELSRNFLTNIDH-----LPWKNLEYLHLDSNLL 147 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l 147 (502)
+|.+.+..|..++.+.+|+. .+..|..+..+ ++|++|++++|.+++..+ ..+++|++|++++|.+
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCchhhccc--ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99998666678888888877 23334445555 889999999998887765 2457899999999887
Q ss_pred CccCCCC------------------------------CCCccEEEccCCcCcccCCccccCCCC--CCEEECCCCcCccc
Q 037195 148 QGSLLNL------------------------------PPHMREFSISRNNLTGEIPSSFCNLSY--IRFFDSSNNSLSGQ 195 (502)
Q Consensus 148 ~~~~~~~------------------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~ 195 (502)
++..+.. .++|+.|++++|.+++..+..+..++. |+.|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 7654431 134555555555555555555544433 55666665555555
Q ss_pred ccccccccc-ccEEEccCCccCCCCCCeeec---------------------cCcc----chhcCCCccEEeccCCcccc
Q 037195 196 ILQCLGNST-LDTLDLGMNNFQDMRMNKFSG---------------------SLPQ----TFAKSCVLVSLNLNGNRLEG 249 (502)
Q Consensus 196 ~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~---------------------~~~~----~~~~l~~L~~L~l~~n~l~~ 249 (502)
.+..+.... |+.|++++|.+..+....+.+ .+|. .+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 444444433 555555555443221111000 1121 44555566666666666655
Q ss_pred CCCccccCCCCCcEEEcc----------------------------CCccCccCCcccCCCCCCCEEEccCCcCcccCCC
Q 037195 250 PLPPSLVNCRHLEVIDVG----------------------------NNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDD 301 (502)
Q Consensus 250 ~~~~~l~~l~~L~~L~L~----------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 301 (502)
..+..+..+++|++|+++ +|.+.+..+..+..+++|++|++++|.+.+.++.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 555555555444444443 3344444455666677777777777777654432
Q ss_pred -CCCCCCCCCccEEEccCccCCCCCchhhhc-----------------CCchhHHHHhcccCeeeccCCcccccchhhhc
Q 037195 302 -TKTRVPFPKLRIIDLSYNRFTGVLPIWYLH-----------------GNDIQMERILTTFATIDLSSNRFQGEILEVLG 363 (502)
Q Consensus 302 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 363 (502)
.+ ..+++|++|++++|++.+..+..+.. ......+..+++|++|++++|++++..+..+.
T Consensus 424 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 424 QEW--RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp GGG--TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccc--cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 22 34566666666666654433322210 00011224578899999999999988888888
Q ss_pred CCCCCCEEeCcCCcCCCCCc--------hhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc-cCCCCCCCccCCCcc
Q 037195 364 KLNSLKSLNISHNNLTGGIP--------SSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV-RPGGPQFNTFGNDSY 433 (502)
Q Consensus 364 ~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~-~~~~~~~~~~~~~~~ 433 (502)
.+++|+.|++++|++++..+ ..+..+++|++|++++|+++...+..+..++.|+. ...++.+..++...|
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 99999999999998875322 23778899999999999998544456788877765 234444544444333
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-41 Score=349.68 Aligned_cols=382 Identities=20% Similarity=0.187 Sum_probs=285.6
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+++..|..+. ++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|+++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred CcEEeCCCCcccccCHHHhh-chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence 68899999998876676676 89999999999999987778889999999999999999887776788999999999999
Q ss_pred cCcCcc-cCChhhhcccCCee--------ccccchhhhhhccCcc----cEEECCCCcCcccCCC--CCCCCceEeCcCC
Q 037195 81 GNQLIG-SIPSSIFELLNLTF--------AISVAAWMWDIGVHTL----IYLELSRNFLTNIDHL--PWKNLEYLHLDSN 145 (502)
Q Consensus 81 ~n~l~~-~~p~~~~~l~~L~~--------~~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n 145 (502)
+|.+.+ .+|..++++++|+. .+..|..+..+ .+| ++|++++|.++.++.. ...+|++|++++|
T Consensus 137 ~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL--RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp SSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH--HHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh--hccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 998875 57888888888877 22223334333 322 2555555555544431 1123344444333
Q ss_pred c-------------------------------------------------------------------------------
Q 037195 146 L------------------------------------------------------------------------------- 146 (502)
Q Consensus 146 ~------------------------------------------------------------------------------- 146 (502)
.
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 2
Q ss_pred --CCccC-CCCCCCccEEEccCCcCcccCCc--------------------cccCCCCCCEEECCCCcCcccc--ccccc
Q 037195 147 --LQGSL-LNLPPHMREFSISRNNLTGEIPS--------------------SFCNLSYIRFFDSSNNSLSGQI--LQCLG 201 (502)
Q Consensus 147 --l~~~~-~~~~~~L~~L~l~~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~l~~~~--~~~~~ 201 (502)
+.... ...+++|++|++++|.+ +.+|. .+..+++|+.|++++|.+++.. +..+.
T Consensus 295 ~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 295 VSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred ccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 22111 11144666666666666 34442 2334445555555555554431 23333
Q ss_pred ccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCC-ccccCCCCCcEEEccCCccCccCCccc
Q 037195 202 NST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINDTFPHWL 279 (502)
Q Consensus 202 ~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 279 (502)
... |+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 374 ~~~~L~~L~L~~n~l~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAI---------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp CCSCCCEEECCSCSEE---------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cCCcccEeECCCCccc---------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 333 555555444433 245678889999999999999998877 678999999999999999999899999
Q ss_pred CCCCCCCEEEccCCcCccc-CCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccc
Q 037195 280 DVLPELQVLTLRSNRFRGP-IDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEI 358 (502)
Q Consensus 280 ~~l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 358 (502)
..+++|++|++++|.+.+. .+..+ ..+++|+.|++++|++++..|..+ ..+++|++|++++|++++.+
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVF---------DTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECCSSCCSCEE
T ss_pred cCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhh---------cccccCCEEECCCCcCCCcC
Confidence 9999999999999999873 56666 678999999999999998877665 34899999999999999999
Q ss_pred hhhhcCCCCCCEEeCcCCcCCCCCchhccCCC-CCCEEeCCCCCCCccCc
Q 037195 359 LEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT-ELESLDLSSNKLAGRIP 407 (502)
Q Consensus 359 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~~p 407 (502)
|..++.+++|+.|++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999999 7888888887 59999999999997655
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=364.29 Aligned_cols=412 Identities=20% Similarity=0.208 Sum_probs=280.4
Q ss_pred CCEEEecCCCCcccC-ChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcc--cCCCCCCCEE
Q 037195 1 MTLRNLSSSYFMGSI-PASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDI--FTNLTRLSYL 77 (502)
Q Consensus 1 l~~L~Ls~n~~~~~i-p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L 77 (502)
|++|+|++|.+.+.+ |..+. ++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|.. |.++++|++|
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFR-NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTS-SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred CeEEeCCCCCCccccCHHHhc-CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 689999999877788 44555 9999999999999999888999999999999999999999766655 9999999999
Q ss_pred EcccCcCcccCC-hhhhcccCCee--------ccccchhhhhhccCcccEEECCCCcCcccCCCC---CC------CCce
Q 037195 78 GLGGNQLIGSIP-SSIFELLNLTF--------AISVAAWMWDIGVHTLIYLELSRNFLTNIDHLP---WK------NLEY 139 (502)
Q Consensus 78 ~L~~n~l~~~~p-~~~~~l~~L~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~------~L~~ 139 (502)
+|++|.+.+..+ ..++++++|+. .+..+..+..+..++|+.|++++|.+.+..+.. +. .|+.
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 999999986544 57888998887 234555665554478999999999887765422 22 3888
Q ss_pred EeCcCCcCCccCCCC-----------------------------------------CCCccEEEccCCcCcccCCccccC
Q 037195 140 LHLDSNLLQGSLLNL-----------------------------------------PPHMREFSISRNNLTGEIPSSFCN 178 (502)
Q Consensus 140 L~l~~n~l~~~~~~~-----------------------------------------~~~L~~L~l~~n~l~~~~~~~l~~ 178 (502)
|++++|.+.+..+.. .++|+.|++++|.+.+..+..+..
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc
Confidence 998888665432211 257888888888888877888888
Q ss_pred CCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccC
Q 037195 179 LSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN 257 (502)
Q Consensus 179 l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 257 (502)
+++|+.|++++|.+++..+..+.... |+.|++++|.++. ..|..+..+++|+.|++++|.+.+..+..+..
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--------cCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 88888888888888887777776655 8888887776653 33556677778888888888887777777788
Q ss_pred CCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCC-------------------CCCCCCCccEEEccC
Q 037195 258 CRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTK-------------------TRVPFPKLRIIDLSY 318 (502)
Q Consensus 258 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------~~~~l~~L~~L~L~~ 318 (502)
+++|++|++++|.+.+.. .+++|+.|++++|+++....... ....+++|+.|++++
T Consensus 361 l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 361 LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 888888888888775421 13444444444444432211100 001355666666666
Q ss_pred ccCCCCCchhhhcC---------------------CchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCc
Q 037195 319 NRFTGVLPIWYLHG---------------------NDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNN 377 (502)
Q Consensus 319 n~l~~~~~~~~~~~---------------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 377 (502)
|++++..+...... .....+..+++|++|+|++|++++.++..|..+++|+.|+|++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 66554322211000 000112235666666666666666666666666666666666666
Q ss_pred CCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 378 LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 378 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
+++..+..+. ++|+.|++++|++++..|..+..+ ....+.+||+.|+|+
T Consensus 516 l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L---------------~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 516 LTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSL---------------SVLDITHNKFICECE 564 (844)
T ss_dssp CSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSC---------------CEEEEEEECCCCSSS
T ss_pred CCccChhhhh--ccccEEECCCCcCCCCChhHhCCc---------------CEEEecCCCcccccc
Confidence 6654444443 566666666666666666554433 233456677777554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=354.19 Aligned_cols=413 Identities=18% Similarity=0.168 Sum_probs=287.3
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
++.|+|++|.+++..+..+. .+++|++|++++|.+++..+..|.++++|++|++++|++.+..|.+|+++++|++|+++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 57889999998766666666 88999999999998887777788899999999999998887777888899999999999
Q ss_pred cCcCcccCChhhhcccCCeec---------cccchhhhhhccCcccEEECCCCcCcccCCC---CCCCC----ceEeCcC
Q 037195 81 GNQLIGSIPSSIFELLNLTFA---------ISVAAWMWDIGVHTLIYLELSRNFLTNIDHL---PWKNL----EYLHLDS 144 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~---------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L----~~L~l~~ 144 (502)
+|.+++..+..++.+.+|+.. ..+|..+..+ ++|++|++++|.+++..+. .+.+| +.+++++
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhccc--CCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 988884333467777777661 1356666666 7888888888877766542 23344 5667777
Q ss_pred CcCCccCCCC--CCCccEEEccCC--------------------------------------------------------
Q 037195 145 NLLQGSLLNL--PPHMREFSISRN-------------------------------------------------------- 166 (502)
Q Consensus 145 n~l~~~~~~~--~~~L~~L~l~~n-------------------------------------------------------- 166 (502)
|.+.+..+.. ..+|+.|++++|
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7666544333 224555555444
Q ss_pred --cCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCee-------------eccCccch
Q 037195 167 --NLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKF-------------SGSLPQTF 231 (502)
Q Consensus 167 --~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-------------~~~~~~~~ 231 (502)
.+.+..+..+..+++|+.|++++|.+++ ++..+....|+.|++++|.+..++...+ .+..+.
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-- 343 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-- 343 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--
Confidence 2223334445556667777777776664 3333333356666666666553332111 111111
Q ss_pred hcCCCccEEeccCCccccCC--CccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 037195 232 AKSCVLVSLNLNGNRLEGPL--PPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDD-TKTRVPF 308 (502)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~l 308 (502)
..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+. .+ ..+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l 420 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF--LSL 420 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT--TTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh--hcC
Confidence 45677888888888876543 55677788888888888887665444 77888888888888888766542 23 567
Q ss_pred CCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccc-ccchhhhcCCCCCCEEeCcCCcCCCCCchhcc
Q 037195 309 PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQ-GEILEVLGKLNSLKSLNISHNNLTGGIPSSLR 387 (502)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 387 (502)
++|++|++++|.+.+..|..+ ..+++|++|++++|.++ +.+|..++.+++|+.|++++|++++..|..+.
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIF---------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTT---------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCEEeCcCCcccccchhhh---------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 888888888888877666544 33788888888888887 46777888888888888888888877788888
Q ss_pred CCCCCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 388 NLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 388 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
.+++|++|++++|++++..|..+..++.|+. ..+.+|++.|.++
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~------------L~l~~N~~~~~~~ 535 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQK------------IWLHTNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE------------EECCSSCBCCCTT
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcE------------EEecCCcccCCCc
Confidence 8888888888888888777766766655433 2456777777654
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.3e-42 Score=356.20 Aligned_cols=357 Identities=20% Similarity=0.274 Sum_probs=300.8
Q ss_pred CCcccCChhhhhCCCCCcEEEccCCccccc-----------------CCcCCC--CCCCCCEEeccCCcCCccCCcccCC
Q 037195 10 YFMGSIPASLGNDITQLAYLDLSFNSFSGH-----------------IPSSFS--NLQQLRLLDLRYNNFVGKIPDIFTN 70 (502)
Q Consensus 10 ~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~ 70 (502)
++++ +|..+. ++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 194 ~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 4445 888888 899999999999999985 999999 9999999999999999999999999
Q ss_pred CCCCCEEEcccCc-Ccc-cCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC----CCCCCCceEeCcC
Q 037195 71 LTRLSYLGLGGNQ-LIG-SIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH----LPWKNLEYLHLDS 144 (502)
Q Consensus 71 l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~ 144 (502)
+++|++|++++|+ +++ .+|..++.+..+. .+++|++|++++|.++.++. ..+++|++|++++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~------------~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAP------------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSG------------GGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccc------------cCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence 9999999999998 988 8998887752111 22899999999999997765 4788999999999
Q ss_pred CcCCccCCCC--CCCccEEEccCCcCcccCCccccCCCC-CCEEECCCCcCccccccccccc---cccEEEccCCccCCC
Q 037195 145 NLLQGSLLNL--PPHMREFSISRNNLTGEIPSSFCNLSY-IRFFDSSNNSLSGQILQCLGNS---TLDTLDLGMNNFQDM 218 (502)
Q Consensus 145 n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~---~L~~L~l~~n~~~~~ 218 (502)
|.++|..+.. +++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+... .|+.|++++|.+..
T Consensus 340 N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 416 (636)
T 4eco_A 340 NQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS- 416 (636)
T ss_dssp CCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT-
T ss_pred CcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC-
Confidence 9999877744 789999999999999 78888999999 999999999998 556665543 49999997776653
Q ss_pred CCCeeeccCccchh-------cCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCC-------C
Q 037195 219 RMNKFSGSLPQTFA-------KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLP-------E 284 (502)
Q Consensus 219 ~~~~~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~ 284 (502)
.+|..+. .+.+|++|++++|.++...+..+..+++|++|++++|.+....+..+.... +
T Consensus 417 -------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 417 -------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp -------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred -------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 4555555 677899999999999965555567799999999999999854444444333 9
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeec------cCCcccccc
Q 037195 285 LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDL------SSNRFQGEI 358 (502)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L------s~n~l~~~~ 358 (502)
|++|++++|.++. +|..+....+++|+.|++++|++++ +|..+ ..+++|++|+| ++|++.+.+
T Consensus 490 L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~---------~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP---------LNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp CCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGG---------GGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred ccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhh---------hcCCCCCEEECCCCcccccCcccccC
Confidence 9999999999984 4444421368999999999999998 67655 34899999999 568889999
Q ss_pred hhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCc
Q 037195 359 LEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 359 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
|..++.+++|+.|+|++|++ +.+|..+. ++|++||+++|++..
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 99999999999999999999 48888775 899999999998874
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-41 Score=355.13 Aligned_cols=368 Identities=17% Similarity=0.233 Sum_probs=231.9
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEc-cCCccccc----------------------------------------
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDL-SFNSFSGH---------------------------------------- 39 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L-~~n~l~~~---------------------------------------- 39 (502)
++.|+|+++.+.|.+|+.++ ++++|++|+| ++|.+.+.
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp EEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred EEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 35799999999999999999 8999999999 77754333
Q ss_pred ------------------------------------CCcCCCCCCCCCEEeccCCcCCc-----------------cCCc
Q 037195 40 ------------------------------------IPSSFSNLQQLRLLDLRYNNFVG-----------------KIPD 66 (502)
Q Consensus 40 ------------------------------------~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~ 66 (502)
+|..|+++++|++|+|++|.+++ .+|.
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 78889999999999999999997 3888
Q ss_pred ccC--CCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCc-Ccc--cCC---------C
Q 037195 67 IFT--NLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF-LTN--IDH---------L 132 (502)
Q Consensus 67 ~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~--~~~---------~ 132 (502)
.++ ++++|++|+|++|.+.+.+|..++.+ ++|++|++++|. +++ ++. .
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L------------------~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDL------------------PELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGC------------------SSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCC------------------CCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 888 99999999999999998999999888 666666666665 554 111 1
Q ss_pred CCCCCceEeCcCCcCCccCCC-----CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccc-ccc-c
Q 037195 133 PWKNLEYLHLDSNLLQGSLLN-----LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLG-NST-L 205 (502)
Q Consensus 133 ~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~-L 205 (502)
.+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .++..+. ... |
T Consensus 546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence 3346666666666666 3333 2556666666666666 555 5666666666666666666 3333332 233 6
Q ss_pred cEEEccCCccCCCCCCeeeccCccchhcCC--CccEEeccCCccccCCCccc---c--CCCCCcEEEccCCccCccCCcc
Q 037195 206 DTLDLGMNNFQDMRMNKFSGSLPQTFAKSC--VLVSLNLNGNRLEGPLPPSL---V--NCRHLEVIDVGNNQINDTFPHW 278 (502)
Q Consensus 206 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~ 278 (502)
+.|++++|.++. +|..+..+. +|+.|++++|.+.+.+|... . .+++|+.|++++|.+....+..
T Consensus 622 ~~L~Ls~N~L~~---------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 622 EGLGFSHNKLKY---------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp CEEECCSSCCCS---------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH
T ss_pred CEEECcCCCCCc---------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH
Confidence 666665555442 233333332 26666666666655443211 1 2335666666666665333333
Q ss_pred cCCCCCCCEEEccCCcCcccCCCCCCC-----CCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCc
Q 037195 279 LDVLPELQVLTLRSNRFRGPIDDTKTR-----VPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNR 353 (502)
Q Consensus 279 ~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 353 (502)
+..+++|+.|++++|.+.......+.. ..+++|+.|+|++|+++ .+|..+.. ..+++|+.|+|++|+
T Consensus 693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------TTLPYLSNMDVSYNC 764 (876)
T ss_dssp HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------TTCTTCCEEECCSSC
T ss_pred HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------ccCCCcCEEEeCCCC
Confidence 345666666666666665333222210 11226666666666666 34433310 125666666666666
Q ss_pred ccccchhhhcCCCCCCEEeCcC------CcCCCCCchhccCCCCCCEEeCCCCCCCccCchhc
Q 037195 354 FQGEILEVLGKLNSLKSLNISH------NNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQL 410 (502)
Q Consensus 354 l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~ 410 (502)
+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+
T Consensus 765 L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred CCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 665 455566666666666654 555566666666666666666666666 4555543
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.3e-41 Score=344.13 Aligned_cols=406 Identities=21% Similarity=0.171 Sum_probs=245.5
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+++..|..+. .+++|++|++++|.+++..|..|.++++|++|++++|++.+..|.+|+++++|++|+++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp CCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred ccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 46677777777655555565 67777777777777776666667777777777777777776555567777777777777
Q ss_pred cCcCcc-cCChhhhcccCCee--------ccccc-hhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcC
Q 037195 81 GNQLIG-SIPSSIFELLNLTF--------AISVA-AWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLL 147 (502)
Q Consensus 81 ~n~l~~-~~p~~~~~l~~L~~--------~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l 147 (502)
+|.+++ ..|..++.+.+|+. .+.+| ..+..+ ++|++|++++|.+++..+ ..+++|++|+++.|.+
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL--TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc--cccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 777664 24455665544443 11222 223333 455555555555444332 1234444445544443
Q ss_pred CccCC---CCCCCccEEEccCCcCcccC--C-ccccCCCCCCEEECCCCcCcccccccc----ccc-cccEEEccCCccC
Q 037195 148 QGSLL---NLPPHMREFSISRNNLTGEI--P-SSFCNLSYIRFFDSSNNSLSGQILQCL----GNS-TLDTLDLGMNNFQ 216 (502)
Q Consensus 148 ~~~~~---~~~~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~~-~L~~L~l~~n~~~ 216 (502)
..... ..+++|+.|++++|.+++.. + .....+++|+.|++++|.+++..+..+ ... .++.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 32111 11445555555555555421 1 111233445555554444433211111 111 1333333333222
Q ss_pred CCC---------------------------------------------------CCeeeccCccch-hcCCCccEEeccC
Q 037195 217 DMR---------------------------------------------------MNKFSGSLPQTF-AKSCVLVSLNLNG 244 (502)
Q Consensus 217 ~~~---------------------------------------------------~~~~~~~~~~~~-~~l~~L~~L~l~~ 244 (502)
.+. .+.+ ..+|..+ ..+++|++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccC
Confidence 110 0001 0234444 4577888888888
Q ss_pred CccccCCC---ccccCCCCCcEEEccCCccCccCC--cccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCc
Q 037195 245 NRLEGPLP---PSLVNCRHLEVIDVGNNQINDTFP--HWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319 (502)
Q Consensus 245 n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n 319 (502)
|.+.+..| ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|++++. |..+ ..+++|++|++++|
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~--~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSC--QWPEKMRFLNLSST 420 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCC--CCCTTCCEEECTTS
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-Chhh--cccccccEEECCCC
Confidence 88876543 236677888888888888865432 4567788888888888888743 3333 45778888888888
Q ss_pred cCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCC
Q 037195 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSS 399 (502)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 399 (502)
+++.. |..+ .++|++|++++|++++.+ +.+++|++|+|++|+++ .+|. ...+++|++|++++
T Consensus 421 ~l~~l-~~~~-----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 421 GIRVV-KTCI-----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISR 482 (549)
T ss_dssp CCSCC-CTTS-----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCS
T ss_pred Ccccc-cchh-----------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCC
Confidence 87643 2211 468999999999998653 57899999999999998 6776 45789999999999
Q ss_pred CCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 400 NKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 400 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
|++++.+|..+..++.|+. ..+.+|++.|+++
T Consensus 483 N~l~~~~~~~~~~l~~L~~------------L~l~~N~~~~~~~ 514 (549)
T 2z81_A 483 NQLKSVPDGIFDRLTSLQK------------IWLHTNPWDCSCP 514 (549)
T ss_dssp SCCCCCCTTGGGGCTTCCE------------EECCSSCBCCCHH
T ss_pred CccCCcCHHHHhcCcccCE------------EEecCCCccCCCc
Confidence 9999888888887765543 3467888888765
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-40 Score=349.72 Aligned_cols=361 Identities=19% Similarity=0.266 Sum_probs=296.5
Q ss_pred CChhhhhCCCCCcEEEccCCcccc-----------------cCCcCCC--CCCCCCEEeccCCcCCccCCcccCCCCCCC
Q 037195 15 IPASLGNDITQLAYLDLSFNSFSG-----------------HIPSSFS--NLQQLRLLDLRYNNFVGKIPDIFTNLTRLS 75 (502)
Q Consensus 15 ip~~~~~~~~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 75 (502)
+|..+. ++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|+
T Consensus 440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 888888 89999999999999998 3899988 999999999999999999999999999999
Q ss_pred EEEcccCc-Ccc-cCChhhhccc-CCeeccccchhhhhhccCcccEEECCCCcCcccCC----CCCCCCceEeCcCCcCC
Q 037195 76 YLGLGGNQ-LIG-SIPSSIFELL-NLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH----LPWKNLEYLHLDSNLLQ 148 (502)
Q Consensus 76 ~L~L~~n~-l~~-~~p~~~~~l~-~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~ 148 (502)
+|+|++|+ +++ .+|..++.+. .+. .+++|++|++++|.++.++. ..+++|++|++++|.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~------------~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDED------------TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTT------------TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred EEECcCCCCcccccchHHHHhhhhccc------------ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 99999998 887 8999888762 111 22699999999999997766 47899999999999998
Q ss_pred ccCCCC--CCCccEEEccCCcCcccCCccccCCCC-CCEEECCCCcCcccccccccccc---ccEEEccCCccCCCCCCe
Q 037195 149 GSLLNL--PPHMREFSISRNNLTGEIPSSFCNLSY-IRFFDSSNNSLSGQILQCLGNST---LDTLDLGMNNFQDMRMNK 222 (502)
Q Consensus 149 ~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~---L~~L~l~~n~~~~~~~~~ 222 (502)
.++.. +++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+.... |+.|++++|.+.....
T Consensus 587 -~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-- 661 (876)
T 4ecn_A 587 -HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-- 661 (876)
T ss_dssp -BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS--
T ss_pred -cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc--
Confidence 55433 789999999999999 88888999999 999999999998 5566655443 9999998887753210
Q ss_pred eeccCccchh--cCCCccEEeccCCccccCCCcc-ccCCCCCcEEEccCCccCccCCcccCCC-------CCCCEEEccC
Q 037195 223 FSGSLPQTFA--KSCVLVSLNLNGNRLEGPLPPS-LVNCRHLEVIDVGNNQINDTFPHWLDVL-------PELQVLTLRS 292 (502)
Q Consensus 223 ~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~l~~ 292 (502)
.++..+. .+++|+.|++++|.+.. +|.. +..+++|+.|++++|.+....+..+... ++|+.|++++
T Consensus 662 ---~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 662 ---NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp ---SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ---cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence 1122222 34589999999999994 5554 4589999999999999984433333322 3999999999
Q ss_pred CcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccC------CcccccchhhhcCCC
Q 037195 293 NRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSS------NRFQGEILEVLGKLN 366 (502)
Q Consensus 293 n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~ 366 (502)
|+++ .+|..+....+++|+.|+|++|++++ +|..+ ..+++|+.|+|++ |++.+.+|..++.++
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l---------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP---------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG---------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh---------hcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 9998 44444421368999999999999998 56554 3489999999976 888899999999999
Q ss_pred CCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcc
Q 037195 367 SLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA 411 (502)
Q Consensus 367 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 411 (502)
+|+.|+|++|++ +.+|..+. ++|+.|||++|++...-+..+.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 999999999999 58898875 6999999999999865555444
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=337.13 Aligned_cols=385 Identities=19% Similarity=0.201 Sum_probs=305.1
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+++..|..+. .+++|++|++++|.+++..|..|.++++|++|++++|++.+..+..++++++|++|+++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred ceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 68999999999865555666 89999999999999998878899999999999999999986666679999999999999
Q ss_pred cCcCcc-cCChhhhcccCCeec--------cccchhhhhhccCcc----cEEECCCCcCcccCCCCC--CCCceEeCcCC
Q 037195 81 GNQLIG-SIPSSIFELLNLTFA--------ISVAAWMWDIGVHTL----IYLELSRNFLTNIDHLPW--KNLEYLHLDSN 145 (502)
Q Consensus 81 ~n~l~~-~~p~~~~~l~~L~~~--------~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n 145 (502)
+|.+.+ .+|..++++++|+.. +..+..+..+ ++| ++|++++|.++...+..+ .+|++|++++|
T Consensus 133 ~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH--HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCccceecChhhhcccCCCCEEeCcCCccceecHHHccch--hccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 999986 479999999999882 2334556666 777 889999998888766332 35777776665
Q ss_pred cC----------------------------------------------------------CccCCC---CCCCccEEEcc
Q 037195 146 LL----------------------------------------------------------QGSLLN---LPPHMREFSIS 164 (502)
Q Consensus 146 ~l----------------------------------------------------------~~~~~~---~~~~L~~L~l~ 164 (502)
.. .+..+. .+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 21 111111 15778888888
Q ss_pred CCcCcccCCccccCCCCCCEEECCCCcCccccccc--------------------cccccccEEEccCCccCCCCCCeee
Q 037195 165 RNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQC--------------------LGNSTLDTLDLGMNNFQDMRMNKFS 224 (502)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------------------~~~~~L~~L~l~~n~~~~~~~~~~~ 224 (502)
+|.++ .+|..+..+ +|+.|++++|.+....... .....|+.|++++|.++..
T Consensus 291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~------ 362 (570)
T 2z63_A 291 SVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK------ 362 (570)
T ss_dssp SCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE------
T ss_pred Cccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc------
Confidence 88777 466666666 7777777777666322211 1112255555555544321
Q ss_pred ccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCC-cccCCCCCCCEEEccCCcCcccCCCCC
Q 037195 225 GSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFP-HWLDVLPELQVLTLRSNRFRGPIDDTK 303 (502)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~ 303 (502)
+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 12366788899999999999999865544 8999999999999999987765 578899999999999999998877766
Q ss_pred CCCCCCCccEEEccCccCC-CCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCC
Q 037195 304 TRVPFPKLRIIDLSYNRFT-GVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGI 382 (502)
Q Consensus 304 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 382 (502)
..+++|++|++++|.+. +.+|..+ ..+++|++|++++|++++..|..++.+++|+.|++++|++++..
T Consensus 442 --~~l~~L~~L~l~~n~l~~~~~p~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 442 --NGLSSLEVLKMAGNSFQENFLPDIF---------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp --TTCTTCCEEECTTCEEGGGEECSCC---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --hcCCcCcEEECcCCcCccccchhhh---------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 66899999999999987 4566544 34899999999999999988999999999999999999999888
Q ss_pred chhccCCCCCCEEeCCCCCCCccCch
Q 037195 383 PSSLRNLTELESLDLSSNKLAGRIPT 408 (502)
Q Consensus 383 p~~l~~l~~L~~L~ls~n~l~~~~p~ 408 (502)
|..+..+++|++|++++|++++..|.
T Consensus 511 ~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HHHhhcccCCcEEEecCCcccCCCcc
Confidence 88899999999999999999988774
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=338.93 Aligned_cols=354 Identities=21% Similarity=0.252 Sum_probs=192.1
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
++||+++|+++ .+|..++ ++|++|++++|.+.+..|..|.++++|++|++++|++++..|++|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 56788888876 5776654 6788888888888766666778888888888888888777777888888888888888
Q ss_pred CcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccC-C---CCCCCCceEeCcCCcCCccCCCCCCC
Q 037195 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNID-H---LPWKNLEYLHLDSNLLQGSLLNLPPH 157 (502)
Q Consensus 82 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~---~~~~~L~~L~l~~n~l~~~~~~~~~~ 157 (502)
|+++ .+|.. .+ ++|++|++++|.+++.. + ..+++|++|++++|.+.+.....+++
T Consensus 79 N~l~-~lp~~--~l------------------~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 137 (520)
T 2z7x_B 79 NKLV-KISCH--PT------------------VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137 (520)
T ss_dssp SCCC-EEECC--CC------------------CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTT
T ss_pred Ccee-ecCcc--cc------------------CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcccccc
Confidence 8877 56655 44 55555666655555432 1 24555555555555555433333444
Q ss_pred c--cEEEccCCcC--cccCCccccC--------------------------CCCCCEEECCCCc-------Ccccccccc
Q 037195 158 M--REFSISRNNL--TGEIPSSFCN--------------------------LSYIRFFDSSNNS-------LSGQILQCL 200 (502)
Q Consensus 158 L--~~L~l~~n~l--~~~~~~~l~~--------------------------l~~L~~L~l~~n~-------l~~~~~~~~ 200 (502)
| +.|++++|.+ .+..|..+.. +++|+.+++++|. +.+.++...
T Consensus 138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 217 (520)
T 2z7x_B 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217 (520)
T ss_dssp SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGG
T ss_pred ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhc
Confidence 4 5555555555 3333333332 3333344433332 111111100
Q ss_pred c---------------------------cccccEEEccCCccCCCCCCeeeccCccch-----hcCCC------------
Q 037195 201 G---------------------------NSTLDTLDLGMNNFQDMRMNKFSGSLPQTF-----AKSCV------------ 236 (502)
Q Consensus 201 ~---------------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-----~~l~~------------ 236 (502)
. ...|+.|++++| .+.|.+|..+ ..++.
