Query 037200
Match_columns 151
No_of_seqs 132 out of 1148
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 09:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 8.4E-29 1.8E-33 151.2 17.0 139 5-146 20-158 (160)
2 KOG0027 Calmodulin and related 100.0 5E-27 1.1E-31 145.7 16.9 140 4-145 7-150 (151)
3 PTZ00183 centrin; Provisional 99.9 2.8E-24 6E-29 134.6 18.0 140 5-146 17-156 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 4.9E-24 1.1E-28 128.0 15.8 139 5-145 33-171 (172)
5 PTZ00184 calmodulin; Provision 99.9 1.1E-23 2.3E-28 130.6 17.0 138 5-144 11-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 2.2E-20 4.7E-25 111.6 16.6 136 5-146 32-167 (171)
7 KOG0037 Ca2+-binding protein, 99.9 1.2E-19 2.6E-24 114.7 15.5 132 4-144 56-188 (221)
8 KOG0030 Myosin essential light 99.8 1.6E-19 3.4E-24 106.2 13.5 137 5-144 11-151 (152)
9 KOG0034 Ca2+/calmodulin-depend 99.8 1.4E-19 3.1E-24 114.4 13.9 138 5-146 33-177 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5.5E-19 1.2E-23 111.8 13.4 142 3-145 24-176 (193)
11 KOG0036 Predicted mitochondria 99.8 1.2E-17 2.6E-22 114.4 14.8 134 5-146 14-148 (463)
12 KOG4223 Reticulocalbin, calume 99.6 2.1E-14 4.5E-19 96.0 9.2 134 5-140 163-301 (325)
13 KOG0037 Ca2+-binding protein, 99.6 1.1E-13 2.3E-18 88.0 11.2 91 5-102 124-216 (221)
14 KOG4223 Reticulocalbin, calume 99.6 8E-14 1.7E-18 93.2 10.5 141 4-145 76-229 (325)
15 KOG0027 Calmodulin and related 99.6 1.7E-13 3.7E-18 85.1 11.3 104 2-106 41-149 (151)
16 PLN02964 phosphatidylserine de 99.5 4.8E-13 1E-17 98.6 14.1 97 5-106 143-243 (644)
17 PF13499 EF-hand_7: EF-hand do 99.5 1.4E-13 3.1E-18 73.7 8.0 64 79-142 1-66 (66)
18 KOG0044 Ca2+ sensor (EF-Hand s 99.5 4.1E-13 8.9E-18 85.3 10.4 102 5-106 64-175 (193)
19 COG5126 FRQ1 Ca2+-binding prot 99.5 1.2E-12 2.7E-17 80.5 11.9 103 2-106 53-156 (160)
20 PTZ00183 centrin; Provisional 99.5 2.7E-12 5.8E-17 80.2 12.6 103 3-106 51-154 (158)
21 PF13499 EF-hand_7: EF-hand do 99.5 4.2E-13 9.2E-18 71.8 7.7 62 6-67 1-66 (66)
22 cd05022 S-100A13 S-100A13: S-1 99.5 2.7E-13 5.9E-18 76.2 7.0 66 78-145 8-76 (89)
23 cd05022 S-100A13 S-100A13: S-1 99.4 1.5E-12 3.2E-17 73.2 7.7 67 5-71 8-77 (89)
24 KOG0377 Protein serine/threoni 99.4 8.5E-12 1.8E-16 87.0 12.6 139 4-144 463-615 (631)
25 PTZ00184 calmodulin; Provision 99.4 1.2E-11 2.6E-16 76.5 12.3 102 3-105 45-147 (149)
26 cd05027 S-100B S-100B: S-100B 99.4 3.4E-12 7.5E-17 71.8 7.8 65 78-144 8-79 (88)
27 KOG0038 Ca2+-binding kinase in 99.4 6.6E-12 1.4E-16 75.0 8.9 103 43-146 73-179 (189)
28 KOG0034 Ca2+/calmodulin-depend 99.4 1.9E-11 4.2E-16 77.6 10.8 102 6-107 67-176 (187)
29 cd05027 S-100B S-100B: S-100B 99.4 1.1E-11 2.4E-16 69.8 8.2 66 5-70 8-80 (88)
30 PF13833 EF-hand_8: EF-hand do 99.3 1.1E-11 2.4E-16 63.6 6.7 52 91-144 1-53 (54)
31 cd05029 S-100A6 S-100A6: S-100 99.3 2.4E-11 5.1E-16 68.4 7.8 66 78-145 10-80 (88)
32 cd05031 S-100A10_like S-100A10 99.3 2.5E-11 5.5E-16 69.4 7.8 67 78-146 8-81 (94)
33 cd05026 S-100Z S-100Z: S-100Z 99.3 4.4E-11 9.5E-16 68.2 7.8 66 78-145 10-82 (93)
34 cd05025 S-100A1 S-100A1: S-100 99.3 5.3E-11 1.2E-15 67.8 8.1 67 78-144 9-80 (92)
35 PLN02964 phosphatidylserine de 99.2 1.9E-10 4.1E-15 85.1 12.0 100 40-145 142-244 (644)
36 cd05026 S-100Z S-100Z: S-100Z 99.2 1E-10 2.2E-15 66.7 8.4 67 5-71 10-83 (93)
37 KOG2562 Protein phosphatase 2 99.2 1.4E-10 3.1E-15 81.2 10.6 128 10-141 283-421 (493)
38 cd05025 S-100A1 S-100A1: S-100 99.2 1E-10 2.3E-15 66.6 8.4 67 4-70 8-81 (92)
39 cd05029 S-100A6 S-100A6: S-100 99.2 1.2E-10 2.5E-15 65.6 8.3 65 6-70 11-80 (88)
40 cd00052 EH Eps15 homology doma 99.2 9.6E-11 2.1E-15 62.7 7.4 60 81-144 2-61 (67)
41 cd05031 S-100A10_like S-100A10 99.2 1.2E-10 2.6E-15 66.6 8.2 67 4-70 7-80 (94)
42 smart00027 EH Eps15 homology d 99.2 1.4E-10 3.1E-15 66.6 8.3 63 77-143 9-71 (96)
43 cd00052 EH Eps15 homology doma 99.2 1.1E-10 2.4E-15 62.5 7.4 61 8-70 2-62 (67)
44 PF13833 EF-hand_8: EF-hand do 99.2 1.4E-10 2.9E-15 59.5 7.2 52 18-69 1-53 (54)
45 cd00051 EFh EF-hand, calcium b 99.2 1.9E-10 4.2E-15 60.2 8.0 61 80-142 2-62 (63)
46 KOG0028 Ca2+-binding protein ( 99.2 8.2E-10 1.8E-14 67.2 11.2 103 3-106 67-170 (172)
47 cd00213 S-100 S-100: S-100 dom 99.2 1.4E-10 3.1E-15 65.5 7.4 68 78-145 8-80 (88)
48 smart00027 EH Eps15 homology d 99.2 3.4E-10 7.4E-15 65.0 8.4 64 5-70 10-73 (96)
49 cd00051 EFh EF-hand, calcium b 99.2 4.2E-10 9E-15 58.9 7.5 61 7-67 2-62 (63)
50 cd00252 SPARC_EC SPARC_EC; ext 99.1 4.6E-10 9.9E-15 66.2 7.7 62 77-144 47-108 (116)
51 cd05023 S-100A11 S-100A11: S-1 99.1 5.5E-10 1.2E-14 63.0 7.7 67 78-144 9-80 (89)
52 cd00213 S-100 S-100: S-100 dom 99.1 5.2E-10 1.1E-14 63.2 7.7 66 5-70 8-80 (88)
53 KOG0041 Predicted Ca2+-binding 99.1 4.2E-10 9E-15 70.9 7.5 81 60-148 87-167 (244)
54 KOG2643 Ca2+ binding protein, 99.1 2.1E-09 4.6E-14 75.0 11.0 135 3-143 231-383 (489)
55 KOG4251 Calcium binding protei 99.1 8.6E-10 1.9E-14 71.7 8.5 67 3-69 99-168 (362)
56 cd05023 S-100A11 S-100A11: S-1 99.1 1.3E-09 2.8E-14 61.5 8.2 66 5-70 9-81 (89)
57 PF14658 EF-hand_9: EF-hand do 99.1 7.4E-10 1.6E-14 57.9 6.6 61 82-144 2-64 (66)
58 KOG0040 Ca2+-binding actin-bun 99.0 9.3E-09 2E-13 81.0 12.9 129 5-143 2253-2397(2399)
59 cd05030 calgranulins Calgranul 99.0 2.3E-09 4.9E-14 60.5 6.7 65 78-144 8-79 (88)
