Query 037198
Match_columns 308
No_of_seqs 161 out of 972
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.6E-54 5.6E-59 381.9 15.9 156 4-172 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 4.1E-54 1.4E-58 378.5 16.3 157 3-173 11-168 (171)
3 1ldd_A APC2WHB, anaphase promo 35.4 22 0.00076 26.6 2.5 25 9-34 36-61 (74)
4 4dox_A Coat protein; all helix 25.4 32 0.0011 31.0 2.2 28 5-32 151-178 (226)
5 3nr5_A MAF1, repressor of RNA 13.0 62 0.0021 27.7 1.0 15 45-60 118-132 (164)
6 2ojp_A DHDPS, dihydrodipicolin 12.6 1.2E+02 0.004 27.4 2.9 24 8-34 102-125 (292)
7 1o5k_A DHDPS, dihydrodipicolin 11.8 1.3E+02 0.0044 27.5 2.9 27 8-37 113-139 (306)
8 1cmb_A Met APO-repressor; DNA- 10.7 2.1E+02 0.0072 22.3 3.3 38 16-63 50-87 (104)
9 2v9d_A YAGE; dihydrodipicolini 10.5 1.4E+02 0.0046 27.9 2.6 27 8-37 132-158 (343)
10 1xky_A Dihydrodipicolinate syn 10.4 1.4E+02 0.0047 27.2 2.6 27 8-37 113-139 (301)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.6e-54 Score=381.93 Aligned_cols=156 Identities=28% Similarity=0.432 Sum_probs=129.6
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHhHhcCCCCCCCCCCcccccCCCCCCCCcchhhhhcCCCcccCCceEEEEeeccc
Q 037198 4 HVGLRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASDDIPVKDCDLYSPHEPNLIWDLYGGDQLMAGQALYFFTQLKK 83 (308)
Q Consensus 4 ~~~~~LPpGfRF~PTDeELI~~YL~~Ki~~g~~lp~~~~~~~I~evDlY~~~ePwdLp~~~g~~~~~~~~eWYFFs~r~r 83 (308)
.+++.|||||||+|||||||.|||++|+. |.++| ..+|+++||| ++|||+||+.+ ..++++|||||++++
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~-g~~~~----~~~I~evDvy-~~~Pw~Lp~~~----~~g~~ewYFFs~r~~ 79 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAA-GQRLP----VPIIAEVDLY-KFDPWDLPERA----LFGAREWYFFTPRDR 79 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHH-TCCCS----SSCCEECCGG-GSCGGGSGGGC----SSCSSEEEEEEECCC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhc-CCCCC----cCeeeecccc-cCCchhhhhhh----ccCCceEEEEecccc
Confidence 45679999999999999999999999999 77775 2689999999 69999999863 356789999999999
Q ss_pred cCCCCCccceeeccceeeecCCCeEEEecCCCCeEEEEEEEEeee-cCCCCCCCcCeEEEEEEeCccccCC----cCCCC
Q 037198 84 ASPKGSRFNIKIGFDAWQGEDRAKLVLAVGSEDQILGFKKRFRYE-SRENLEQNGRWIMHEFTINAALFGD----QYSHK 158 (308)
Q Consensus 84 k~~~G~R~~Rat~~G~WK~tG~~k~I~~~~~~g~vVG~KKtLvF~-~r~p~g~kT~WvMhEY~L~~~~~~~----~~~~~ 158 (308)
||++|.|++|+|++||||+||++++|... |.+||+||+|+|| +++|++.+|+|+||||+|....... .....
T Consensus 80 ky~~g~R~nR~t~~G~WkatG~dk~I~~~---g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~ 156 (174)
T 3ulx_A 80 KYPNGSRPNRAAGNGYWKATGADKPVAPR---GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLR 156 (174)
T ss_dssp -----CCSCEEETTEEEEECSCCEEECCS---SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------C
T ss_pred ccCCCCCceeecCCceEccCCCCcEEeeC---CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCC
Confidence 99999999999999999999999999764 7899999999996 6678999999999999999875421 11235
Q ss_pred CCcEEEEEEEEcCC
Q 037198 159 ARNFVLYCVKKNEL 172 (308)
Q Consensus 159 ~~~~VLCRIf~K~~ 172 (308)
.++|||||||+|+.