T Consensus 218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~ 289 (520)
T 2z7x_B 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV--------KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289 (520)
T ss_dssp GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE--------EEESCCCCCCCCCCSCCCCEEEEEEEEECCCC
T ss_pred cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc--------cccCccccchhhcccccCceeEecccccccee
Confidence 0 112444444333 2333334333 33333
Q ss_pred --------------ccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCccc--CC
Q 037195 237 --------------LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGP--ID 300 (502)
Q Consensus 237 --------------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~ 300 (502)
|+.|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 334444444332211 013455566666666666555555555566666666666665542 11
Q ss_pred CCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCC
Q 037195 301 DTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTG 380 (502)
Q Consensus 301 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 380 (502)
..+ ..+++|++|++++|.+.+.+|.... ..+++|++|++++|++++..|..+. ++|+.|++++|+++
T Consensus 368 ~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 368 EMT--TQMKSLQQLDISQNSVSYDEKKGDC--------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK- 434 (520)
T ss_dssp HHH--TTCTTCCEEECCSSCCBCCGGGCSC--------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred HHH--hhCCCCCEEECCCCcCCcccccchh--------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence 222 3355666666666665554443211 1245566666666666555444432 45666666666665
Q ss_pred CCchhccCCCCCCEEeCCCCCCC
Q 037195 381 GIPSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 381 ~~p~~l~~l~~L~~L~ls~n~l~ 403 (502)
.+|..+..+++|++|++++|+++
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccchhhhcCCCCCEEECCCCcCC
Confidence 55555555666666666666665
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.2e-40 Score=335.09 Aligned_cols=375 Identities=21% Similarity=0.217 Sum_probs=277.2
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|++|+|++|.+++..|..+. .+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|.. .+++|++|+++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred ccEEECCCCcccccChhhcc-ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 68999999999876666777 8999999999999999888999999999999999999998 56665 89999999999
Q ss_pred cCcCcc-cCChhhhcccCCeecc----cc-chhhhhhccCcc--cEEECCCCcC--cccCCCCC----------------
Q 037195 81 GNQLIG-SIPSSIFELLNLTFAI----SV-AAWMWDIGVHTL--IYLELSRNFL--TNIDHLPW---------------- 134 (502)
Q Consensus 81 ~n~l~~-~~p~~~~~l~~L~~~~----~~-~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~---------------- 134 (502)
+|.+++ .+|..++.+.+|+... .+ ...+..+ ++| ++|++++|.+ .+..+..+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccchhhcccc--ccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 999986 5788999986666511 11 1223333 555 7777766666 33322222
Q ss_pred -------------CCCceEeCcCCc-------CCccCCC--C---------------------------CCCccEEEccC
Q 037195 135 -------------KNLEYLHLDSNL-------LQGSLLN--L---------------------------PPHMREFSISR 165 (502)
Q Consensus 135 -------------~~L~~L~l~~n~-------l~~~~~~--~---------------------------~~~L~~L~l~~ 165 (502)
++|+.+++++|. +.+..+. . .++|++|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 222233333222 0000000 0 12556666666
Q ss_pred CcCcccCCccc-----cCCCCCCEEECCCCcCcccccccc----ccccccEEEccCCccCCCCCCeeeccCccchhcCCC
Q 037195 166 NNLTGEIPSSF-----CNLSYIRFFDSSNNSLSGQILQCL----GNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCV 236 (502)
Q Consensus 166 n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~ 236 (502)
|.+++.+|..+ ..+++|+.+++++|.+ ..+...+ ....++.|++++|.+.... ....+++
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~----------~~~~l~~ 325 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML----------CPSKISP 325 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC----------CCSSCCC
T ss_pred ccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc----------chhhCCc
Confidence 66665556555 5566666666666655 1111111 1133677777666654321 1146788
Q ss_pred ccEEeccCCccccCCCccccCCCCCcEEEccCCccCc--cCCcccCCCCCCCEEEccCCcCcccCCC-CCCCCCCCCccE
Q 037195 237 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIND--TFPHWLDVLPELQVLTLRSNRFRGPIDD-TKTRVPFPKLRI 313 (502)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~ 313 (502)
|++|++++|.+++..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.++. .+ ..+++|++
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--~~l~~L~~ 403 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--SWTKSLLS 403 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC--CCCTTCCE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh--ccCccCCE
Confidence 9999999999999889999999999999999999986 5567889999999999999999984443 34 56899999
Q ss_pred EEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchh-ccCCCCC
Q 037195 314 IDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSS-LRNLTEL 392 (502)
Q Consensus 314 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L 392 (502)
|++++|++++..|..+ .++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|
T Consensus 404 L~Ls~N~l~~~~~~~l-----------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCL-----------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp EECCSSCCCGGGGGSC-----------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred EECcCCCCCcchhhhh-----------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 9999999987766543 378999999999999 67777779999999999999999 56654 8999999
Q ss_pred CEEeCCCCCCCccCc
Q 037195 393 ESLDLSSNKLAGRIP 407 (502)
Q Consensus 393 ~~L~ls~n~l~~~~p 407 (502)
++|++++|++++..+
T Consensus 471 ~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 471 QKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred cEEECcCCCCcccCC
Confidence 999999999998665
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-39 Score=323.33 Aligned_cols=364 Identities=23% Similarity=0.242 Sum_probs=293.7
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccC-CcccCCCCCCCEEEcc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKI-PDIFTNLTRLSYLGLG 80 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~ 80 (502)
+.++.+++.++ .+|. +. ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +.+|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP---AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC---TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-CC---CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34667777765 6676 33 78999999999998888888999999999999999887544 6779999999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccC-----CCCCCCCceEeCcCCcCCccCCC--
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNID-----HLPWKNLEYLHLDSNLLQGSLLN-- 153 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~n~l~~~~~~-- 153 (502)
+|.+++..|..+..+ ++|++|++++|.+++.. ...+++|++|++++|.+.+..+.
T Consensus 88 ~n~l~~~~~~~~~~l------------------~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 88 YNQFLQLETGAFNGL------------------ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp TCTTCEECTTTTTTC------------------TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG
T ss_pred CCccCccChhhccCc------------------ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc
Confidence 999987778888877 88999999999988632 24678899999999998877554
Q ss_pred --CCCCccEEEccCCcCcccCCccccCC--CCCCEEECCCCcCccccccccc---------cccccEEEccCCccCCCCC
Q 037195 154 --LPPHMREFSISRNNLTGEIPSSFCNL--SYIRFFDSSNNSLSGQILQCLG---------NSTLDTLDLGMNNFQDMRM 220 (502)
Q Consensus 154 --~~~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~---------~~~L~~L~l~~n~~~~~~~ 220 (502)
.+++|++|++++|.+++..+..+..+ .+|+.+++++|.+.+..+..+. ...|+.|++++|.++
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---- 225 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK---- 225 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC----
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc----
Confidence 27889999999999988878777665 6788999999988775544322 234889999666554
Q ss_pred CeeeccCccchhcC---CCccEEeccCCccccCC----------Ccccc--CCCCCcEEEccCCccCccCCcccCCCCCC
Q 037195 221 NKFSGSLPQTFAKS---CVLVSLNLNGNRLEGPL----------PPSLV--NCRHLEVIDVGNNQINDTFPHWLDVLPEL 285 (502)
Q Consensus 221 ~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~----------~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 285 (502)
+..|..+... .+++.+++++|...+.. +..+. ..++|++|++++|.+.+..+..+..+++|
T Consensus 226 ----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 301 (455)
T 3v47_A 226 ----ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301 (455)
T ss_dssp ----HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ----ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC
Confidence 3444444433 77889999888654321 11122 23689999999999999889999999999
Q ss_pred CEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCC
Q 037195 286 QVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKL 365 (502)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 365 (502)
++|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+ ..+++|++|+|++|++++..|..+..+
T Consensus 302 ~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 302 EQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRMF---------ENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGGG---------TTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhHh---------cCcccCCEEECCCCcccccChhhcccc
Confidence 999999999998877766 668999999999999987766654 348999999999999998889999999
Q ss_pred CCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCc
Q 037195 366 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 366 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 407 (502)
++|++|++++|++++..+..+..+++|++|++++|++++.+|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999997777778999999999999999998887
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-39 Score=331.35 Aligned_cols=152 Identities=23% Similarity=0.218 Sum_probs=119.6
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+++|+++|+++ .+|..++ ++|++|++++|.+++..+..|.++++|++|++++|++++..|++|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 57899999987 5887665 7899999999999877777899999999999999999988889999999999999999
Q ss_pred CcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC----CCCCCCceEeCcCCcCCccCCCCCCC
Q 037195 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH----LPWKNLEYLHLDSNLLQGSLLNLPPH 157 (502)
Q Consensus 82 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~ 157 (502)
|+++ .+|.. .+ ++|++|++++|.+++++. ..+++|++|++++|.+++.....+++
T Consensus 110 N~l~-~lp~~--~l------------------~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 168 (562)
T 3a79_B 110 NRLQ-NISCC--PM------------------ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168 (562)
T ss_dssp SCCC-EECSC--CC------------------TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTT
T ss_pred CcCC-ccCcc--cc------------------ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhh
Confidence 9988 67765 44 778888888888777542 35677888888888777654444555
Q ss_pred c--cEEEccCCcC--cccCCccccC
Q 037195 158 M--REFSISRNNL--TGEIPSSFCN 178 (502)
Q Consensus 158 L--~~L~l~~n~l--~~~~~~~l~~ 178 (502)
| ++|++++|.+ ++..|..+..
T Consensus 169 L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 169 LHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp SCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred ceeeEEEeecccccccccCcccccc
Confidence 5 7888877777 5555555443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-38 Score=319.75 Aligned_cols=353 Identities=20% Similarity=0.222 Sum_probs=297.9
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccC-CcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHI-PSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGL 79 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 79 (502)
+++|+|++|.+++..|..+. ++++|++|++++|.+.+.+ +..|.++++|++|++++|++.+..|.+|+++++|++|++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp CCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred cCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 68999999999887788888 8999999999999987544 667999999999999999999888999999999999999
Q ss_pred ccCcCcccCChh--hhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC----CCCCCCceEeCcCCcCCccCCC
Q 037195 80 GGNQLIGSIPSS--IFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH----LPWKNLEYLHLDSNLLQGSLLN 153 (502)
Q Consensus 80 ~~n~l~~~~p~~--~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~~~ 153 (502)
++|.+++.+|.. +..+ ++|++|++++|.+++..+ ..+++|++|++++|.+.+..+.
T Consensus 111 ~~n~l~~~~~~~~~~~~l------------------~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPL------------------TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTSCCBTHHHHSSTTTTC------------------TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred CCCCCCccccCcccccCc------------------ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 999998655554 6655 899999999999998865 3578999999999999987665
Q ss_pred C-----CCCccEEEccCCcCcccCCccc--------cCCCCCCEEECCCCcCcccccccccc----ccccEEEccCCccC
Q 037195 154 L-----PPHMREFSISRNNLTGEIPSSF--------CNLSYIRFFDSSNNSLSGQILQCLGN----STLDTLDLGMNNFQ 216 (502)
Q Consensus 154 ~-----~~~L~~L~l~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~l~~~~~~~~~~----~~L~~L~l~~n~~~ 216 (502)
. ..+|+.+++++|.+.+..+..+ ..+++|+.|++++|.+++..+..+.. ..++.+++++|...
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 4 3688999999999986555433 35688999999999999877665543 44999999888654
Q ss_pred CC--CCCeeeccCccchhc--CCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccC
Q 037195 217 DM--RMNKFSGSLPQTFAK--SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRS 292 (502)
Q Consensus 217 ~~--~~~~~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 292 (502)
.. ....+....+..+.. .++|+.+++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 32 122222222233333 36899999999999999999999999999999999999998899999999999999999
Q ss_pred CcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEe
Q 037195 293 NRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLN 372 (502)
Q Consensus 293 n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 372 (502)
|.+++..+..+ ..+++|++|++++|++++..|..+ ..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 333 N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 333 NFLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSF---------LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp SCCCEECGGGG--TTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CccCCcChhHh--cCcccCCEEECCCCcccccChhhc---------cccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 99988777666 668999999999999998877665 3489999999999999988888889999999999
Q ss_pred CcCCcCCCCCc
Q 037195 373 ISHNNLTGGIP 383 (502)
Q Consensus 373 L~~N~l~~~~p 383 (502)
+++|++++..|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 99999997666
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-38 Score=328.71 Aligned_cols=375 Identities=20% Similarity=0.199 Sum_probs=266.0
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCc-cCCcccCCCCCCCEEEc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVG-KIPDIFTNLTRLSYLGL 79 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L 79 (502)
|++|+|++|.+++..|..+. .+++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..|..++++++|++|++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred ccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 57888888888876666676 78888888888888886666668888888888888888875 35667888888888888
Q ss_pred ccCcCcccCC-hhhhcccCCee--------ccccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcC
Q 037195 80 GGNQLIGSIP-SSIFELLNLTF--------AISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLL 147 (502)
Q Consensus 80 ~~n~l~~~~p-~~~~~l~~L~~--------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l 147 (502)
++|.+.+.+| ..+..+.+|+. .+..|..+..+ ++|++|++++|.+...+. ..+++|++|++++|.+
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI--RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC--SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc--ccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 8887444555 46777776666 23345555544 555555555555443332 1345555555555555
Q ss_pred CccC------CCCCCCccEEE----------------------------ccCCcCcccCC------cc------------
Q 037195 148 QGSL------LNLPPHMREFS----------------------------ISRNNLTGEIP------SS------------ 175 (502)
Q Consensus 148 ~~~~------~~~~~~L~~L~----------------------------l~~n~l~~~~~------~~------------ 175 (502)
++.. ...+++|+.|+ +++|.+.+... ..
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 5421 11133444444 44443322100 00
Q ss_pred -----------------ccCCCCCCEEECCCCcCccccccccccc-cccEEEccCCccCCCCCCeeeccCc---cchhcC
Q 037195 176 -----------------FCNLSYIRFFDSSNNSLSGQILQCLGNS-TLDTLDLGMNNFQDMRMNKFSGSLP---QTFAKS 234 (502)
Q Consensus 176 -----------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l 234 (502)
+....+|+.|++++|.+...+...+... .|+.|++++|.+. +.+| ..+..+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~~~~l 360 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV--------EEYLKNSACKGAW 360 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC--------HHHHHHHTCTTSS
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc--------cccccchhhhhcc
Confidence 1112456666666666653333333333 3888888666554 3332 236778
Q ss_pred CCccEEeccCCccccCCC--ccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCcc
Q 037195 235 CVLVSLNLNGNRLEGPLP--PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 312 (502)
++|++|++++|.+++..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+++... .. .++|+
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~----~~~L~ 434 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI----PQTLE 434 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS----CTTCS
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-hh----cCCce
Confidence 999999999999986432 45889999999999999997 567888899999999999999875432 22 46899
Q ss_pred EEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 037195 313 IIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 392 (502)
Q Consensus 313 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 392 (502)
+|++++|++++... .+++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|
T Consensus 435 ~L~Ls~N~l~~~~~-------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 435 VLDVSNNNLDSFSL-------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp EEECCSSCCSCCCC-------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred EEECCCCChhhhcc-------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc
Confidence 99999999987542 2889999999999999 5555 4678999999999999998888889999999
Q ss_pred CEEeCCCCCCCccCc
Q 037195 393 ESLDLSSNKLAGRIP 407 (502)
Q Consensus 393 ~~L~ls~n~l~~~~p 407 (502)
++|++++|++.+..|
T Consensus 500 ~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 500 QKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEecCCCccCCCc
Confidence 999999999998877
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-37 Score=323.70 Aligned_cols=166 Identities=21% Similarity=0.257 Sum_probs=121.4
Q ss_pred ccCCCCCcEEEccCCccCccC-CcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCC-CCchhhhcC
Q 037195 255 LVNCRHLEVIDVGNNQINDTF-PHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTG-VLPIWYLHG 332 (502)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~ 332 (502)
+..+++|+.++++.+...... ...+..+++++.++++.|.+.+..+..+ ..+++|+.|++++|.+.. ..|..+
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~--- 490 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIF--- 490 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCC---
T ss_pred ccccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhh---
Confidence 344555555555555443322 2345666777777777777776666555 456778888888776433 333332
Q ss_pred CchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhccc
Q 037195 333 NDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 412 (502)
Q Consensus 333 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~ 412 (502)
..+++|++|||++|++++..|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++..|+.+..
T Consensus 491 ------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 491 ------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp ------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred ------hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 34789999999999999988999999999999999999999888888999999999999999999888888776
Q ss_pred C-CCCCccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 413 L-NYLSVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 413 l-~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
+ +.| ......+||+.|+|.
T Consensus 565 l~~~L------------~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 565 FPSSL------------AFLNLTQNDFACTCE 584 (635)
T ss_dssp CCTTC------------CEEECTTCCBCCSGG
T ss_pred hhCcC------------CEEEeeCCCCcccCC
Confidence 5 233 233567899999765
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-36 Score=305.92 Aligned_cols=339 Identities=26% Similarity=0.345 Sum_probs=274.4
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
++.|+++++.+. .+|. +. .+++|++|++++|.+.+.. . +.++++|++|++++|.+.+..+ ++++++|++|+++
T Consensus 48 l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 48 VTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp CCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred ccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 578899998886 4664 55 7899999999999988543 3 8899999999999999885544 8899999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCcCCcc-CCCCCCCc
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNLLQGS-LLNLPPHM 158 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~L 158 (502)
+|.+. .++. +..+ ++|++|++++|.+++.+. ..+++|++|++++ .+.+. ....+++|
T Consensus 121 ~n~l~-~~~~-~~~l------------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L 179 (466)
T 1o6v_A 121 NNQIT-DIDP-LKNL------------------TNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKPLANLTTL 179 (466)
T ss_dssp SSCCC-CCGG-GTTC------------------TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGGGTTCTTC
T ss_pred CCCCC-CChH-HcCC------------------CCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchhhccCCCC
Confidence 99888 4443 5554 899999999998888765 4688999999874 33332 23347899
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 159 REFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 159 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
++|++++|.+++. ..+..+++|+.|++++|.+.+..+ ++... |+.|++++|.++.+ ..+..+++|
T Consensus 180 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----------~~l~~l~~L 245 (466)
T 1o6v_A 180 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----------GTLASLTNL 245 (466)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----------GGGGGCTTC
T ss_pred CEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----------hhhhcCCCC
Confidence 9999999998854 357888999999999999887665 33344 99999988877643 246678889
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ + ..+++|+.|+++
T Consensus 246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~L~ 317 (466)
T 1o6v_A 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I--SNLKNLTYLTLY 317 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G--GGCTTCSEEECC
T ss_pred CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h--cCCCCCCEEECc
Confidence 999999999986544 8889999999999999977654 7889999999999999987654 2 568899999999
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeC
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 397 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 397 (502)
+|++++..|. ..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++
T Consensus 318 ~n~l~~~~~~-----------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 318 FNNISDISPV-----------SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp SSCCSCCGGG-----------GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCcCCCchhh-----------ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 9999877652 3489999999999999875 468889999999999999987776 788999999999
Q ss_pred CCCCCCc
Q 037195 398 SSNKLAG 404 (502)
Q Consensus 398 s~n~l~~ 404 (502)
++|++++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 9999986
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.9e-36 Score=312.85 Aligned_cols=387 Identities=20% Similarity=0.193 Sum_probs=280.3
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++|||++|.+++..+.+|. ++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+.+|.++++|++|+++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 58999999999855455566 89999999999999998778889999999999999999997777889999999999999
Q ss_pred cCcCcccCChhhhcccCCee---------ccccchhhhhhccCcccEEECCCCcCcccCCCCC-----------------
Q 037195 81 GNQLIGSIPSSIFELLNLTF---------AISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPW----------------- 134 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~---------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----------------- 134 (502)
+|++++..+..++.+++|+. ....|..+..+ ++|++|++++|.++++.+..+
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc--hhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999555566888888877 12345666666 889999998888766543110
Q ss_pred -------------CCCceEeCcCCcCCc----------------------------------------------------
Q 037195 135 -------------KNLEYLHLDSNLLQG---------------------------------------------------- 149 (502)
Q Consensus 135 -------------~~L~~L~l~~n~l~~---------------------------------------------------- 149 (502)
..++.+++.+|....
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 011122222221000
Q ss_pred -------c------------------------CCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccc
Q 037195 150 -------S------------------------LLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQ 198 (502)
Q Consensus 150 -------~------------------------~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 198 (502)
. .......++.|++.+|.+....+. .+..|+.+++..|...... .
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~-~ 366 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF-S 366 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC-C
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc-c
Confidence 0 000023455555555554432221 2333444444444433211 1
Q ss_pred ccccccccEEEccCCccCCC------------------CCCeeeccCccchhcCCCccEEeccCCccccCCC-ccccCCC
Q 037195 199 CLGNSTLDTLDLGMNNFQDM------------------RMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCR 259 (502)
Q Consensus 199 ~~~~~~L~~L~l~~n~~~~~------------------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~ 259 (502)
......|+.++++.|.+... ..+... ..+..+..+++|+.+++..+......+ ..+..++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccc
Confidence 11122244444444433210 111111 234456778889999999887765444 4578899
Q ss_pred CCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCc-ccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHH
Q 037195 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFR-GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQME 338 (502)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 338 (502)
+++.++++.|.+....+..+..+++++.|++++|.+. +..+..+ ..+++|++|+|++|++++..|..+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~~l~~L~~L~Ls~N~L~~l~~~~f--------- 514 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAF--------- 514 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT---------
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--hhccccCEEECCCCccCCcChHHH---------
Confidence 9999999999999988999999999999999999854 4456555 668999999999999998888765
Q ss_pred HHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCC-CCCCEEeCCCCCCCccC
Q 037195 339 RILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL-TELESLDLSSNKLAGRI 406 (502)
Q Consensus 339 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~n~l~~~~ 406 (502)
+.+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+ ++|++|++++|++.+..
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 348999999999999999999999999999999999999999999999888 68999999999998643
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-36 Score=310.78 Aligned_cols=358 Identities=18% Similarity=0.204 Sum_probs=238.0
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.+...+++++++|.++ .+|..+. ++|++|++++|.+.+..+.+|.++++|++|++++|++++..|..+..+
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 99 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN------ 99 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC------
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC------
Confidence 4556689999999999 5777664 899999999999998888899999999999999999997778888877
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccC-C---CCCCCccEEEccCCcCcccCCcccc
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSL-L---NLPPHMREFSISRNNLTGEIPSSFC 177 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~---~~~~~L~~L~l~~n~l~~~~~~~l~ 177 (502)
++|++|++++|.++.++...+++|++|++++|.+++.. + ..+++|++|++++|.+++.....+.
T Consensus 100 ------------~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 167 (562)
T 3a79_B 100 ------------QDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167 (562)
T ss_dssp ------------TTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGT
T ss_pred ------------CCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhh
Confidence 99999999999999988888999999999999998743 2 2389999999999999864333333
Q ss_pred CCCCCCEEECCCCcC--cccccccccc--------------------------cc-ccEEEccCCc--------------
Q 037195 178 NLSYIRFFDSSNNSL--SGQILQCLGN--------------------------ST-LDTLDLGMNN-------------- 214 (502)
Q Consensus 178 ~l~~L~~L~l~~n~l--~~~~~~~~~~--------------------------~~-L~~L~l~~n~-------------- 214 (502)
.+ +|+.|++++|.+ ++..+..+.. .. |+.+++++|.
T Consensus 168 ~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~ 246 (562)
T 3a79_B 168 HL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246 (562)
T ss_dssp TS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred hc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh
Confidence 33 449999999988 5554444332 11 4444444431
Q ss_pred -------------------------------cC--CCCCCeeeccCccch-----hcC----------------------
Q 037195 215 -------------------------------FQ--DMRMNKFSGSLPQTF-----AKS---------------------- 234 (502)
Q Consensus 215 -------------------------------~~--~~~~~~~~~~~~~~~-----~~l---------------------- 234 (502)
++ ++..+.+.|.+|..+ ..+
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 00 001122222333222 111
Q ss_pred ----CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccC--CCCCCCCCC
Q 037195 235 ----CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPI--DDTKTRVPF 308 (502)
Q Consensus 235 ----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l 308 (502)
.++++|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|++++.. +..+ ..+
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l 402 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--KNM 402 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--TTC
T ss_pred hhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh--cCC
Confidence 12333333333332111 0145667777777777777666677777777777777777776532 2222 456
Q ss_pred CCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccC
Q 037195 309 PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRN 388 (502)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 388 (502)
++|++|++++|++.+.+|.... ..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTC--------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCC--------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred CCCCEEECCCCcCCCccChhhh--------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence 7777777777777664554321 1256777777777777665555443 56777777777776 56665557
Q ss_pred CCCCCEEeCCCCCCCccCchh-cccCCCCC
Q 037195 389 LTELESLDLSSNKLAGRIPTQ-LASLNYLS 417 (502)
Q Consensus 389 l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~ 417 (502)
+++|++|++++|+++ .+|.. +..++.|+
T Consensus 472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp SCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred CCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 777777777777777 35544 55554443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-36 Score=302.98 Aligned_cols=354 Identities=22% Similarity=0.316 Sum_probs=236.9
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCC-------------CEEeccCCcCCccCCcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQL-------------RLLDLRYNNFVGKIPDI 67 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~~~~ 67 (502)
|++|++++|.+ +.+|.+++ ++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred chhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 57899999999 89999998 89999999999999999999999998865 999999999884 4542
Q ss_pred cCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCc
Q 037195 68 FTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNL 146 (502)
Q Consensus 68 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~ 146 (502)
.++|++|++++|.+++ +|..+..+..|...+.-...+... .++|++|++++|.+++++. ..+++|++|++++|.
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~-~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL-PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred ---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC-CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCc
Confidence 4789999999999984 776544333332211100111111 1578888888888877654 356788888888888
Q ss_pred CCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeecc
Q 037195 147 LQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGS 226 (502)
Q Consensus 147 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 226 (502)
+++ .+...++|++|++++|.+++ +| .+..+++|+.|++++|.+++.. ... ..|+.|++++|.++.
T Consensus 165 l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~-~~~--~~L~~L~l~~n~l~~--------- 229 (454)
T 1jl5_A 165 LKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLP-DLP--LSLESIVAGNNILEE--------- 229 (454)
T ss_dssp CSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCC-CCC--TTCCEEECCSSCCSS---------
T ss_pred Ccc-cCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCC-CCc--CcccEEECcCCcCCc---------
Confidence 776 44556688888888888875 44 5778888888888888877632 221 248888887776653
Q ss_pred CccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCC
Q 037195 227 LPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRV 306 (502)
Q Consensus 227 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 306 (502)
+| .+..+++|++|++++|.+++ +|. .+++|++|++++|.+.+ +|.. +++|++|++++|.+++....
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~----- 295 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL----- 295 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC-----
T ss_pred cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc-----
Confidence 33 26677888888888888875 343 23678888888888865 3332 36788888888888764211
Q ss_pred CCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhc
Q 037195 307 PFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSL 386 (502)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 386 (502)
.++|+.|++++|++++. +. ..++|++|++++|++++ +|.. +++|+.|++++|+++ .+|.
T Consensus 296 -~~~L~~L~l~~N~l~~i-~~------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 296 -PPNLYYLNASSNEIRSL-CD------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp -CTTCCEEECCSSCCSEE-CC------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred -CCcCCEEECcCCcCCcc-cC------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--
Confidence 25778888888877652 11 13578888888888886 4433 578888899888888 5666
Q ss_pred cCCCCCCEEeCCCCCCCc--cCchhcccC
Q 037195 387 RNLTELESLDLSSNKLAG--RIPTQLASL 413 (502)
Q Consensus 387 ~~l~~L~~L~ls~n~l~~--~~p~~~~~l 413 (502)
.+++|++|++++|++++ .+|.++..+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 46788889998888888 677777665
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=298.31 Aligned_cols=319 Identities=22% Similarity=0.219 Sum_probs=176.4
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+.++.+++.++ .+|..++ +++++|+|++|.+++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 35666666665 6776654 5788888888888877777888888888888888888877788888888888888888
Q ss_pred CcCcccCCh-hhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccE
Q 037195 82 NQLIGSIPS-SIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMRE 160 (502)
Q Consensus 82 n~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 160 (502)
|+++ .+|. .+..+ ++|++|++++|.++...+..+. .+++|++
T Consensus 90 n~l~-~~~~~~~~~l------------------~~L~~L~Ls~n~i~~~~~~~~~------------------~l~~L~~ 132 (477)
T 2id5_A 90 NRLK-LIPLGVFTGL------------------SNLTKLDISENKIVILLDYMFQ------------------DLYNLKS 132 (477)
T ss_dssp SCCC-SCCTTSSTTC------------------TTCCEEECTTSCCCEECTTTTT------------------TCTTCCE
T ss_pred CcCC-ccCcccccCC------------------CCCCEEECCCCccccCChhHcc------------------ccccCCE
Confidence 8887 4443 34544 6777777777766655432111 1344555
Q ss_pred EEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccE
Q 037195 161 FSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVS 239 (502)
Q Consensus 161 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~ 239 (502)
|++++|.+++..+..|..+++|+.|++++|.+++..+..+.... |+.|++++|.+.. ..+..+..+++|++
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA--------IRDYSFKRLYRLKV 204 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE--------ECTTCSCSCTTCCE
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE--------eChhhcccCcccce
Confidence 55555555555555556666666666666655544333333222 4444443332221 11223334444455
Q ss_pred EeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCc
Q 037195 240 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYN 319 (502)
Q Consensus 240 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n 319 (502)
|++++|...+.++.......+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~------------ 270 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--HE------------ 270 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--TT------------
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc--cc------------
Confidence 5554444433333333333345555555554443333344444555555555554444333333 23
Q ss_pred cCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCC
Q 037195 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSS 399 (502)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 399 (502)
+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 271 ---------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 271 ---------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp ---------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred ---------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 44444455555555444444555555555555555555544444445555555555555
Q ss_pred CCCCc
Q 037195 400 NKLAG 404 (502)
Q Consensus 400 n~l~~ 404 (502)
|++.+
T Consensus 330 N~l~c 334 (477)
T 2id5_A 330 NPLAC 334 (477)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 55543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.7e-35 Score=292.48 Aligned_cols=343 Identities=19% Similarity=0.194 Sum_probs=236.5
Q ss_pred CChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhc
Q 037195 15 IPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFE 94 (502)
Q Consensus 15 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 94 (502)
.+..+. ++++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++|.+++ ++ ++.
T Consensus 34 ~~~~~~-~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~ 104 (457)
T 3bz5_A 34 DTISEE-QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTP 104 (457)
T ss_dssp SEEEHH-HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred cccChh-HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCC
Confidence 344555 677888888888887743 4 577888888888888887753 3 7778888888888888774 33 444
Q ss_pred ccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCc
Q 037195 95 LLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPS 174 (502)
Q Consensus 95 l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 174 (502)
+ ++|++|++++|.+++++...+++|++|++++|.+++.....+++|++|++++|...+.+
T Consensus 105 l------------------~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 105 L------------------TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp C------------------TTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--
T ss_pred C------------------CcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--
Confidence 4 77888888888887776566778888888888887765555778888888888554444
Q ss_pred cccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCc
Q 037195 175 SFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPP 253 (502)
Q Consensus 175 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 253 (502)
.+..+++|+.|++++|.+++.. +.... |+.|++++|.++.+ .+..+++|+.|++++|++++ +|
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-----------~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-----------DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-----------ccccCCCCCEEECcCCcccc-cC-
Confidence 4667788888888888887643 33333 88888877776643 14566778888888888876 44
Q ss_pred cccCCCCCcEEEccCCccCccCCcccCCCC-------CCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCc
Q 037195 254 SLVNCRHLEVIDVGNNQINDTFPHWLDVLP-------ELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLP 326 (502)
Q Consensus 254 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 326 (502)
+..+++|+.|++++|.+.+..+..+..+. +|+.|++++|.+.+.++. ..+++|+.|++++|...+.+|
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEE
T ss_pred -ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceec
Confidence 67788888888888888776544333332 344555555555444432 347888888888888777776
Q ss_pred hhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCch--h----------ccCCCCCCE
Q 037195 327 IWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPS--S----------LRNLTELES 394 (502)
Q Consensus 327 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--~----------l~~l~~L~~ 394 (502)
........+. .+.+++|++|++++|++++. .++.+++|+.|++++|++++ ++. . ...+..|+.
T Consensus 304 ~~~~~L~~L~-l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-l~~L~~L~l~~n~l~g~~~~~~l~~ 378 (457)
T 3bz5_A 304 CQAAGITELD-LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPK 378 (457)
T ss_dssp CTTCCCSCCC-CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-CTTGGGSSGGGTSEEEEEEEEECCC
T ss_pred cCCCcceEec-hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-ccccccccccCCcEEecceeeecCc
Confidence 5332111111 23467888888988888874 27788888999998888875 221 0 012345778
Q ss_pred EeCCCCCCCccCchhccc
Q 037195 395 LDLSSNKLAGRIPTQLAS 412 (502)
Q Consensus 395 L~ls~n~l~~~~p~~~~~ 412 (502)
+++++|+++|.+|..+..
T Consensus 379 l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp BCCBTTBEEEECCTTCBC
T ss_pred cccccCcEEEEcChhHhc
Confidence 888888888888876543
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=296.29 Aligned_cols=312 Identities=21% Similarity=0.190 Sum_probs=250.3
Q ss_pred CcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccc
Q 037195 26 LAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVA 105 (502)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~ 105 (502)
-+.++.+++.++ .+|..+. +++++|+|++|++.+..+.+|.++++|++|+|++|.+++..|..+..+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l---------- 79 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL---------- 79 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC----------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC----------
Confidence 357888888887 6676553 689999999999998888899999999999999999997778888776
Q ss_pred hhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEE
Q 037195 106 AWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFF 185 (502)
Q Consensus 106 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 185 (502)
++|++|++++|.++.++...+. .+++|++|++++|.+++..+..+..+++|+.|
T Consensus 80 --------~~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 80 --------FNLRTLGLRSNRLKLIPLGVFT------------------GLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp --------TTCCEEECCSSCCCSCCTTSST------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred --------ccCCEEECCCCcCCccCccccc------------------CCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 7788888887777665442211 12455666666666666666677777777777
Q ss_pred ECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEE
Q 037195 186 DSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVID 265 (502)
Q Consensus 186 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 265 (502)
++++|.+++.. +..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 134 ~l~~n~l~~~~-------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 134 EVGDNDLVYIS-------------------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp EECCTTCCEEC-------------------------------TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred ECCCCccceeC-------------------------------hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 77777665322 33455677888889999888877667788999999999
Q ss_pred ccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccC
Q 037195 266 VGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFA 345 (502)
Q Consensus 266 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~ 345 (502)
+++|.+.+..+..|..+++|++|++++|.+.+..+... ....+|+.|++++|++++..+..+ ..+++|+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~ 251 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLTAVPYLAV---------RHLVYLR 251 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCCSCCHHHH---------TTCTTCC
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCcccccCHHHh---------cCccccC
Confidence 99999988888888999999999999988877666554 335699999999999985433333 4489999
Q ss_pred eeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc
Q 037195 346 TIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418 (502)
Q Consensus 346 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 418 (502)
.|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..+..++.|+.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 9999999999888888999999999999999999888999999999999999999999877777787777765
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-34 Score=279.38 Aligned_cols=306 Identities=20% Similarity=0.219 Sum_probs=193.1
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecc
Q 037195 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAI 102 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~ 102 (502)
++++++|++++|.+....+..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..|..+..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------- 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV------- 116 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-------
Confidence 4666666666666663333335666666666666666665555566666666666666666664444445544
Q ss_pred ccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCccCCC---CCCCccEEEccCCcCcccCCccc
Q 037195 103 SVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQGSLLN---LPPHMREFSISRNNLTGEIPSSF 176 (502)
Q Consensus 103 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l 176 (502)
++|++|++++|.++.++. ..+++|++|++++|.+.+..+. .+++|++|++++|.+++. .+
T Consensus 117 -----------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~ 182 (390)
T 3o6n_A 117 -----------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DL 182 (390)
T ss_dssp -----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CG
T ss_pred -----------CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cc
Confidence 666666666666666554 2356666777777666654433 256777777777777753 24
Q ss_pred cCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCcccc
Q 037195 177 CNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV 256 (502)
Q Consensus 177 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 256 (502)
..+++|+.+++++|.+++... ...++.|++++|.++.+.. ...++|+.|++++|.+++. ..+.