60 KOG0036 Predicted mitochondria 99.0 1.6E-08 3.6E-13 70.3 11.5 127 3-142 49-181 (463)
61 PF14658 EF-hand_9: EF-hand do 99.0 5.2E-09 1.1E-13 54.8 6.8 61 9-69 2-64 (66)
62 KOG0169 Phosphoinositide-speci 99.0 3.4E-08 7.5E-13 73.4 13.3 142 3-149 134-279 (746)
63 cd00252 SPARC_EC SPARC_EC; ext 98.9 1E-08 2.3E-13 60.5 7.6 63 38-105 45-107 (116)
64 cd05030 calgranulins Calgranul 98.9 1.1E-08 2.4E-13 57.7 7.1 66 6-71 9-81 (88)
65 KOG2643 Ca2+ binding protein, 98.9 2.8E-08 6E-13 69.6 9.3 131 9-147 322-456 (489)
66 cd05024 S-100A10 S-100A10: A s 98.7 2.8E-07 6E-12 51.7 8.5 65 6-71 9-78 (91)
67 PF00036 EF-hand_1: EF hand; 98.7 3.4E-08 7.4E-13 43.6 3.9 25 81-105 3-27 (29)
68 PF00036 EF-hand_1: EF hand; 98.7 3.3E-08 7.1E-13 43.6 3.7 27 7-33 2-28 (29)
69 KOG0751 Mitochondrial aspartat 98.7 2E-06 4.4E-11 61.6 13.4 103 4-109 32-139 (694)
70 KOG0031 Myosin regulatory ligh 98.6 4.7E-07 1E-11 55.0 8.0 99 2-105 65-164 (171)
71 cd05024 S-100A10 S-100A10: A s 98.6 8E-07 1.7E-11 49.8 8.0 64 78-144 8-76 (91)
72 PF14788 EF-hand_10: EF hand; 98.6 4.6E-07 1E-11 44.8 6.2 50 21-70 1-50 (51)
73 PF13405 EF-hand_6: EF-hand do 98.5 1.9E-07 4.2E-12 42.0 3.9 29 80-108 2-31 (31)
74 PF13405 EF-hand_6: EF-hand do 98.5 2.2E-07 4.7E-12 41.8 3.7 30 6-35 1-31 (31)
75 KOG0751 Mitochondrial aspartat 98.5 1.2E-06 2.7E-11 62.6 9.2 127 4-140 107-240 (694)
76 PF12763 EF-hand_4: Cytoskelet 98.5 2.2E-06 4.7E-11 49.7 8.4 64 75-143 7-70 (104)
77 KOG0030 Myosin essential light 98.5 4.9E-06 1.1E-10 49.8 9.9 104 40-144 10-116 (152)
78 KOG0038 Ca2+-binding kinase in 98.5 2.8E-06 6E-11 51.3 8.5 99 9-107 75-178 (189)
79 PF14788 EF-hand_10: EF hand; 98.5 1.5E-06 3.2E-11 43.1 5.9 48 94-143 1-48 (51)
80 KOG2562 Protein phosphatase 2 98.4 2.8E-06 6E-11 60.3 8.5 131 6-142 226-377 (493)
81 PF12763 EF-hand_4: Cytoskelet 98.4 4.9E-06 1.1E-10 48.2 8.2 63 5-70 10-72 (104)
82 KOG0041 Predicted Ca2+-binding 98.4 8.3E-06 1.8E-10 51.9 9.4 97 6-102 100-199 (244)
83 PF09279 EF-hand_like: Phospho 98.4 3.9E-06 8.4E-11 46.8 7.1 69 80-149 2-74 (83)
84 KOG0040 Ca2+-binding actin-bun 98.4 1.4E-06 3E-11 69.4 6.6 68 79-146 2254-2326(2399)
85 PRK12309 transaldolase/EF-hand 98.4 3.4E-06 7.3E-11 59.9 8.0 54 76-144 332-385 (391)
86 PF13202 EF-hand_5: EF hand; P 98.3 1.1E-06 2.4E-11 37.3 3.3 23 81-103 2-24 (25)
87 KOG4666 Predicted phosphate ac 98.3 2.8E-06 6.1E-11 57.8 6.1 104 40-146 258-361 (412)
88 KOG0377 Protein serine/threoni 98.3 6.5E-06 1.4E-10 58.3 7.7 69 39-107 545-616 (631)
89 PF13202 EF-hand_5: EF hand; P 98.2 2.1E-06 4.6E-11 36.4 3.1 24 7-30 1-24 (25)
90 KOG1029 Endocytic adaptor prot 98.2 4.8E-05 1E-09 57.5 12.0 135 3-143 11-256 (1118)
91 PRK12309 transaldolase/EF-hand 98.2 1.1E-05 2.5E-10 57.3 8.3 58 35-106 328-385 (391)
92 KOG4666 Predicted phosphate ac 98.1 1.8E-05 3.9E-10 54.0 6.5 103 4-108 258-361 (412)
93 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.9E-06 6.4E-11 50.0 1.9 62 75-140 51-112 (113)
94 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.1E-05 2.3E-10 47.6 2.0 66 34-102 47-112 (113)
95 KOG4251 Calcium binding protei 97.6 0.00018 3.9E-09 47.5 5.5 69 39-107 99-169 (362)
96 KOG0046 Ca2+-binding actin-bun 97.6 0.00045 9.6E-09 50.3 7.3 66 78-144 19-85 (627)
97 KOG0046 Ca2+-binding actin-bun 97.6 0.00048 1.1E-08 50.1 7.2 67 5-72 19-88 (627)
98 PF09279 EF-hand_like: Phospho 97.5 0.00076 1.7E-08 37.4 6.0 63 6-69 1-69 (83)
99 PLN02952 phosphoinositide phos 97.4 0.0035 7.6E-08 47.2 10.6 91 54-145 13-111 (599)
100 PF05042 Caleosin: Caleosin re 97.4 0.0018 3.8E-08 40.7 7.4 134 11-145 13-167 (174)
101 smart00054 EFh EF-hand, calciu 97.4 0.00028 6E-09 30.1 3.0 26 7-32 2-27 (29)
102 smart00054 EFh EF-hand, calciu 97.4 0.00029 6.4E-09 30.0 3.0 25 119-143 3-27 (29)
103 KOG4065 Uncharacterized conser 97.4 0.0016 3.6E-08 37.9 6.5 61 82-142 71-143 (144)
104 KOG1707 Predicted Ras related/ 97.2 0.0063 1.4E-07 45.3 9.7 135 5-143 195-376 (625)
105 KOG0035 Ca2+-binding actin-bun 97.2 0.0098 2.1E-07 46.5 10.9 97 5-102 747-848 (890)
106 KOG1265 Phospholipase C [Lipid 97.2 0.029 6.3E-07 43.9 12.8 126 16-148 159-303 (1189)
107 KOG1955 Ral-GTPase effector RA 97.0 0.0024 5.2E-08 46.4 5.6 62 78-143 231-292 (737)
108 KOG0169 Phosphoinositide-speci 96.8 0.03 6.5E-07 42.9 10.0 98 39-143 134-231 (746)
109 KOG3555 Ca2+-binding proteogly 96.4 0.0073 1.6E-07 42.0 4.5 63 78-146 250-312 (434)
110 PF05517 p25-alpha: p25-alpha 96.3 0.064 1.4E-06 33.5 7.9 56 88-143 12-68 (154)
111 PF05517 p25-alpha: p25-alpha 96.2 0.064 1.4E-06 33.5 7.8 64 8-71 2-71 (154)
112 PF09069 EF-hand_3: EF-hand; 96.2 0.088 1.9E-06 29.7 7.3 66 78-146 3-77 (90)
113 KOG3555 Ca2+-binding proteogly 96.1 0.015 3.3E-07 40.5 5.0 100 5-109 211-313 (434)
114 KOG4065 Uncharacterized conser 96.1 0.045 9.8E-07 32.1 6.1 57 9-65 71-141 (144)
115 KOG1029 Endocytic adaptor prot 95.9 0.023 4.9E-07 43.8 5.2 66 3-70 193-258 (1118)
116 KOG0998 Synaptic vesicle prote 95.5 0.018 4E-07 45.4 3.9 132 6-144 130-345 (847)
117 KOG2243 Ca2+ release channel ( 95.4 0.037 8E-07 45.7 5.1 60 82-144 4061-4120(5019)
118 KOG4578 Uncharacterized conser 95.4 0.017 3.7E-07 40.0 2.9 64 43-106 335-398 (421)
119 PLN02952 phosphoinositide phos 95.3 0.41 8.8E-06 36.6 9.9 88 18-106 13-110 (599)