T Consensus 157 ~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 157 LDDWVLCRLYNKKN 170 (174)
T ss_dssp CSSEEEEEEEESCC
T ss_pred CCCEEEEEEEEcCC
Confidence 78999999999873
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4.1e-54 Score=378.51 Aligned_cols=157 Identities=27% Similarity=0.460 Sum_probs=126.7
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHHhHhcCCCCCCCCCCcccccCCCCCCCCcchhhhhcCCCcccCCceEEEEeecc
Q 037198 3 PHVGLRFYPVLRFYPTEQELLEFYLLHKITQNHNLYQASDDIPVKDCDLYSPHEPNLIWDLYGGDQLMAGQALYFFTQLK 82 (308)
Q Consensus 3 p~~~~~LPpGfRF~PTDeELI~~YL~~Ki~~g~~lp~~~~~~~I~evDlY~~~ePwdLp~~~g~~~~~~~~eWYFFs~r~ 82 (308)
+.....|||||||+|||||||.|||++|+. |.+++ ..+|+++||| ++|||+||+.+ ..++++|||||+++
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~-g~~~~----~~~I~e~Diy-~~~Pw~Lp~~~----~~g~~ewyFFs~r~ 80 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAA-GYDFS----LQLIAEIDLY-KFDPWVLPNKA----LFGEKEWYFFSPRD 80 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHT-TCCCS----SCCSEECCGG-GSCGGGHHHHS----SSCSSEEEEEEECC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhc-CCCCC----CCeEeecccc-cCChhHhhchh----hcCCccEEEEeccc
Confidence 345679999999999999999999999999 77775 3689999999 69999999973 45789999999999
Q ss_pred ccCCCCCccceeeccceeeecCCCeEEEecCCCCeEEEEEEEEeee-cCCCCCCCcCeEEEEEEeCccccCCcCCCCCCc
Q 037198 83 KASPKGSRFNIKIGFDAWQGEDRAKLVLAVGSEDQILGFKKRFRYE-SRENLEQNGRWIMHEFTINAALFGDQYSHKARN 161 (308)
Q Consensus 83 rk~~~G~R~~Rat~~G~WK~tG~~k~I~~~~~~g~vVG~KKtLvF~-~r~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~ 161 (308)
+||++|.|++|+|++||||+||++++|... +.+||+||+|+|| +++|++.+|+|+||||+|...... ......++
T Consensus 81 ~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~---~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~-~~~~~~~~ 156 (171)
T 1ut7_A 81 RKYPNGSRPNRVAGSGYWKATGTDKIISTE---GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR-NGSTKLDD 156 (171)
T ss_dssp C-------CCEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------CC
T ss_pred cccCCCCcccccCCCCEEeccCCCceEEec---CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc-cCcccCCC
Confidence 999999999999999999999999999975 7899999999996 567899999999999999987421 12245789
Q ss_pred EEEEEEEEcCCC
Q 037198 162 FVLYCVKKNELE 173 (308)
Q Consensus 162 ~VLCRIf~K~~~ 173 (308)
|||||||+|+.+
T Consensus 157 ~VlCrv~~k~~~ 168 (171)
T 1ut7_A 157 WVLCRIYKKQSS 168 (171)
T ss_dssp EEEEEEEECC--
T ss_pred EEEEEEEEcCCC
Confidence 999999999854
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=35.43 E-value=22 Score=26.55 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=21.1
Q ss_pred CCCCceeCC-ChHHHHHHHHHHhHhcC
Q 037198 9 FYPVLRFYP-TEQELLEFYLLHKITQN 34 (308)
Q Consensus 9 LPpGfRF~P-TDeELI~~YL~~Ki~~g 34 (308)
.|.|+.|.. |++||-. ||-.|+..+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~ 61 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEG 61 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCC
Confidence 377899999 9999988 899999843
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=25.42 E-value=32 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=19.7
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHhHh
Q 037198 5 VGLRFYPVLRFYPTEQELLEFYLLHKIT 32 (308)
Q Consensus 5 ~~~~LPpGfRF~PTDeELI~~YL~~Ki~ 32 (308)
+.+..+-|..+.||++|+|.|=..+++.
T Consensus 151 AAl~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 151 AAMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp TSCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3556666999999999999986666654
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.97 E-value=62 Score=27.67 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=11.5
Q ss_pred ccccCCCCCCCCcchh
Q 037198 45 PVKDCDLYSPHEPNLI 60 (308)
Q Consensus 45 ~I~evDlY~~~ePwdL 60 (308)
.+.+|||| .+.|..-
T Consensus 118 ~l~dC~IY-sY~Pd~~ 132 (164)
T 3nr5_A 118 CLAECDIY-SYNPDLD 132 (164)
T ss_dssp CGGGCEEE-EECCCGG
T ss_pred CccCCeEE-EEcCCCC
Confidence 36789999 5999843
No 6
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=12.64 E-value=1.2e+02 Score=27.45 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=17.8
Q ss_pred CCCCCceeCCChHHHHHHHHHHhHhcC
Q 037198 8 RFYPVLRFYPTEQELLEFYLLHKITQN 34 (308)
Q Consensus 8 ~LPpGfRF~PTDeELI~~YL~~Ki~~g 34 (308)
-+||- -|.||+++|+.|| +.|++.