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~~----~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVVRG-----------PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEEC----CSSCSEEECCSSCCCEEEC-----------CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred ccccccceeecccccccccCC----CCcceEEECCCCeeeeccc-----------cccccccEEECCCCCCccc--HHHc
Confidence 556778888888877654211 1236666666665543211 1124577777777777643 3566
Q ss_pred CCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchh
Q 037195 257 NCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQ 336 (502)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 336 (502)
.+++|++|++++|.+.+..+..+..+++|++|++++|++++... .. ..
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~~----------------------------- 293 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YG--QP----------------------------- 293 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SS--SC-----------------------------
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-cc--CC-----------------------------
Confidence 67777777777777766666667777777777777776654322 11 22
Q ss_pred HHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccC
Q 037195 337 MERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI 406 (502)
Q Consensus 337 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 406 (502)
+++|++|++++|+++ .+|..++.+++|+.|++++|++++. + +..+++|++|++++|++.+..
T Consensus 294 ----l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 294 ----IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ----CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ----CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 455556666666555 3455566778888888888888743 3 667888999999999988643
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-33 Score=282.80 Aligned_cols=333 Identities=27% Similarity=0.348 Sum_probs=278.1
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
++++++.|+++++.+. .+| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++. +..+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l------ 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP-LANL------ 111 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTC------
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh-hcCC------
Confidence 4678999999999988 455 48899999999999999985544 9999999999999999984 444 6665
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCcCCccCC-CCCCCccEEEccCCcCcccCCccccCC
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNLLQGSLL-NLPPHMREFSISRNNLTGEIPSSFCNL 179 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l 179 (502)
++|++|++++|.+++.++ ..+++|++|++++|.+.+... ..+++|++|++.+ .+.+. ..+..+
T Consensus 112 ------------~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l 176 (466)
T 1o6v_A 112 ------------TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDL--KPLANL 176 (466)
T ss_dssp ------------TTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCC--GGGTTC
T ss_pred ------------CCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCc--hhhccC
Confidence 999999999999998876 578999999999999886432 3389999999974 44433 238899
Q ss_pred CCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCC
Q 037195 180 SYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 258 (502)
Q Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 258 (502)
++|+.|++++|.+++.. .+.... |+.|++++|.++... | +..+++|+.|++++|.+.+. ..+..+
T Consensus 177 ~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~--~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 177 TTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--------P--LGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG--------G--GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred CCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCcccccc--------c--ccccCCCCEEECCCCCcccc--hhhhcC
Confidence 99999999999988653 244444 999999888776431 2 56788999999999999854 468899
Q ss_pred CCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHH
Q 037195 259 RHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQME 338 (502)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 338 (502)
++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ + ..+++|+.|++++|++.+..+.
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L~~n~l~~~~~~----------- 305 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L--AGLTALTNLELNENQLEDISPI----------- 305 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCSSCCSCCGGG-----------
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c--cCCCccCeEEcCCCcccCchhh-----------
Confidence 999999999999987655 8899999999999999987655 2 5689999999999999876542
Q ss_pred HHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc
Q 037195 339 RILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418 (502)
Q Consensus 339 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 418 (502)
..+++|++|++++|++++..+ ++.+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..++.|+.
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 458999999999999998766 78899999999999999865 478899999999999999998877 777777765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=291.52 Aligned_cols=329 Identities=20% Similarity=0.231 Sum_probs=201.2
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecc
Q 037195 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAI 102 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~ 102 (502)
+++++.+++++|.+....+..|..+++|++|++++|.+.+..|.+|+.+++|++|+|++|.+.+..|..++.+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------- 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV------- 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC-------
Confidence 4556666666666654433345556666666666666665555566666666666666666654444444444
Q ss_pred ccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCccCCCC---CCCccEEEccCCcCcccCCccc
Q 037195 103 SVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQGSLLNL---PPHMREFSISRNNLTGEIPSSF 176 (502)
Q Consensus 103 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~l 176 (502)
++|++|++++|.++.++. ..+++|++|++++|.+++..+.. +++|+.|++++|.+++.. +
T Consensus 123 -----------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~ 188 (597)
T 3oja_B 123 -----------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L 188 (597)
T ss_dssp -----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---G
T ss_pred -----------CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---h
Confidence 566666666666665554 23556666666666666554432 566777777777766532 4
Q ss_pred cCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCcccc
Q 037195 177 CNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV 256 (502)
Q Consensus 177 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 256 (502)
..+++|+.|++++|.+++... ...|+.|++++|.+..+. +.. .++|+.|++++|.+++ +..+.
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~~----~~~L~~L~ls~n~l~~~~-----~~~------~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVVR-----GPV------NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEEC----CTTCSEEECCSSCCCEEE-----CSC------CSCCCEEECCSSCCCC--CGGGG
T ss_pred hhhhhhhhhhcccCccccccC----CchhheeeccCCcccccc-----ccc------CCCCCEEECCCCCCCC--Chhhc
Confidence 456677777777776654211 112666666666554321 111 1457777777777764 24566
Q ss_pred CCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchh
Q 037195 257 NCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQ 336 (502)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 336 (502)
.+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++... .. ..
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~--~~----------------------------- 299 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YG--QP----------------------------- 299 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SS--SC-----------------------------
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-cc--cc-----------------------------
Confidence 77777777777777777767777777777777777777665322 11 22
Q ss_pred HHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCC
Q 037195 337 MERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 416 (502)
Q Consensus 337 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 416 (502)
+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++. | +..+++|+.|++++|++.+..+..+
T Consensus 300 ----l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~------ 365 (597)
T 3oja_B 300 ----IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRAL------ 365 (597)
T ss_dssp ----CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHH------
T ss_pred ----CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHH------
Confidence 455555566666555 3555567778888888888888744 3 5667889999999999886543322
Q ss_pred CccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 417 SVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
+..+....+.+++..|+.+
T Consensus 366 --------~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 366 --------FRNVARPAVDDADQHCKID 384 (597)
T ss_dssp --------TTTCCTTTBCCCCCCCCTT
T ss_pred --------HHHHhhhccccccccCCcc
Confidence 1223344566777788753
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.7e-33 Score=268.89 Aligned_cols=303 Identities=23% Similarity=0.381 Sum_probs=221.4
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.+++|+.|++++|.+. .++ .+..+++|++|++++|++.+. +. +..+++|++|++++|.++ .++ .+..+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l------ 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS-ALQNL------ 109 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTC------
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch-HHcCC------
Confidence 5778888888888887 344 378888888888888888743 33 888888888888888877 343 35544
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCC
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLS 180 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 180 (502)
++|++|++++|.+++.+. ..+++|++|++++| ...... ..+..++
T Consensus 110 ------------~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n---------------------~~~~~~-~~~~~l~ 155 (347)
T 4fmz_A 110 ------------TNLRELYLNEDNISDISPLANLTKMYSLNLGAN---------------------HNLSDL-SPLSNMT 155 (347)
T ss_dssp ------------TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTC---------------------TTCCCC-GGGTTCT
T ss_pred ------------CcCCEEECcCCcccCchhhccCCceeEEECCCC---------------------CCcccc-cchhhCC
Confidence 778888888887776554 24445555555544 333222 2355666
Q ss_pred CCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCC
Q 037195 181 YIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCR 259 (502)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 259 (502)
+|++|++++|.+.+..+ +.... |+.|++++|.+..+. . +..+++|+.+++++|.+.+..+ +..++
T Consensus 156 ~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 221 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS---------P-LASLTSLHYFTAYVNQITDITP--VANMT 221 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG---------G-GGGCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred CCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc---------c-ccCCCccceeecccCCCCCCch--hhcCC
Confidence 66666666666654433 22333 666666666554321 1 5567788899999888875443 77888
Q ss_pred CCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHH
Q 037195 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMER 339 (502)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 339 (502)
+|++|++++|.+.+..+ +..+++|++|++++|.+++.. . ...+++|++|++++|++++. +. +.
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~~-~~----------~~ 284 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--A--VKDLTKLKMLNVGSNQISDI-SV----------LN 284 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCC-GG----------GG
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--h--HhcCCCcCEEEccCCccCCC-hh----------hc
Confidence 99999999998876544 788899999999999887642 2 25688999999999988864 21 24
Q ss_pred HhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCC
Q 037195 340 ILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 340 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~ 403 (502)
.+++|++|++++|.+++..+..++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 58999999999999999999999999999999999999996666 888999999999999986
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.9e-32 Score=269.87 Aligned_cols=329 Identities=26% Similarity=0.344 Sum_probs=239.8
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
++.|++++|.+++ +|. ..++|++|++++|.+++ +|.. +++|++|++++|++.+ ++.. .++|++|+++
T Consensus 73 l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 139 (454)
T ss_dssp CSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred CCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence 4789999999874 554 23689999999999986 6653 4889999999999884 3322 2799999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCC--CCCc
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNL--PPHM 158 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L 158 (502)
+|.++ .+| +++.+ ++|++|++++|.+++++. ...+|++|++++|.+++. +.. +++|
T Consensus 140 ~n~l~-~lp-~~~~l------------------~~L~~L~l~~N~l~~lp~-~~~~L~~L~L~~n~l~~l-~~~~~l~~L 197 (454)
T 1jl5_A 140 NNQLE-KLP-ELQNS------------------SFLKIIDVDNNSLKKLPD-LPPSLEFIAAGNNQLEEL-PELQNLPFL 197 (454)
T ss_dssp SSCCS-SCC-CCTTC------------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSC-CCCTTCTTC
T ss_pred CCCCC-CCc-ccCCC------------------CCCCEEECCCCcCcccCC-CcccccEEECcCCcCCcC-ccccCCCCC
Confidence 99998 477 46666 899999999999998654 346999999999999874 333 8899
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 159 REFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 159 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
++|++++|.+++ +|.. .++|++|++++|.++ .++. +.... |+.|++++|.++.++ . ..++|
T Consensus 198 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~---------~---~~~~L 259 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLP---------D---LPPSL 259 (454)
T ss_dssp CEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCC---------S---CCTTC
T ss_pred CEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccc---------c---ccccc
Confidence 999999999885 4433 258999999999998 4444 44444 999999988877432 2 13679
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
+.|++++|.+.+ +|.. .++|++|++++|.+.+. +. ..++|++|++++|.+++... -.++|+.|+++
T Consensus 260 ~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~~------~~~~L~~L~Ls 325 (454)
T 1jl5_A 260 EALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLCD------LPPSLEELNVS 325 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEECC------CCTTCCEEECC
T ss_pred CEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcccC------CcCcCCEEECC
Confidence 999999999986 4443 47899999999998763 21 12689999999999986421 13589999999
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCC--CCchhccCC------
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTG--GIPSSLRNL------ 389 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l------ 389 (502)
+|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|++++ .+|..+..+
T Consensus 326 ~N~l~~-lp~~------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 326 NNKLIE-LPAL------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp SSCCSC-CCCC------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CCcccc-cccc------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 999986 4432 5889999999999985 554 47899999999999998 788888777
Q ss_pred -------CCCCEEeCCCCCCCc--cCchhcccC
Q 037195 390 -------TELESLDLSSNKLAG--RIPTQLASL 413 (502)
Q Consensus 390 -------~~L~~L~ls~n~l~~--~~p~~~~~l 413 (502)
++|++|++++|++++ .+|.++..+
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ---------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 899999999999997 788776654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-32 Score=269.88 Aligned_cols=306 Identities=21% Similarity=0.232 Sum_probs=250.9
Q ss_pred cccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccC
Q 037195 35 SFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVH 114 (502)
Q Consensus 35 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 114 (502)
......+..++++++|++|++++|.+.+. | .++.+++|++|++++|.+++ +| ++.+ +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l------------------~ 85 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQN------------------T 85 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTC------------------T
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccC------------------C
Confidence 33444455688899999999999999964 5 69999999999999999984 44 5555 8
Q ss_pred cccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcc
Q 037195 115 TLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSG 194 (502)
Q Consensus 115 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 194 (502)
+|++|++++|.+++.+...+++|++|++++|.+++.....+++|++|++++|.+++. .+..+++|++|++++|...+
T Consensus 86 ~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCC
T ss_pred CCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccc
Confidence 999999999999998777899999999999999987656689999999999999974 37889999999999996555
Q ss_pred cccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCc
Q 037195 195 QILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIND 273 (502)
Q Consensus 195 ~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 273 (502)
.+ .+.... |+.|++++|.++.+ | +..++.|+.|++++|.+++. .+..+++|++|++++|++.+
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~~l---------~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKITEL---------D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCCCC---------C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred cc--ccccCCcCCEEECCCCcccee---------c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 54 233444 99999998887753 2 56778899999999999865 38899999999999999987
Q ss_pred cCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE----------EccCccCCCCCchhhhcCCchhHHHHhcc
Q 037195 274 TFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII----------DLSYNRFTGVLPIWYLHGNDIQMERILTT 343 (502)
Q Consensus 274 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 343 (502)
+| +..+++|++|++++|++++..+. .+++|+.| ++++|.+.+.+|. ..+++
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-----------~~l~~ 287 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-----------EGCRK 287 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-----------TTCTT
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCCCCEEECCCCccCCcccc-----------ccccc
Confidence 45 88899999999999999986532 34555554 5555554444442 34799
Q ss_pred cCeeeccCCcccccchh--------hhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCc
Q 037195 344 FATIDLSSNRFQGEILE--------VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 344 L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
|+.|++++|...+.+|. .+..+++|+.|++++|++++ ++ +..+++|+.|++++|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 99999999987776654 25677899999999999997 43 8899999999999999996
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-31 Score=256.40 Aligned_cols=298 Identities=23% Similarity=0.278 Sum_probs=224.6
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
|+.|+++++.+. .+|. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+.. + .++..+++|++|+++
T Consensus 46 L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 46 ITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp CSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred ccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 689999999986 4554 66 799999999999999854 44 9999999999999999985 3 469999999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC--CCCCCCceEeCcCCcCCccCCCCCCCc
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH--LPWKNLEYLHLDSNLLQGSLLNLPPHM 158 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L 158 (502)
+|.+. .++. +..+ ++|++|++++|....... ..+++|++|++++|.+.+
T Consensus 119 ~n~i~-~~~~-~~~l------------------~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~--------- 169 (347)
T 4fmz_A 119 EDNIS-DISP-LANL------------------TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--------- 169 (347)
T ss_dssp TSCCC-CCGG-GTTC------------------TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC---------
T ss_pred CCccc-Cchh-hccC------------------CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC---------
Confidence 99988 4554 5554 999999999995443322 344555555555554442
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 159 REFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 159 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
..+ +..+++|+.|++++|.+.+..+ +.... |+.+++++|.++... .+..+++|
T Consensus 170 ------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L 223 (347)
T 4fmz_A 170 ------------VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT----------PVANMTRL 223 (347)
T ss_dssp ------------CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG----------GGGGCTTC
T ss_pred ------------chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc----------hhhcCCcC
Confidence 221 5556666666666666654433 22223 667777666554321 15667889
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.. .+ ..+++|+.|+++
T Consensus 224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~--~~l~~L~~L~L~ 295 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VL--NNLSQLNSLFLN 295 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GG--GGCTTCSEEECC
T ss_pred CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hh--cCCCCCCEEECc
Confidence 999999999885443 88899999999999998764 46888999999999999988752 22 568999999999
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCC
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLT 379 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 379 (502)
+|++.+..+..+ ..+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 296 ~n~l~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVI---------GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHH---------HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcCCCcChhHh---------hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999987766544 458999999999999998766 788999999999999986
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.1e-31 Score=254.87 Aligned_cols=300 Identities=20% Similarity=0.230 Sum_probs=179.3
Q ss_pred ccCChhhhhCCC-----CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCccc
Q 037195 13 GSIPASLGNDIT-----QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGS 87 (502)
Q Consensus 13 ~~ip~~~~~~~~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 87 (502)
+.+|..+...++ +++.++++++.++ .+|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|.+++.
T Consensus 17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp --------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc
Confidence 356766653333 6999999999987 6776663 6899999999999977788899999999999999999876
Q ss_pred CChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCc
Q 037195 88 IPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNN 167 (502)
Q Consensus 88 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 167 (502)
.|..+..+ ++|++|++++|.++.++...+ ++|++|++++|.
T Consensus 94 ~~~~~~~l------------------~~L~~L~L~~n~l~~l~~~~~---------------------~~L~~L~l~~n~ 134 (332)
T 2ft3_A 94 HEKAFSPL------------------RKLQKLYISKNHLVEIPPNLP---------------------SSLVELRIHDNR 134 (332)
T ss_dssp CGGGSTTC------------------TTCCEEECCSSCCCSCCSSCC---------------------TTCCEEECCSSC
T ss_pred CHhHhhCc------------------CCCCEEECCCCcCCccCcccc---------------------ccCCEEECCCCc
Confidence 67777776 788888888887776554332 345555555566
Q ss_pred CcccCCccccCCCCCCEEECCCCcCcc--ccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCC
Q 037195 168 LTGEIPSSFCNLSYIRFFDSSNNSLSG--QILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGN 245 (502)
Q Consensus 168 l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 245 (502)
+++..+..+..+++|+.|++++|.++. ..+..+....| ++|++++|
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L--------------------------------~~L~l~~n 182 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL--------------------------------NYLRISEA 182 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC--------------------------------SCCBCCSS
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc--------------------------------CEEECcCC
Confidence 665555567778888888888877753 22333322234 44444444
Q ss_pred ccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCC
Q 037195 246 RLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVL 325 (502)
Q Consensus 246 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 325 (502)
.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|+++ .+
T Consensus 183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSCCC-BC
T ss_pred CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCcCe-ec
Confidence 4432 222211 344444444444444444444444555555555554444333322 33444555555555444 23
Q ss_pred chhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC------CCCCCEEeCcCCcCC--CCCchhccCCCCCCEEeC
Q 037195 326 PIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK------LNSLKSLNISHNNLT--GGIPSSLRNLTELESLDL 397 (502)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~l 397 (502)
|..+ ..+++|++|++++|++++..+..|.. .+.|+.|++++|.+. +..|..|..+++|+.+++
T Consensus 257 p~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 257 PAGL---------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CTTG---------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred Chhh---------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 3222 22556666666666666554444433 356778888888776 566777888888888888
Q ss_pred CCCC
Q 037195 398 SSNK 401 (502)
Q Consensus 398 s~n~ 401 (502)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 8774
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-32 Score=260.59 Aligned_cols=258 Identities=31% Similarity=0.502 Sum_probs=221.2
Q ss_pred CCccEEEccCCcCcc--cCCccccCCCCCCEEECCC-CcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccch
Q 037195 156 PHMREFSISRNNLTG--EIPSSFCNLSYIRFFDSSN-NSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTF 231 (502)
Q Consensus 156 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~ 231 (502)
.++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+.... |++|++++|. +.+.+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--------l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--------VSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--------CEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe--------eCCcCCHHH
Confidence 468888888888887 7888888999999999984 888888887777766 9999996554 445678889
Q ss_pred hcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCC-CCCEEEccCCcCcccCCCCCCCCCCCC
Q 037195 232 AKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLP-ELQVLTLRSNRFRGPIDDTKTRVPFPK 310 (502)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~ 310 (502)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++..+..+ ..++
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~- 198 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN- 198 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-
Confidence 9999999999999999999999999999999999999999888999999988 99999999999998877766 3454
Q ss_pred ccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCC
Q 037195 311 LRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT 390 (502)
Q Consensus 311 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 390 (502)
|+.|++++|.+.+..|..+ ..+++|+.|++++|.+++.++. +..+++|++|++++|++++.+|..+..++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLF---------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp CSEEECCSSEEEECCGGGC---------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred ccEEECcCCcccCcCCHHH---------hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 9999999999998877655 3489999999999999977666 88899999999999999999999999999
Q ss_pred CCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCCCCCCC
Q 037195 391 ELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFPLSKSC 448 (502)
Q Consensus 391 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~~~~~c 448 (502)
+|++|++++|++++.+|.. ..+ ..+....+.+|+++||.|+. .|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l------------~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNL------------QRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTG------------GGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccccCCCC-ccc------------cccChHHhcCCCCccCCCCC-CC
Confidence 9999999999999988875 333 33445568899999998775 46
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.7e-30 Score=249.62 Aligned_cols=291 Identities=20% Similarity=0.197 Sum_probs=170.9
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 25 QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
+++.++++++.++ .+|..+. +++++|++++|++++..+.+|.++++|++|++++|.+++..|..+..+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------- 99 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--------- 99 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC---------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC---------
Confidence 7888888888887 5666553 678888998888887767788888899999998888886667777766
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCE
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRF 184 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 184 (502)
++|++|++++|.++.++...+ ++|++|++++|.+++..+..+..+++|+.
T Consensus 100 ---------~~L~~L~Ls~n~l~~l~~~~~---------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 100 ---------VKLERLYLSKNQLKELPEKMP---------------------KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp ---------TTCCEEECCSSCCSBCCSSCC---------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred ---------CCCCEEECCCCcCCccChhhc---------------------ccccEEECCCCcccccCHhHhcCCccccE
Confidence 777777777777665544322 34555555555565555556777777777
Q ss_pred EECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEE
Q 037195 185 FDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVI 264 (502)
Q Consensus 185 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (502)
|++++|.+.... ..+..+..+++|++|++++|.++. +|..+. ++|++|
T Consensus 150 L~l~~n~l~~~~-----------------------------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L 197 (330)
T 1xku_A 150 VELGTNPLKSSG-----------------------------IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL 197 (330)
T ss_dssp EECCSSCCCGGG-----------------------------BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred EECCCCcCCccC-----------------------------cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence 777777664310 112233334444444444444442 222221 445555
Q ss_pred EccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhccc
Q 037195 265 DVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTF 344 (502)
Q Consensus 265 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L 344 (502)
++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|+++ .+|..+ ..+++|
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~lp~~l---------~~l~~L 265 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLV-KVPGGL---------ADHKYI 265 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCS-SCCTTT---------TTCSSC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCCCEEECCCCcCc-cCChhh---------ccCCCc
Confidence 555555544444444555555555555555544433332 33444555555555444 223222 124555
Q ss_pred CeeeccCCcccccchhhhcC------CCCCCEEeCcCCcCCC--CCchhccCCCCCCEEeCCCCC
Q 037195 345 ATIDLSSNRFQGEILEVLGK------LNSLKSLNISHNNLTG--GIPSSLRNLTELESLDLSSNK 401 (502)
Q Consensus 345 ~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~ls~n~ 401 (502)
++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55555555555544444432 3667778888877753 456677777888888887774
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=3.5e-31 Score=260.47 Aligned_cols=285 Identities=21% Similarity=0.233 Sum_probs=207.5
Q ss_pred CCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCc
Q 037195 46 NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF 125 (502)
Q Consensus 46 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~ 125 (502)
.++++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l------------------~~L~~L~L~~n~ 104 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA------------------HTIQKLYMGFNA 104 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC------------------TTCCEEECCSSC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCC------------------CCcCEEECCCCC
Confidence 56899999999999986555668999999999999999986666677776 999999999999
Q ss_pred CcccCCC---CCCCCceEeCcCCcCCccCCC---CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccc
Q 037195 126 LTNIDHL---PWKNLEYLHLDSNLLQGSLLN---LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQC 199 (502)
Q Consensus 126 l~~~~~~---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 199 (502)
++++++. .+++|++|++++|.++..... .+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 105 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--- 181 (390)
T 3o6n_A 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--- 181 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---
T ss_pred CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---
Confidence 9988663 456677777776666643322 1455555555555555544445555555555555555544321
Q ss_pred cccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCccc
Q 037195 200 LGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279 (502)
Q Consensus 200 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 279 (502)
+..++.|+.+++++|.+.+ +...+.|++|++++|.+.....
T Consensus 182 -------------------------------~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~--- 222 (390)
T 3o6n_A 182 -------------------------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG--- 222 (390)
T ss_dssp -------------------------------GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC---
T ss_pred -------------------------------cccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc---
Confidence 2334567777777776653 2334567888888887755422
Q ss_pred CCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccch
Q 037195 280 DVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEIL 359 (502)
Q Consensus 280 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 359 (502)
...++|+.|++++|.+++.. .+ ..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++ ++
T Consensus 223 ~~~~~L~~L~l~~n~l~~~~--~l--~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~-~~ 288 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDTA--WL--LNYPGLVEVDLSYNELEKIMYHPF---------VKMQRLERLYISNNRLVA-LN 288 (390)
T ss_dssp CCCSSCCEEECCSSCCCCCG--GG--GGCTTCSEEECCSSCCCEEESGGG---------TTCSSCCEEECCSSCCCE-EE
T ss_pred cccccccEEECCCCCCcccH--HH--cCCCCccEEECCCCcCCCcChhHc---------cccccCCEEECCCCcCcc-cC
Confidence 22467888888888877541 22 557888888888888887766554 338899999999999986 45
Q ss_pred hhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCcc
Q 037195 360 EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 360 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 56678999999999999998 6788888999999999999999854
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.9e-31 Score=274.11 Aligned_cols=286 Identities=21% Similarity=0.223 Sum_probs=212.3
Q ss_pred CCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCc
Q 037195 46 NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF 125 (502)
Q Consensus 46 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~ 125 (502)
.+.+++.+++++|.+....+..+.++++|++|+|++|.+.+..|..+..+ ++|++|++++|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------~~L~~L~L~~n~ 110 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA------------------HTIQKLYMGFNA 110 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC------------------TTCCEEECCSSC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCC------------------CCCCEEECCCCc
Confidence 46889999999999987666778999999999999999997667788776 999999999999
Q ss_pred CcccCCC---CCCCCceEeCcCCcCCccCCC---CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccc
Q 037195 126 LTNIDHL---PWKNLEYLHLDSNLLQGSLLN---LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQC 199 (502)
Q Consensus 126 l~~~~~~---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 199 (502)
++++++. .+++|++|++++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--- 187 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--- 187 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---
Confidence 9988763 456677777776666644332 1455555555555555555555555555555555555544321
Q ss_pred cccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCccc
Q 037195 200 LGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWL 279 (502)
Q Consensus 200 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 279 (502)
+..++.|+.+++++|.+.+ +...+.|+.|++++|.+....+..
T Consensus 188 -------------------------------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~- 230 (597)
T 3oja_B 188 -------------------------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV- 230 (597)
T ss_dssp -------------------------------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC-
T ss_pred -------------------------------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc-
Confidence 2234567777777776653 334457888888888775443322
Q ss_pred CCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccch
Q 037195 280 DVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEIL 359 (502)
Q Consensus 280 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 359 (502)
.++|+.|++++|.+++. ..+ ..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+++ +|
T Consensus 231 --~~~L~~L~L~~n~l~~~--~~l--~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~-l~ 294 (597)
T 3oja_B 231 --NVELTILKLQHNNLTDT--AWL--LNYPGLVEVDLSYNELEKIMYHPF---------VKMQRLERLYISNNRLVA-LN 294 (597)
T ss_dssp --CSCCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSCCCEEESGGG---------TTCSSCCEEECTTSCCCE-EE
T ss_pred --CCCCCEEECCCCCCCCC--hhh--ccCCCCCEEECCCCccCCCCHHHh---------cCccCCCEEECCCCCCCC-CC
Confidence 35788888888888763 222 557888888888888887777655 348899999999999986 46
Q ss_pred hhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccC
Q 037195 360 EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI 406 (502)
Q Consensus 360 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 406 (502)
..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 66778999999999999999 78888899999999999999998653
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.6e-30 Score=249.76 Aligned_cols=293 Identities=19% Similarity=0.225 Sum_probs=191.5
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++++++++.++ .+|..++ +++++|++++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 578999999886 6787665 689999999999997777789999999999999999998889999999999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCCccCCCCCCC
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQGSLLNLPPH 157 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~ 157 (502)
+|.++ .+|..++ ++|++|++++|.++.... ..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 159 (330)
T 1xku_A 109 KNQLK-ELPEKMP--------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-------- 159 (330)
T ss_dssp SSCCS-BCCSSCC--------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--------
T ss_pred CCcCC-ccChhhc--------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--------
Confidence 99998 6776543 789999999999887765 345555555555554432
Q ss_pred ccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 158 MREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 158 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
.+..+..+..+++|+.|++++|.++....... ++|
T Consensus 160 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~----------------------------------~~L 194 (330)
T 1xku_A 160 -----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLP----------------------------------PSL 194 (330)
T ss_dssp -----------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC----------------------------------TTC
T ss_pred -----------cCcChhhccCCCCcCEEECCCCccccCCcccc----------------------------------ccC
Confidence 12455667778888888888887764322111 234
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. +|..+ ..+++|++|+++
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l--~~l~~L~~L~l~ 271 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL--ADHKYIQVVYLH 271 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTT--TTCSSCCEEECC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhh--ccCCCcCEEECC
Confidence 445555555444444445555555555555555544444445555555555555555542 22222 334555555555
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccc--cchhhhcCCCCCCEEeCcCCc
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQG--EILEVLGKLNSLKSLNISHNN 377 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~ 377 (502)
+|++++..+..+..... ....+.++.|++++|.+.. ..|..|..+++++.++|++|+
T Consensus 272 ~N~i~~~~~~~f~~~~~---~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGY---NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCCCCCTTSSSCSSC---CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCCccChhhcCCccc---ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55555433332211000 0114667778888887753 456778888889999998875
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=250.85 Aligned_cols=292 Identities=21% Similarity=0.251 Sum_probs=187.4
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++++++++.++ .+|..++ ++|++|++++|.+.+..+..|.++++|++|++++|++++..|.+|+++++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 578999999986 7887765 689999999999998778889999999999999999998889999999999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCC---CCCCCceEeCcCCcCCccCCCCCCC
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHL---PWKNLEYLHLDSNLLQGSLLNLPPH 157 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~ 157 (502)
+|.++ .+|..++ ++|++|++++|.++.++.. .+++|++|++++|.++.
T Consensus 111 ~n~l~-~l~~~~~--------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 161 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-------- 161 (332)
T ss_dssp SSCCC-SCCSSCC--------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG--------
T ss_pred CCcCC-ccCcccc--------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc--------
Confidence 99998 7776543 7899999999998877652 34555555555554431
Q ss_pred ccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 158 MREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 158 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
.+..+..+..+ +|+.|++++|.+++...... ..|+.|++++|.++.+ .+..+..+++|
T Consensus 162 -----------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~--------~~~~l~~l~~L 219 (332)
T 2ft3_A 162 -----------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAI--------ELEDLLRYSKL 219 (332)
T ss_dssp -----------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCC--------CTTSSTTCTTC
T ss_pred -----------CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCcc--------CHHHhcCCCCC
Confidence 12445556666 78888888887765322111 1244444433333221 12334444455
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..+....
T Consensus 220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~---------- 288 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG---------- 288 (332)
T ss_dssp SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS----------
T ss_pred CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc----------
Confidence 55555555555444444555555555555555553 3344444555555555555555443332221100
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccc--ccchhhhcCCCCCCEEeCcCCc
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQ--GEILEVLGKLNSLKSLNISHNN 377 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~ 377 (502)
.....++|+.|++++|.+. +..+..|..+++|+.+++++|+
T Consensus 289 -------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 -------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -------------------cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0001456777777777776 5567778888888888888874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.5e-31 Score=254.47 Aligned_cols=249 Identities=27% Similarity=0.401 Sum_probs=155.3
Q ss_pred CCCcEEEccCCcccc--cCCcCCCCCCCCCEEeccC-CcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCee
Q 037195 24 TQLAYLDLSFNSFSG--HIPSSFSNLQQLRLLDLRY-NNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTF 100 (502)
Q Consensus 24 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 100 (502)
.+++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|.+|+++++|++|++++|.+++.+|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l----- 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI----- 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-----
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-----
Confidence 578889999988887 7888888899999999984 88888888888889999999999888888888887776
Q ss_pred ccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCC
Q 037195 101 AISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLS 180 (502)
Q Consensus 101 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 180 (502)
++|++|++++|.+++..+..+. .+++|++|++++|.+++.+|..+..++
T Consensus 125 -------------~~L~~L~Ls~N~l~~~~p~~~~------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 125 -------------KTLVTLDFSYNALSGTLPPSIS------------------SLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp -------------TTCCEEECCSSEEESCCCGGGG------------------GCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred -------------CCCCEEeCCCCccCCcCChHHh------------------cCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 6666666666655543221110 124455555555555555666666665
Q ss_pred -CCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCC
Q 037195 181 -YIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCR 259 (502)
Q Consensus 181 -~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 259 (502)
+|+.|++++|.+++..+..+.... |++|++++|.+++..|..+..++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~--------------------------------L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN--------------------------------LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC--------------------------------CSEEECCSSEEEECCGGGCCTTS
T ss_pred hcCcEEECcCCeeeccCChHHhCCc--------------------------------ccEEECcCCcccCcCCHHHhcCC
Confidence 666666666666554444443333 45555555555544444555555
Q ss_pred CCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHH
Q 037195 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMER 339 (502)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 339 (502)
+|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+ ..+++|++|++++|++++.+|.. .