120 PLN02228 Phosphoinositide phos 95.1 0.27 5.8E-06 37.3 8.6 65 78-144 24-92 (567)
121 PLN02222 phosphoinositide phos 95.0 0.22 4.8E-06 37.8 8.0 66 78-145 25-91 (581)
122 KOG0042 Glycerol-3-phosphate d 95.0 0.08 1.7E-06 39.6 5.4 64 78-143 593-656 (680)
123 KOG4347 GTPase-activating prot 94.8 0.064 1.4E-06 40.6 4.6 56 43-100 557-612 (671)
124 KOG4347 GTPase-activating prot 94.8 0.086 1.9E-06 39.9 5.2 77 58-137 535-611 (671)
125 KOG1264 Phospholipase C [Lipid 94.7 0.36 7.8E-06 38.0 8.4 142 5-147 144-296 (1267)
126 PF08726 EFhand_Ca_insen: Ca2+ 94.6 0.026 5.5E-07 30.1 1.6 56 76-141 4-66 (69)
127 KOG4578 Uncharacterized conser 94.5 0.034 7.3E-07 38.6 2.4 61 10-70 338-399 (421)
128 KOG0042 Glycerol-3-phosphate d 94.2 0.26 5.6E-06 37.1 6.4 68 8-75 596-663 (680)
129 PF05042 Caleosin: Caleosin re 94.0 0.61 1.3E-05 29.6 6.9 31 3-33 94-124 (174)
130 PLN02230 phosphoinositide phos 93.9 0.54 1.2E-05 35.9 7.8 69 76-145 27-103 (598)
131 KOG3866 DNA-binding protein of 93.8 0.21 4.5E-06 34.7 5.0 66 81-147 247-327 (442)
132 KOG1955 Ral-GTPase effector RA 93.3 0.35 7.6E-06 35.8 5.8 65 7-73 233-297 (737)
133 cd07313 terB_like_2 tellurium 93.2 0.91 2E-05 26.1 6.6 83 18-102 12-96 (104)
134 KOG2243 Ca2+ release channel ( 92.6 0.31 6.7E-06 40.8 5.0 58 10-68 4062-4119(5019)
135 KOG3866 DNA-binding protein of 92.4 1.3 2.7E-05 31.0 7.2 82 23-104 225-322 (442)
136 KOG0998 Synaptic vesicle prote 92.2 0.26 5.6E-06 39.3 4.2 132 5-143 11-189 (847)
137 PF14513 DAG_kinase_N: Diacylg 92.1 0.9 1.9E-05 27.9 5.6 70 19-90 5-81 (138)
138 PF08976 DUF1880: Domain of un 91.9 0.2 4.4E-06 29.5 2.6 33 113-145 4-36 (118)
139 PLN02223 phosphoinositide phos 91.7 1.6 3.6E-05 32.9 7.6 70 76-146 14-94 (537)
140 PF08414 NADPH_Ox: Respiratory 91.3 0.89 1.9E-05 26.0 4.7 58 80-144 32-92 (100)
141 KOG0039 Ferric reductase, NADH 90.7 0.87 1.9E-05 35.4 5.7 80 58-144 4-89 (646)
142 COG4103 Uncharacterized protei 89.9 3.1 6.8E-05 25.6 7.4 94 10-107 35-130 (148)
143 PF08726 EFhand_Ca_insen: Ca2+ 89.0 0.7 1.5E-05 24.7 2.9 30 2-32 3-32 (69)
144 KOG0035 Ca2+-binding actin-bun 89.0 4.7 0.0001 32.5 8.3 97 42-140 748-848 (890)
145 PF05099 TerB: Tellurite resis 88.6 0.082 1.8E-06 32.2 -0.9 80 18-99 36-117 (140)
146 PF07308 DUF1456: Protein of u 88.3 2.5 5.3E-05 22.5 4.7 47 95-143 14-60 (68)
147 PLN02228 Phosphoinositide phos 88.2 4.1 9E-05 31.2 7.4 65 3-69 22-92 (567)
148 PLN02222 phosphoinositide phos 87.9 3.7 8.1E-05 31.5 7.0 65 3-69 23-90 (581)
149 PF12174 RST: RCD1-SRO-TAF4 (R 87.0 1.6 3.4E-05 23.5 3.5 46 58-107 9-54 (70)
150 KOG2871 Uncharacterized conser 86.6 0.78 1.7E-05 32.8 2.7 64 4-67 308-372 (449)
151 KOG4286 Dystrophin-like protei 86.2 15 0.00033 29.2 9.8 137 3-145 418-581 (966)
152 PLN02230 phosphoinositide phos 85.7 6.9 0.00015 30.3 7.5 66 3-69 27-102 (598)
153 PF09068 EF-hand_2: EF hand; 85.2 6.3 0.00014 23.8 8.2 27 80-106 99-125 (127)
154 PRK09430 djlA Dna-J like membr 85.0 10 0.00022 26.1 10.0 102 17-125 67-175 (267)
155 PF02761 Cbl_N2: CBL proto-onc 83.0 6.2 0.00013 22.0 7.7 70 38-109 4-73 (85)
156 KOG1707 Predicted Ras related/ 82.5 5.5 0.00012 30.6 5.7 60 5-70 315-378 (625)
157 PF08414 NADPH_Ox: Respiratory 82.1 5.1 0.00011 23.0 4.3 14 19-32 42-55 (100)
158 PF02761 Cbl_N2: CBL proto-onc 81.7 7.1 0.00015 21.8 7.6 62 79-143 8-69 (85)
159 PF01023 S_100: S-100/ICaBP ty 81.5 4.3 9.4E-05 19.5 3.4 28 6-33 7-36 (44)
160 PF11116 DUF2624: Protein of u 81.0 7.6 0.00017 21.7 7.7 69 19-87 12-82 (85)
161 KOG2871 Uncharacterized conser 80.1 1.8 3.8E-05 31.1 2.4 63 77-141 308-371 (449)
162 cd07313 terB_like_2 tellurium 79.6 3.1 6.8E-05 23.8 3.1 54 54-107 12-66 (104)
163 PF12174 RST: RCD1-SRO-TAF4 (R 79.5 6.5 0.00014 21.1 4.0 52 19-73 6-57 (70)
164 KOG1265 Phospholipase C [Lipid 79.2 34 0.00074 28.1 9.9 80 24-106 207-299 (1189)
165 PF14513 DAG_kinase_N: Diacylg 76.7 15 0.00032 22.6 6.5 69 56-129 6-82 (138)
166 COG4103 Uncharacterized protei 76.1 6.7 0.00014 24.2 3.7 60 82-143 34-93 (148)
167 PF09069 EF-hand_3: EF-hand; 75.7 12 0.00027 21.2 7.9 64 4-70 2-76 (90)
168 cd07176 terB tellurite resista 75.4 8.5 0.00018 22.1 4.2 79 18-99 15-98 (111)
169 PF08976 DUF1880: Domain of un 75.2 3.9 8.4E-05 24.2 2.5 29 39-67 5-33 (118)
170 TIGR01848 PHA_reg_PhaR polyhyd 74.9 14 0.00031 21.6 4.7 74 49-133 11-86 (107)
171 KOG4004 Matricellular protein 74.8 1.1 2.4E-05 29.2 0.3 46 92-141 202-247 (259)
172 PF07879 PHB_acc_N: PHB/PHA ac 72.6 10 0.00022 19.9 3.4 21 86-106 11-31 (64)
173 KOG3077 Uncharacterized conser 72.2 29 0.00063 23.9 11.3 68 3-70 62-130 (260)
174 PF00404 Dockerin_1: Dockerin 71.2 6.2 0.00013 15.7 2.4 13 89-101 2-14 (21)
175 PF07308 DUF1456: Protein of u 71.1 14 0.0003 19.7 5.4 48 22-69 14-61 (68)
176 KOG3449 60S acidic ribosomal p 71.0 19 0.00041 21.2 6.5 55 8-67 4-58 (112)
177 KOG4004 Matricellular protein 69.2 1.8 3.9E-05 28.3 0.3 47 55-104 202-248 (259)
178 PLN02223 phosphoinositide phos 67.8 40 0.00086 26.0 6.9 66 3-69 14-92 (537)
179 KOG3077 Uncharacterized conser 67.7 37 0.00081 23.4 8.7 83 37-123 60-143 (260)
180 PF11116 DUF2624: Protein of u 65.7 22 0.00047 19.9 5.8 32 93-126 13-44 (85)
181 TIGR01639 P_fal_TIGR01639 Plas 65.4 18 0.00038 18.7 3.9 32 19-50 7-38 (61)
