BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037198
         (308 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 60/144 (41%), Gaps = 20/144 (13%)

Query: 7   LRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASDDIPVK---DCDLYSPHEPNLIWDL 63
           L   P  RF+PT+ EL+E YL  K         A   +PV    + DLY   +P   WDL
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRK--------AAGQRLPVPIIAEVDLYK-FDP---WDL 60

Query: 64  YGGDQLMAGQALYFFTQLKKASPKGSRFNIKIGFDAWQGEDRAKLVLAVGSEDQILGFKK 123
                L   +  YFFT   +  P GSR N   G   W+     K V   G   + LG KK
Sbjct: 61  -PERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG---RTLGIKK 116

Query: 124 RFR-YESRENLEQNGRWIMHEFTI 146
               Y  +        WIMHE+ +
Sbjct: 117 ALVFYAGKAPRGVKTDWIMHEYRL 140


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 14/145 (9%)

Query: 3   PHVGLRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASDDIPVKDCDLYSPHEPNLIWD 62
           P   L   P  RFYPT++EL+  YL  K       Y  S  + + + DLY   +P ++  
Sbjct: 14  PLTQLSLPPGFRFYPTDEELMVQYLCRKAAG----YDFSLQL-IAEIDLYK-FDPWVL-- 65

Query: 63  LYGGDQLMAGQALYFFTQLKKASPKGSRFNIKIGFDAWQGEDRAKLVLAVGSEDQILGFK 122
                 L   +  YFF+   +  P GSR N   G   W+     K+   + +E Q +G K
Sbjct: 66  --PNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI---ISTEGQRVGIK 120

Query: 123 KRFR-YESRENLEQNGRWIMHEFTI 146
           K    Y  +        WIMHE+ +
Sbjct: 121 KALVFYIGKAPKGTKTNWIMHEYRL 145


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 14/145 (9%)

Query: 3   PHVGLRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASDDIPVKDCDLYSPHEPNLIWD 62
           P   L   P  RFYPT++EL+  YL  K       Y  S  + + + DLY   +P ++  
Sbjct: 11  PLTQLSLPPGFRFYPTDEELMVQYLCRKAAG----YDFSLQL-IAEIDLYK-FDPWVL-- 62

Query: 63  LYGGDQLMAGQALYFFTQLKKASPKGSRFNIKIGFDAWQGEDRAKLVLAVGSEDQILGFK 122
                 L   +  YFF+   +  P GSR N   G   W+     K+   + +E Q +G K
Sbjct: 63  --PNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI---ISTEGQRVGIK 117

Query: 123 KRFR-YESRENLEQNGRWIMHEFTI 146
           K    Y  +        WIMHE+ +
Sbjct: 118 KALVFYIGKAPKGTKTNWIMHEYRL 142


>pdb|3TSS|A Chain A, Toxic Shock Syndrome Toxin-1 Tetramutant, P2(1) Crystal
           Form
          Length = 194

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 7   LRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASD 42
           L+++P           L+F + H++TQ H LY++SD
Sbjct: 113 LKYWPKFDKKQLAISTLDFKIRHQLTQTHGLYRSSD 148


>pdb|1TS5|A Chain A, I140t Mutant Of Toxic Shock Syndrome Toxin-1 From S.
           Aureus
 pdb|1TS5|B Chain B, I140t Mutant Of Toxic Shock Syndrome Toxin-1 From S.
           Aureus
          Length = 194

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 7   LRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASD 42
           L+++P           L+F + H++TQ H LY++SD
Sbjct: 113 LKYWPKFDKKQLAISTLDFEIRHQLTQTHGLYRSSD 148


>pdb|2QIL|A Chain A, Toxic Shock Syndrome Toxin-1 At 2.07 A Resolution
 pdb|2QIL|B Chain B, Toxic Shock Syndrome Toxin-1 At 2.07 A Resolution
 pdb|2QIL|C Chain C, Toxic Shock Syndrome Toxin-1 At 2.07 A Resolution
 pdb|2TSS|A Chain A, Toxic Shock Syndrome Toxin-1 From Staphylococcus Aureus:
           Orthorhombicc222(1) Crystal Form
 pdb|2TSS|B Chain B, Toxic Shock Syndrome Toxin-1 From Staphylococcus Aureus:
           Orthorhombicc222(1) Crystal Form
 pdb|2TSS|C Chain C, Toxic Shock Syndrome Toxin-1 From Staphylococcus Aureus:
           Orthorhombicc222(1) Crystal Form
 pdb|5TSS|A Chain A, Toxic Shock Syndrome Toxin-1: Orthorhombic P222(1) Crystal
           Form
 pdb|5TSS|B Chain B, Toxic Shock Syndrome Toxin-1: Orthorhombic P222(1) Crystal
           Form
 pdb|2IJ0|A Chain A, Structural Basis Of T Cell Specificity And Activation By
           The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
 pdb|2IJ0|B Chain B, Structural Basis Of T Cell Specificity And Activation By
           The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
 pdb|4TSS|A Chain A, Toxic Shock Syndrome Toxin-1: Tetragonal P4(1)2(1)2
           Crystal Form
 pdb|3MFG|A Chain A, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
           In Complex With The Human T Cell Receptor Beta Chain
           Vbeta2.1 (Ep-8)
          Length = 194

 Score = 27.3 bits (59), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 7   LRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASD 42
           L+++P           L+F + H++TQ H LY++SD
Sbjct: 113 LKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSD 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,647,780
Number of Sequences: 62578
Number of extensions: 333740
Number of successful extensions: 606
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 9
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)