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~----------~ 288 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG----------G 288 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS----------T
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCC----------c
Confidence 555555555555444333 4445555555555555554444433 33555555555555555554432 1
Q ss_pred HhcccCeeeccCCc
Q 037195 340 ILTTFATIDLSSNR 353 (502)
Q Consensus 340 ~~~~L~~L~Ls~n~ 353 (502)
.+++|+.+++++|.
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 26667777777776
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.3e-34 Score=288.67 Aligned_cols=365 Identities=19% Similarity=0.160 Sum_probs=217.1
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccc----cCCcCCCCCCCCCEEeccCCcCCccCCcccC-CCC---
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSG----HIPSSFSNLQQLRLLDLRYNNFVGKIPDIFT-NLT--- 72 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~--- 72 (502)
++.|||++|.+++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 46788888887654444434478888888888888764 3455677778888888888887654333332 344
Q ss_pred -CCCEEEcccCcCcc----cCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcC
Q 037195 73 -RLSYLGLGGNQLIG----SIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLL 147 (502)
Q Consensus 73 -~L~~L~L~~n~l~~----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 147 (502)
+|++|++++|.+.. .++..+..+ ++|++|++++|.+++.....+
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~------------------~~L~~L~Ls~n~i~~~~~~~l------------- 133 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTL------------------PTLQELHLSDNLLGDAGLQLL------------- 133 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSC------------------TTCCEEECCSSBCHHHHHHHH-------------
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccC------------------CceeEEECCCCcCchHHHHHH-------------
Confidence 68888888888763 335555544 677777777776654321000
Q ss_pred CccCCCCCCCccEEEccCCcCcccC----CccccCCCCCCEEECCCCcCccccccccc------cccccEEEccCCccCC
Q 037195 148 QGSLLNLPPHMREFSISRNNLTGEI----PSSFCNLSYIRFFDSSNNSLSGQILQCLG------NSTLDTLDLGMNNFQD 217 (502)
Q Consensus 148 ~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~n~~~~ 217 (502)
........++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ...|+.|++++|.++.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 0000011223445555555444322 33444556666666666666544333322 1236666666665543
Q ss_pred CCCCeeeccCccchhcCCCccEEeccCCccccCC-----CccccCCCCCcEEEccCCccCcc----CCcccCCCCCCCEE
Q 037195 218 MRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPL-----PPSLVNCRHLEVIDVGNNQINDT----FPHWLDVLPELQVL 288 (502)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 288 (502)
... ..++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 214 ~~~----~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 214 DNC----RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp THH----HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred HHH----HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 211 023445566677777777777765422 22223567777888887777653 45555667778888
Q ss_pred EccCCcCcccCCCCC---CCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC-
Q 037195 289 TLRSNRFRGPIDDTK---TRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK- 364 (502)
Q Consensus 289 ~l~~n~~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~- 364 (502)
++++|.+.+..+..+ .....++|++|++++|.+++.....+ ...+..+++|++|++++|.+++..+..+..
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-----~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-----SSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-----HHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH-----HHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 888777653221111 00123577888888887765422211 122344677888888888777655544432
Q ss_pred ----CCCCCEEeCcCCcCCC----CCchhccCCCCCCEEeCCCCCCCcc
Q 037195 365 ----LNSLKSLNISHNNLTG----GIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 365 ----l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
.++|+.|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 5678888888888775 5677777778888888888877653
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6e-32 Score=272.19 Aligned_cols=365 Identities=18% Similarity=0.130 Sum_probs=232.8
Q ss_pred CCEEEecCCCCcc----cCChhhhhCCCCCcEEEccCCcccccCCcCC-CCCC----CCCEEeccCCcCCc----cCCcc
Q 037195 1 MTLRNLSSSYFMG----SIPASLGNDITQLAYLDLSFNSFSGHIPSSF-SNLQ----QLRLLDLRYNNFVG----KIPDI 67 (502)
Q Consensus 1 l~~L~Ls~n~~~~----~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~----~L~~L~L~~n~~~~----~~~~~ 67 (502)
|++|+|++|.+++ .++..+. .+++|++|++++|.+....+..+ ..++ +|++|++++|++.. .++.+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 6899999999874 3566666 78999999999999876433332 2344 79999999999984 45888
Q ss_pred cCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC-------CCCCCCceE
Q 037195 68 FTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH-------LPWKNLEYL 140 (502)
Q Consensus 68 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L 140 (502)
+..+++|++|++++|.+.+..+..+..... . ..++|++|++++|.+++... ..+++|++|
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-----------~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLL-----------D--PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHT-----------S--TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHh-----------c--CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE
Confidence 999999999999999987555554443100 0 01578888888887776432 134566666
Q ss_pred eCcCCcCCccCCCC--------CCCccEEEccCCcCccc----CCccccCCCCCCEEECCCCcCccccccccccccccEE
Q 037195 141 HLDSNLLQGSLLNL--------PPHMREFSISRNNLTGE----IPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTL 208 (502)
Q Consensus 141 ~l~~n~l~~~~~~~--------~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 208 (502)
++++|.+.+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+
T Consensus 176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-------- 247 (461)
T 1z7x_W 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL-------- 247 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH--------
T ss_pred ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH--------
Confidence 66666654321111 23555555555555432 23334444555555555554433211110
Q ss_pred EccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccC----CCccccCCCCCcEEEccCCccCccCCcccC----
Q 037195 209 DLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGP----LPPSLVNCRHLEVIDVGNNQINDTFPHWLD---- 280 (502)
Q Consensus 209 ~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---- 280 (502)
.+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+.
T Consensus 248 ------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 248 ------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp ------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred ------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 011122456677777777777643 455566677888888888877554333332
Q ss_pred -CCCCCCEEEccCCcCcccC----CCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccc
Q 037195 281 -VLPELQVLTLRSNRFRGPI----DDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQ 355 (502)
Q Consensus 281 -~l~~L~~L~l~~n~~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 355 (502)
..++|++|++++|.+++.. +..+ ..+++|++|++++|.+.+..+..+.. .+....++|++|++++|.++
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~----~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVL--AQNRFLLELQISNNRLEDAGVRELCQ----GLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHH--HHCSSCCEEECCSSBCHHHHHHHHHH----HHTSTTCCCCEEECTTSCCC
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHH--hhCCCccEEEccCCccccccHHHHHH----HHcCCCCceEEEECCCCCCC
Confidence 2368888888888876542 1111 33578888888888776543332211 00011568999999999998
Q ss_pred c----cchhhhcCCCCCCEEeCcCCcCCCCCch----hcc-CCCCCCEEeCCCCCCCccCchhcc
Q 037195 356 G----EILEVLGKLNSLKSLNISHNNLTGGIPS----SLR-NLTELESLDLSSNKLAGRIPTQLA 411 (502)
Q Consensus 356 ~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~----~l~-~l~~L~~L~ls~n~l~~~~p~~~~ 411 (502)
+ .++..+..+++|++|++++|++++.-.. .+. ...+|+.|++.++.+....++.+.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~ 448 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence 6 6788888899999999999998753222 222 245789999988888765555443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.9e-29 Score=240.17 Aligned_cols=282 Identities=21% Similarity=0.249 Sum_probs=153.2
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.++...+.+.+++.++ .+|..+. ++|++|++++|++++..+.+|.++++|++|++++|.+++..|..+..+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------ 99 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL------ 99 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC------
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC------
Confidence 3555556677777666 4555443 367777777777765555567777777777777777664444555544
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCC
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSY 181 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 181 (502)
++|++|++++|.++++ .+..+..+++
T Consensus 100 ------------~~L~~L~Ls~n~l~~~------------------------------------------~~~~~~~l~~ 125 (353)
T 2z80_A 100 ------------GSLEHLDLSYNYLSNL------------------------------------------SSSWFKPLSS 125 (353)
T ss_dssp ------------TTCCEEECCSSCCSSC------------------------------------------CHHHHTTCTT
T ss_pred ------------CCCCEEECCCCcCCcC------------------------------------------CHhHhCCCcc
Confidence 4444444444433322 2222444444
Q ss_pred CCEEECCCCcCccccc-ccccccc-ccEEEccCCc-cCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCC
Q 037195 182 IRFFDSSNNSLSGQIL-QCLGNST-LDTLDLGMNN-FQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 258 (502)
Q Consensus 182 L~~L~l~~n~l~~~~~-~~~~~~~-L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 258 (502)
|++|++++|.+++... ..+.... |+.|++++|. ++ +..+..+..+++|++|++++|.+.+..|..+..+
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc--------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 4444444444432111 1111111 2222221110 00 0112233444455555555555555445555555
Q ss_pred CCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHH
Q 037195 259 RHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQME 338 (502)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 338 (502)
++|++|++++|.+.......+..+++|++|++++|.+++ ..+..+. ..
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--------------------------~~~~~l~------~~ 245 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT--------------------------FHFSELS------TG 245 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT--------------------------CCCC-----------
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc--------------------------ccccccc------cc
Confidence 555555555555433222223334455555555555443 3222110 01
Q ss_pred HHhcccCeeeccCCcccc----cchhhhcCCCCCCEEeCcCCcCCCCCchh-ccCCCCCCEEeCCCCCCCccCc
Q 037195 339 RILTTFATIDLSSNRFQG----EILEVLGKLNSLKSLNISHNNLTGGIPSS-LRNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 339 ~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~n~l~~~~p 407 (502)
...+.++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 224556666777776665 46778899999999999999999 56655 6899999999999999998766
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.1e-27 Score=224.28 Aligned_cols=248 Identities=22% Similarity=0.295 Sum_probs=192.2
Q ss_pred eEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccc--ccc-cccccccEEEccCCcc
Q 037195 139 YLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQI--LQC-LGNSTLDTLDLGMNNF 215 (502)
Q Consensus 139 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~-~~~~~L~~L~l~~n~~ 215 (502)
.++.+++.++......+++|++|++++|.++...+..+..+++|++|++++|.++... +.. .....|+.|++++|.+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 3444444444333333456677777777776444445677888888888888776432 222 2333488888877665
Q ss_pred CCCCCCeeeccCccchhcCCCccEEeccCCccccCCC-ccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCc
Q 037195 216 QDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNR 294 (502)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 294 (502)
+ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 91 ~---------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 91 I---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp E---------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred c---------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 4 245567778899999999999986655 578889999999999999988888889999999999999999
Q ss_pred Ccc-cCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeC
Q 037195 295 FRG-PIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNI 373 (502)
Q Consensus 295 ~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 373 (502)
+.+ ..+..+ ..+++|++|++++|++++..|..+ ..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 162 l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 162 FQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAF---------NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp EGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred cccccchhHH--hhCcCCCEEECCCCCcCCcCHHHh---------cCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 986 455555 668999999999999987766655 34789999999999999888878999999999999
Q ss_pred cCCcCCCCCchhccCCC-CCCEEeCCCCCCCccC
Q 037195 374 SHNNLTGGIPSSLRNLT-ELESLDLSSNKLAGRI 406 (502)
Q Consensus 374 ~~N~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~~ 406 (502)
++|++++..|..+..++ +|++|++++|++.+..
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999999999998885 9999999999998653
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.1e-27 Score=225.48 Aligned_cols=283 Identities=20% Similarity=0.222 Sum_probs=173.3
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCcc--CCcccCCCCCCCEEEcc
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGK--IPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~ 80 (502)
.++.+++.++ .+|..++ ++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4555555553 4554433 4566666666666533333355666666666666665521 24445556666666666
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccE
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMRE 160 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 160 (502)
+|.+. .+|..+..+ ++|++|++++|.+++.... .....+++|++
T Consensus 87 ~n~i~-~l~~~~~~l------------------~~L~~L~l~~n~l~~~~~~-----------------~~~~~l~~L~~ 130 (306)
T 2z66_A 87 FNGVI-TMSSNFLGL------------------EQLEHLDFQHSNLKQMSEF-----------------SVFLSLRNLIY 130 (306)
T ss_dssp SCSEE-EEEEEEETC------------------TTCCEEECTTSEEESSTTT-----------------TTTTTCTTCCE
T ss_pred CCccc-cChhhcCCC------------------CCCCEEECCCCcccccccc-----------------hhhhhccCCCE
Confidence 66555 344444433 4455555555444433220 00111345556
Q ss_pred EEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEE
Q 037195 161 FSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSL 240 (502)
Q Consensus 161 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L 240 (502)
|++++|.+.+..+..+..+++|++|++++|.+++. .+|..+..+++|++|
T Consensus 131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN------------------------------FLPDIFTELRNLTFL 180 (306)
T ss_dssp EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG------------------------------EECSCCTTCTTCCEE
T ss_pred EECCCCcCCccchhhcccCcCCCEEECCCCccccc------------------------------cchhHHhhCcCCCEE
Confidence 66666666555555566666666666666655421 234556667788888
Q ss_pred eccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCC-CCccEEEccCc
Q 037195 241 NLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPF-PKLRIIDLSYN 319 (502)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l-~~L~~L~L~~n 319 (502)
++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+ ++|++|++++|
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQN 258 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTTC
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccCC
Confidence 888888887778888888899999999998887777778888899999999999888777665 445 48888888888
Q ss_pred cCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC
Q 037195 320 RFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK 364 (502)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 364 (502)
.+.+..+... +...+...+.+.+..+.+....|..+.+
T Consensus 259 ~~~~~c~~~~-------~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 259 DFACTCEHQS-------FLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CEECSGGGHH-------HHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CeecccChHH-------HHHHHHhhhhhhccccccccCCchhhCC
Confidence 8876544221 1223445555566666666666666554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=229.71 Aligned_cols=268 Identities=21% Similarity=0.175 Sum_probs=189.6
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
+.+++++.++ .+|..++ ++|++|++++|.+++..+..|.++++|++|++++|++++..+.+|+++++|++|++++|
T Consensus 35 ~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 5678888886 7888766 58999999999999777768999999999999999999888889999999999999999
Q ss_pred cCcccCChh-hhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC----CCCCCCceEeCcCCc-CCccCCC---
Q 037195 83 QLIGSIPSS-IFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH----LPWKNLEYLHLDSNL-LQGSLLN--- 153 (502)
Q Consensus 83 ~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~-l~~~~~~--- 153 (502)
+++ .+|.. +..+ ++|++|++++|.++.++. ..+++|++|++++|. +.+..+.
T Consensus 111 ~l~-~~~~~~~~~l------------------~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 111 YLS-NLSSSWFKPL------------------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CCS-SCCHHHHTTC------------------TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred cCC-cCCHhHhCCC------------------ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 998 55554 6665 899999999999887765 245666666666663 3332221
Q ss_pred CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhc
Q 037195 154 LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAK 233 (502)
Q Consensus 154 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 233 (502)
.+++|++|++++|.+++..+..+..+++|++|++++|.+...... .+..
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------------------------~~~~ 220 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI-------------------------------FVDV 220 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH-------------------------------HHHH
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh-------------------------------hhhh
Confidence 145555555555555555555555555555555555554322221 1223
Q ss_pred CCCccEEeccCCccccCCCccc---cCCCCCcEEEccCCccCc----cCCcccCCCCCCCEEEccCCcCcccCCCCCCCC
Q 037195 234 SCVLVSLNLNGNRLEGPLPPSL---VNCRHLEVIDVGNNQIND----TFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRV 306 (502)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 306 (502)
+++|+.|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|+++......+ .
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~--~ 298 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF--D 298 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT--T
T ss_pred cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH--h
Confidence 4556666666666654433322 235667778888777765 356677888889999999998885544434 5
Q ss_pred CCCCccEEEccCccCCCCCc
Q 037195 307 PFPKLRIIDLSYNRFTGVLP 326 (502)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~~ 326 (502)
.+++|++|++++|++.+..|
T Consensus 299 ~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 299 RLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCCCCEEEeeCCCccCcCC
Confidence 68899999999999888766
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.9e-26 Score=233.90 Aligned_cols=269 Identities=26% Similarity=0.315 Sum_probs=175.2
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccc
Q 037195 24 TQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAIS 103 (502)
Q Consensus 24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~ 103 (502)
.+++.|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|+|++|+++ .+|. .+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l-------- 100 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LP-------- 100 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CC--------
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CC--------
Confidence 35788888888887 6666654 68888888888887 4554 5678888888888876 5554 22
Q ss_pred cchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCC
Q 037195 104 VAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIR 183 (502)
Q Consensus 104 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 183 (502)
++|++|++++|.++.++. .+.+|+.|+++ +|.++. +|.. +++|+
T Consensus 101 ----------~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~---------------------~N~l~~-lp~~---l~~L~ 144 (622)
T 3g06_A 101 ----------PGLLELSIFSNPLTHLPA-LPSGLCKLWIF---------------------GNQLTS-LPVL---PPGLQ 144 (622)
T ss_dssp ----------TTCCEEEECSCCCCCCCC-CCTTCCEEECC---------------------SSCCSC-CCCC---CTTCC
T ss_pred ----------CCCCEEECcCCcCCCCCC-CCCCcCEEECC---------------------CCCCCc-CCCC---CCCCC
Confidence 677777777776666544 33444444444 444442 2221 24566
Q ss_pred EEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcE
Q 037195 184 FFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEV 263 (502)
Q Consensus 184 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 263 (502)
+|++++|.+++... .+.+|+.|++++|.+++ +| ..+++|+.
T Consensus 145 ~L~Ls~N~l~~l~~-----------------------------------~~~~L~~L~L~~N~l~~-l~---~~~~~L~~ 185 (622)
T 3g06_A 145 ELSVSDNQLASLPA-----------------------------------LPSELCKLWAYNNQLTS-LP---MLPSGLQE 185 (622)
T ss_dssp EEECCSSCCSCCCC-----------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred EEECcCCcCCCcCC-----------------------------------ccCCCCEEECCCCCCCC-Cc---ccCCCCcE
Confidence 66666655543110 01235555555555553 22 23455666
Q ss_pred EEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcc
Q 037195 264 IDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTT 343 (502)
Q Consensus 264 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 343 (502)
|++++|.+.+. |. .+++|+.|++++|.++.... .+++|+.|++++|++++ +|. .+++
T Consensus 186 L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N~L~~-lp~------------~l~~ 242 (622)
T 3g06_A 186 LSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTS-LPV------------LPSE 242 (622)
T ss_dssp EECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSC-CCC------------CCTT
T ss_pred EECCCCCCCCC-CC---ccchhhEEECcCCcccccCC------CCCCCCEEEccCCccCc-CCC------------CCCc
Confidence 66666666542 22 13566677777776654321 13567777777777765 331 1577
Q ss_pred cCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCC
Q 037195 344 FATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN 414 (502)
Q Consensus 344 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 414 (502)
|+.|++++|+++. +|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8888888888874 444 5688999999999998 7888899999999999999999998888877665
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.5e-27 Score=220.73 Aligned_cols=77 Identities=22% Similarity=0.197 Sum_probs=42.3
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
+++.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4455555543 4444332 45566666666655444445555666666666666555555555555566666666555
Q ss_pred c
Q 037195 83 Q 83 (502)
Q Consensus 83 ~ 83 (502)
.
T Consensus 91 ~ 91 (285)
T 1ozn_A 91 A 91 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.6e-27 Score=223.22 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=73.5
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
..++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..++.+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l------ 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL------ 149 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGC------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcC------
Confidence 4578999999999998 77888888999999999999998 88888999999999999999988 888888776
Q ss_pred cccchhhhhhccCcccEEECCCCcCccc
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
++|++|++++|++.+.
T Consensus 150 ------------~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 150 ------------NRLRELSIRACPELTE 165 (328)
T ss_dssp ------------TTCCEEEEEEETTCCC
T ss_pred ------------cCCCEEECCCCCCccc
Confidence 7777777777655443
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-26 Score=221.66 Aligned_cols=236 Identities=19% Similarity=0.208 Sum_probs=166.3
Q ss_pred CCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCc
Q 037195 46 NLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNF 125 (502)
Q Consensus 46 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~ 125 (502)
..+++++|++++|.+. .+|..+.++++|++|+|++|.++ .+|..++.+ ++|++|++++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l------------------~~L~~L~Ls~n- 137 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF------------------AGLETLTLARN- 137 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG------------------TTCSEEEEESC-
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc------------------CCCCEEECCCC-
Confidence 4578999999999998 78888999999999999999998 888888776 44444444444
Q ss_pred CcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccc
Q 037195 126 LTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTL 205 (502)
Q Consensus 126 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 205 (502)
.++ .+|..+..+++|++|++++|.+.+.++..+..
T Consensus 138 -----------------------------------------~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--- 172 (328)
T 4fcg_A 138 -----------------------------------------PLR-ALPASIASLNRLRELSIRACPELTELPEPLAS--- 172 (328)
T ss_dssp -----------------------------------------CCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE---
T ss_pred -----------------------------------------ccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh---
Confidence 333 44566677777777777777666555443221
Q ss_pred cEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCC
Q 037195 206 DTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPEL 285 (502)
Q Consensus 206 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 285 (502)
. .++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus 173 --~-----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 173 --T-----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp --E-----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred --c-----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 0 11233556778899999999888 777788889999999999999875 45568889999
Q ss_pred CEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCC
Q 037195 286 QVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKL 365 (502)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 365 (502)
++|++++|.+.+.++..+ ..+++|++|++++|++.+ .+|..++.+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~---------------------------------~~p~~~~~l 276 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLL---------------------------------TLPLDIHRL 276 (328)
T ss_dssp CEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCC---------------------------------BCCTTGGGC
T ss_pred CEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchh---------------------------------hcchhhhcC
Confidence 999999999888777665 445555555555555544 444445555
Q ss_pred CCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCC
Q 037195 366 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 366 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~ 403 (502)
++|+.|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666666666655566666666666666666555443
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.9e-26 Score=232.79 Aligned_cols=133 Identities=24% Similarity=0.276 Sum_probs=102.3
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+++|++++|.++ .+|..++ ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 578999999997 8888775 79999999999998 5665 6799999999999998 4665 78999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccE
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMRE 160 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 160 (502)
+|.++ .+|. .+ ++|++|++++|.++.++.. +++|++|++++|.+++. +..+++|+.
T Consensus 110 ~N~l~-~l~~---~l------------------~~L~~L~L~~N~l~~lp~~-l~~L~~L~Ls~N~l~~l-~~~~~~L~~ 165 (622)
T 3g06_A 110 SNPLT-HLPA---LP------------------SGLCKLWIFGNQLTSLPVL-PPGLQELSVSDNQLASL-PALPSELCK 165 (622)
T ss_dssp SCCCC-CCCC---CC------------------TTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCC-CCCCTTCCE
T ss_pred CCcCC-CCCC---CC------------------CCcCEEECCCCCCCcCCCC-CCCCCEEECcCCcCCCc-CCccCCCCE
Confidence 99998 5665 22 8899999999999886653 46777777777766542 223344555
Q ss_pred EEccCCcCc
Q 037195 161 FSISRNNLT 169 (502)
Q Consensus 161 L~l~~n~l~ 169 (502)
|++++|.++
T Consensus 166 L~L~~N~l~ 174 (622)
T 3g06_A 166 LWAYNNQLT 174 (622)
T ss_dssp EECCSSCCS
T ss_pred EECCCCCCC
Confidence 555554444
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.2e-26 Score=227.26 Aligned_cols=247 Identities=24% Similarity=0.225 Sum_probs=141.5
Q ss_pred CcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccc
Q 037195 26 LAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVA 105 (502)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~ 105 (502)
.+.++.++..++ .+|..+. +++++|+|++|++.+..+.+|.++++|++|+|++|.+.+..|..+..+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l---------- 122 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL---------- 122 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc----------
Confidence 345555555555 4444332 456666666666665555566666666666666666654444455444
Q ss_pred hhhhhhccCcccEEECCCCcCcccCCC---CCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCC
Q 037195 106 AWMWDIGVHTLIYLELSRNFLTNIDHL---PWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYI 182 (502)
Q Consensus 106 ~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 182 (502)
++|++|++++|.++.++.. .+++|++|++++|.+ +...+..+..+++|
T Consensus 123 --------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l---------------------~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 123 --------ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI---------------------ESIPSYAFNRVPSL 173 (452)
T ss_dssp --------TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC---------------------CEECTTTTTTCTTC
T ss_pred --------ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc---------------------ceeCHhHHhcCCcc
Confidence 5566666666655554432 223333333333333 32223334444444
Q ss_pred CEEECCCCc-Ccccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCC
Q 037195 183 RFFDSSNNS-LSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 260 (502)
Q Consensus 183 ~~L~l~~n~-l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (502)
+.|++++|. +.......+.... |+.|++++|.++.+. .+..+++|+.|++++|.+++..|..+..+++
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 243 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----------CCTTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----------cccccccccEEECcCCcCcccCcccccCccC
Confidence 444444422 2111111222222 444444444333221 2445667888888888887777777888888
Q ss_pred CcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCc
Q 037195 261 LEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLP 326 (502)
Q Consensus 261 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 326 (502)
|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+.....
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF--TPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS--TTCTTCCEEECCSSCEECSTT
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh--ccccCCCEEEccCCCcCCCCC
Confidence 8888888888877777778888888888888888876665555 557788888888887765433
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7e-26 Score=226.08 Aligned_cols=246 Identities=24% Similarity=0.235 Sum_probs=150.2
Q ss_pred CcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccc
Q 037195 26 LAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVA 105 (502)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~ 105 (502)
.+.++.++..++ .+|..+. +++++|+|++|++.+..+.+|.++++|++|+|++|.+.+..+..+..+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l---------- 111 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL---------- 111 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC----------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC----------
Confidence 456666666665 5555443 466677777777666666666777777777777776664444555544
Q ss_pred hhhhhhccCcccEEECCCCcCcccCCC---CCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCC
Q 037195 106 AWMWDIGVHTLIYLELSRNFLTNIDHL---PWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYI 182 (502)
Q Consensus 106 ~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 182 (502)
++|++|++++|.++.++.. .+++|++|++++|. ++...+..+..+++|
T Consensus 112 --------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---------------------i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 112 --------ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP---------------------IESIPSYAFNRIPSL 162 (440)
T ss_dssp --------SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC---------------------CCEECTTTTTTCTTC
T ss_pred --------ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc---------------------ccccCHHHhhhCccc
Confidence 6667777777666655442 23334444444333 333333344444445
Q ss_pred CEEECCCCc-Ccccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCC
Q 037195 183 RFFDSSNNS-LSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 260 (502)
Q Consensus 183 ~~L~l~~n~-l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (502)
+.|++++|. +.......+.... |+.|++++|.++.+ | .+..+++|+.|++++|.+++..|..+..+++
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---------P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---------C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---------c-ccCCCcccCEEECCCCccCccChhhhccCcc
Confidence 555554422 2211222222222 44444444444322 1 2445667888888888888777777888888
Q ss_pred CcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCC
Q 037195 261 LEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVL 325 (502)
Q Consensus 261 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 325 (502)
|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+....
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF--TPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT--SSCTTCCEEECCSSCEECSS
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh--ccccCCCEEEcCCCCccCCC
Confidence 8888888888887777778888888888888888877666555 55778888888888776443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1e-25 Score=225.76 Aligned_cols=247 Identities=19% Similarity=0.192 Sum_probs=198.7
Q ss_pred ceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccC
Q 037195 138 EYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQ 216 (502)
Q Consensus 138 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~ 216 (502)
..++.++..++......+++++.|++++|.+++..+..|..+++|+.|++++|.+++..+..+.... |+.|++++|.++
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 4455555555544333456777777777777777777788888888888888888777766666555 888888777665
Q ss_pred CCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCC-ccCccCCcccCCCCCCCEEEccCCcC
Q 037195 217 DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN-QINDTFPHWLDVLPELQVLTLRSNRF 295 (502)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 295 (502)
.+ .+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..|..+++|++|++++|.+
T Consensus 137 ~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 137 VI--------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp BC--------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cc--------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 33 2345677889999999999999777778999999999999984 55555556788999999999999999
Q ss_pred cccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcC
Q 037195 296 RGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISH 375 (502)
Q Consensus 296 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 375 (502)
++... + ..+++|+.|++++|.+++..|..+ ..+++|+.|++++|++++..+..|..+++|+.|+|++
T Consensus 209 ~~~~~--~--~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 209 KDMPN--L--TPLVGLEELEMSGNHFPEIRPGSF---------HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp SSCCC--C--TTCTTCCEEECTTSCCSEECGGGG---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccc--c--cccccccEEECcCCcCcccCcccc---------cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 86532 2 568999999999999998877665 3489999999999999999999999999999999999
Q ss_pred CcCCCCCchhccCCCCCCEEeCCCCCCCcc
Q 037195 376 NNLTGGIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 376 N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
|++++..+..+..+++|+.|++++|++...
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 999977778889999999999999998754
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.2e-25 Score=211.13 Aligned_cols=227 Identities=21% Similarity=0.209 Sum_probs=152.7
Q ss_pred eEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCC
Q 037195 139 YLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDM 218 (502)
Q Consensus 139 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 218 (502)
+++.+++.++......+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------- 73 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------------------- 73 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---------------------
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH---------------------
Confidence 34444444443333334566666666666665555666777777777777776654332
Q ss_pred CCCeeeccCccchhcCCCccEEeccCCc-cccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcc
Q 037195 219 RMNKFSGSLPQTFAKSCVLVSLNLNGNR-LEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRG 297 (502)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 297 (502)
..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 74 ----------~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 74 ----------AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp ----------TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 334455566666666665 555555666667777777777777766666666777777777777777765
Q ss_pred cCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCc
Q 037195 298 PIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNN 377 (502)
Q Consensus 298 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 377 (502)
..+..+ ..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 144 ~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 144 LPDDTF--RDLGNLTHLFLHGNRISSVPERAF---------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCTTTT--TTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCHhHh--ccCCCccEEECCCCcccccCHHHh---------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 554444 456777777777777765444333 236788888888888887778888888888888888888
Q ss_pred CCCCCchhccCCCCCCEEeCCCCCCCccCc
Q 037195 378 LTGGIPSSLRNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 378 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 407 (502)
+++..+..+..+++|++|++++|++.+..+
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 887666778888888888888888876544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=223.35 Aligned_cols=247 Identities=21% Similarity=0.208 Sum_probs=196.1
Q ss_pred ceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccC
Q 037195 138 EYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQ 216 (502)
Q Consensus 138 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~ 216 (502)
..++..+..++.......++++.|++++|.++...+..|.++++|++|++++|.+++..+..+.... |+.|++++|.++
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 3455555555544444456677777777777766667777788888888888887776666666555 888888777666
Q ss_pred CCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCC-ccCccCCcccCCCCCCCEEEccCCcC
Q 037195 217 DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN-QINDTFPHWLDVLPELQVLTLRSNRF 295 (502)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 295 (502)
.+. +..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..|.++++|++|++++|.+
T Consensus 126 ~~~--------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 126 TIP--------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SCC--------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred eeC--------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 432 345677888999999999998777778999999999999985 55555566788999999999999999
Q ss_pred cccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcC
Q 037195 296 RGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISH 375 (502)
Q Consensus 296 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 375 (502)
+.... ...+++|+.|++++|++++..|..+ ..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 198 ~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 198 REIPN----LTPLIKLDELDLSGNHLSAIRPGSF---------QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SSCCC----CTTCSSCCEEECTTSCCCEECTTTT---------TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccccc----cCCCcccCEEECCCCccCccChhhh---------ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 85532 2568899999999999998777655 3489999999999999999999999999999999999
Q ss_pred CcCCCCCchhccCCCCCCEEeCCCCCCCcc
Q 037195 376 NNLTGGIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 376 N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
|++++..+..|..+++|+.|++++|++...
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 999977778889999999999999998653
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-27 Score=225.77 Aligned_cols=220 Identities=21% Similarity=0.186 Sum_probs=115.9
Q ss_pred CCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCC
Q 037195 45 SNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRN 124 (502)
Q Consensus 45 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n 124 (502)
..+++|++|++++|++.+..|.+|..+++|++|++++|.+++..+ +..+ ++|++|++++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l------------------~~L~~L~Ls~n 90 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL------------------STLRTLDLNNN 90 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC------------------TTCCEEECCSS
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc------------------CCCCEEECcCC
Confidence 334444444444444444334444444444444444444442221 2222 44444444444
Q ss_pred cCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc
Q 037195 125 FLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST 204 (502)
Q Consensus 125 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (502)
.+++++. .++|++|++++|.+++..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 91 ~l~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---- 164 (317)
T 3o53_A 91 YVQELLV--GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---- 164 (317)
T ss_dssp EEEEEEE--CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG----
T ss_pred ccccccC--CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH----
Confidence 4443332 1345555555555544443344556666666666665555566666667777776666654332221
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPE 284 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 284 (502)
...+++|++|++++|.+++. + ....+++|++|++++|.+.+..+ .+..+++
T Consensus 165 --------------------------~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~ 215 (317)
T 3o53_A 165 --------------------------AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (317)
T ss_dssp --------------------------GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred --------------------------hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCc
Confidence 12345566666666666543 2 22346777777777777765433 3666777
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCC
Q 037195 285 LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFT 322 (502)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 322 (502)
|++|++++|.+++. +..+ ..+++|+.|++++|.+.