182 PF03979 Sigma70_r1_1: Sigma-7 61.5 13 0.00029 20.4 2.8 34 91-128 18-51 (82)
183 PF01885 PTS_2-RNA: RNA 2'-pho 60.7 24 0.00051 23.0 4.2 38 88-127 26-63 (186)
184 TIGR01550 DOC_P1 death-on-curi 60.0 35 0.00076 20.4 5.4 53 89-143 68-120 (121)
185 COG3763 Uncharacterized protei 58.1 28 0.0006 18.7 4.0 33 18-50 35-67 (71)
186 PF03672 UPF0154: Uncharacteri 58.1 27 0.00058 18.4 4.0 33 18-50 28-60 (64)
187 PF12419 DUF3670: SNF2 Helicas 57.9 26 0.00056 21.6 3.9 51 91-141 80-138 (141)
188 PTZ00373 60S Acidic ribosomal 57.0 39 0.00085 20.0 5.9 52 82-140 7-58 (112)
189 PF09336 Vps4_C: Vps4 C termin 55.2 20 0.00044 18.6 2.7 26 21-46 29-54 (62)
190 KOG4403 Cell surface glycoprot 54.7 46 0.001 24.8 5.1 55 53-107 40-97 (575)
191 KOG4301 Beta-dystrobrevin [Cyt 54.1 29 0.00062 25.0 3.9 60 81-143 113-172 (434)
192 KOG3449 60S acidic ribosomal p 54.0 44 0.00096 19.7 5.7 44 81-126 4-47 (112)
193 KOG0039 Ferric reductase, NADH 53.3 70 0.0015 25.4 6.3 80 22-107 4-90 (646)
194 PF11829 DUF3349: Protein of u 52.9 43 0.00093 19.3 5.4 62 22-83 20-81 (96)
195 KOG1954 Endocytosis/signaling 52.4 29 0.00062 25.6 3.8 57 80-141 446-502 (532)
196 KOG4629 Predicted mechanosensi 51.9 47 0.001 26.6 5.1 56 79-143 405-460 (714)
197 PRK00523 hypothetical protein; 51.2 39 0.00084 18.3 4.0 33 18-50 36-68 (72)
198 KOG1785 Tyrosine kinase negati 50.4 1E+02 0.0022 22.9 7.8 86 17-106 186-274 (563)
199 PRK00819 RNA 2'-phosphotransfe 50.1 53 0.0011 21.3 4.5 16 90-105 29-44 (179)
200 PF13623 SurA_N_2: SurA N-term 49.5 62 0.0013 20.1 8.0 77 56-141 47-144 (145)
201 PF09862 DUF2089: Protein of u 49.5 55 0.0012 19.5 4.6 41 100-143 70-113 (113)
202 PF08461 HTH_12: Ribonuclease 48.2 41 0.00089 17.6 3.3 37 91-129 10-46 (66)
203 KOG1785 Tyrosine kinase negati 47.6 1.2E+02 0.0025 22.7 6.7 101 37-144 171-274 (563)
204 PTZ00373 60S Acidic ribosomal 47.3 60 0.0013 19.3 5.5 52 9-65 7-58 (112)
205 KOG0506 Glutaminase (contains 47.0 1.3E+02 0.0028 23.1 6.7 59 9-67 90-156 (622)
206 TIGR00624 tag DNA-3-methyladen 46.6 75 0.0016 20.6 4.7 103 5-110 53-169 (179)
207 PF06648 DUF1160: Protein of u 46.1 66 0.0014 19.4 4.4 14 57-70 67-80 (122)
208 TIGR03573 WbuX N-acetyl sugar 46.0 75 0.0016 22.8 5.2 15 92-106 300-314 (343)
209 cd07316 terB_like_DjlA N-termi 45.9 55 0.0012 18.5 7.7 82 18-101 12-96 (106)
210 cd05833 Ribosomal_P2 Ribosomal 45.7 63 0.0014 19.1 5.9 53 83-142 6-58 (109)
211 PF08671 SinI: Anti-repressor 45.0 30 0.00065 15.1 2.0 11 133-143 17-27 (30)
212 PF01885 PTS_2-RNA: RNA 2'-pho 44.8 58 0.0013 21.2 4.1 36 16-51 27-62 (186)
213 cd07357 HN_L-whirlin_R2_like S 44.6 55 0.0012 18.1 3.4 38 38-75 16-53 (81)
214 PRK09430 djlA Dna-J like membr 40.5 62 0.0013 22.4 3.9 22 83-104 97-118 (267)
215 KOG2301 Voltage-gated Ca2+ cha 40.2 28 0.00061 30.5 2.6 65 5-70 1417-1485(1592)
216 cd03035 ArsC_Yffb Arsenate Red 39.6 31 0.00068 19.9 2.1 15 132-146 71-85 (105)
217 KOG4301 Beta-dystrobrevin [Cyt 39.5 87 0.0019 22.7 4.5 61 12-73 117-177 (434)
218 PF07499 RuvA_C: RuvA, C-termi 38.9 49 0.0011 15.9 4.3 39 97-141 3-41 (47)
219 PRK01844 hypothetical protein; 38.6 67 0.0015 17.4 3.9 33 18-50 35-67 (72)
220 PF03683 UPF0175: Uncharacteri 38.6 67 0.0014 17.3 3.6 22 96-117 47-68 (76)
221 PF09107 SelB-wing_3: Elongati 38.5 54 0.0012 16.2 3.0 29 19-52 8-36 (50)
222 PF09412 XendoU: Endoribonucle 38.4 81 0.0018 21.9 4.2 15 93-107 117-131 (265)
223 PRK00819 RNA 2'-phosphotransfe 38.4 1E+02 0.0022 20.0 4.5 42 17-61 29-70 (179)
224 CHL00091 apcE phycobillisome l 37.7 2E+02 0.0043 23.9 6.6 37 114-150 351-392 (877)
225 cd07177 terB_like tellurium re 36.6 78 0.0017 17.5 5.4 78 18-100 12-94 (104)
226 PF09373 PMBR: Pseudomurein-bi 36.6 45 0.00097 14.7 2.0 14 92-105 2-15 (33)
227 PF02459 Adeno_terminal: Adeno 36.1 1.2E+02 0.0027 23.4 5.0 48 80-129 457-504 (548)
228 COG1059 Thermostable 8-oxoguan 35.5 1.3E+02 0.0029 19.8 5.2 46 65-111 42-87 (210)
229 TIGR03853 matur_matur probable 35.3 81 0.0018 17.3 5.7 47 98-146 5-58 (77)
230 PLN00138 large subunit ribosom 35.2 1E+02 0.0022 18.4 5.8 51 83-140 6-56 (113)
231 KOG0506 Glutaminase (contains 35.1 1.1E+02 0.0023 23.5 4.5 62 81-144 89-158 (622)
232 PF12486 DUF3702: ImpA domain 33.0 79 0.0017 19.8 3.2 26 8-33 72-97 (148)
233 TIGR02675 tape_meas_nterm tape 32.1 41 0.00088 18.2 1.7 16 91-106 27-42 (75)
234 KOG2301 Voltage-gated Ca2+ cha 31.9 58 0.0013 28.8 3.2 70 76-145 1415-1485(1592)
235 PF08006 DUF1700: Protein of u 31.9 67 0.0014 20.6 2.9 29 22-50 1-29 (181)
236 KOG4070 Putative signal transd 31.6 1.4E+02 0.003 18.9 5.0 83 5-87 12-107 (180)
237 PF04558 tRNA_synt_1c_R1: Glut 31.6 52 0.0011 20.9 2.3 11 40-50 84-94 (164)
238 COG5069 SAC6 Ca2+-binding acti 31.4 1.6E+02 0.0036 22.6 5.0 76 9-88 489-564 (612)
239 cd06404 PB1_aPKC PB1 domain is 31.3 1E+02 0.0022 17.2 4.5 18 77-94 58-75 (83)
240 PF04433 SWIRM: SWIRM domain; 30.7 35 0.00076 18.8 1.3 23 46-68 42-64 (86)
241 TIGR03573 WbuX N-acetyl sugar 30.1 1.9E+02 0.0042 20.8 5.2 59 33-104 284-342 (343)
242 COG5562 Phage envelope protein 30.0 53 0.0011 20.2 2.0 27 120-146 76-102 (137)
243 PF00427 PBS_linker_poly: Phyc 29.5 1.4E+02 0.003 18.3 8.0 49 55-105 42-97 (131)
244 KOG1954 Endocytosis/signaling 29.1 1.5E+02 0.0032 22.1 4.4 26 77-102 476-501 (532)
245 PF09312 SurA_N: SurA N-termin 27.9 1E+02 0.0022 18.2 3.0 12 114-125 68-79 (118)