T Consensus 102 v~~P~-y~~~s~~~l~~~f--~~ia~a 125 (292)
T 2ojp_A 102 TVTPY-YNRPSQEGLYQHF--KAIAEH 125 (292)
T ss_dssp EECCC-SSCCCHHHHHHHH--HHHHTT
T ss_pred ECCCC-CCCCCHHHHHHHH--HHHHHh
Confidence 34664 4889999999998 667633
No 7
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=11.76 E-value=1.3e+02 Score=27.45 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.9
Q ss_pred CCCCCceeCCChHHHHHHHHHHhHhcCCCC
Q 037198 8 RFYPVLRFYPTEQELLEFYLLHKITQNHNL 37 (308)
Q Consensus 8 ~LPpGfRF~PTDeELI~~YL~~Ki~~g~~l 37 (308)
-+||- -|.||+++|+.|| +.|++..++
T Consensus 113 v~~P~-y~~~s~~~l~~~f--~~va~a~~l 139 (306)
T 1o5k_A 113 VVTPY-YNKPTQEGLYQHY--KYISERTDL 139 (306)
T ss_dssp EECCC-SSCCCHHHHHHHH--HHHHTTCSS
T ss_pred ECCCC-CCCCCHHHHHHHH--HHHHHhCCC
Confidence 34664 4789999999998 667643333
No 8
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=10.72 E-value=2.1e+02 Score=22.26 Aligned_cols=38 Identities=32% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHhHhcCCCCCCCCCCcccccCCCCCCCCcchhhhh
Q 037198 16 YPTEQELLEFYLLHKITQNHNLYQASDDIPVKDCDLYSPHEPNLIWDL 63 (308)
Q Consensus 16 ~PTDeELI~~YL~~Ki~~g~~lp~~~~~~~I~evDlY~~~ePwdLp~~ 63 (308)
|-|..||++.-...-.. |+|||. |-|+- +..|.++|..
T Consensus 50 HATNSELLCEAFLHA~T-GQPLP~--------D~Dl~-Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFT-GQPLPD--------DADLR-KERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHH-CCCCCC--------GGGGB-TTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhc-CCCCCC--------chhhh-hcCCccchHH
Confidence 56888888653333444 889863 45665 6778877764
No 9
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=10.49 E-value=1.4e+02 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=18.8
Q ss_pred CCCCCceeCCChHHHHHHHHHHhHhcCCCC
Q 037198 8 RFYPVLRFYPTEQELLEFYLLHKITQNHNL 37 (308)
Q Consensus 8 ~LPpGfRF~PTDeELI~~YL~~Ki~~g~~l 37 (308)
-+||- -|.||+++|+.|| +.|++..++
T Consensus 132 v~~P~-Y~~~s~~~l~~~f--~~VA~a~~l 158 (343)
T 2v9d_A 132 VINPY-YWKVSEANLIRYF--EQVADSVTL 158 (343)
T ss_dssp EECCS-SSCCCHHHHHHHH--HHHHHTCSS
T ss_pred ECCCC-CCCCCHHHHHHHH--HHHHHhcCC
Confidence 34664 4889999999998 566644334
No 10
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=10.44 E-value=1.4e+02 Score=27.16 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=18.9
Q ss_pred CCCCCceeCCChHHHHHHHHHHhHhcCCCC
Q 037198 8 RFYPVLRFYPTEQELLEFYLLHKITQNHNL 37 (308)
Q Consensus 8 ~LPpGfRF~PTDeELI~~YL~~Ki~~g~~l 37 (308)
-+|| +-|.||+++|+.|| +.|++..++
T Consensus 113 v~~P-~y~~~s~~~l~~~f--~~va~a~~l 139 (301)
T 1xky_A 113 LVAP-YYNKPSQEGMYQHF--KAIAESTPL 139 (301)
T ss_dssp EECC-CSSCCCHHHHHHHH--HHHHHTCSS
T ss_pred EcCC-CCCCCCHHHHHHHH--HHHHHhcCC
Confidence 4566 45889999999998 566643334
Done!