T Consensus 216 L~~L~L~~N~l~~l-~~~~--~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 216 VTWISLRNNKLVLI-EKAL--RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSEEECTTSCCCEE-CTTC--CCCTTCCEEECTTCCCB
T ss_pred ccEEECcCCcccch-hhHh--hcCCCCCEEEccCCCcc
Confidence 77777777777643 3333 34556666666666554
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.7e-28 Score=254.98 Aligned_cols=365 Identities=15% Similarity=0.103 Sum_probs=199.3
Q ss_pred CCCCCcEEEccCCcccccCCcCCCC-CC-CCCEEeccCCc-CCc-cCCcccCCCCCCCEEEcccCcCcccC----Chhhh
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSN-LQ-QLRLLDLRYNN-FVG-KIPDIFTNLTRLSYLGLGGNQLIGSI----PSSIF 93 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~ 93 (502)
.+++|++|+|++|.+++..+..+.. ++ +|++|++++|. +.. .++....++++|++|+|++|.+.+.- +..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5677777777777666544444444 23 37777777665 111 12222346677777777777655332 22222
Q ss_pred cccCCeec------------cccchhhhhhccCcccEEECCCCcCcccCC--CCCCCCceEeCcCCcCC---cc---CCC
Q 037195 94 ELLNLTFA------------ISVAAWMWDIGVHTLIYLELSRNFLTNIDH--LPWKNLEYLHLDSNLLQ---GS---LLN 153 (502)
Q Consensus 94 ~l~~L~~~------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~---~~---~~~ 153 (502)
.+++|+.. ..++..+..+ ++|++|++++|.+.+.+. ..+++|++|+++..... +. ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 23222110 0111111122 555555555555444332 23455555555432111 00 111
Q ss_pred CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccc-ccccccc-ccEEEccCCccCCCCCCeeeccCccch
Q 037195 154 LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQIL-QCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTF 231 (502)
Q Consensus 154 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~ 231 (502)
.+++|+.+.+.++.. ..++..+..+++|++|++++|.+++... ..+.... |+.|+++ +.+. .+.++...
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~-------~~~l~~~~ 338 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG-------DRGLEVLA 338 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH-------HHHHHHHH
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccC-------HHHHHHHH
Confidence 245666666655422 2445555666677777777776554332 2233333 7777775 2221 11233344
Q ss_pred hcCCCccEEeccC-----------CccccC-CCccccCCCCCcEEEccCCccCccCCcccCC-CCCCCEEEcc----CCc
Q 037195 232 AKSCVLVSLNLNG-----------NRLEGP-LPPSLVNCRHLEVIDVGNNQINDTFPHWLDV-LPELQVLTLR----SNR 294 (502)
Q Consensus 232 ~~l~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~ 294 (502)
..+++|++|++++ +.++.. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 5667788888873 344422 1222345778888888777777665555554 7788888886 445
Q ss_pred CcccCCCC---CCCCCCCCccEEEccCcc--CCCCCchhhhcCCchhHHHHhcccCeeeccCCccccc-chhhhcCCCCC
Q 037195 295 FRGPIDDT---KTRVPFPKLRIIDLSYNR--FTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGE-ILEVLGKLNSL 368 (502)
Q Consensus 295 ~~~~~~~~---~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 368 (502)
+++.+... .....+++|+.|++++|. +++..+..+ ...+++|++|++++|++++. ++..+..+++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH--------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH--------HHhCccceEeeccCCCCCHHHHHHHHhcCccc
Confidence 54321100 001336788888887543 443322211 13377888888888888763 44555778888
Q ss_pred CEEeCcCCcCCCC-CchhccCCCCCCEEeCCCCCCCcc
Q 037195 369 KSLNISHNNLTGG-IPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 369 ~~L~L~~N~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
+.|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 8888888887644 344455688888888888887754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-27 Score=226.36 Aligned_cols=253 Identities=17% Similarity=0.174 Sum_probs=188.2
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
+.+++.+.+. .++..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 3445555553 3344555577899999999999997777889999999999999999986554 999999999999999
Q ss_pred cCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCC---CCCcc
Q 037195 83 QLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNL---PPHMR 159 (502)
Q Consensus 83 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~ 159 (502)
.++ .++ .. ++|++|++++|.+++.....+++|++|++++|.+++..+.. +++|+
T Consensus 91 ~l~-~l~----~~------------------~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 91 YVQ-ELL----VG------------------PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp EEE-EEE----EC------------------TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred ccc-ccc----CC------------------CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 987 333 22 89999999999999998888999999999999998765433 78999
Q ss_pred EEEccCCcCcccCCccc-cCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCcc
Q 037195 160 EFSISRNNLTGEIPSSF-CNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLV 238 (502)
Q Consensus 160 ~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~ 238 (502)
+|++++|.+++..+..+ ..+++|++|++++|.+++... ......|+.|++++|.++. +|..+..+++|+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~ 217 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF---------MGPEFQSAAGVT 217 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE---------ECGGGGGGTTCS
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc---------chhhhcccCccc
Confidence 99999999998777766 478999999999999876532 2223336667776665542 233455566666
Q ss_pred EEeccCCccccCCCccccCCCCCcEEEccCCccC-ccCCcccCCCCCCCEEEccC
Q 037195 239 SLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN-DTFPHWLDVLPELQVLTLRS 292 (502)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~ 292 (502)
+|++++|.++ .+|..+..+++|+.|++++|.+. +..+.++..++.|+.+++.+
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 6666666666 34555666666666666666665 45555566666666666653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-27 Score=226.11 Aligned_cols=208 Identities=20% Similarity=0.197 Sum_probs=119.0
Q ss_pred CccEEEccCCcCcccCCccc--cCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcC
Q 037195 157 HMREFSISRNNLTGEIPSSF--CNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKS 234 (502)
Q Consensus 157 ~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l 234 (502)
+|++|++++|.+++..|..+ ..+++|++|++++|.+++. +..+... +. ..+
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l------------------------~~--~~~ 148 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL------------------------QQ--WLK 148 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH------------------------HT--TCC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH------------------------HH--hhc
Confidence 44555555555555555544 6667777777777766654 2222111 00 001
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCcc--CCccc--CCCCCCCEEEccCCcCcccCCCC-CCCCCCC
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDT--FPHWL--DVLPELQVLTLRSNRFRGPIDDT-KTRVPFP 309 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~ 309 (502)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++..... .....++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4566666666666555555566666666666666665432 12222 55666666666666665221100 0002345
Q ss_pred CccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCC
Q 037195 310 KLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 389 (502)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 389 (502)
+|++|++++|++.+..|.... ..+++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~--------~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l 295 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSC--------DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL 295 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCC--------CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred CCCEEECCCCcCCcccchhhh--------hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence 666666666666655432211 12567777777777777 5555554 7788888888888754 55 7788
Q ss_pred CCCCEEeCCCCCCCc
Q 037195 390 TELESLDLSSNKLAG 404 (502)
Q Consensus 390 ~~L~~L~ls~n~l~~ 404 (502)
++|++|++++|++++
T Consensus 296 ~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEEEEECTTCTTTC
T ss_pred CCCCEEeccCCCCCC
Confidence 888888888888874
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.7e-25 Score=212.68 Aligned_cols=136 Identities=19% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCC-ccCCcccC-------CCCCCCEEEcccCcCcccCChhh--
Q 037195 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFV-GKIPDIFT-------NLTRLSYLGLGGNQLIGSIPSSI-- 92 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~~-- 92 (502)
.++|+.|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 344433332 555555555552 23444333 45566666666665555555544
Q ss_pred hcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccC
Q 037195 93 FELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEI 172 (502)
Q Consensus 93 ~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 172 (502)
..+ ++|++|++++|.+++.+. .+..+ ....+++|++|++++|.+++..
T Consensus 118 ~~l------------------~~L~~L~Ls~N~l~~~~~-~~~~l-------------~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 118 ATG------------------PDLNILNLRNVSWATRDA-WLAEL-------------QQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp CCS------------------CCCSEEEEESCBCSSSSS-HHHHH-------------HTTCCTTCCEEEEESCSCCCCC
T ss_pred hcC------------------CCccEEEccCCCCcchhH-HHHHH-------------HHhhcCCCcEEEeeCCCCccch
Confidence 222 444444444444443311 00000 0000245666666666666666
Q ss_pred CccccCCCCCCEEECCCCcCcc
Q 037195 173 PSSFCNLSYIRFFDSSNNSLSG 194 (502)
Q Consensus 173 ~~~l~~l~~L~~L~l~~n~l~~ 194 (502)
+..+..+++|++|++++|++.+
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCH
T ss_pred HHHhccCCCCCEEECCCCCcCc
Confidence 6677777778888888777654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-25 Score=225.38 Aligned_cols=216 Identities=20% Similarity=0.177 Sum_probs=124.4
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 25 QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
+|++|+|++|.+++..|..|..+++|++|+|++|.+.+..| ++.+++|++|+|++|.+++ +| ..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~--------- 98 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VG--------- 98 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----EC---------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CC---------
Confidence 56666666666665555566666666666666666654433 5666666666666665552 21 11
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCE
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRF 184 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 184 (502)
++|++|++++|.+++ ..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 99 ---------~~L~~L~L~~N~l~~---------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 99 ---------PSIETLHAANNNISR---------------------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp ---------TTCCEEECCSSCCCC---------------------EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred ---------CCcCEEECcCCcCCC---------------------CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 444444444444444 33333455666666666666666666666777777
Q ss_pred EECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEE
Q 037195 185 FDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVI 264 (502)
Q Consensus 185 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (502)
|++++|.+++..+..+. ..++.|+.|++++|.+++.. ....+++|+.|
T Consensus 149 L~Ls~N~l~~~~~~~l~------------------------------~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L 196 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELA------------------------------ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTL 196 (487)
T ss_dssp EECTTSCCCEEEGGGGG------------------------------GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEE
T ss_pred EECCCCCCCCcChHHHh------------------------------hhCCcccEEecCCCcccccc--ccccCCCCCEE
Confidence 77777766654433321 13445555666666555432 12346666677
Q ss_pred EccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCC
Q 037195 265 DVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFT 322 (502)
Q Consensus 265 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 322 (502)
++++|.+++..+. +..+++|+.|++++|.+++.+ ..+ ..+++|+.|++++|.+.
T Consensus 197 ~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KAL--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTC--CCCTTCCEEECTTCCBC
T ss_pred ECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hhh--ccCCCCCEEEcCCCCCc
Confidence 7777666554333 666667777777777766532 223 44667777777777766
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-25 Score=222.69 Aligned_cols=229 Identities=21% Similarity=0.201 Sum_probs=166.6
Q ss_pred CCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcC
Q 037195 156 PHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKS 234 (502)
Q Consensus 156 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l 234 (502)
++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+ +.... |+.|++++|.++.+. ..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------------~~ 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------------VG 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------------EC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------------CC
Confidence 456666666666666666667777777777777777766554 33333 777777666554221 12
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 314 (502)
++|+.|++++|.+++..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+. ..+++|+.|
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L 174 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHL 174 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEE
Confidence 5688888888887765443 356788888888888877777777888888888888888876655441 246788888
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCE
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELES 394 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 394 (502)
++++|.+++..+.. .+++|+.|+|++|.+++.++ .+..+++|+.|+|++|.++ .+|..+..+++|+.
T Consensus 175 ~Ls~N~l~~~~~~~-----------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 175 NLQYNFIYDVKGQV-----------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (487)
T ss_dssp ECTTSCCCEEECCC-----------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred ecCCCccccccccc-----------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCE
Confidence 88888887653322 27889999999999987555 4888999999999999998 57888889999999
Q ss_pred EeCCCCCCC-ccCchhcccCCCC
Q 037195 395 LDLSSNKLA-GRIPTQLASLNYL 416 (502)
Q Consensus 395 L~ls~n~l~-~~~p~~~~~l~~L 416 (502)
|++++|++. +.+|..+..++.+
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCC
Confidence 999999998 6667777665544
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.4e-26 Score=240.56 Aligned_cols=388 Identities=12% Similarity=0.031 Sum_probs=250.0
Q ss_pred CCEEEecCCCCcccCChhhhhCCCC-CcEEEccCCc-ccc-cCCcCCCCCCCCCEEeccCCcCCcc----CCcccCCCCC
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQ-LAYLDLSFNS-FSG-HIPSSFSNLQQLRLLDLRYNNFVGK----IPDIFTNLTR 73 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~-L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~ 73 (502)
|++|+|++|.+++..+..+...++. |++|++++|. ++. .++.....+++|++|+|++|.+.+. ++..+..+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 5788888887776666666532444 8888888775 221 1222234677888888888876544 2334456778
Q ss_pred CCEEEcccCcCc----ccCChhhhcccCCee-------ccccchhhhhhccCcccEEECCCCcCccc------CCCCCCC
Q 037195 74 LSYLGLGGNQLI----GSIPSSIFELLNLTF-------AISVAAWMWDIGVHTLIYLELSRNFLTNI------DHLPWKN 136 (502)
Q Consensus 74 L~~L~L~~n~l~----~~~p~~~~~l~~L~~-------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~ 136 (502)
|++|++++|.++ +.++..+..+++|+. ...+|..+..+ ++|++|+++....... ....+++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA--ANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC--TTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh--hHHHhhcccccccccchHHHHHHhhcccc
Confidence 888888777775 234444455566655 23355555655 9999999986322211 1135679
Q ss_pred CceEeCcCCcCCccC--CCCCCCccEEEccCCcCcccCC-ccccCCCCCCEEECCCCcCccc-ccccccccc-ccEEEcc
Q 037195 137 LEYLHLDSNLLQGSL--LNLPPHMREFSISRNNLTGEIP-SSFCNLSYIRFFDSSNNSLSGQ-ILQCLGNST-LDTLDLG 211 (502)
Q Consensus 137 L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~-L~~L~l~ 211 (502)
|+.++++.+...... ...+++|++|++++|.+++... ..+..+++|+.|+++ +.+... ++......+ |+.|+++
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 999998875332211 2237899999999999775443 346789999999999 444433 233333334 9999997
Q ss_pred C---CccCCCCCCeeecc-CccchhcCCCccEEeccCCccccCCCccccC-CCCCcEEEcc----CCccCcc-----CCc
Q 037195 212 M---NNFQDMRMNKFSGS-LPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVG----NNQINDT-----FPH 277 (502)
Q Consensus 212 ~---n~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~ 277 (502)
+ +.......+.+.+. ++.....+++|++|++..+.+++..+..+.. +++|+.|+++ .|.+++. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 11100011222221 2233456889999999888888766556654 8999999996 5677653 333
Q ss_pred ccCCCCCCCEEEccCCc--CcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccc
Q 037195 278 WLDVLPELQVLTLRSNR--FRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQ 355 (502)
Q Consensus 278 ~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 355 (502)
.+..+++|++|+++.|. +++...... ...+++|++|++++|++++..... ....+++|++|++++|.++
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~--------~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGLME--------FSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHHHH--------HHTCCTTCCEEEEESCCCB
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCCCCHHHHHH--------HHhcCcccCeeeccCCCCc
Confidence 46678999999997644 443322111 123789999999999987532221 2244799999999999987
Q ss_pred cc-chhhhcCCCCCCEEeCcCCcCCCCCchhc-cCCCCCCEEeCCCC
Q 037195 356 GE-ILEVLGKLNSLKSLNISHNNLTGGIPSSL-RNLTELESLDLSSN 400 (502)
Q Consensus 356 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~n 400 (502)
+. ++..+..+++|+.|+|++|++++.-...+ ..++.++...+..+
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 65 44445679999999999999986533333 35676666555543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.4e-23 Score=194.37 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=157.4
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcC
Q 037195 155 PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKS 234 (502)
Q Consensus 155 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l 234 (502)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------~~~~~l 75 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-------------------------------GAYQSL 75 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-------------------------------TTTTTC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-------------------------------HHccCC
Confidence 4567777777777776666667777777777777776653322 345556
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCccc-CCCCCCCCCCCCccE
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGP-IDDTKTRVPFPKLRI 313 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~ 313 (502)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+ ..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~ 153 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEH 153 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCE
Confidence 6777888888877777667778888888888888888776666778888888888888888763 24444 55788888
Q ss_pred EEccCccCCCCCchhhhcCCchhHHHHhcccC----eeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCC
Q 037195 314 IDLSYNRFTGVLPIWYLHGNDIQMERILTTFA----TIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 389 (502)
Q Consensus 314 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 389 (502)
|++++|++++..+..+ ..+++|+ +|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+
T Consensus 154 L~Ls~N~l~~~~~~~~---------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDL---------RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp EECCSSCCCEECGGGG---------HHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred EECCCCCCCcCCHHHh---------hhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence 8888888876655443 3355665 899999999976666554 4589999999999997766778999
Q ss_pred CCCCEEeCCCCCCCccCc
Q 037195 390 TELESLDLSSNKLAGRIP 407 (502)
Q Consensus 390 ~~L~~L~ls~n~l~~~~p 407 (502)
++|++|++++|++.+..|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 999999999999997655
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.7e-22 Score=188.53 Aligned_cols=226 Identities=23% Similarity=0.270 Sum_probs=155.6
Q ss_pred EEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCc
Q 037195 4 RNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQ 83 (502)
Q Consensus 4 L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 83 (502)
++..+..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++.+..+.+|.++++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444443 5676654 478889999998887766688888999999999998887777788888999999999988
Q ss_pred CcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEc
Q 037195 84 LIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSI 163 (502)
Q Consensus 84 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 163 (502)
+++..+..+..+ ++|++|++++|.++......+. .+++|++|++
T Consensus 88 l~~~~~~~~~~l------------------~~L~~L~l~~n~l~~~~~~~~~------------------~l~~L~~L~l 131 (276)
T 2z62_A 88 IQSLALGAFSGL------------------SSLQKLVAVETNLASLENFPIG------------------HLKTLKELNV 131 (276)
T ss_dssp CCEECTTTTTTC------------------TTCCEEECTTSCCCCSTTCCCT------------------TCTTCCEEEC
T ss_pred cCccChhhhcCC------------------ccccEEECCCCCccccCchhcc------------------cCCCCCEEEC
Confidence 886655666665 7777777777776655442211 1345566666
Q ss_pred cCCcCccc-CCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCcc-EEe
Q 037195 164 SRNNLTGE-IPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLV-SLN 241 (502)
Q Consensus 164 ~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~-~L~ 241 (502)
++|.+++. +|..+..+++|++|++++|.+++..+..+... ..++.+. +++
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------------------------~~L~~l~l~L~ 183 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL----------------------------HQMPLLNLSLD 183 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH----------------------------HTCTTCCEEEE
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh----------------------------hhccccceeee
Confidence 66666543 46777778888888888887765443332211 1122222 677
Q ss_pred ccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCccc
Q 037195 242 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGP 298 (502)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 298 (502)
+++|.+.+..+..+. ..+|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus 184 ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 184 LSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 777777755544443 34788888888888777666677888888888888887743
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-22 Score=186.56 Aligned_cols=205 Identities=22% Similarity=0.258 Sum_probs=161.9
Q ss_pred CCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCC
Q 037195 181 YIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 260 (502)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (502)
..+.++++++.++..+. .+. ..++.|++++|.++.+ .+..+..+++|++|++++|.++...+..+..+++
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~-~~l~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIP-ADTKKLDLQSNKLSSL--------PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCC-TTCSEEECCSSCCSCC--------CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCEEEccCCCCCccCC-CCC-CCCCEEECcCCCCCee--------CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 47789999998886433 222 3488899987776643 2345677888999999999888766666788899
Q ss_pred CcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHH
Q 037195 261 LEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERI 340 (502)
Q Consensus 261 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 340 (502)
|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+..+ ..
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~---------~~ 155 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGVF---------DK 155 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT---------TT
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhHc---------cC
Confidence 9999999998887777778888999999999999887776655 568899999999998886555433 33
Q ss_pred hcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccC
Q 037195 341 LTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI 406 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 406 (502)
+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++....
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 788999999999988877777888889999999999988666667888889999999999887543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.4e-23 Score=193.72 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=119.2
Q ss_pred hhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCC
Q 037195 231 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPK 310 (502)
Q Consensus 231 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 310 (502)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~ 158 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTN 158 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTT
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCcc
Confidence 4456667777777777776666667777778888888887777666667777788888888887776655544 45677
Q ss_pred ccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCC
Q 037195 311 LRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT 390 (502)
Q Consensus 311 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 390 (502)
|+.|++++|++++..+..+ ..+++|++|++++|++++..+..++.+++|+.|++++|.+.+. ++
T Consensus 159 L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~ 222 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CP 222 (272)
T ss_dssp CCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TT
T ss_pred CCEEECCCCCcCccCHHHh---------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------Cc
Confidence 7777777777775554333 2367788888888888877777777888888888888877643 45
Q ss_pred CCCEEeCCCCCCCccCchhcccC
Q 037195 391 ELESLDLSSNKLAGRIPTQLASL 413 (502)
Q Consensus 391 ~L~~L~ls~n~l~~~~p~~~~~l 413 (502)
+|+.++++.|.++|.+|.++..+
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHHHHHHHhCCCcccCccccc
Confidence 67778888888888888766543
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.2e-25 Score=233.62 Aligned_cols=138 Identities=15% Similarity=0.078 Sum_probs=79.5
Q ss_pred CCCCcEEEccCCccCccCCcccC-CCCCCCEEEcc--C----CcCcccCCCC-C--CCCCCCCccEEEccCccCCCCCch
Q 037195 258 CRHLEVIDVGNNQINDTFPHWLD-VLPELQVLTLR--S----NRFRGPIDDT-K--TRVPFPKLRIIDLSYNRFTGVLPI 327 (502)
Q Consensus 258 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~ 327 (502)
+++|+.|++..|.+++.....+. .+++|+.|+++ + +.+++..... + ....+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 56666666666666544433333 35667777776 2 2333111000 0 012356677777755 34322111
Q ss_pred hhhcCCchhHHHHhcccCeeeccCCcccccchhhh-cCCCCCCEEeCcCCcCCCCCch-hccCCCCCCEEeCCCCCCCc
Q 037195 328 WYLHGNDIQMERILTTFATIDLSSNRFQGEILEVL-GKLNSLKSLNISHNNLTGGIPS-SLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 328 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ls~n~l~~ 404 (502)
. ....+++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|++|++++|+++.
T Consensus 450 ~--------l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 450 Y--------IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp H--------HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred H--------HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 1 11236778888888888876655555 5678888888888887543333 34457788888888888753
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.3e-22 Score=183.48 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=143.4
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPE 284 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 284 (502)
.+.++++++.++.++ ..+. +.+++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++
T Consensus 18 ~~~l~~~~~~l~~ip---------~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIP---------SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTEEECTTSCCSSCC---------SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCEEEccCCCCCccC---------CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 567777776666432 2221 45778888888887666667777888888888888877666666677888
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC
Q 037195 285 LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK 364 (502)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 364 (502)
|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..++.
T Consensus 87 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVF---------DSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHHh---------CcCcCCCEEECCCCcCCccCHhHccC
Confidence 8888888888776655544 557788888888888776655443 33777888888888887766666777
Q ss_pred CCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCCC
Q 037195 365 LNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGFP 443 (502)
Q Consensus 365 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~~ 443 (502)
+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..++.|+. ..+.+||+.|++.
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~------------L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM------------LQLQENPWDCTCN 222 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE------------EECCSSCBCCSSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE------------EEecCCCeeCCCc
Confidence 888888888888887666666777888888888888887655555555544432 2455666666654
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=8.8e-22 Score=184.54 Aligned_cols=200 Identities=21% Similarity=0.167 Sum_probs=121.9
Q ss_pred CCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCcc
Q 037195 136 NLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNF 215 (502)
Q Consensus 136 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 215 (502)
++++++++++.++......++.++.|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------ 72 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV------------------ 72 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC------------------
T ss_pred CccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC------------------
Confidence 34444444444433222233455555555665555555566666666666666665543111
Q ss_pred CCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcC
Q 037195 216 QDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRF 295 (502)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 295 (502)
...+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+..|..+++|++|++++|++
T Consensus 73 ---------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 73 ---------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp ---------------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred ---------------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 023344666666666655 3444555566666666666666555555555566666666666655
Q ss_pred cccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcC
Q 037195 296 RGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISH 375 (502)
Q Consensus 296 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 375 (502)
++..+..+ . .+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 137 ~~~~~~~~--~---------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 137 KTLPPGLL--T---------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCCCTTTT--T---------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccChhhc--c---------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 54433332 1 256666777777777766666677888999999999
Q ss_pred CcCCCCCchhccCCCCCCEEeCCCCCCCcc
Q 037195 376 NNLTGGIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 376 N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
|+++ .+|..+...++|+.|++++|++...
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9998 7787777888999999999998753
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=9.4e-22 Score=184.34 Aligned_cols=181 Identities=24% Similarity=0.285 Sum_probs=137.6
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 314 (502)
+.++.|++++|.+++..+..+..+++|++|++++|.+.+..+. ..+++|++|++++|.+... +..+ ..+++|++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~--~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSL-PLLG--QTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSC-CCCT--TTCTTCCEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcC-chhh--ccCCCCCEE
Confidence 3567777777777766666777778888888888877654332 6677888888888887743 3333 557888888
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCE
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELES 394 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 394 (502)
++++|++++..+..+ ..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++
T Consensus 106 ~l~~N~l~~l~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 106 DVSFNRLTSLPLGAL---------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp ECCSSCCCCCCSSTT---------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred ECCCCcCcccCHHHH---------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 888888886655444 34789999999999999888888899999999999999999666677889999999
Q ss_pred EeCCCCCCCccCchhcccCCCCCccCCCCCCCccCCCcccCCCCCCCC
Q 037195 395 LDLSSNKLAGRIPTQLASLNYLSVRPGGPQFNTFGNDSYSGNSGLCGF 442 (502)
Q Consensus 395 L~ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~n~~lc~~ 442 (502)
|++++|+++ .+|..+.....|+. ..+.+||+.|.+
T Consensus 177 L~L~~N~l~-~ip~~~~~~~~L~~------------l~L~~Np~~C~c 211 (290)
T 1p9a_G 177 LLLQENSLY-TIPKGFFGSHLLPF------------AFLHGNPWLCNC 211 (290)
T ss_dssp EECCSSCCC-CCCTTTTTTCCCSE------------EECCSCCBCCSG
T ss_pred EECCCCcCC-ccChhhcccccCCe------------EEeCCCCccCcC
Confidence 999999999 67776665544332 345677777754
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.2e-21 Score=179.86 Aligned_cols=160 Identities=20% Similarity=0.227 Sum_probs=140.0
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 314 (502)
+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh--cccCCCCEE
Confidence 468899999999988888888899999999999999988888888899999999999999987776665 568899999
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCE
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELES 394 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 394 (502)
++++|++++..+..+ ..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|++
T Consensus 113 ~L~~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 113 YLGGNQLKSLPSGVF---------DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp ECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EcCCCcCCCcChhHh---------ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 999999986655443 34889999999999999888878999999999999999999877888999999999
Q ss_pred EeCCCCCCCcc
Q 037195 395 LDLSSNKLAGR 405 (502)
Q Consensus 395 L~ls~n~l~~~ 405 (502)
|++++|++.+.
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 99999999876
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.5e-22 Score=188.36 Aligned_cols=144 Identities=20% Similarity=0.198 Sum_probs=99.5
Q ss_pred chhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 037195 230 TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFP 309 (502)
Q Consensus 230 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 309 (502)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~ 181 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF--DKLT 181 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCT
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh--cCCc
Confidence 34556667777777777776666666777777777777777776666666777777777777777776555444 4567
Q ss_pred CccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCC
Q 037195 310 KLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 389 (502)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 389 (502)
+|++|++++|++++..+..+ ..+++|+.|++++|.+.+ .++.|+.|++..|.++|.+|..++.+
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVF---------DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTT---------TTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCCEEECCCCcCCccCHHHH---------hCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 77777777777776555433 236777888888887663 35567778888888888888777655
Q ss_pred CC
Q 037195 390 TE 391 (502)
Q Consensus 390 ~~ 391 (502)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=2.3e-24 Score=223.90 Aligned_cols=381 Identities=13% Similarity=0.122 Sum_probs=220.6
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccc---cCCcC------------CCCCCCCCEEeccCCcCCccCCcc
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSG---HIPSS------------FSNLQQLRLLDLRYNNFVGKIPDI 67 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~---~~~~~------------~~~l~~L~~L~L~~n~~~~~~~~~ 67 (502)
.+++..+. ...|..+...+++|+.|+++++.... ..|.. ...+++|++|++++|.+.+..+..
T Consensus 47 ~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 47 KVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp EEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34554433 23444555577888888888874221 11111 235678888888888777665555
Q ss_pred cC-CCCCCCEEEcccC-cCccc-CChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC-------CCCCCC
Q 037195 68 FT-NLTRLSYLGLGGN-QLIGS-IPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH-------LPWKNL 137 (502)
Q Consensus 68 ~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~L 137 (502)
+. .+++|++|++++| .+... ++..+..+ ++|++|++++|.+++... ..+++|
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~------------------~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATC------------------RNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHC------------------TTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC------------------CCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 54 5788888888877 33321 22222233 778888888877655332 245678
Q ss_pred ceEeCcCCc--CCccCC----CCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcC-------c-----------
Q 037195 138 EYLHLDSNL--LQGSLL----NLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSL-------S----------- 193 (502)
Q Consensus 138 ~~L~l~~n~--l~~~~~----~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-------~----------- 193 (502)
++|++++|. +..... ..+++|++|++++|...+.++..+..+++|+.|++..+.. .
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 888887775 221111 1157788888877732223555566667777776544321 0
Q ss_pred ------------ccccccccc-ccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCcccc-CCCccccCCC
Q 037195 194 ------------GQILQCLGN-STLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEG-PLPPSLVNCR 259 (502)
Q Consensus 194 ------------~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~ 259 (502)
..++..... ..|+.|++++|.++.. .+...+..+++|++|++++| +.. .++.....++
T Consensus 267 L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY-------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp CCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH-------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred cccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH-------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 011111112 2377777766553311 12223445677777777776 321 1222223467
Q ss_pred CCcEEEccC---------CccCccCCcccC-CCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc--C----ccCCC
Q 037195 260 HLEVIDVGN---------NQINDTFPHWLD-VLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS--Y----NRFTG 323 (502)
Q Consensus 260 ~L~~L~L~~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~--~----n~l~~ 323 (502)
+|++|++.+ +.+++.....+. .+++|++|.+..|.+++....... ..+++|+.|+++ + +.++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-HHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-hhCCCcceeEeecccCCCcccccC
Confidence 777777732 344332222222 367788887777776543222110 236788888888 3 34442
Q ss_pred CCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC-CCCCCEEeCcCCcCCCCCchhc-cCCCCCCEEeCCCCC
Q 037195 324 VLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK-LNSLKSLNISHNNLTGGIPSSL-RNLTELESLDLSSNK 401 (502)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~n~ 401 (502)
.....- .......+++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|++|++++|+
T Consensus 418 ~~~~~~----~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 418 EPLDIG----FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp CCTHHH----HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred CchhhH----HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 211100 012245688999999988 777766666665 8999999999999976555554 668999999999999
Q ss_pred CCccCch-hcccCCCCC
Q 037195 402 LAGRIPT-QLASLNYLS 417 (502)
Q Consensus 402 l~~~~p~-~~~~l~~L~ 417 (502)
+++..+. ....++.|+
T Consensus 493 ~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 493 FGDKALLANASKLETMR 509 (594)
T ss_dssp CCHHHHHHTGGGGGGSS
T ss_pred CcHHHHHHHHHhCCCCC
Confidence 9654443 223344444
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.7e-24 Score=209.22 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=50.9
Q ss_pred HhcccCeeeccCCccccc----chhhhc--CCCCCCEEeCcCCcCCC----CCchhc-cCCCCCCEEeCCCCCCCccCc
Q 037195 340 ILTTFATIDLSSNRFQGE----ILEVLG--KLNSLKSLNISHNNLTG----GIPSSL-RNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 340 ~~~~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~ls~n~l~~~~p 407 (502)
.+++|++|+|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 366777777777777755 455553 38888888888888886 377766 567889999999998887664
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2e-23 Score=202.61 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=60.0
Q ss_pred EEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCC----cCCCCCC-CCCEEeccCCcCCccCCcccCCC-----C
Q 037195 3 LRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIP----SSFSNLQ-QLRLLDLRYNNFVGKIPDIFTNL-----T 72 (502)
Q Consensus 3 ~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~ 72 (502)
.+++++|.+++.+|..+. ..++|++|++++|.+++..+ +.|..++ +|++|+|++|.+.+..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 467777777777666554 55558888888777775544 5566676 77777777777776555555553 7
Q ss_pred CCCEEEcccCcCcccCChhhh
Q 037195 73 RLSYLGLGGNQLIGSIPSSIF 93 (502)
Q Consensus 73 ~L~~L~L~~n~l~~~~p~~~~ 93 (502)
+|++|+|++|.+++..+..++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHH
T ss_pred CccEEECcCCcCChHHHHHHH
Confidence 777777777777655555444
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.1e-22 Score=195.53 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=34.7
Q ss_pred hhcCC-CccEEeccCC--ccc-cCCCccccCCCCCcEEEccCCc-cCccCCcccCCCCCCCEEEccCCc
Q 037195 231 FAKSC-VLVSLNLNGN--RLE-GPLPPSLVNCRHLEVIDVGNNQ-INDTFPHWLDVLPELQVLTLRSNR 294 (502)
Q Consensus 231 ~~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 294 (502)
+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 34444 5556666555 232 2334444555666666666665 444445555556666666666654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.7e-23 Score=199.83 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCCcEEEccCCccCc-----cCCcccCCCCCCCEEEccCCcCc----ccCCCCCCCCCCCCccEEEccCccCCCCCch
Q 037195 257 NCRHLEVIDVGNNQIND-----TFPHWLDVLPELQVLTLRSNRFR----GPIDDTKTRVPFPKLRIIDLSYNRFTGVLPI 327 (502)
Q Consensus 257 ~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 327 (502)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.++ +.++..+ ..+++|+.|++++|.+++....