246 cd02977 ArsC_family Arsenate R 27.6 1.3E+02 0.0027 17.2 4.8 51 93-146 34-87 (105)
247 PF10281 Ish1: Putative stress 27.6 73 0.0016 14.4 3.6 15 97-111 6-20 (38)
248 smart00513 SAP Putative DNA-bi 27.1 71 0.0015 14.1 4.4 25 94-118 3-27 (35)
249 KOG0871 Class 2 transcription 26.2 1.8E+02 0.0038 18.3 4.6 75 16-111 7-83 (156)
250 COG2818 Tag 3-methyladenine DN 25.9 79 0.0017 20.7 2.4 43 5-47 55-97 (188)
251 PF12872 OST-HTH: OST-HTH/LOTU 25.3 1.1E+02 0.0025 15.9 5.3 14 19-32 21-34 (74)
252 cd04411 Ribosomal_P1_P2_L12p R 25.3 1.5E+02 0.0033 17.3 6.1 42 95-143 17-58 (105)
253 PF07492 Trehalase_Ca-bi: Neut 25.2 22 0.00048 15.5 -0.1 17 120-136 3-19 (30)
254 cd07894 Adenylation_RNA_ligase 25.0 2.1E+02 0.0045 20.8 4.6 41 13-53 133-183 (342)
255 PF02037 SAP: SAP domain; Int 24.7 82 0.0018 14.0 4.3 26 94-119 3-28 (35)
256 PF14848 HU-DNA_bdg: DNA-bindi 24.5 1.7E+02 0.0036 17.5 4.2 32 92-125 26-57 (124)
257 PF13075 DUF3939: Protein of u 23.8 40 0.00087 20.8 0.8 18 128-145 37-54 (140)
258 PF02885 Glycos_trans_3N: Glyc 23.5 1.2E+02 0.0027 15.6 6.1 14 37-50 14-27 (66)
259 KOG0869 CCAAT-binding factor, 23.4 2.1E+02 0.0045 18.2 7.7 28 84-111 76-103 (168)
260 PF10678 DUF2492: Protein of u 23.3 1.5E+02 0.0032 16.4 5.7 47 98-146 7-60 (78)
261 KOG0455 Homoserine dehydrogena 23.1 1.6E+02 0.0036 20.5 3.5 33 6-38 179-211 (364)
262 PF09066 B2-adapt-app_C: Beta2 22.9 75 0.0016 18.5 1.8 19 91-109 3-21 (114)
263 PF10437 Lip_prot_lig_C: Bacte 22.8 1.5E+02 0.0032 16.2 4.3 42 97-142 44-86 (86)
264 PF14771 DUF4476: Domain of un 22.6 1.6E+02 0.0034 16.5 9.1 13 57-69 39-51 (95)
265 PF12631 GTPase_Cys_C: Catalyt 22.5 1.4E+02 0.003 15.9 3.1 10 38-47 60-69 (73)
266 COG1460 Uncharacterized protei 22.2 1.9E+02 0.0041 17.3 3.4 28 96-125 81-108 (114)
267 KOG4286 Dystrophin-like protei 22.2 4.6E+02 0.0099 21.7 6.9 96 6-104 471-578 (966)
268 PF11422 IBP39: Initiator bind 22.1 2.4E+02 0.0051 18.4 8.2 67 44-111 22-92 (181)
269 TIGR00135 gatC glutamyl-tRNA(G 22.1 1.6E+02 0.0035 16.5 4.0 24 96-121 2-25 (93)
270 KOG0455 Homoserine dehydrogena 22.0 1.3E+02 0.0029 20.9 3.0 33 79-111 179-211 (364)
271 PF13121 DUF3976: Domain of un 21.9 1E+02 0.0022 14.1 1.7 21 14-34 7-27 (41)
272 PF06226 DUF1007: Protein of u 21.8 1.3E+02 0.0028 20.0 2.9 25 83-107 55-79 (212)
273 PF08355 EF_assoc_1: EF hand a 21.6 90 0.002 17.0 1.8 17 126-142 12-28 (76)
274 PHA02105 hypothetical protein 21.5 1.4E+02 0.0029 15.4 3.5 47 21-67 4-55 (68)
275 COG4359 Uncharacterized conser 21.5 2.6E+02 0.0056 18.6 6.8 78 55-147 11-90 (220)
276 PF03732 Retrotrans_gag: Retro 21.1 1.6E+02 0.0034 15.9 4.4 48 57-107 26-73 (96)
277 PF11848 DUF3368: Domain of un 20.9 1.2E+02 0.0026 14.6 3.9 32 19-50 15-47 (48)
278 PF06384 ICAT: Beta-catenin-in 20.8 1.7E+02 0.0036 16.2 3.0 23 25-47 20-42 (78)
279 PF07531 TAFH: NHR1 homology t 20.5 79 0.0017 18.2 1.5 15 130-144 38-52 (96)
280 PF10841 DUF2644: Protein of u 20.4 1.5E+02 0.0032 15.4 2.6 20 52-71 5-24 (60)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=8.4e-29 Score=151.25 Aligned_cols=139 Identities=41% Similarity=0.753 Sum_probs=132.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAF 84 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 84 (151)
.+|+++|..+|++++|.|+..++..+++.+|..++..++..++..++. +++.|+|++|+.++........+.+.+..+|
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999 8899999999999999888888899999999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 85 NVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 85 ~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
+.||.+++|+|+..++..+++.+|... ++++++.++..++++++|.|+|++|.+.+...+
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~~lge~~--~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLKSLGERL--SDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HHhCCCCCceecHHHHHHHHHhhcccC--CHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 999999999999999999999999998 999999999999999999999999999877643
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=5e-27 Score=145.71 Aligned_cols=140 Identities=49% Similarity=0.868 Sum_probs=130.4
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCCh----HHH
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDE----EED 79 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~----~~~ 79 (151)
...++++|..+|.+++|.|+..++..+++.+|..++..++..++..+|.+++|.|++.+|+.++......... ...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999877654433 458
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
++.+|+.+|.+++|+||.+||+.+|..+|... +.+++..+++.+|.+++|.|+|++|+..+...
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKL--TDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 99999999999999999999999999999999 99999999999999999999999999998753
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=2.8e-24 Score=134.56 Aligned_cols=140 Identities=35% Similarity=0.620 Sum_probs=128.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAF 84 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 84 (151)