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--KSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCCCCHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCCCchhhHH
Confidence 34444444444444431 12223444555555555555543 2222222 3345566666666655533111
Q ss_pred hhhcCCchhHHHH--hcccCeeeccCCcccc----cchhhh-cCCCCCCEEeCcCCcCCCCCc
Q 037195 328 WYLHGNDIQMERI--LTTFATIDLSSNRFQG----EILEVL-GKLNSLKSLNISHNNLTGGIP 383 (502)
Q Consensus 328 ~~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~p 383 (502)
.+. ..+.. +++|++|+|++|.+++ .+|..+ ..+++|+.|++++|++++..+
T Consensus 263 ~l~-----~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVV-----DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHH-----HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHH-----HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 110 11111 6788888888888887 466666 668999999999999987664
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=183.94 Aligned_cols=226 Identities=19% Similarity=0.206 Sum_probs=130.6
Q ss_pred CCCCcEEEccCCcccccCCc---CCCCCCCCCEEeccCCcCCccCCccc--CCCCCCCEEEcccCcCcccCC----hhhh
Q 037195 23 ITQLAYLDLSFNSFSGHIPS---SFSNLQQLRLLDLRYNNFVGKIPDIF--TNLTRLSYLGLGGNQLIGSIP----SSIF 93 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~ 93 (502)
...++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45678888888876531100 12345679999999999998888888 899999999999999886544 2222
Q ss_pred cccCCeeccccchhhhhhccCcccEEECCCCcCcccCCC---CCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcc
Q 037195 94 ELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHL---PWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTG 170 (502)
Q Consensus 94 ~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 170 (502)
.+ ++|++|++++|.+++.++. .+++|++|+++ +|++.+
T Consensus 143 ~~------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls---------------------~N~l~~ 183 (310)
T 4glp_A 143 LK------------------PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS---------------------DNPGLG 183 (310)
T ss_dssp BC------------------SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC---------------------SCTTCH
T ss_pred hc------------------cCCCEEEeeCCCcchhhHHHhccCCCCCEEECC---------------------CCCCcc
Confidence 23 8999999999888766542 23333333333 333321
Q ss_pred c--C--CccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCc
Q 037195 171 E--I--PSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNR 246 (502)
Q Consensus 171 ~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 246 (502)
. . +..+..+++|++|++++|.++..... ....+..+++|++|++++|.
T Consensus 184 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----------------------------~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 184 ERGLMAALCPHKFPAIQNLALRNTGMETPTGV----------------------------CAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH----------------------------HHHHHHHTCCCSSEECTTSC
T ss_pred chhhhHHHhhhcCCCCCEEECCCCCCCchHHH----------------------------HHHHHhcCCCCCEEECCCCC
Confidence 1 0 11223455555555555554321100 00112344556666666666
Q ss_pred cccCCCccccCC---CCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCC
Q 037195 247 LEGPLPPSLVNC---RHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFT 322 (502)
Q Consensus 247 l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 322 (502)
+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++... . ..+++|+.|++++|+++
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~--~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--P--DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--T--TSCCCCSCEECSSTTTS
T ss_pred CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--h--hhCCCccEEECcCCCCC
Confidence 665555544444 46666666666665 3344332 566666666666654311 1 33455555555555544
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=5.4e-21 Score=174.28 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=126.4
Q ss_pred CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCc-CccccccccccccccEEEccCCccCCCCCCeeeccCccchh
Q 037195 154 LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNS-LSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFA 232 (502)
Q Consensus 154 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 232 (502)
..+++++|++++|.+++..+..+..+++|++|++++|. ++...+ ..|.
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-------------------------------~~f~ 77 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-------------------------------HSFY 77 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-------------------------------TTEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-------------------------------hHcC
Confidence 33456666666666665555566666666666666664 442221 2344
Q ss_pred cCCCccEEeccC-CccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCC---EEEccCC-cCcccCCCCCCCCC
Q 037195 233 KSCVLVSLNLNG-NRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQ---VLTLRSN-RFRGPIDDTKTRVP 307 (502)
Q Consensus 233 ~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~ 307 (502)
.+++|++|++++ |.+++..+..+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+++..+..+ ..
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~ 153 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QG 153 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TT
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cc
Confidence 556677777776 66665555667777777777777777755 343 66666666 7777777 6666555444 45
Q ss_pred CCCcc-EEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCc-ccccchhhhcCC-CCCCEEeCcCCcCCCCCch
Q 037195 308 FPKLR-IIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNR-FQGEILEVLGKL-NSLKSLNISHNNLTGGIPS 384 (502)
Q Consensus 308 l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~ 384 (502)
+++|+ .|++++|+++ .+|.... . .++|++|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|.
T Consensus 154 l~~L~~~L~l~~n~l~-~i~~~~~--------~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~ 222 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT-SVQGYAF--------N-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222 (239)
T ss_dssp TBSSEEEEECCSCCCC-EECTTTT--------T-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC
T ss_pred hhcceeEEEcCCCCCc-ccCHhhc--------C-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh
Confidence 66777 7777777766 3333221 1 2567777777774 776666667777 77888888888777 3443
Q ss_pred hccCCCCCCEEeCCCC
Q 037195 385 SLRNLTELESLDLSSN 400 (502)
Q Consensus 385 ~l~~l~~L~~L~ls~n 400 (502)
. .+++|+.|+++++
T Consensus 223 ~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 K--GLEHLKELIARNT 236 (239)
T ss_dssp T--TCTTCSEEECTTC
T ss_pred h--HhccCceeeccCc
Confidence 3 4667777777765
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.8e-22 Score=195.98 Aligned_cols=260 Identities=16% Similarity=0.172 Sum_probs=172.7
Q ss_pred eCcCCcCCccCCCC---CCCccEEEccCCcCcccCC----ccccCCC-CCCEEECCCCcCcccccccccc------cccc
Q 037195 141 HLDSNLLQGSLLNL---PPHMREFSISRNNLTGEIP----SSFCNLS-YIRFFDSSNNSLSGQILQCLGN------STLD 206 (502)
Q Consensus 141 ~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~------~~L~ 206 (502)
+++.|.+++..+.. .++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+.. ..|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 34444444433322 3457777777777765555 5566677 7888888888777765555544 3488
Q ss_pred EEEccCCccCCCCCCeeeccCccchhcC-CCccEEeccCCccccCCCccc----cC-CCCCcEEEccCCccCccCC----
Q 037195 207 TLDLGMNNFQDMRMNKFSGSLPQTFAKS-CVLVSLNLNGNRLEGPLPPSL----VN-CRHLEVIDVGNNQINDTFP---- 276 (502)
Q Consensus 207 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~---- 276 (502)
.|++++|.++......+ ...+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+...
T Consensus 84 ~L~Ls~n~l~~~~~~~l----~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDEL----VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp EEECCSSCGGGSCHHHH----HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred EEECcCCcCChHHHHHH----HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88887776654322111 1224444 689999999999876655443 33 3689999999998875443
Q ss_pred cccCCCC-CCCEEEccCCcCcccCCCCCC--CCCC-CCccEEEccCccCCCCCchhhhcCCchhHHHH-hcccCeeeccC
Q 037195 277 HWLDVLP-ELQVLTLRSNRFRGPIDDTKT--RVPF-PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERI-LTTFATIDLSS 351 (502)
Q Consensus 277 ~~~~~l~-~L~~L~l~~n~~~~~~~~~~~--~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~Ls~ 351 (502)
..+..++ +|++|++++|.+++..+..+. ...+ ++|++|++++|.+.+.....+. ..+.. .++|++|+|++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~-----~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA-----YIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-----HHHHHSCTTCCEEECCS
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH-----HHHhcCCCCceEEECcC
Confidence 3344555 899999999998765432210 0224 5899999999998764332221 11222 45899999999
Q ss_pred Ccccccch----hhhcCCCCCCEEeCcCCcCCCCCc-------hhccCCCCCCEEeCCCCCCCccCchh
Q 037195 352 NRFQGEIL----EVLGKLNSLKSLNISHNNLTGGIP-------SSLRNLTELESLDLSSNKLAGRIPTQ 409 (502)
Q Consensus 352 n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~ls~n~l~~~~p~~ 409 (502)
|.+++..+ ..+..+++|+.|+|++|.+.+..+ ..+..+++|+.||+++|++....+..
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 99987655 345678999999999999654333 35778889999999999998765443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.1e-20 Score=172.33 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=66.6
Q ss_pred ccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCc-CCccCCcccCCCCCCCEEEccc-CcCcccCCh
Q 037195 13 GSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNN-FVGKIPDIFTNLTRLSYLGLGG-NQLIGSIPS 90 (502)
Q Consensus 13 ~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~ 90 (502)
..+|. +. ++|++|++++|.+++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |++++..+.
T Consensus 24 ~~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 35666 43 378888888888886666678888888888888886 7766666788888888888887 777743334
Q ss_pred hhhcccCCeeccccchhhhhhccCcccEEECCCCcCccc
Q 037195 91 SIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 91 ~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
.+..+ ++|++|++++|.++++
T Consensus 100 ~f~~l------------------~~L~~L~l~~n~l~~l 120 (239)
T 2xwt_C 100 ALKEL------------------PLLKFLGIFNTGLKMF 120 (239)
T ss_dssp SEECC------------------TTCCEEEEEEECCCSC
T ss_pred HhCCC------------------CCCCEEeCCCCCCccc
Confidence 45544 5666666666655543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=181.62 Aligned_cols=164 Identities=22% Similarity=0.235 Sum_probs=98.8
Q ss_pred hcCCCccEEeccCCccccCCC----ccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCccc--CCCCCCC
Q 037195 232 AKSCVLVSLNLNGNRLEGPLP----PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGP--IDDTKTR 305 (502)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~ 305 (502)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+.....
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 455566666666666665433 2234566777777777777666666666777777777777766542 1111111
Q ss_pred CCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCC---CCCCEEeCcCCcCCCCC
Q 037195 306 VPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKL---NSLKSLNISHNNLTGGI 382 (502)
Q Consensus 306 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~ 382 (502)
..+++|++|++++|+++...+.. ....+.+++|++|||++|++++..|..+..+ ++|++|+|++|+++ .+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l 266 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVC------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV 266 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHH------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC
T ss_pred hcCCCCCEEECCCCCCCchHHHH------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-ch
Confidence 34667777777777765221110 0112446777777777777776656555554 57777777777777 55
Q ss_pred chhccCCCCCCEEeCCCCCCCc
Q 037195 383 PSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 383 p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
|..+. ++|++|++++|++++
T Consensus 267 p~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 267 PKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CSCCC--SCCSCEECCSCCCCS
T ss_pred hhhhc--CCCCEEECCCCcCCC
Confidence 65553 677777777777775
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.3e-20 Score=176.71 Aligned_cols=191 Identities=18% Similarity=0.267 Sum_probs=109.6
Q ss_pred CCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCC
Q 037195 156 PHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSC 235 (502)
Q Consensus 156 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~ 235 (502)
++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~---------------------------------~~~l~ 85 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP---------------------------------LKNLT 85 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---------------------------------GTTCC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh---------------------------------HccCC
Confidence 445555555555543 22 35556666666666666553322 33444
Q ss_pred CccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEE
Q 037195 236 VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIID 315 (502)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 315 (502)
+|++|++++|.+.+. + .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ + ..+++|+.|+
T Consensus 86 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~ 157 (308)
T 1h6u_A 86 KITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--L--AGLTNLQYLS 157 (308)
T ss_dssp SCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEE
T ss_pred CCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--c--cCCCCccEEE
Confidence 455555555555432 2 3555556666666666554432 25556666666666666554433 1 3456666666
Q ss_pred ccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEE
Q 037195 316 LSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 395 (502)
Q Consensus 316 L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 395 (502)
+++|.+++..+ + ..+++|+.|++++|.+++..+ +..+++|+.|++++|++++.. .+..+++|+.|
T Consensus 158 l~~n~l~~~~~--l---------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L 222 (308)
T 1h6u_A 158 IGNAQVSDLTP--L---------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIV 222 (308)
T ss_dssp CCSSCCCCCGG--G---------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEE
T ss_pred ccCCcCCCChh--h---------cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEE
Confidence 66666654322 1 236667777777777765433 666777777777777777443 26677777777
Q ss_pred eCCCCCCCc
Q 037195 396 DLSSNKLAG 404 (502)
Q Consensus 396 ~ls~n~l~~ 404 (502)
++++|++++
T Consensus 223 ~l~~N~i~~ 231 (308)
T 1h6u_A 223 TLTNQTITN 231 (308)
T ss_dssp EEEEEEEEC
T ss_pred EccCCeeec
Confidence 777777764
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.9e-20 Score=173.83 Aligned_cols=60 Identities=27% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCc
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLI 85 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (502)
++++|+.|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++.
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence 4566777777777665 333 466667777777777766643 32 666677777777776665
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.9e-22 Score=190.53 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=66.6
Q ss_pred hhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCC-ccCcc-CCcccCCCCCCCEEEccCC-cCccc-CCCCCCCC
Q 037195 231 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN-QINDT-FPHWLDVLPELQVLTLRSN-RFRGP-IDDTKTRV 306 (502)
Q Consensus 231 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~ 306 (502)
+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+ .
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~ 191 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--A 191 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--H
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--H
Confidence 333444444444444444333344444444444444444 33321 2333344444444444444 44321 11111 2
Q ss_pred CCC-CccEEEccCc--cCC-CCCchhhhcCCchhHHHHhcccCeeeccCCc-ccccchhhhcCCCCCCEEeCcCCc-CCC
Q 037195 307 PFP-KLRIIDLSYN--RFT-GVLPIWYLHGNDIQMERILTTFATIDLSSNR-FQGEILEVLGKLNSLKSLNISHNN-LTG 380 (502)
Q Consensus 307 ~l~-~L~~L~L~~n--~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 380 (502)
.++ +|++|++++| .++ +.++. ....+++|++|++++|. +++..+..+..+++|+.|++++|. ++.
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLST---------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHH---------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHH---------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 234 4555555444 222 11111 11234555555555555 444444445555555555555553 211
Q ss_pred CCchhccCCCCCCEEeCCCC
Q 037195 381 GIPSSLRNLTELESLDLSSN 400 (502)
Q Consensus 381 ~~p~~l~~l~~L~~L~ls~n 400 (502)
.....+..+++|++|++++|
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhcCCCCCEEeccCc
Confidence 11113444555555555555
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.2e-19 Score=159.92 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=96.5
Q ss_pred EeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCC
Q 037195 140 LHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMR 219 (502)
Q Consensus 140 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 219 (502)
++.+++.++.......++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------- 68 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP----------------------- 68 (208)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------------------
T ss_pred EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-----------------------
Confidence 334444443333333445555555555555444444555666666666665554221
Q ss_pred CCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccC
Q 037195 220 MNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPI 299 (502)
Q Consensus 220 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 299 (502)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 69 --------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 69 --------NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp --------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 122344555666666666666555555666667777777777666655555666666777777666666554
Q ss_pred CCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCC
Q 037195 300 DDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKL 365 (502)
Q Consensus 300 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 365 (502)
+..+ ..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|..++.+
T Consensus 141 ~~~~--~~l~~L~~L~l~~N~~~~~----------------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 141 DGVF--DRLTSLQYIWLHDNPWDCT----------------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTTT--TTCTTCCEEECCSCCBCCC----------------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred HHHh--ccCCCccEEEecCCCeecC----------------CCCHHHHHHHHHhCCceeeccCccc
Confidence 4333 3455666666666655432 3444555555555555555544433
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1e-18 Score=160.41 Aligned_cols=159 Identities=22% Similarity=0.279 Sum_probs=81.0
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhc
Q 037195 155 PPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAK 233 (502)
Q Consensus 155 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 233 (502)
.+.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+.... |+.|++++|.++.+ .+..+..
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~ 105 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL--------PLGVFDH 105 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--------CTTTTTT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc--------ChhHhcc
Confidence 34555666666666655555666777777777777766654443333322 44444433333211 1223344
Q ss_pred CCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccE
Q 037195 234 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRI 313 (502)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 313 (502)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ ..+++|+.
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~ 183 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF--DRLGKLQT 183 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH--hCCCCCCE
Confidence 4555555555555554444444555555555555555554444445555555555555555554443333 33445555
Q ss_pred EEccCccCCC
Q 037195 314 IDLSYNRFTG 323 (502)
Q Consensus 314 L~L~~n~l~~ 323 (502)
|++++|++.+
T Consensus 184 L~l~~N~~~c 193 (251)
T 3m19_A 184 ITLFGNQFDC 193 (251)
T ss_dssp EECCSCCBCT
T ss_pred EEeeCCceeC
Confidence 5555554443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3.1e-19 Score=181.18 Aligned_cols=149 Identities=24% Similarity=0.324 Sum_probs=95.5
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 314 (502)
++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++... .+++|+.|
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L 165 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE------LPTSLEVL 165 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEE
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC------cCCCcCEE
Confidence 445666666666654 443 333 66666666666655 333 45666666666666665222 24566666
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCC-------CEEeCcCCcCCCCCchhcc
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSL-------KSLNISHNNLTGGIPSSLR 387 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~p~~l~ 387 (502)
++++|++++ +|. + .++|+.|+|++|+++ .+|. +.. +| +.|+|++|+|+ .+|..+.
T Consensus 166 ~Ls~N~L~~-lp~-l-----------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~ 227 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-L-----------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL 227 (571)
T ss_dssp ECCSSCCSC-CCC-C-----------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred ECCCCCCCC-cch-h-----------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence 776666665 333 2 256777777777776 3444 443 56 88888888888 6787777
Q ss_pred CCCCCCEEeCCCCCCCccCchhcccCCC
Q 037195 388 NLTELESLDLSSNKLAGRIPTQLASLNY 415 (502)
Q Consensus 388 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 415 (502)
.+++|+.|++++|++++.+|..+..+..
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 7888999999999998888888777654
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.2e-19 Score=159.86 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=126.6
Q ss_pred CCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEE
Q 037195 235 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRII 314 (502)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 314 (502)
+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEE
Confidence 468888888888887666677888888888888888877766777888888888888888886665544 567888888
Q ss_pred EccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCE
Q 037195 315 DLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELES 394 (502)
Q Consensus 315 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 394 (502)
++++|++++..+..+ ..+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .+++|++
T Consensus 106 ~L~~N~l~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 169 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 169 (208)
T ss_dssp ECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHH
T ss_pred EcCCCcCcccCHhHh---------ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHH
Confidence 888888876555433 337888888888888887777778888889999998887763 3567888
Q ss_pred EeCCCCCCCccCchhcccCC
Q 037195 395 LDLSSNKLAGRIPTQLASLN 414 (502)
Q Consensus 395 L~ls~n~l~~~~p~~~~~l~ 414 (502)
|+++.|+++|.+|++++.+.
T Consensus 170 L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHhCCceeeccCcccc
Confidence 88888888888888776543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.7e-18 Score=166.98 Aligned_cols=240 Identities=20% Similarity=0.184 Sum_probs=141.9
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCC-cccCCCCCCCE-EEc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIP-DIFTNLTRLSY-LGL 79 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~L 79 (502)
++++.++++++ .||..++ ++++.|+|++|.|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45677777776 7777664 578888888888885555678888888888888888765444 56788888765 556
Q ss_pred ccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCcc
Q 037195 80 GGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMR 159 (502)
Q Consensus 80 ~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 159 (502)
+.|+++...|..+..+ ++|++|++++|.++..+...+.. ...+.
T Consensus 88 ~~N~l~~l~~~~f~~l------------------~~L~~L~l~~n~l~~~~~~~~~~------------------~~~l~ 131 (350)
T 4ay9_X 88 KANNLLYINPEAFQNL------------------PNLQYLLISNTGIKHLPDVHKIH------------------SLQKV 131 (350)
T ss_dssp EETTCCEECTTSBCCC------------------TTCCEEEEEEECCSSCCCCTTCC------------------BSSCE
T ss_pred cCCcccccCchhhhhc------------------cccccccccccccccCCchhhcc------------------cchhh
Confidence 6677774445556555 67777777777766655422110 12233
Q ss_pred EEEccC-CcCcccCCccccCCC-CCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 160 EFSISR-NNLTGEIPSSFCNLS-YIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 160 ~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
.+++.+ +.+....+..|..+. .++.|++++|.++...+..+ ...++
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f--------------------------------~~~~L 179 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF--------------------------------NGTQL 179 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS--------------------------------TTEEE
T ss_pred hhhhccccccccccccchhhcchhhhhhccccccccCCChhhc--------------------------------cccch
Confidence 444433 233333333344332 35556666665553332222 22345
Q ss_pred cEEeccC-CccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 238 VSLNLNG-NRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 238 ~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
+.+++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-....|. . ..+++|+.+++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l--~~l~~L~~l~l 253 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-L--EKLVALMEASL 253 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-T--TTCCSCCEEEC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-c--hhCcChhhCcC
Confidence 6666653 4444344445677777777777777776554433 34555555554443333332 2 45778888887
Q ss_pred cCc
Q 037195 317 SYN 319 (502)
Q Consensus 317 ~~n 319 (502)
.++
T Consensus 254 ~~~ 256 (350)
T 4ay9_X 254 TYP 256 (350)
T ss_dssp SCH
T ss_pred CCC
Confidence 654
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.3e-18 Score=166.13 Aligned_cols=245 Identities=17% Similarity=0.108 Sum_probs=170.9
Q ss_pred ceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccc-ccccccc-cc-EEEccCCc
Q 037195 138 EYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQIL-QCLGNST-LD-TLDLGMNN 214 (502)
Q Consensus 138 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~-L~-~L~l~~n~ 214 (502)
++++.+++.++..+...++++++|++++|.++...+..|.++++|++|++++|.+.+.++ ..+.... +. .+.+..|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 344555555554333335677888888888886655678889999999999998866544 3444443 44 45555555
Q ss_pred cCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccC-CccCccCCcccCCCC-CCCEEEccC
Q 037195 215 FQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGN-NQINDTFPHWLDVLP-ELQVLTLRS 292 (502)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~ 292 (502)
++. ..|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 92 l~~--------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 92 LLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp CCE--------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred ccc--------cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 543 3356677889999999999999877666666777888898866 567666666676664 688999999
Q ss_pred CcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEe
Q 037195 293 NRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLN 372 (502)
Q Consensus 293 n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 372 (502)
|.++...+..+ ...+|+.+++++++..+.+|...+ ..+++|++||+++|+++...+.. +.+|+.|.
T Consensus 164 N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~f--------~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~ 229 (350)
T 4ay9_X 164 NGIQEIHNSAF---NGTQLDELNLSDNNNLEELPNDVF--------HGASGPVILDISRTRIHSLPSYG---LENLKKLR 229 (350)
T ss_dssp SCCCEECTTSS---TTEEEEEEECTTCTTCCCCCTTTT--------TTEECCSEEECTTSCCCCCCSSS---CTTCCEEE
T ss_pred ccccCCChhhc---cccchhHHhhccCCcccCCCHHHh--------ccCcccchhhcCCCCcCccChhh---hccchHhh
Confidence 99987665554 356899999986554445554322 34899999999999999655544 45677777
Q ss_pred CcCCcCCCCCchhccCCCCCCEEeCCCCCCCcc
Q 037195 373 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR 405 (502)
Q Consensus 373 L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 405 (502)
+.++.--..+| .+..+++|+.++++++.-...
T Consensus 230 ~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c~~ 261 (350)
T 4ay9_X 230 ARSTYNLKKLP-TLEKLVALMEASLTYPSHCCA 261 (350)
T ss_dssp CTTCTTCCCCC-CTTTCCSCCEEECSCHHHHHH
T ss_pred hccCCCcCcCC-CchhCcChhhCcCCCCccccc
Confidence 66553333677 477899999999987654433
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=154.43 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=126.3
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCC-cccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFP-HWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
+.+++++|.++. +|..+ .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+ ..+++|++|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF--EGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh--CCCCCCCEEEC
Confidence 567777777763 45433 2356788888888876644 457788888888888888887766555 56788888888
Q ss_pred cCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 037195 317 SYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396 (502)
Q Consensus 317 ~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 396 (502)
++|.+++..+..+ ..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|+
T Consensus 89 s~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMF---------KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGG---------TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCccCccCHhHh---------cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 8888887666544 3488999999999999988899999999999999999999988899999999999999
Q ss_pred CCCCCCCccCc
Q 037195 397 LSSNKLAGRIP 407 (502)
Q Consensus 397 ls~n~l~~~~p 407 (502)
+++|++.+..+
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 99999987655
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.9e-18 Score=173.14 Aligned_cols=194 Identities=23% Similarity=0.340 Sum_probs=107.5
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 25 QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
+|+.|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~----------- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP----------- 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-----------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-----------
Confidence 66667776666664 55444 256666777666666 455 345666666666666663 554 21
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCE
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRF 184 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 184 (502)
.+|++|++++|.+++++. .+++|+.|++++|.+++ ++..+++|+.|++++|.+++ +|. +. ++
T Consensus 120 ---------~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~--- 181 (571)
T 3cvr_A 120 ---------ASLKHLDVDNNQLTMLPE-LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP--ES--- 181 (571)
T ss_dssp ---------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC--TT---
T ss_pred ---------cCCCEEECCCCcCCCCCC-cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh--CC---
Confidence 356666666666666544 45555555555555554 22234445555555554443 333 32 44
Q ss_pred EECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEE
Q 037195 185 FDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVI 264 (502)
Q Consensus 185 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (502)
|+.|++++|.++.++. +.+ .-+...+.|+.|++++|.++ .+|..+..+++|+.|
T Consensus 182 --------------------L~~L~Ls~N~L~~lp~--~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 182 --------------------LEALDVSTNLLESLPA--VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp --------------------CCEEECCSSCCSSCCC--CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred --------------------CCEEECcCCCCCchhh--HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 5555554444443221 110 00111223477888888877 466666668888888
Q ss_pred EccCCccCccCCcccCCC
Q 037195 265 DVGNNQINDTFPHWLDVL 282 (502)
Q Consensus 265 ~L~~n~l~~~~~~~~~~l 282 (502)
++++|.+++..|..+..+
T Consensus 236 ~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSSCCHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHh
Confidence 888888877766665543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.3e-18 Score=153.39 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=111.0
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
+.++.+++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ ..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence 45555666555 3333332 466667777776666655566666777777777777666655555 456677777777
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeC
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 397 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 397 (502)
+|+++...+..+ ..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 89 ~N~l~~l~~~~f---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLF---------EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHc---------cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 777664433322 23788888888888888888888999999999999999999777778999999999999
Q ss_pred CCCCCCcc
Q 037195 398 SSNKLAGR 405 (502)
Q Consensus 398 s~n~l~~~ 405 (502)
++|++...
T Consensus 160 ~~N~~~c~ 167 (220)
T 2v9t_B 160 AQNPFICD 167 (220)
T ss_dssp CSSCEECS
T ss_pred CCCCcCCC
Confidence 99998753
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.2e-17 Score=150.66 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=115.5
Q ss_pred ccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 237 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
.+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+ ..+++|++|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEEC
Confidence 455666666665 334332 2667777777777777667777777777777777777765554444 45677777777
Q ss_pred cCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 037195 317 SYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396 (502)
Q Consensus 317 ~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 396 (502)
++|++++..+..+ ..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 96 s~N~l~~l~~~~~---------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVF---------DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTT---------TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhHh---------CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 7777775544433 23788888888888888 6677888999999999999999977777899999999999
Q ss_pred CCCCCCCccCc
Q 037195 397 LSSNKLAGRIP 407 (502)
Q Consensus 397 ls~n~l~~~~p 407 (502)
+++|++.+..+
T Consensus 166 l~~N~~~c~c~ 176 (229)
T 3e6j_A 166 LFGNPWDCECR 176 (229)
T ss_dssp CTTSCBCTTBG
T ss_pred eeCCCccCCcc
Confidence 99999987654
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.9e-18 Score=165.15 Aligned_cols=179 Identities=20% Similarity=0.188 Sum_probs=135.6
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCcccc-CCCCCcEEEccCCccCccCCcccCCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV-NCRHLEVIDVGNNQINDTFPHWLDVLP 283 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~ 283 (502)
-+.++++++.++.++ ..+. ..++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..++
T Consensus 20 ~~~l~c~~~~l~~iP---------~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 20 SNILSCSKQQLPNVP---------QSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TTEEECCSSCCSSCC---------SSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCEEEeCCCCcCccC---------ccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 467888777766443 2222 3478889999988877777776 888899999999988887777888888
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhh-
Q 037195 284 ELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVL- 362 (502)
Q Consensus 284 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~- 362 (502)
+|++|++++|++++..+..+ ..+++|+.|+|++|++.+..|..+ ..+++|+.|+|++|++++..+..|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~---------~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNAF---------EDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp TCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CCCEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCcccEECHHHh---------CCcccCCEEECCCCcCCeeCHHHhc
Confidence 99999999988887766655 567888888888888887666544 347888888888888887655555
Q ss_pred --cCCCCCCEEeCcCCcCCCCCchhccCCCC--CCEEeCCCCCCCcc
Q 037195 363 --GKLNSLKSLNISHNNLTGGIPSSLRNLTE--LESLDLSSNKLAGR 405 (502)
Q Consensus 363 --~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~ls~n~l~~~ 405 (502)
..+++|+.|+|++|+|++..+..+..++. ++.|++++|++...
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 56888888888888888655567777776 47888888888753
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5e-18 Score=164.44 Aligned_cols=179 Identities=23% Similarity=0.217 Sum_probs=143.0
Q ss_pred CEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchh-cCCCccEEeccCCccccCCCccccCCCCC
Q 037195 183 RFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFA-KSCVLVSLNLNGNRLEGPLPPSLVNCRHL 261 (502)
Q Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 261 (502)
+.++++++.++..+.... ..++.|++++|.++.+. +..+. .+++|+.|++++|.+++..+..|..+++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~--------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLR--------AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEEC--------TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccC--------hhhhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence 578999998876443221 23889999888776433 34455 77889999999999998888889999999
Q ss_pred cEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHh
Q 037195 262 EVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERIL 341 (502)
Q Consensus 262 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 341 (502)
++|+|++|.+....+..|..+++|++|++++|.+.+..+..+ ..+++|+.|+|++|++++..+..+ . ....+
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~-~-----~~~~l 162 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVELI-K-----DGNKL 162 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSCCGGGT-C---------C
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCeeCHHHh-c-----CcccC
Confidence 999999999988888889999999999999999998877766 668999999999999986444322 1 01347
Q ss_pred cccCeeeccCCcccccchhhhcCCCC--CCEEeCcCCcCC
Q 037195 342 TTFATIDLSSNRFQGEILEVLGKLNS--LKSLNISHNNLT 379 (502)
Q Consensus 342 ~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~ 379 (502)
++|+.|||++|++++..+..+..++. ++.|+|++|.+.
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 89999999999999877788888887 488999999886
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=147.09 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=115.6
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCC-cCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIP-SSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
+.+++++|.++ .+|..++ +.+++|++++|.+++..+ ..|..+++|++|++++|++++..+.+|.++++|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46888888886 5787665 457899999999886644 447889999999999999987777789999999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccE
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMRE 160 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 160 (502)
+|.+++..+..+..+ ++|++|++++|.++++.+..+.. +++|+.
T Consensus 90 ~N~l~~~~~~~~~~l------------------~~L~~L~Ls~N~l~~~~~~~~~~------------------l~~L~~ 133 (220)
T 2v70_A 90 SNRLENVQHKMFKGL------------------ESLKTLMLRSNRITCVGNDSFIG------------------LSSVRL 133 (220)
T ss_dssp SSCCCCCCGGGGTTC------------------SSCCEEECTTSCCCCBCTTSSTT------------------CTTCSE
T ss_pred CCccCccCHhHhcCC------------------cCCCEEECCCCcCCeECHhHcCC------------------CccCCE
Confidence 999885555556655 77778888877777665432211 345666
Q ss_pred EEccCCcCcccCCccccCCCCCCEEECCCCcCccc
Q 037195 161 FSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQ 195 (502)
Q Consensus 161 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 195 (502)
|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 66777777766677788888888888888877643
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.3e-17 Score=146.80 Aligned_cols=151 Identities=24% Similarity=0.319 Sum_probs=103.3
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+.++++++.++ .+|..++ ++|+.|++++|.+++..+..|..+++|++|+|++|++.+..|.+|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45677777775 5676554 5788888888888766666788888888888888888877777888888888888888
Q ss_pred CcCcccCChh-hhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCCCccE
Q 037195 82 NQLIGSIPSS-IFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPPHMRE 160 (502)
Q Consensus 82 n~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 160 (502)
|+++ .+|.. +..+ ++|++|++++|.++++.+..+. .+++|+.
T Consensus 90 N~l~-~l~~~~f~~l------------------~~L~~L~L~~N~l~~~~~~~~~------------------~l~~L~~ 132 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGL------------------FSLQLLLLNANKINCLRVDAFQ------------------DLHNLNL 132 (220)
T ss_dssp SCCC-CCCTTTTTTC------------------TTCCEEECCSSCCCCCCTTTTT------------------TCTTCCE
T ss_pred CcCC-ccCHhHccCC------------------CCCCEEECCCCCCCEeCHHHcC------------------CCCCCCE
Confidence 8877 45544 3444 6667777777666655442221 1345566
Q ss_pred EEccCCcCcccCCccccCCCCCCEEECCCCcCc
Q 037195 161 FSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLS 193 (502)
Q Consensus 161 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 193 (502)
|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666666666555556667777777777777664
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.3e-17 Score=154.54 Aligned_cols=152 Identities=27% Similarity=0.370 Sum_probs=119.2
Q ss_pred hhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCC
Q 037195 231 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPK 310 (502)
Q Consensus 231 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 310 (502)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.. .+ ..+++
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~~--~l--~~l~~ 135 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN--GL--VHLPQ 135 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCCG--GG--GGCTT
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCCh--hh--cCCCC
Confidence 4556778888888888875443 77888888888888888653 33788888888888888887642 22 45788
Q ss_pred ccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCC
Q 037195 311 LRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT 390 (502)
Q Consensus 311 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 390 (502)
|+.|++++|++++. + . +..+++|++|++++|++++..+ +..+++|+.|++++|++++ ++ .+..++
T Consensus 136 L~~L~l~~n~l~~~-~-~---------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~ 200 (291)
T 1h6t_A 136 LESLYLGNNKITDI-T-V---------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLK 200 (291)
T ss_dssp CCEEECCSSCCCCC-G-G---------GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCT
T ss_pred CCEEEccCCcCCcc-h-h---------hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCC
Confidence 89999998888764 2 1 2448899999999999987655 8889999999999999984 45 488899
Q ss_pred CCCEEeCCCCCCCcc
Q 037195 391 ELESLDLSSNKLAGR 405 (502)
Q Consensus 391 ~L~~L~ls~n~l~~~ 405 (502)
+|+.|++++|+++..
T Consensus 201 ~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 201 NLDVLELFSQECLNK 215 (291)
T ss_dssp TCSEEEEEEEEEECC
T ss_pred CCCEEECcCCcccCC
Confidence 999999999998753
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.2e-17 Score=145.39 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=123.9
Q ss_pred hcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCc
Q 037195 232 AKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKL 311 (502)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L 311 (502)
..++.|++|++++|.+. .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+ ..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCCC
Confidence 45677999999999988 445 58888999999999997643 3468889999999999999987666665 568999
Q ss_pred cEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCc-ccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCC
Q 037195 312 RIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNR-FQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT 390 (502)
Q Consensus 312 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 390 (502)
++|++++|.+++..+..+ ..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l---------~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~ 181 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKI---------NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFP 181 (197)
T ss_dssp CEEECCSSBCBGGGHHHH---------TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCS
T ss_pred CEEEecCCccCcHhHHHH---------hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCC
Confidence 999999999987655544 448999999999998 55 455 68889999999999999985 44 788899
Q ss_pred CCCEEeCCCCCCCc
Q 037195 391 ELESLDLSSNKLAG 404 (502)
Q Consensus 391 ~L~~L~ls~n~l~~ 404 (502)
+|++|++++|++.+
T Consensus 182 ~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 182 KLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEEECBC----
T ss_pred CCCEEEeeCcccCC
Confidence 99999999999864
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.5e-17 Score=167.20 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=107.1
Q ss_pred CcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeeccccc
Q 037195 26 LAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISVA 105 (502)
Q Consensus 26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~~ 105 (502)
+..+.+..+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+ ++. +..+
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l---------- 86 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNL---------- 86 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGC----------
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccC----------
Confidence 4445555555553322 4566777777777777763 33 46777777777777777763 333 4444
Q ss_pred hhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCCCCCE
Q 037195 106 AWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLSYIRF 184 (502)
Q Consensus 106 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 184 (502)
++|++|+|++|.+++++. ..+ ++|+.|++++|.+.+. ..+..+++|+.
T Consensus 87 --------~~L~~L~Ls~N~l~~l~~l~~l---------------------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 135 (605)
T 1m9s_A 87 --------KNLGWLFLDENKIKDLSSLKDL---------------------KKLKSLSLEHNGISDI--NGLVHLPQLES 135 (605)
T ss_dssp --------TTCCEEECCSSCCCCCTTSTTC---------------------TTCCEEECTTSCCCCC--GGGGGCTTCSE
T ss_pred --------CCCCEEECcCCCCCCChhhccC---------------------CCCCEEEecCCCCCCC--ccccCCCccCE
Confidence 666666666666554332 122 3333334444443321 23555556666
Q ss_pred EECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEE
Q 037195 185 FDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVI 264 (502)
Q Consensus 185 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (502)
|++++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|
T Consensus 136 L~Ls~N~l~~l---------------------------------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 136 LYLGNNKITDI---------------------------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp EECCSSCCCCC---------------------------------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EECCCCccCCc---------------------------------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 66666555432 123445556666666666664443 6666667777
Q ss_pred EccCCccCccCCcccCCCCCCCEEEccCCcCccc
Q 037195 265 DVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGP 298 (502)
Q Consensus 265 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 298 (502)
+|++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 181 ~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7777666553 2466666777777777766543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.8e-16 Score=142.97 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=128.1
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPE 284 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 284 (502)
.+.++.+++.++.+ |..+ .++|++|++++|.+++..|..+..+++|++|++++|.+....+..|..+++
T Consensus 21 ~~~v~c~~~~l~~i---------p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASV---------PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTTSCCSSC---------CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEeEccCCCcCcc---------CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 44566655555533 3222 267999999999999888888999999999999999998777778899999
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC
Q 037195 285 LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK 364 (502)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 364 (502)
|++|++++|.+++..+..+ ..+++|++|++++|+++ .+|..+ ..+++|+.|+|++|++++..+..+..
T Consensus 90 L~~L~Ls~N~l~~l~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVF--DRLVHLKELFMCCNKLT-ELPRGI---------ERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-SCCTTG---------GGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cCEEECCCCcCCccChhHh--CcchhhCeEeccCCccc-ccCccc---------ccCCCCCEEECCCCcCCccCHHHHhC
Confidence 9999999999998776665 56899999999999998 555544 34899999999999999888888999
Q ss_pred CCCCCEEeCcCCcCCCCC
Q 037195 365 LNSLKSLNISHNNLTGGI 382 (502)
Q Consensus 365 l~~L~~L~L~~N~l~~~~ 382 (502)
+++|+.|++++|.+....
T Consensus 158 l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTCCEEECTTSCBCTTB
T ss_pred CCCCCEEEeeCCCccCCc
Confidence 999999999999998543
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.3e-16 Score=149.47 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=120.3
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.+++|+.|++++|.+.. ++ .+..+++|++|++++|++.+..+ +..+++|++|++++|.++ .+|. +..+
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l------ 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDL------ 111 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GTTC------
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hccC------
Confidence 56778888888887763 33 47778888888888888875433 778888888888888776 3332 4444
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCcCCccCC-CCCCCccEEEccCCcCcccCCccccCC
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNLLQGSLL-NLPPHMREFSISRNNLTGEIPSSFCNL 179 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l 179 (502)
++|++|++++|.++++.. ..+++|++|++++|.+++... ..+++|+.|++++|.+++..+ +..+
T Consensus 112 ------------~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 112 ------------KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp ------------TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred ------------CCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCC
Confidence 778888888888777654 356788888888887776521 127788888888888886544 7788
Q ss_pred CCCCEEECCCCcCcccccccccccc-ccEEEccCCccCC
Q 037195 180 SYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQD 217 (502)
Q Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~ 217 (502)
++|+.|++++|.+++.. . +.... |+.|++++|.+..
T Consensus 178 ~~L~~L~L~~N~i~~l~-~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLR-A-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCCEEECCSSCCCBCG-G-GTTCTTCSEEEEEEEEEEC
T ss_pred CccCEEECCCCcCCCCh-h-hccCCCCCEEECcCCcccC
Confidence 88888888888887642 2 44444 8888888777654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.4e-17 Score=150.95 Aligned_cols=152 Identities=20% Similarity=0.310 Sum_probs=124.1
Q ss_pred chhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 037195 230 TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFP 309 (502)
Q Consensus 230 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 309 (502)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+. . . +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~-~---~-~ 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI-P---S-A 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC-C---C-S
T ss_pred chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc-c---c-C
Confidence 35567788999999998874 44 57888999999999999877655 88899999999999998875332 1 2 7
Q ss_pred CccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCC
Q 037195 310 KLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 389 (502)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 389 (502)
+|+.|++++|++++. +. +..+++|+.|++++|++++. + .++.+++|+.|++++|++++. ..+..+
T Consensus 107 ~L~~L~L~~N~l~~~-~~----------l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l 171 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT-DS----------LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRL 171 (263)
T ss_dssp SCCEEECCSSCCSBS-GG----------GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTC
T ss_pred cccEEEccCCccCCC-hh----------hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccC
Confidence 899999999998864 21 23488999999999999875 3 688899999999999999865 678899
Q ss_pred CCCCEEeCCCCCCCcc
Q 037195 390 TELESLDLSSNKLAGR 405 (502)
Q Consensus 390 ~~L~~L~ls~n~l~~~ 405 (502)
++|+.|++++|++.+.
T Consensus 172 ~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCEEEEEEEEEECC
T ss_pred CCCCEEeCCCCcccCC
Confidence 9999999999999865
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.1e-16 Score=164.45 Aligned_cols=148 Identities=28% Similarity=0.378 Sum_probs=66.3
Q ss_pred CCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccE
Q 037195 234 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRI 313 (502)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 313 (502)
+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+.. . ...+++|+.
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~--~--l~~l~~L~~ 135 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN--G--LVHLPQLES 135 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCCG--G--GGGCTTCSE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCCc--c--ccCCCccCE
Confidence 3444444444444443222 44444444444444444331 13444444444444444444321 1 123444555
Q ss_pred EEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCC
Q 037195 314 IDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELE 393 (502)
Q Consensus 314 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 393 (502)
|+|++|.+.+. + . +..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ +| .+..+++|+
T Consensus 136 L~Ls~N~l~~l-~-~---------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 136 LYLGNNKITDI-T-V---------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp EECCSSCCCCC-G-G---------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred EECCCCccCCc-h-h---------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 55555544432 1 0 1224455555555555554433 4455555555555555543 22 344555555
Q ss_pred EEeCCCCCCCc
Q 037195 394 SLDLSSNKLAG 404 (502)
Q Consensus 394 ~L~ls~n~l~~ 404 (502)
.|++++|++.+
T Consensus 201 ~L~L~~N~l~~ 211 (605)
T 1m9s_A 201 VLELFSQECLN 211 (605)
T ss_dssp EEECCSEEEEC
T ss_pred EEEccCCcCcC
Confidence 55555555543
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.8e-16 Score=139.53 Aligned_cols=149 Identities=11% Similarity=0.193 Sum_probs=93.2
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------ 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGL------ 111 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC------
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCC------
Confidence 4556666666666665 444 4666666666666666554 22356666666666666666665555555554
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCc-CCccCC-CCCCCccEEEccCCcCcccCCccc
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNL-LQGSLL-NLPPHMREFSISRNNLTGEIPSSF 176 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l 176 (502)
++|++|++++|.+++..+ ..+++|++|++++|. +..... ..+++|+.|++++|.+++. + .+
T Consensus 112 ------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~-~-~l 177 (197)
T 4ezg_A 112 ------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-R-GI 177 (197)
T ss_dssp ------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC-T-TG
T ss_pred ------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh-H-Hh
Confidence 666666666666665322 355667777777766 443221 1267788888888888753 3 67
Q ss_pred cCCCCCCEEECCCCcCcc
Q 037195 177 CNLSYIRFFDSSNNSLSG 194 (502)
Q Consensus 177 ~~l~~L~~L~l~~n~l~~ 194 (502)
..+++|+.|++++|++.+
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 788899999999988753
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1e-19 Score=185.78 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=37.7
Q ss_pred ccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccC-CcccCCCCCCCEEEccCCcCcccC
Q 037195 228 PQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTF-PHWLDVLPELQVLTLRSNRFRGPI 299 (502)
Q Consensus 228 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~ 299 (502)
|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 3444455555555555555553 33 4555555555555555555544 555555555555555555555443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3.8e-16 Score=133.75 Aligned_cols=136 Identities=25% Similarity=0.290 Sum_probs=105.1
Q ss_pred CCCcEEEccCCccC-ccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhH
Q 037195 259 RHLEVIDVGNNQIN-DTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQM 337 (502)
Q Consensus 259 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 337 (502)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+.+.+|..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~~~-------- 91 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDMLA-------- 91 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCCCHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHHHHHH--------
Confidence 56777777777775 45666667777788888888877755 223 557888888888888887666543
Q ss_pred HHHhcccCeeeccCCcccccc-hhhhcCCCCCCEEeCcCCcCCCCCc---hhccCCCCCCEEeCCCCCCCccCch
Q 037195 338 ERILTTFATIDLSSNRFQGEI-LEVLGKLNSLKSLNISHNNLTGGIP---SSLRNLTELESLDLSSNKLAGRIPT 408 (502)
Q Consensus 338 ~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~n~l~~~~p~ 408 (502)
..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 92 -~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 92 -EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp -HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred -hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 44889999999999998753 3778899999999999999996555 48889999999999999987 4444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.3e-16 Score=147.09 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=68.3
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.+++|++|++++|.++ .++ .+..+++|++|++++|++.+..+ +..+++|++|++++|+++ .+|...
T Consensus 39 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~--------- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIP--------- 104 (263)
T ss_dssp HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCC---------
T ss_pred hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCccc---------
Confidence 4455555555555554 233 34555555555555555553222 555555555555555544 222110
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccCC-CCCCCCceEeCcCCcCCccCCCCCCCccEEEccCCcCcccCCccccCCC
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNIDH-LPWKNLEYLHLDSNLLQGSLLNLPPHMREFSISRNNLTGEIPSSFCNLS 180 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 180 (502)
. ++|++|++++|.+++.+. .. +++|+.|++++|.+++. ..+..++
T Consensus 105 ----------~-~~L~~L~L~~N~l~~~~~l~~---------------------l~~L~~L~Ls~N~i~~~--~~l~~l~ 150 (263)
T 1xeu_A 105 ----------S-ACLSRLFLDNNELRDTDSLIH---------------------LKNLEILSIRNNKLKSI--VMLGFLS 150 (263)
T ss_dssp ----------C-SSCCEEECCSSCCSBSGGGTT---------------------CTTCCEEECTTSCCCBC--GGGGGCT
T ss_pred ----------c-CcccEEEccCCccCCChhhcC---------------------cccccEEECCCCcCCCC--hHHccCC
Confidence 0 344455555554444432 23 44555555555555432 1345555
Q ss_pred CCCEEECCCCcCcccccccccccc-ccEEEccCCccC
Q 037195 181 YIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQ 216 (502)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~ 216 (502)
+|+.|++++|.+++. ..+.... |+.|++++|.+.
T Consensus 151 ~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 555555555555544 2222222 555555555443
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=4.3e-16 Score=136.40 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=81.0
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCc-ccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPH-WLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
+.++++++.++ .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+ .
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~---------- 75 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--E---------- 75 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--T----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--C----------
Confidence 45555555554 3333222 2555555555555444432 24555555555555555554444333 2
Q ss_pred cCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 037195 317 SYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396 (502)
Q Consensus 317 ~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 396 (502)
.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|++|+
T Consensus 76 -----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 76 -----------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp -----------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred -----------------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 255666666666666666666677778888888888888877777788888888888
Q ss_pred CCCCCCCccCc
Q 037195 397 LSSNKLAGRIP 407 (502)
Q Consensus 397 ls~n~l~~~~p 407 (502)
+++|++.+..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 88888876655
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=7.4e-16 Score=134.87 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=92.1
Q ss_pred CEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCC
Q 037195 286 QVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKL 365 (502)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 365 (502)
+.+++++|.++.. |... .++|++|++++|++.+..+..+ +..+++|++|+|++|++++..|..|..+
T Consensus 11 ~~l~~s~~~l~~i-p~~~----~~~l~~L~l~~n~i~~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDI----PLHTTELLLNDNELGRISSDGL--------FGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSC-CSCC----CTTCSEEECCSCCCCSBCCSCS--------GGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcC-ccCC----CCCCCEEECCCCcCCccCCccc--------cccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 4555555555432 2221 2366666666666665444311 1348889999999999998889999999
Q ss_pred CCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhcccCCCCCc
Q 037195 366 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 418 (502)
Q Consensus 366 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 418 (502)
++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+..++.|+.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 99999999999999888888999999999999999999999998888776654
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1e-16 Score=168.70 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=95.6
Q ss_pred ccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 037195 228 PQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVP 307 (502)
Q Consensus 228 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 307 (502)
|..+..++.|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++. +|..+ ..
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~--~~ 314 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEF--GN 314 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSST--TS
T ss_pred ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhh--hc
Confidence 344456778888899999888 77888888999999999999987 668888889999999999998874 44444 66
Q ss_pred CCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCC--------cCC
Q 037195 308 FPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHN--------NLT 379 (502)
Q Consensus 308 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--------~l~ 379 (502)
+++|+.|+|++|.+++.+|..+.. ....+..++|++|.+++.+|. .|+.|++++| .+.
T Consensus 315 l~~L~~L~L~~N~l~~~~p~~~~~--------~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~ 380 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLKILTE--------KSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQ 380 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHHHHHH--------HHHHHHHHHHHHCCCCCCCCC------C--------------------
T ss_pred CCCccEEeCCCCccCCCChHHHhh--------cchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcc
Confidence 889999999999999887765421 011223478999999887775 4566677766 344
Q ss_pred CCCchhccCCCCCCEEeCCCCCCC
Q 037195 380 GGIPSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 380 ~~~p~~l~~l~~L~~L~ls~n~l~ 403 (502)
+..+..+..+..+....+++|-+.
T Consensus 381 ~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 381 QSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------CCC
T ss_pred ccccchhhcccccceeeeeccccc
Confidence 444445566777778888888875
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=1.1e-15 Score=128.07 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=94.4
Q ss_pred CCCcEEEccCCccC-ccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhH
Q 037195 259 RHLEVIDVGNNQIN-DTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQM 337 (502)
Q Consensus 259 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 337 (502)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~~~-------- 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEVLA-------- 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCSCTHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccchHHHHh--------
Confidence 45677777777765 45666667777777777777777655 222 457788888888888876655433
Q ss_pred HHHhcccCeeeccCCccccc-chhhhcCCCCCCEEeCcCCcCCCCCc---hhccCCCCCCEEeCCC
Q 037195 338 ERILTTFATIDLSSNRFQGE-ILEVLGKLNSLKSLNISHNNLTGGIP---SSLRNLTELESLDLSS 399 (502)
Q Consensus 338 ~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~ 399 (502)
..+++|++|++++|++++. .+..++.+++|+.|++++|.+++..+ ..+..+++|++||+++
T Consensus 85 -~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 -EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 3478899999999988864 34778889999999999999986655 5788889999998863
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=4.6e-18 Score=173.48 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=74.6
Q ss_pred CCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHH
Q 037195 260 HLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMER 339 (502)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 339 (502)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+ ..+++|+.|+|++|++++ +| .+ .
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~Ls~N~l~~-lp-~l---------~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL--AALRCLEVLQASDNALEN-VD-GV---------A 505 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG--GGCTTCCEEECCSSCCCC-CG-GG---------T
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh--hcCCCCCEEECCCCCCCC-Cc-cc---------C
Confidence 48888999988876 455 888888999999988887 344433 446666666666666654 23 21 2
Q ss_pred HhcccCeeeccCCcccccc-hhhhcCCCCCCEEeCcCCcCCCCCch---hccCCCCCCEEe
Q 037195 340 ILTTFATIDLSSNRFQGEI-LEVLGKLNSLKSLNISHNNLTGGIPS---SLRNLTELESLD 396 (502)
Q Consensus 340 ~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~ 396 (502)
.+++|+.|+|++|++++.. |..++.+++|+.|+|++|.+++..|. .+..+++|+.||
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 2555666666666665554 55566666666666666666543332 122355555554
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=3.4e-16 Score=164.74 Aligned_cols=160 Identities=24% Similarity=0.211 Sum_probs=89.6
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEE-----ccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCE
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLD-----LSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSY 76 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~-----L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 76 (502)
+.|+|.+|.+.. ++..+. ....|+.+. ++.|.+. ..+..|..++.|++|+|++|.+. .+|..+..+++|++
T Consensus 176 ~~l~L~~n~~~~-~~~~~l-~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 176 PKIELFANGKDE-ANQALL-QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred ceEEeeCCCCCc-chhhHh-hcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 456777777654 343333 223333322 2233333 45777899999999999999998 67777789999999
Q ss_pred EEcccCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCCCCCCCceEeCcCCcCCccCCCCCC
Q 037195 77 LGLGGNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHLPWKNLEYLHLDSNLLQGSLLNLPP 156 (502)
Q Consensus 77 L~L~~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 156 (502)
|+|++|.++ .+|..++.+ ++|++|+|++|.++.++.. +. .++
T Consensus 252 L~Ls~N~l~-~lp~~~~~l------------------~~L~~L~Ls~N~l~~lp~~-~~------------------~l~ 293 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNL------------------SNLRVLDLSHNRLTSLPAE-LG------------------SCF 293 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGG------------------TTCCEEECTTSCCSSCCSS-GG------------------GGT
T ss_pred EEeeCCcCc-ccChhhhCC------------------CCCCEEeCcCCcCCccChh-hc------------------CCC
Confidence 999999998 889888877 8888888888887755331 11 124
Q ss_pred CccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc
Q 037195 157 HMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST 204 (502)
Q Consensus 157 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (502)
+|++|+|++|.++ .+|..|..+++|+.|++++|.+++.++..+....
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 340 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS 340 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc
Confidence 5555556666655 5566677778888888888888777766665433
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2e-15 Score=129.13 Aligned_cols=138 Identities=22% Similarity=0.235 Sum_probs=107.0
Q ss_pred CCCccEEeccCCccc-cCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCcc
Q 037195 234 SCVLVSLNLNGNRLE-GPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312 (502)
Q Consensus 234 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 312 (502)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.++..+ ..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA--EKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH--HHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH--hhCCCCC
Confidence 356888888888887 56777778888888888888888765 667888888888888888887555443 3478888
Q ss_pred EEEccCccCCCCCc-hhhhcCCchhHHHHhcccCeeeccCCcccccch---hhhcCCCCCCEEeCcCCcCCCCCchh
Q 037195 313 IIDLSYNRFTGVLP-IWYLHGNDIQMERILTTFATIDLSSNRFQGEIL---EVLGKLNSLKSLNISHNNLTGGIPSS 385 (502)
Q Consensus 313 ~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~ 385 (502)
+|++++|.+++... ..+ ..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|.+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPL---------KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EEECBSSSCCSSGGGGGG---------SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EEeccCCccCcchhHHHH---------hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 88888888876432 222 347899999999999987665 57889999999999999987 55543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=1.6e-15 Score=144.95 Aligned_cols=102 Identities=15% Similarity=0.059 Sum_probs=57.8
Q ss_pred CCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccC-eeeccCCcccccchh
Q 037195 282 LPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFA-TIDLSSNRFQGEILE 360 (502)
Q Consensus 282 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~ 360 (502)
+++|+.+++++|.++......+ ..+++|+.+++.+| +....+..| ..+++|+ .+++.+ .++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~n-i~~I~~~aF---------~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHN-LKTIGQRVF---------SNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTT-CCEECTTTT---------TTCTTCCEEEEECT-TCCEECTT
T ss_pred cCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcc-cceehHHHh---------hCChhccEEEEEcc-cceEEchh
Confidence 4555555555555554444444 34555555555544 332211111 2255565 666655 45545556
Q ss_pred hhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 037195 361 VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396 (502)
Q Consensus 361 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 396 (502)
+|.+|++|+.+++++|.++...+.+|.++++|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 677777777777777777755556777777777765
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.7e-14 Score=124.55 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=90.0
Q ss_pred ccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 237 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
.+.++++++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------- 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF------------- 72 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-------------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc-------------
Confidence 4566666666653 33222 2456666666666655555555555666666666665554333222
Q ss_pred cCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 037195 317 SYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 396 (502)
Q Consensus 317 ~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 396 (502)
..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 73 ----------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 73 ----------------------DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp ----------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------------cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 2266777777777777766677788899999999999999966666678899999999
Q ss_pred CCCCCCCccCc
Q 037195 397 LSSNKLAGRIP 407 (502)
Q Consensus 397 ls~n~l~~~~p 407 (502)
+++|++.+..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 99999997665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.9e-14 Score=125.78 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=89.6
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEcc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLS 317 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~ 317 (502)
+.++++++.++ .+|..+ .+++++|++++|.+. .+|..|..+++|++|++++|.+++..+..+ .
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f--~----------- 75 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF--S----------- 75 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT--T-----------
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc--c-----------
Confidence 45666666665 334332 246677777777664 344566666666666666666665544433 2
Q ss_pred CccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeC
Q 037195 318 YNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 397 (502)
Q Consensus 318 ~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 397 (502)
.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 76 ----------------------~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 76 ----------------------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ----------------------TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ----------------------CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 2566666777777777677777888999999999999998666667888999999999
Q ss_pred CCCCCCcc
Q 037195 398 SSNKLAGR 405 (502)
Q Consensus 398 s~n~l~~~ 405 (502)
++|++.+.
T Consensus 134 ~~N~~~C~ 141 (193)
T 2wfh_A 134 GANPLYCD 141 (193)
T ss_dssp CSSCEECS
T ss_pred CCCCeecC
Confidence 99998754
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=126.08 Aligned_cols=122 Identities=26% Similarity=0.295 Sum_probs=93.6
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
++++++++.++ .+|..++ ++|+.|++++|.++ .+|..|.++++|++|++++|.+++..+.+|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46788888876 6777654 58899999999887 6778888999999999999999877778899999999999999
Q ss_pred CcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCCC---CCCCCceEeCcCCc
Q 037195 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDHL---PWKNLEYLHLDSNL 146 (502)
Q Consensus 82 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~ 146 (502)
|++++..|..+..+ ++|++|++++|.++.++.. .+++|+.|++++|.
T Consensus 88 N~l~~i~~~~f~~l------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGL------------------KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTC------------------TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCC------------------CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99886555666665 7888888888888776653 23344444444443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.8e-15 Score=124.05 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCCcEEEccCCccc-ccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeec
Q 037195 23 ITQLAYLDLSFNSFS-GHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFA 101 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~ 101 (502)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+++.+|..+..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------ 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC------ 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC------
Confidence 355666666666665 45566666666666666666666643 556666666666666666664455555444
Q ss_pred cccchhhhhhccCcccEEECCCCcCcccC--C--CCCCCCceEeCcCCcCCccCC---CC---CCCccEEEcc
Q 037195 102 ISVAAWMWDIGVHTLIYLELSRNFLTNID--H--LPWKNLEYLHLDSNLLQGSLL---NL---PPHMREFSIS 164 (502)
Q Consensus 102 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~--~~~~~L~~L~l~~n~l~~~~~---~~---~~~L~~L~l~ 164 (502)
++|++|++++|.+++.+ . ..+++|++|++++|.+++..+ .. +++|+.|+++
T Consensus 88 ------------~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 ------------PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ------------TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ------------CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666666666642 1 345667777777776665543 11 5667776654
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=4.1e-15 Score=141.99 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=70.7
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCc-EEEccCCccCccCCcccCCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLE-VIDVGNNQINDTFPHWLDVLP 283 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~ 283 (502)
|+.+++++|.++.++ +..|..+.+|+.+++.+| +..+.+.+|..|++|+ .+++.+ .+....+..|.+++
T Consensus 228 L~~l~L~~n~i~~I~--------~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 228 LVSLDISKTNATTIP--------DFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp CCEEECTTBCCCEEC--------TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred CeEEECCCCCcceec--------HhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence 666666655554332 235666777888888776 6656667788888888 888877 66666677788888
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCCccEEEc
Q 037195 284 ELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDL 316 (502)
Q Consensus 284 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L 316 (502)
+|+.+++++|.+.......| ..+++|+.++.
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF--~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELF--GNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECSSCCCEECTTTT--CTTCCCCEEEC
T ss_pred cCCEEEeCCCccCccchhhh--cCCcchhhhcc
Confidence 88888888888776666666 56777777653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=6.3e-14 Score=120.90 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=99.3
Q ss_pred ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCC
Q 037195 205 LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPE 284 (502)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 284 (502)
.+.++++++.++.++ ..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 9 ~~~l~~~~~~l~~~p---------~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP---------TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCC---------TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCC---------CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 678888888777543 222 257999999999999877777899999999999999998887788899999
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcC
Q 037195 285 LQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGK 364 (502)
Q Consensus 285 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 364 (502)
|++|++++|.+++..+..+ ..+++|++|++++| ++++..+..+..
T Consensus 78 L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N---------------------------------~l~~~~~~~~~~ 122 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVF--DKLTQLKELALDTN---------------------------------QLKSVPDGIFDR 122 (177)
T ss_dssp CCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS---------------------------------CCSCCCTTTTTT
T ss_pred cCEEECCCCCccccCHHHh--hCCcccCEEECcCC---------------------------------cceEeCHHHhcC
Confidence 9999999999987665544 33445555555554 444444444566
Q ss_pred CCCCCEEeCcCCcCCCCCc
Q 037195 365 LNSLKSLNISHNNLTGGIP 383 (502)
Q Consensus 365 l~~L~~L~L~~N~l~~~~p 383 (502)
+++|+.|++++|.+++..|
T Consensus 123 l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCeeccCc
Confidence 7777777777777765443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=3.7e-14 Score=122.24 Aligned_cols=134 Identities=19% Similarity=0.209 Sum_probs=92.9
Q ss_pred ccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCc
Q 037195 255 LVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGND 334 (502)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 334 (502)
+..+++|+.|++++|.+... +......++|++|++++|.+++. ..+ ..+++|++|++++|.+++..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~~~~~~~~----- 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRICRIGEGLD----- 84 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCCEECSCHH-----
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCcccccCcchh-----
Confidence 44556666666666666533 33222233777777777777654 222 456777777777777775433322
Q ss_pred hhHHHHhcccCeeeccCCcccccchh--hhcCCCCCCEEeCcCCcCCCCCchh----ccCCCCCCEEeCCCCCCCc
Q 037195 335 IQMERILTTFATIDLSSNRFQGEILE--VLGKLNSLKSLNISHNNLTGGIPSS----LRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 335 ~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~ls~n~l~~ 404 (502)
..+++|++|++++|+++. +|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|.+..
T Consensus 85 ----~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 85 ----QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ----HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ----hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 447888888888888864 444 7888999999999999998 55664 8889999999999998763
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=6.4e-16 Score=136.10 Aligned_cols=155 Identities=20% Similarity=0.305 Sum_probs=107.3
Q ss_pred hhcCCCccEEeccCCccccCCCc------cccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCC
Q 037195 231 FAKSCVLVSLNLNGNRLEGPLPP------SLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKT 304 (502)
Q Consensus 231 ~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 304 (502)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++.. +..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~- 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLD- 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchh-
Confidence 33445566666666666665554 67778888888888888866 44 677788888888888887743 3222
Q ss_pred CCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccch-hhhcCCCCCCEEeCcCCcCCCCCc
Q 037195 305 RVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEIL-EVLGKLNSLKSLNISHNNLTGGIP 383 (502)
Q Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p 383 (502)
..+++|++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+++.+|
T Consensus 90 -~~~~~L~~L~L~~N~l~~l-~----------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 90 -AVADTLEELWISYNQIASL-S----------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp -HHHHHCSEEEEEEEECCCH-H----------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred -hcCCcCCEEECcCCcCCcC-C----------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 3357788888888887752 2 12457888888888888875433 467788888888888888875544
Q ss_pred h----------hccCCCCCCEEeCCCCCCC
Q 037195 384 S----------SLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 384 ~----------~l~~l~~L~~L~ls~n~l~ 403 (502)
. .+..+++|+.|| +|.++
T Consensus 158 ~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 158 ENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3 266778888876 56555
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1e-11 Score=121.05 Aligned_cols=65 Identities=6% Similarity=-0.004 Sum_probs=31.5
Q ss_pred chhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcc
Q 037195 230 TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRG 297 (502)
Q Consensus 230 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 297 (502)
.|..|.+|+.+.+.+ .+..+...+|..|++|+.+.+..+ +.......|.++ +|+.+++.+|....
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 344455555555552 244344444555555555555333 333344445555 55555555554443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.2e-13 Score=117.27 Aligned_cols=125 Identities=23% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCC-CCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCcccCChhh-hcccCCe
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQ-QLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSI-FELLNLT 99 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~ 99 (502)
++++|+.|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|..+ ..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l---- 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL---- 87 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC----
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC----
Confidence 4566666666666666 3333 33433 666666666666643 45666666666666666666 333322 444
Q ss_pred eccccchhhhhhccCcccEEECCCCcCcccCC----CCCCCCceEeCcCCcCCccCCC------CCCCccEEEccCCcCc
Q 037195 100 FAISVAAWMWDIGVHTLIYLELSRNFLTNIDH----LPWKNLEYLHLDSNLLQGSLLN------LPPHMREFSISRNNLT 169 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~n~l~ 169 (502)
++|++|++++|.++.++. ..+++|+.|++++|.+...... .+++|+.|++++|...
T Consensus 88 --------------~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 --------------PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp --------------TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred --------------CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666666655443 2456667777777766543321 1677777777777654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=4.6e-13 Score=114.46 Aligned_cols=106 Identities=28% Similarity=0.279 Sum_probs=90.5
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+++++++|.++ .+|..++ ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 68999999987 5887664 7899999999999988888999999999999999999987777889999999999999
Q ss_pred CcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCccc
Q 037195 82 NQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 82 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
|++++..+..+..+ ++|++|++++|.++..