.++..+|..+|.+++|.|+..+|..++..++...+...+..++..+|.+++|.|++.+|+.++............++.+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 57888999999999999999999999999988888999999999999999999999999998877655556667899999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 85 NVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 85 ~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
+.+|.+++|.|+.+||..++...|... +..++..++..++.+++|.|++++|..++.+.+
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGETI--TDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 999999999999999999999998877 999999999999999999999999999998744
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.9e-24 Score=127.96 Aligned_cols=139 Identities=33% Similarity=0.593 Sum_probs=133.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAF 84 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 84 (151)
.+++..|..+|.+++|+|+..++..+++++|..+.+.++..+...+|.++.|.|+|++|...+...+....+.+.+..+|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999988888888999999999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 85 NVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 85 ~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
+.+|.+++|.||..+|..+.+.+|..+ +++++..++..+|.+++|.|+-++|...+++.
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLgenl--tD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGENL--TDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCccc--cHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 999999999999999999999999998 99999999999999999999999999998764
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=1.1e-23 Score=130.62 Aligned_cols=138 Identities=45% Similarity=0.814 Sum_probs=125.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAF 84 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 84 (151)
..+...|..+|.+++|.|+.++|..++..++..++...+..++..+|.+++|.|++++|+.++............+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 56778999999999999999999999999988888999999999999999999999999999877654445567789999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 85 NVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 85 ~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
+.+|.+++|.|+.++|..++...|... +.+++..++..+|.+++|.|+|++|+.++..
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNLGEKL--TDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHHCCCC--CHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999999998776 9999999999999999999999999988764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.88 E-value=2.2e-20 Score=111.62 Aligned_cols=136 Identities=29% Similarity=0.549 Sum_probs=128.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAF 84 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 84 (151)
.+++++|..+|.|.+|.|+.++++..+.++|...+.+++..++... .|.|+|.-|+.++...+....+.+.+..+|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999764 789999999999999888888899999999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 85 NVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 85 ~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
+.||.+++|.|..+.++++|...|... +.++++.++..+-.+..|.++|..|...+....
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt~gDr~--~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG~ 167 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTTMGDRF--TDEEVDEMYREAPIDKKGNFDYKAFTYIITHGE 167 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHHhcccC--CHHHHHHHHHhCCcccCCceeHHHHHHHHHccc
Confidence 999999999999999999999999988 999999999999999999999999999998543
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-19 Score=114.67 Aligned_cols=132 Identities=28% Similarity=0.452 Sum_probs=122.1
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHH
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNLGIY-IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKE 82 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 82 (151)
...+...|...|.+..|.|+.+|++++|...... .+.+-|..++.++|.+..|.|++.||..++..+ ..++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 4578899999999999999999999999866544 567889999999999999999999999999987 67999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
+|+.+|.|++|.|+..||++.|..+|..+ +.+-.+.++++++....|.|.+++|++.+..
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L--spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRL--SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCC--CHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999888999999999998764
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=1.6e-19 Score=106.24 Aligned_cols=137 Identities=32% Similarity=0.573 Sum_probs=122.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCceeHHHHHHHHHHHhccC--ChHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVN--GDGYVDINEFGSLYQTIMDER--DEEEDM 80 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~~--~~~~~~ 80 (151)
.+++++|..||..++|.|+..+.-.+|+.+|..++..++...+..+..+ +-.+++|++|+.++..+...+ ...+.+
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edf 90 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDF 90 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHH
Confidence 6789999999999999999999999999999999999999998888766 457899999999998776543 456778
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..-++.||++++|+|...|++.+|.++|... +++|+..+..-. .|.+|-|+|+.|+..+..
T Consensus 91 vegLrvFDkeg~G~i~~aeLRhvLttlGekl--~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 91 VEGLRVFDKEGNGTIMGAELRHVLTTLGEKL--TEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHhhcccCCcceeHHHHHHHHHHHHhhc--cHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 8899999999999999999999999999998 999999998776 578899999999987643
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-19 Score=114.38 Aligned_cols=138 Identities=29% Similarity=0.507 Sum_probs=113.4
Q ss_pred HHHHHHHHhhccC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCc-eeHHHHHHHHHHHhccCChHHHHHH
Q 037200 5 TELRRVFQMFDRN-GDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGY-VDINEFGSLYQTIMDERDEEEDMKE 82 (151)
Q Consensus 5 ~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~ 82 (151)
..+...|.++|.+ +.|.++.++|..+.... ...-..+++..++.+++|. |+|++|+..+...........+++.
T Consensus 33 ~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~f 108 (187)
T KOG0034|consen 33 ERLYERFKKLDRNNGDGYLTKEEFLSIPELA----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRF 108 (187)
T ss_pred HHHHHHHHHhccccccCccCHHHHHHHHHHh----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHH
Confidence 3566789999999 99999999999988432 2345668888888888888 9999999999887776666779999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCC-CCCCCHH----HHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLGL-KQGRTVE----DCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~~-~~~~~~~----~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
+|+.||.+++|+|+.+|+.+++..+-. ....+++ -++.++..+|.++||+|+++||..++.+.+
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 999999999999999999999998743 2210133 345578899999999999999999988764
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=5.5e-19 Score=111.80 Aligned_cols=142 Identities=25% Similarity=0.382 Sum_probs=119.5
Q ss_pred hhHHHHHHHHhhccC-CCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHH
Q 037200 3 MDTELRRVFQMFDRN-GDGKITRKELSDSLKNLGI-YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDM 80 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 80 (151)
+..++..+++.|-.+ ++|.++.++|+.++..... .-+...+..+|+.+|.+++|.|+|.||+..+... .+....+.+
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eekl 102 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEKL 102 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHHh
Confidence 567888999888665 6999999999999999875 4566778899999999999999999999999774 446677888
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHc----CC-----CCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASL----GL-----KQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~----~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
..+|+.+|.+++|+||++|+..++... |. ...-...-+..+|+.+|.|.||.||++||.......
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 999999999999999999999999875 32 111145667889999999999999999999987653
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.79 E-value=1.2e-17 Score=114.38 Aligned_cols=134 Identities=23% Similarity=0.381 Sum_probs=123.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIY-IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEA 83 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 83 (151)
..+..+|..+|.+++|.++..++.+.+..+... .....++.+++..|.+.+|+++|.+|...+... +..+..+
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~ 87 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRI 87 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHH
Confidence 567899999999999999999999999998776 677888999999999999999999999988664 3568899
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 84 FNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 84 f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
|+..|.+++|.|..+|+.+.++.+|..+ ++++++++++.+|+++++.|+++||..++.-.+
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l--~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQL--SDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCcc--CHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999999999999987655
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.1e-14 Score=95.96 Aligned_cols=134 Identities=23% Similarity=0.357 Sum_probs=109.3
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCCh----HHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGI-YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDE----EED 79 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~----~~~ 79 (151)
.+-++.|+.+|.|++|.++.+||-.+|..-.. ....-.|.+.+...|+|++|.|+++||+.=+......... ...
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~E 242 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTE 242 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccccc
Confidence 45678899999999999999999998864332 2345567888899999999999999999877665432111 122
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHH
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQ 140 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 140 (151)
-...+...|+|++|+++.+|+...+..-+... ...++.+++...|.|+||++|++|.+.
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~--A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDH--AKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccH--HHHHHHHHhhhhccCccccccHHHHhh
Confidence 34677889999999999999998887777766 889999999999999999999999875
No 13
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-13 Score=87.96 Aligned_cols=91 Identities=26% Similarity=0.474 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAF 84 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 84 (151)
..|+.+|+.+|+|++|.|+..|+.++|..+|+.++.+-.+.+++++|..++|.|.|++|++.|..+ ..+.++|
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~F 196 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEAF 196 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHHH
Confidence 568888999999999999999999999999999999999999999987778899999999998887 5678899
Q ss_pred HhhcCCCCCcc--cHHHHHH
Q 037200 85 NVFDQNGDGYI--TVEELRS 102 (151)
Q Consensus 85 ~~~D~~~~g~i--s~~e~~~ 102 (151)
+..|.+..|.| +.++|.+
T Consensus 197 r~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 197 RRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHhccccceeEEEeHHHHHH
Confidence 99998888855 4455544
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8e-14 Score=93.21 Aligned_cols=141 Identities=22% Similarity=0.280 Sum_probs=115.0
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC---------
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER--------- 74 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~--------- 74 (151)
...+..++.++|.+++|.|+..+++..+..........+..+-|..+|.+.+|.|+|+++..........+
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 46788899999999999999999999998776666677788889999999999999999988776421100
Q ss_pred ----ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 75 ----DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 75 ----~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
.....-+..|+..|.|++|.+|++||..++.....+. +..-.+..-+...|.|+||+|+++||+.-+-..
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~-M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPH-MKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcch-HHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 1122446789999999999999999999998876553 355667778899999999999999999876544
No 15
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.55 E-value=1.7e-13 Score=85.11 Aligned_cols=104 Identities=28% Similarity=0.512 Sum_probs=91.5
Q ss_pred chhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC-----CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCCh
Q 037200 2 IMDTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYI-----PDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDE 76 (151)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 76 (151)
++...+..++...|.+++|.|+..+|..++....... +..++..+|+.+|.+++|.|+..++..++..+ ..+..
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~~~ 119 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL-GEKLT 119 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCcCC
Confidence 5788999999999999999999999999998765443 34599999999999999999999999999885 44555
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 77 EEDMKEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
...+..+++.+|.+++|.|+.++|.+++..
T Consensus 120 ~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 120 DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 788999999999999999999999998853
No 16
>PLN02964 phosphatidylserine decarboxylase
Probab=99.53 E-value=4.8e-13 Score=98.57 Aligned_cols=97 Identities=23% Similarity=0.395 Sum_probs=86.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLG-IYIPDNE---LVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDM 80 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 80 (151)
.+++++|..+|++++|.+ +..+++.+| ..++..+ +..++..+|.+++|.|+++||+.++..+ ......+.+
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHH
Confidence 567889999999999997 888899999 4777776 8999999999999999999999999864 445667789
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
..+|+.+|.+++|+|+.+||..++..
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999999999988
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.52 E-value=1.4e-13 Score=73.69 Aligned_cols=64 Identities=42% Similarity=0.766 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCC--CCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 037200 79 DMKEAFNVFDQNGDGYITVEELRSVLASLGLKQG--RTVEDCKLMIKKVDVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 79 ~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~--~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 142 (151)
+++.+|+.+|.+++|+|+.+||..++..++.... ...+.++.++..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999987640 133455556999999999999999999875
No 18
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=4.1e-13 Score=85.28 Aligned_cols=102 Identities=28% Similarity=0.387 Sum_probs=88.2
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc----------C
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE----------R 74 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~----------~ 74 (151)
.-...+|+.+|.+++|.|+..||..++..+......+.+...|+.+|.+++|.|+++|++.++.....- .