T Consensus 88 N~l~~~~~~~~~~l------------------~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNL------------------KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTC------------------TTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCC------------------CCCCEEEeCCCCCCCC
Confidence 99995444456665 7888888888876643
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=8.2e-12 Score=121.76 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=66.1
Q ss_pred ccEEEccCCcCcccCCccccCCCCCCEEECCCCcCccccccccccccccEEEccCCccCCCCCCeeeccCccchhcCCCc
Q 037195 158 MREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNSTLDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVL 237 (502)
Q Consensus 158 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L 237 (502)
|+.+.+.+ .++......|.++++|+.++++.|.++......+....|+.+.+..+ ++.+ -...|..+.+|
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I--------~~~aF~~~~~L 228 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEI--------GSQAFLKTSQL 228 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEE--------CTTTTTTCTTC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hhee--------hhhHhhCCCCC
Confidence 34444433 33333445566666666666666666555444444333555555321 2211 12345556666
Q ss_pred cEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCc
Q 037195 238 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFR 296 (502)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 296 (502)
+.+++..+ ++.+...+|.. .+|+.+.+. +.+.......|.++++|+.+++.+|.+.
T Consensus 229 ~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 229 KTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred CEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 66666653 33344445555 566666663 3344445556666666666666665543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=112.43 Aligned_cols=105 Identities=30% Similarity=0.335 Sum_probs=86.1
Q ss_pred CEEEecCCCCcccCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 2 TLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 2 ~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
+.+++++|.+. .+|..++ ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 47889999884 7887665 7899999999999988788899999999999999999976666788999999999999
Q ss_pred CcCcccCCh-hhhcccCCeeccccchhhhhhccCcccEEECCCCcCccc
Q 037195 82 NQLIGSIPS-SIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 82 n~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
|+++ .+|. .+..+ ++|++|++++|.+...
T Consensus 91 N~l~-~l~~~~~~~l------------------~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNL------------------KSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCC-CCCTTTTTTC------------------TTCSEEECCSSCBCTT
T ss_pred Cccc-eeCHHHhccc------------------cCCCEEEeCCCCcccc
Confidence 9998 4554 46655 7888888888876643
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.4e-12 Score=111.42 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=77.0
Q ss_pred CEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCC
Q 037195 286 QVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKL 365 (502)
Q Consensus 286 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 365 (502)
+.+++++|.++..+. .. .++|++|++++|++++..|..+ ..+++|++|+|++|++++..+..|..+
T Consensus 12 ~~l~~s~n~l~~ip~-~~----~~~l~~L~L~~N~i~~~~~~~~---------~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-GI----PTTTQVLYLYDNQITKLEPGVF---------DRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TEEECTTSCCSSCCS-CC----CTTCSEEECCSSCCCCCCTTTT---------TTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEeCCCCcCccCc-cC----CCCCcEEEcCCCcCCccChhhh---------cCcccCCEEECCCCCcCccChhhccCC
Confidence 445555555543221 11 2455566666666655544433 237778888888888887777778899
Q ss_pred CCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCc
Q 037195 366 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 366 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 407 (502)
++|+.|+|++|+|++..+..|..+++|++|++++|++.+..+
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999999999997777789999999999999999986543
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=2.1e-11 Score=119.27 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=135.5
Q ss_pred CCCCccEEEccCCcCcccCCccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchh
Q 037195 154 LPPHMREFSISRNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFA 232 (502)
Q Consensus 154 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 232 (502)
.+++|+.+.+.++. .......|.++.+|+.+++..+ ++......+.... |+.+.+..+.. .+.....
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~----------~i~~~~~ 227 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY----------YLGDFAL 227 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC----------EECTTTT
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce----------Eeehhhc
Confidence 35666666665442 2234455666677777766654 3333333343333 55554432211 1112233
Q ss_pred cCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCcc
Q 037195 233 KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLR 312 (502)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 312 (502)
....|+.+.+.... .......+..+..++.+.+..+.. ......|..+..++.+....+.+. ...+ ..+.+|+
T Consensus 228 ~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F--~~~~~L~ 300 (394)
T 4fs7_A 228 SKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTF--YGCSSLT 300 (394)
T ss_dssp TTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTT--TTCTTCC
T ss_pred ccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccc--ccccccc
Confidence 34567777765432 324445677778888888776643 344556777777887777655432 1222 5567788
Q ss_pred EEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 037195 313 IIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 392 (502)
Q Consensus 313 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 392 (502)
.+.+..+ +.......| ..+++|+.+++..+ ++.....+|.++.+|+.+++..+ ++..-..+|.++++|
T Consensus 301 ~i~l~~~-i~~I~~~aF---------~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAF---------ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp EEEECTT-CCEECTTTT---------TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccc-cceechhhh---------cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 8877654 332222222 34788888888654 65555678888999999999776 664556788889999
Q ss_pred CEEeCCCCCCCccCchhcccCCCCC
Q 037195 393 ESLDLSSNKLAGRIPTQLASLNYLS 417 (502)
Q Consensus 393 ~~L~ls~n~l~~~~p~~~~~l~~L~ 417 (502)
+.+++..+ +. .+..+|.+++.|+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCc
Confidence 99988654 22 2345566665554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=4.5e-15 Score=130.65 Aligned_cols=138 Identities=21% Similarity=0.251 Sum_probs=112.1
Q ss_pred ccCCCCCcEEEccCCccCccCCc------ccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchh
Q 037195 255 LVNCRHLEVIDVGNNQINDTFPH------WLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIW 328 (502)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 328 (502)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++. + .+ ..+++|+.|++++|.++. +|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~--~~l~~L~~L~l~~n~l~~-l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SL--SGMENLRILSLGRNLIKK-IENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CH--HHHTTCCEEEEEEEEECS-CSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cc--ccCCCCCEEECCCCCccc-ccch
Confidence 34455677777777777776665 888999999999999999874 3 33 568999999999999984 4533
Q ss_pred hhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCc-hhccCCCCCCEEeCCCCCCCccCc
Q 037195 329 YLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIP-SSLRNLTELESLDLSSNKLAGRIP 407 (502)
Q Consensus 329 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p 407 (502)
+ ..+++|++|++++|++++ +| .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++.+.+|
T Consensus 89 ~---------~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 89 D---------AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp H---------HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred h---------hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 2 447999999999999997 44 68889999999999999984332 478899999999999999988766
Q ss_pred h
Q 037195 408 T 408 (502)
Q Consensus 408 ~ 408 (502)
.
T Consensus 158 ~ 158 (198)
T 1ds9_A 158 E 158 (198)
T ss_dssp T
T ss_pred c
Confidence 5
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.9e-12 Score=108.97 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=65.0
Q ss_pred CCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccC
Q 037195 309 PKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRN 388 (502)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 388 (502)
++|++|++++|++.+..|..+ ..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVF---------DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEeCCCCccccCHHHh---------cCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhcc
Confidence 445555555555554444333 23677777777788777766667788999999999999999666666999
Q ss_pred CCCCCEEeCCCCCCCcc
Q 037195 389 LTELESLDLSSNKLAGR 405 (502)
Q Consensus 389 l~~L~~L~ls~n~l~~~ 405 (502)
+++|++|++++|++...
T Consensus 104 l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 104 LKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCSEEECCSSCBCTT
T ss_pred ccCCCEEEeCCCCcccc
Confidence 99999999999999854
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.36 E-value=4.2e-11 Score=117.15 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=100.1
Q ss_pred ccccCCCCCCEEECCCCcCcccccccccccc-ccEEEccCCccCCCCCCeeeccCccchhcCCCccEEeccCCccccCCC
Q 037195 174 SSFCNLSYIRFFDSSNNSLSGQILQCLGNST-LDTLDLGMNNFQDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP 252 (502)
Q Consensus 174 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 252 (502)
..|.++++|+.+.+.++. .......+..+. |+.+.+..+ ++. .-...|..+..|+.+.+..+... +.
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~--------I~~~~F~~~~~L~~i~~~~~~~~--i~ 223 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKI--------IRDYCFAECILLENMEFPNSLYY--LG 223 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCE--------ECTTTTTTCTTCCBCCCCTTCCE--EC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceE--------eCchhhccccccceeecCCCceE--ee
Confidence 345556666666665432 222223333333 555555322 111 11234445555655555544322 11
Q ss_pred ccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhhhcC
Q 037195 253 PSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHG 332 (502)
Q Consensus 253 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 332 (502)
........|+.+.+... +.......+..+..++.+.+..+... .....+ ..+..++......+.+.. .
T Consensus 224 ~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F--~~~~~l~~~~~~~~~i~~----~---- 291 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLF--YNCSGLKKVIYGSVIVPE----K---- 291 (394)
T ss_dssp TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTT--TTCTTCCEEEECSSEECT----T----
T ss_pred hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccc--ccccccceeccCceeecc----c----
Confidence 22233455666655433 22233344555666666666554322 222222 345555555554433211 0
Q ss_pred CchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCccCchhccc
Q 037195 333 NDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 412 (502)
Q Consensus 333 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~ 412 (502)
.+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..-..+|.++++|+.+++..+ +...-..+|..
T Consensus 292 ----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 292 ----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp ----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred ----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 0122556666666543 33344455666666666666533 44333455666666666666554 44344455666
Q ss_pred CCCCCc
Q 037195 413 LNYLSV 418 (502)
Q Consensus 413 l~~L~~ 418 (502)
+..|+.
T Consensus 365 C~~L~~ 370 (394)
T 4fs7_A 365 CINLKK 370 (394)
T ss_dssp CTTCCE
T ss_pred CCCCCE
Confidence 655554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=2.1e-09 Score=104.98 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=57.7
Q ss_pred CCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCCccEEEccCccCCCCCchhh
Q 037195 250 PLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPKLRIIDLSYNRFTGVLPIWY 329 (502)
Q Consensus 250 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 329 (502)
....+|..+..|+.+.+.++.. ......|.++++|+.+.+.. .++......+ ..+.+|+.+++..+ ++......|
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF--~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVF--AGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTT--TTCTTCCEEECCTT-CCEECTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceee--cCCCCcCEEEeCCc-ccEehHhHh
Confidence 3344566666666666654432 33345556666666666642 2333323333 44555555555432 211111111
Q ss_pred hcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCC
Q 037195 330 LHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 401 (502)
Q Consensus 330 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~ 401 (502)
..+.+|+.+.+..+ ++.....+|.+|++|+.+++.++... -..+....+|+.+.+..|.
T Consensus 331 ---------~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 331 ---------AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ---------TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred ---------hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 22455555555332 33333445555555555555554322 1234444555555554443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.1e-13 Score=133.74 Aligned_cols=171 Identities=19% Similarity=0.148 Sum_probs=87.6
Q ss_pred CccEEeccCCccccCCCccc----c-CCCCCcEEEccCCccCccCCccc-CCCCCCCEEEccCCcCcccCCCCCC---CC
Q 037195 236 VLVSLNLNGNRLEGPLPPSL----V-NCRHLEVIDVGNNQINDTFPHWL-DVLPELQVLTLRSNRFRGPIDDTKT---RV 306 (502)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~---~~ 306 (502)
.|+.|++++|.++......+ . ..++|++|+|++|.+++.....+ ..+++|++|++++|.++......+. ..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 35555555555543222111 1 12456666666665543322222 1234566666666665432111100 01
Q ss_pred CCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCccccc----chhhhcCCCCCCEEeCcCCcCCCC-
Q 037195 307 PFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGE----ILEVLGKLNSLKSLNISHNNLTGG- 381 (502)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~- 381 (502)
..++|+.|+|++|.++......+ .......++|++|||++|.+++. +...+...++|+.|+|++|.+++.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l-----~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVL-----MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHH-----HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred cCCccceeeCCCCCCChHHHHHH-----HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 24566677777666543211111 01123356777777777777653 244556667777777777777642
Q ss_pred ---CchhccCCCCCCEEeCCCCCCCccCchhcc
Q 037195 382 ---IPSSLRNLTELESLDLSSNKLAGRIPTQLA 411 (502)
Q Consensus 382 ---~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 411 (502)
+...+...++|++||+++|.|+..-...+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 233444567777788887777654444443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=5e-11 Score=114.52 Aligned_cols=105 Identities=24% Similarity=0.128 Sum_probs=89.1
Q ss_pred EEEecCC-CCcccCChhhhhCCCCCcEEEccC-CcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcc
Q 037195 3 LRNLSSS-YFMGSIPASLGNDITQLAYLDLSF-NSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLG 80 (502)
Q Consensus 3 ~L~Ls~n-~~~~~ip~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 80 (502)
.++++++ .++ .+|. +. .+++|+.|+|++ |.+.+..+..|.++++|++|+|++|++.+..|.+|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4688887 776 6898 77 899999999996 99997777889999999999999999999899999999999999999
Q ss_pred cCcCcccCChhhhcccCCeeccccchhhhhhccCcccEEECCCCcCccc
Q 037195 81 GNQLIGSIPSSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNI 129 (502)
Q Consensus 81 ~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 129 (502)
+|+++ .+|..++.. ..|+.|++.+|.+...
T Consensus 89 ~N~l~-~~~~~~~~~------------------~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALE-SLSWKTVQG------------------LSLQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCS-CCCSTTTCS------------------CCCCEEECCSSCCCCC
T ss_pred CCccc-eeCHHHccc------------------CCceEEEeeCCCccCC
Confidence 99999 566554443 3388888888877643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=4.8e-12 Score=122.20 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=30.5
Q ss_pred hcccCeeeccCCccccc----chhhhcCCCCCCEEeCcCCcCCCCCchhccCC---C--CCCEEe--CCCCCCC
Q 037195 341 LTTFATIDLSSNRFQGE----ILEVLGKLNSLKSLNISHNNLTGGIPSSLRNL---T--ELESLD--LSSNKLA 403 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~--~L~~L~--ls~n~l~ 403 (502)
.++|++|+|++|.+++. +...+...++|++|+|++|.|++.-...+..+ . .|+.+. +..|.+.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 44566666666666543 22334445667777777776654333333221 1 155665 5556554
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=3.6e-08 Score=96.23 Aligned_cols=315 Identities=12% Similarity=0.124 Sum_probs=195.8
Q ss_pred cCChhhhhCCC-CCcEEEccCCcccccCCcCCCCCCCCCEEeccCCc---CCccCCcccCCCCCCCEEEcccCcCcccCC
Q 037195 14 SIPASLGNDIT-QLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNN---FVGKIPDIFTNLTRLSYLGLGGNQLIGSIP 89 (502)
Q Consensus 14 ~ip~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 89 (502)
.|++..+.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++..-.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 46666665664 5999999765 666777789999999999998764 55455678999999998887654 442223
Q ss_pred hhhhcccCCeeccccchhhhhhccCcccEEECCCCcCcccCC---CCCCCCceEeCcCCcCC--ccCCCCCCCccEEEcc
Q 037195 90 SSIFELLNLTFAISVAAWMWDIGVHTLIYLELSRNFLTNIDH---LPWKNLEYLHLDSNLLQ--GSLLNLPPHMREFSIS 164 (502)
Q Consensus 90 ~~~~~l~~L~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~l~ 164 (502)
..+..+ .+|+.+.+..+ +..+.. ..+..|+.+.+..+--. ...+ ....|+.+.+.
T Consensus 131 ~aF~~c------------------~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip 190 (394)
T 4gt6_A 131 EAFHHC------------------EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIP 190 (394)
T ss_dssp TTTTTC------------------TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEEC
T ss_pred hhhhhh------------------cccccccccce-eeeecccceecccccccccccceeeEeccccc-cccceeEEEEC
Confidence 344444 77788888643 222222 35667888877654211 1111 24578888876
Q ss_pred CCcCcccCCccccCCCCCCEEECCCCcCccccccccccc--------------cccEEEccCCccCCCCCCeeeccCccc
Q 037195 165 RNNLTGEIPSSFCNLSYIRFFDSSNNSLSGQILQCLGNS--------------TLDTLDLGMNNFQDMRMNKFSGSLPQT 230 (502)
Q Consensus 165 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------~L~~L~l~~n~~~~~~~~~~~~~~~~~ 230 (502)
.+... .....+..+..+.................+... .+..+.+ + +.+...-...
T Consensus 191 ~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------p-~~v~~i~~~a 260 (394)
T 4gt6_A 191 AKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI--------P-NGVARIETHA 260 (394)
T ss_dssp TTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC--------C-TTEEEECTTT
T ss_pred Ccccc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEc--------C-CcceEcccce
Confidence 54322 444567777777777665543322111111111 1222222 1 1111122346
Q ss_pred hhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCCcCcccCCCCCCCCCCCC
Q 037195 231 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSNRFRGPIDDTKTRVPFPK 310 (502)
Q Consensus 231 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 310 (502)
|..+..|+.+.+..+... +...+|..++.|+.+.+.. .+.......|.++.+|+.+++..+ ++..-...| ..+.+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF--AGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--TTCTT
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh--hCCCC
Confidence 788899999999776543 5667789999999999964 455666778999999999999765 444444444 67899
Q ss_pred ccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccchhhhcCCCCCCEEeCcCCcC
Q 037195 311 LRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEILEVLGKLNSLKSLNISHNNL 378 (502)
Q Consensus 311 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 378 (502)
|+.+.+..+ ++......| ..+++|+.+++.++... ...+..+..|+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF---------~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAF---------SNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGG---------TTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHh---------hCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999754 443323233 45999999999998654 24677788999998877654
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=5.5e-10 Score=107.22 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=84.6
Q ss_pred cEEEccCC-cccccCCcCCCCCCCCCEEeccC-CcCCccCCcccCCCCCCCEEEcccCcCcccCChhhhcccCCeecccc
Q 037195 27 AYLDLSFN-SFSGHIPSSFSNLQQLRLLDLRY-NNFVGKIPDIFTNLTRLSYLGLGGNQLIGSIPSSIFELLNLTFAISV 104 (502)
Q Consensus 27 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~~~~~ 104 (502)
..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+.+|.++++|++|+|++|++++..|..|..+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--------- 79 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT--------- 79 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC---------
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC---------
Confidence 34688888 888 5788 99999999999996 99998888899999999999999999998777788877
Q ss_pred chhhhhhccCcccEEECCCCcCcccCCCCCC--CCceEeCcCCcCC
Q 037195 105 AAWMWDIGVHTLIYLELSRNFLTNIDHLPWK--NLEYLHLDSNLLQ 148 (502)
Q Consensus 105 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~L~~L~l~~n~l~ 148 (502)
++|++|+|++|.++.++...+. .|+.|++.+|.+.
T Consensus 80 ---------~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 80 ---------PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp ---------SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ---------cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 8999999999999988764322 2666666666554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.95 E-value=3.4e-07 Score=88.75 Aligned_cols=57 Identities=7% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 22 DITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 22 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
...+|+.+.+... ++.+...+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..
T Consensus 44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~ 100 (379)
T 4h09_A 44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME 100 (379)
T ss_dssp GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT
T ss_pred cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc
Confidence 4567777777654 55455566888888888888654 554556677776 566666543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=5.3e-10 Score=106.99 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=39.0
Q ss_pred hcccCeeeccCCcccccchhhh---cCCCCCCEEeCcCCcCCCC----CchhccCCCCCCEEeCCCCCCCc
Q 037195 341 LTTFATIDLSSNRFQGEILEVL---GKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 341 ~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
+++|+.|+|++|.+.+..+..+ ..+++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 5667777777766664433333 2466777777777776643 22333456777777777777664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=5.6e-09 Score=99.87 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=108.2
Q ss_pred CccchhcCCCccEEeccCCccccCCCccccCCCCCcEEEccCCccCccCCcccC--CCCCCCEEEccC--CcCcccC---
Q 037195 227 LPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLD--VLPELQVLTLRS--NRFRGPI--- 299 (502)
Q Consensus 227 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~~~~~~--- 299 (502)
+...+..++.|+.|.+++|.-. .++. +. +++|+.|++..+.+.......+. .+|+|+.|+|+. +...+..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667788999999887322 2232 33 78999999998887654434443 689999999863 2221111
Q ss_pred --CCCCCCCCCCCccEEEccCccCCCCCchhhhcCCchhHHHHhcccCeeeccCCcccccc----hhhhcCCCCCCEEeC
Q 037195 300 --DDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLHGNDIQMERILTTFATIDLSSNRFQGEI----LEVLGKLNSLKSLNI 373 (502)
Q Consensus 300 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L 373 (502)
........+|+|+.|++.+|.+....+..+... ..+++|++|+|+.|.+++.. +..+..+++|+.|+|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 011222358999999999998875433322211 23789999999999998753 333355799999999
Q ss_pred cCCcCCCCCchhccC-CCCCCEEeCCCCC
Q 037195 374 SHNNLTGGIPSSLRN-LTELESLDLSSNK 401 (502)
Q Consensus 374 ~~N~l~~~~p~~l~~-l~~L~~L~ls~n~ 401 (502)
++|.++...-..+.. + ...++++.++
T Consensus 315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999987544344433 2 3568888776
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=2.6e-06 Score=82.56 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=48.1
Q ss_pred cCChhhhhCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccC
Q 037195 14 SIPASLGNDITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGN 82 (502)
Q Consensus 14 ~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 82 (502)
.|++..++++++|+.+++..+ ++.+-..+|.++ +|+.+.+..+ +......+|... +|+.+.+..+
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~ 123 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA 123 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc
Confidence 567777778999999999765 665666778887 6888887654 443455667664 7999988654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3e-08 Score=85.52 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=47.9
Q ss_pred HHhcccCeeeccCCccccc----chhhhcCCCCCCEEeC--cCCcCCCC----CchhccCCCCCCEEeCCCCCCC
Q 037195 339 RILTTFATIDLSSNRFQGE----ILEVLGKLNSLKSLNI--SHNNLTGG----IPSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 339 ~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~ls~n~l~ 403 (502)
...++|++|+|++|.+++. +...+...++|++|+| ++|.++.. +...+...++|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456788888888888754 4455667788999999 78888743 3345566688999999999875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=5.2e-08 Score=84.00 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=34.4
Q ss_pred CCCCCcEEEccCC-ccccc----CCcCCCCCCCCCEEeccCCcCCcc----CCcccCCCCCCCEEEcccCcCcc
Q 037195 22 DITQLAYLDLSFN-SFSGH----IPSSFSNLQQLRLLDLRYNNFVGK----IPDIFTNLTRLSYLGLGGNQLIG 86 (502)
Q Consensus 22 ~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~ 86 (502)
..+.|++|+|++| .+... +...+...++|++|+|++|.+... +.+++...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4556666666666 55431 223344555666666666665431 23334444566666666666553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.7e-07 Score=84.90 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=55.5
Q ss_pred hCCCCCcEEEccCCcccc--cCCcCCCCCCCCCEEeccCCcCCccCCcccCCCC--CCCEEEcccCcCcccCC
Q 037195 21 NDITQLAYLDLSFNSFSG--HIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLT--RLSYLGLGGNQLIGSIP 89 (502)
Q Consensus 21 ~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p 89 (502)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|++.+. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 368999999999999987 4456677899999999999999864 3344444 99999999999987776
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=9.8e-07 Score=79.92 Aligned_cols=67 Identities=28% Similarity=0.426 Sum_probs=50.0
Q ss_pred HHhcccCeeeccCCcccc--cchhhhcCCCCCCEEeCcCCcCCCCCchhccCCC--CCCEEeCCCCCCCccCc
Q 037195 339 RILTTFATIDLSSNRFQG--EILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT--ELESLDLSSNKLAGRIP 407 (502)
Q Consensus 339 ~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~ls~n~l~~~~p 407 (502)
..+++|++|+|++|++++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 347788888888888887 3456667788888888888888754 2333344 88888999998887665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=1.3e-06 Score=73.22 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=53.5
Q ss_pred CCEEEecCCCCcccCChhhhhCCCCCcEEEccCCc-ccccCCcCCCCC----CCCCEEeccCCc-CCccCCcccCCCCCC
Q 037195 1 MTLRNLSSSYFMGSIPASLGNDITQLAYLDLSFNS-FSGHIPSSFSNL----QQLRLLDLRYNN-FVGKIPDIFTNLTRL 74 (502)
Q Consensus 1 l~~L~Ls~n~~~~~ip~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l~~L 74 (502)
|+.||++++.+++.--..+. .+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+.++++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred EeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45778888777654334454 67788888888874 554333345553 368888887774 665444556677888
Q ss_pred CEEEcccCc
Q 037195 75 SYLGLGGNQ 83 (502)
Q Consensus 75 ~~L~L~~n~ 83 (502)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888775
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=2.4e-06 Score=71.74 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=59.8
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCCc-CCccCCcccCCC----CCCCEEEcccCc-CcccCChhhhccc
Q 037195 23 ITQLAYLDLSFNSFSGHIPSSFSNLQQLRLLDLRYNN-FVGKIPDIFTNL----TRLSYLGLGGNQ-LIGSIPSSIFELL 96 (502)
Q Consensus 23 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~ 96 (502)
-..|+.||+++|.++..--..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++..--..+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~- 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF- 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-
Confidence 3468999999998876655668899999999999985 665444556664 479999999985 653322233333
Q ss_pred CCeeccccchhhhhhccCcccEEECCCC
Q 037195 97 NLTFAISVAAWMWDIGVHTLIYLELSRN 124 (502)
Q Consensus 97 ~L~~~~~~~~~~~~~~~~~L~~L~l~~n 124 (502)
++|++|+++++
T Consensus 139 -----------------~~L~~L~L~~c 149 (176)
T 3e4g_A 139 -----------------RNLKYLFLSDL 149 (176)
T ss_dssp -----------------TTCCEEEEESC
T ss_pred -----------------CCCCEEECCCC
Confidence 77777777766
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=7e-05 Score=64.02 Aligned_cols=81 Identities=9% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCEEEecCC-CCccc----CChhhhhCCCCCcEEEccCCccccc----CCcCCCCCCCCCEEeccCCcCCcc----CCcc
Q 037195 1 MTLRNLSSS-YFMGS----IPASLGNDITQLAYLDLSFNSFSGH----IPSSFSNLQQLRLLDLRYNNFVGK----IPDI 67 (502)
Q Consensus 1 l~~L~Ls~n-~~~~~----ip~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~ 67 (502)
|+.|+|++| .+.+. +...+. .-+.|+.|+|++|.|... +...+..-+.|++|+|+.|.|... +.++
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 355666654 44321 233333 445566666666665432 222233445566666666665531 2334
Q ss_pred cCCCCCCCEEEcccC
Q 037195 68 FTNLTRLSYLGLGGN 82 (502)
Q Consensus 68 ~~~l~~L~~L~L~~n 82 (502)
+..-..|++|+|+++
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 445555666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=0.00021 Score=61.11 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=39.3
Q ss_pred HhcccCeeeccCCccccc----chhhhcCCCCCCEEeCcCC---cCCC----CCchhccCCCCCCEEeCCCCCCC
Q 037195 340 ILTTFATIDLSSNRFQGE----ILEVLGKLNSLKSLNISHN---NLTG----GIPSSLRNLTELESLDLSSNKLA 403 (502)
Q Consensus 340 ~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~ls~n~l~ 403 (502)
.-+.|++|+|++|.|.+. +.+.+..-+.|++|+|++| .+.. .+-..+..-++|..|+++.|.+-
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 345667777777776643 3344555667888888755 3332 12345556678888888877643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.09 E-value=0.00081 Score=53.58 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=43.7
Q ss_pred CeeeccCCccc-ccchhhhcCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeCCCCCCCc
Q 037195 345 ATIDLSSNRFQ-GEILEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 404 (502)
Q Consensus 345 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 404 (502)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36777777776 24454332 468999999999986666778889999999999998864
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.00097 Score=53.11 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=34.5
Q ss_pred EEEccCCccc-ccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEcccCcCc
Q 037195 28 YLDLSFNSFS-GHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGGNQLI 85 (502)
Q Consensus 28 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (502)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666654 23443221 25777777777777555566677777777777777654
No 165
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=87.66 E-value=0.45 Score=28.62 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=10.2
Q ss_pred hhhHHHHHHHH-HHhhhhhhcCCCC
Q 037195 479 LGYASGVVIGL-SIGYMAFVTGRPQ 502 (502)
Q Consensus 479 ~~~~~~~~~~~-~~~~~~~~~~~~~ 502 (502)
.++.+++++.+ +++.+++++||||
T Consensus 17 ~~vv~Gv~ll~~iv~~~~~~~rRr~ 41 (41)
T 2k9y_A 17 GGVAVGVVLLLVLAGVGFFIHRRRK 41 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred eehhHHHHHHHHHHHHheeEeeecC
Confidence 33333433333 3333445555554
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=85.64 E-value=1 Score=27.36 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHH--HHhhhhhhcCCC
Q 037195 477 AKLGYASGVVIGL--SIGYMAFVTGRP 501 (502)
Q Consensus 477 ~~~~~~~~~~~~~--~~~~~~~~~~~~ 501 (502)
++.++++++++.+ +++.+++++||+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3444444333322 233344444443
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=81.73 E-value=0.72 Score=28.00 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHH--HhhhhhhcCCC
Q 037195 477 AKLGYASGVVIGLS--IGYMAFVTGRP 501 (502)
Q Consensus 477 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 501 (502)
++.++++++++.++ ++.+++++|||
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34444443333222 23334444443
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=80.50 E-value=1.2 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHH--HHhhhhhhcCCC
Q 037195 478 KLGYASGVVIGL--SIGYMAFVTGRP 501 (502)
Q Consensus 478 ~~~~~~~~~~~~--~~~~~~~~~~~~ 501 (502)
+.+++++.++++ ++++.++++|||
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeecC
Confidence 344444444333 333444455543
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=79.76 E-value=0.64 Score=28.16 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.6
Q ss_pred hhhhcCCC
Q 037195 494 MAFVTGRP 501 (502)
Q Consensus 494 ~~~~~~~~ 501 (502)
++|.+|||
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 44444443
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=79.24 E-value=0.81 Score=26.11 Aligned_cols=7 Identities=0% Similarity=-0.273 Sum_probs=2.8
Q ss_pred hhhhhHH
Q 037195 477 AKLGYAS 483 (502)
Q Consensus 477 ~~~~~~~ 483 (502)
++.++++
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 3344434
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.97 E-value=11 Score=27.65 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=28.1
Q ss_pred ccccCCcCCCCCCCCCEEeccCCcCCccCCcccCCCCCCCEEEccc
Q 037195 36 FSGHIPSSFSNLQQLRLLDLRYNNFVGKIPDIFTNLTRLSYLGLGG 81 (502)
Q Consensus 36 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 81 (502)
++.+-...|.++..|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444456777777777777654 3435556677777777777654
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.35 E-value=24 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=26.5
Q ss_pred cccCCCccccCCCCCcEEEccCCccCccCCcccCCCCCCCEEEccCC
Q 037195 247 LEGPLPPSLVNCRHLEVIDVGNNQINDTFPHWLDVLPELQVLTLRSN 293 (502)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 293 (502)
++.+-..+|..|+.|+.+.+-.+ +.......|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34444455666666666666554 23344456666667766666543
No 173
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=38.72 E-value=11 Score=21.11 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.6
Q ss_pred hhhhhcCCC
Q 037195 493 YMAFVTGRP 501 (502)
Q Consensus 493 ~~~~~~~~~ 501 (502)
.+.+|++||
T Consensus 26 tflywrgrr 34 (40)
T 2l9u_A 26 TFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHH
T ss_pred eeEEEcccc
Confidence 345555553
No 174
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.30 E-value=48 Score=19.78 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=5.6
Q ss_pred hhhhHHHHHHHHH
Q 037195 478 KLGYASGVVIGLS 490 (502)
Q Consensus 478 ~~~~~~~~~~~~~ 490 (502)
..++.+++++..+
T Consensus 14 i~s~l~GLllL~l 26 (42)
T 2k1a_A 14 LVGVLGGLLLLTI 26 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 175
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.45 E-value=52 Score=20.85 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=5.0
Q ss_pred hhhhHHHHHHHH
Q 037195 478 KLGYASGVVIGL 489 (502)
Q Consensus 478 ~~~~~~~~~~~~ 489 (502)
++++.+++++..
T Consensus 13 i~svl~GLLLL~ 24 (54)
T 2l8s_A 13 LLSAFAGLLLLM 24 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 176
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.23 E-value=51 Score=20.92 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.1
Q ss_pred hhhhHHHHHHHH
Q 037195 478 KLGYASGVVIGL 489 (502)
Q Consensus 478 ~~~~~~~~~~~~ 489 (502)
+.++.+++++..
T Consensus 16 i~svl~GLllL~ 27 (54)
T 2knc_A 16 LVGVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 177
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=35.00 E-value=12 Score=22.32 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=5.3
Q ss_pred HHHHHhhhhhhcCC
Q 037195 487 IGLSIGYMAFVTGR 500 (502)
Q Consensus 487 ~~~~~~~~~~~~~~ 500 (502)
++.++++.++..||
T Consensus 29 i~~vIVvsl~mlRr 42 (43)
T 2llm_A 29 IATVIVITLVMLKK 42 (43)
Confidence 33333333334443
No 178
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=31.45 E-value=15 Score=21.37 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.8
Q ss_pred HhhhhhhcCCC
Q 037195 491 IGYMAFVTGRP 501 (502)
Q Consensus 491 ~~~~~~~~~~~ 501 (502)
++.++.+.+++
T Consensus 26 IiLi~~w~qKP 36 (39)
T 2l6w_A 26 IILIMLWQKKP 36 (39)
Confidence 33444444444
No 179
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=22.64 E-value=26 Score=17.77 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhhcCCCC
Q 037195 485 VVIGLSIGYMAFVTGRPQ 502 (502)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~ 502 (502)
++..++-.++-|.+|+||
T Consensus 8 VLa~~LP~liSWiK~kr~ 25 (26)
T 3qrx_B 8 VLTTGLPALISWIKRKRQ 25 (26)
T ss_pred HHHccchHHHHHHHHHhc
Confidence 333333344445555543
No 180
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=27.34 E-value=19 Score=26.70 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=3.7
Q ss_pred HhhhhhhcCC
Q 037195 491 IGYMAFVTGR 500 (502)
Q Consensus 491 ~~~~~~~~~~ 500 (502)
++.+++.+||
T Consensus 47 Vv~l~v~rrr 56 (122)
T 2lp1_A 47 VITLVMLKKK 56 (122)
Confidence 3333333333
Done!