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 345678999999999999999999999888777788888899999999999999999999988765432 1
Q ss_pred ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 75 DEEEDMKEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
.+......+|+.+|.|++|.||.+||.....+
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 25678899999999999999999999987754
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.50 E-value=1.2e-12 Score=80.50 Aligned_cols=103 Identities=22% Similarity=0.451 Sum_probs=92.7
Q ss_pred chhHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHH
Q 037200 2 IMDTELRRVFQMFDRNGDGKITRKELSDSLKNL-GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDM 80 (151)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 80 (151)
++...+.++|..+|. +++.|+..+|..++... ....+++++..+|+.+|.+++|.|+..++...+.. .....+.+.+
T Consensus 53 ~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~-lge~~~deev 130 (160)
T COG5126 53 PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS-LGERLSDEEV 130 (160)
T ss_pred CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHh-hcccCCHHHH
Confidence 577889999999999 99999999999999765 45667999999999999999999999999999976 5667788899
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
..+++.+|.+++|.|++++|.+.+..
T Consensus 131 ~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 131 EKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999998754
No 20
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=2.7e-12 Score=80.22 Aligned_cols=103 Identities=23% Similarity=0.447 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNL-GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMK 81 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 81 (151)
+...+..+|..+|.+++|.|+..+|..++... ........+..+|..+|.+++|.|+..+|..++... ........+.
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~ 129 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQ 129 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHH
Confidence 45678899999999999999999999987653 344567789999999999999999999999999764 3345667789
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
.+|..+|.+++|.|+.++|..++..
T Consensus 130 ~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 130 EMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999998864
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=4.2e-13 Score=71.83 Aligned_cols=62 Identities=35% Similarity=0.712 Sum_probs=50.8
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHhhCCCCCCceeHHHHHHHH
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDN----ELVQMIEKIDVNGDGYVDINEFGSLY 67 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (151)
+++++|+.+|.+++|.|+.+|+..++..++...+.. .+..+++.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999988766543 44555888888888888888887654
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.48 E-value=2.7e-13 Score=76.20 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-cCCCCCCCH-HHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 78 EDMKEAFNVFDQ-NGDGYITVEELRSVLAS-LGLKQGRTV-EDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 78 ~~~~~~f~~~D~-~~~g~is~~e~~~~l~~-~~~~~~~~~-~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
..+..+|+.||+ +++|+|+..||+.+++. +|..+ +. ++++.+++.+|.|++|.|+|+||+.++.+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l--s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL--KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc--cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 457889999999 99999999999999999 88665 77 899999999999999999999999987653
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1.5e-12 Score=73.22 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcc-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037200 5 TELRRVFQMFDR-NGDGKITRKELSDSLKN-LGIYIPD-NELVQMIEKIDVNGDGYVDINEFGSLYQTIM 71 (151)
Q Consensus 5 ~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (151)
..+..+|+.||+ +++|+|+..+++.++.. ++..++. .++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 467899999999 99999999999999999 8877777 8999999999999999999999999987763
No 24
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.42 E-value=8.5e-12 Score=86.96 Aligned_cols=139 Identities=19% Similarity=0.349 Sum_probs=105.4
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC--------
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNL-GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER-------- 74 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-------- 74 (151)
.+++...|+.+|...+|+|+...+..++... +..++= ...--+....+.+|.+.|.+....+.......
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPW--r~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPW--RLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcH--HHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 3577889999999999999999999988764 433331 11222233455678899988877664321111
Q ss_pred ---ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 75 ---DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGL--KQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 75 ---~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
.....+..+|+.+|.|+.|.||.+||...++-++. +..++.+++..+.+.+|.++||.|++.||+++++-
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 11345788999999999999999999999987633 34458999999999999999999999999999863
No 25
>PTZ00184 calmodulin; Provisional
Probab=99.42 E-value=1.2e-11 Score=76.46 Aligned_cols=102 Identities=22% Similarity=0.407 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNL-GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMK 81 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 81 (151)
+...+..+|..+|.+++|.|+.++|..++... ........+..+|..+|.+++|.|+..+|..++... ....+...+.
T Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~ 123 (149)
T PTZ00184 45 TEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVD 123 (149)
T ss_pred CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHH
Confidence 34578899999999999999999999988754 333456678999999999999999999999998764 3344667788
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHH
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLA 105 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~ 105 (151)
.+|..+|.+++|.|+++||..++.
T Consensus 124 ~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 124 EMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHhcCCCCCCcCcHHHHHHHHh
Confidence 999999999999999999988774
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=3.4e-12 Score=71.81 Aligned_cols=65 Identities=22% Similarity=0.444 Sum_probs=59.1
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNVFD-QNGDG-YITVEELRSVLAS-----LGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~~D-~~~~g-~is~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..+..+|+.+| .+++| +|+.++|+.+|+. +|... +.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~--~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK--EQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45789999998 79999 6999999999999 78766 8899999999999999999999999998764
No 27
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.38 E-value=6.6e-12 Score=75.02 Aligned_cols=103 Identities=23% Similarity=0.486 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHH---
Q 037200 43 LVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCK--- 119 (151)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~--- 119 (151)
-+++...+..++.|.++|++|+.++.......+..-.+..+|+.+|-+++++|...++.+.+..+.-.. ++.+++.
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e-Ls~eEv~~i~ 151 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE-LSDEEVELIC 151 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc-CCHHHHHHHH
Confidence 345666777899999999999999988766666677889999999999999999999999998874431 2666654
Q ss_pred -HHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 120 -LMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 120 -~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
.++..+|.++||++++.+|...+...+
T Consensus 152 ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 152 EKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 467788999999999999999877654
No 28
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.9e-11 Score=77.65 Aligned_cols=102 Identities=25% Similarity=0.466 Sum_probs=86.2
Q ss_pred HHHHHHHhhccCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCCh------H
Q 037200 6 ELRRVFQMFDRNGDGK-ITRKELSDSLKNLGIYIPDN-ELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDE------E 77 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~------~ 77 (151)
...+++..++.+++|. |+.++|...+.......... .++-+|+.||.+++|.|+.+++.+++......... .
T Consensus 67 ~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~ 146 (187)
T KOG0034|consen 67 LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLE 146 (187)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHH
Confidence 3457889999998888 99999999998876655554 89999999999999999999999999888764333 3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
..+...|..+|.+++|+||.+||..++...
T Consensus 147 ~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 345678999999999999999999998754
No 29
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=1.1e-11 Score=69.76 Aligned_cols=66 Identities=29% Similarity=0.531 Sum_probs=60.7
Q ss_pred HHHHHHHHhhc-cCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQMFD-RNGDG-KITRKELSDSLKN-----LGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
..+.++|+.+| ++++| .|+..+++.+++. ++...++.++..+++.+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46789999998 79999 5999999999999 8888899999999999999999999999999888765
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.33 E-value=1.1e-11 Score=63.59 Aligned_cols=52 Identities=40% Similarity=0.736 Sum_probs=48.3
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 91 GDGYITVEELRSVLASLGLK-QGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 91 ~~g~is~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
++|.|+.++|..++..+|.. . +++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~--s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL--SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS--CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC--CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888888 7 9999999999999999999999999998863
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=2.4e-11 Score=68.41 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 78 EDMKEAFNVFDQ-NG-DGYITVEELRSVLAS---LGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 78 ~~~~~~f~~~D~-~~-~g~is~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
..+..+|..||. ++ +|+|+.+||+.+++. +|... +.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 356789999998 67 899999999999974 57766 99999999999999999999999999987653
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.30 E-value=2.5e-11 Score=69.40 Aligned_cols=67 Identities=22% Similarity=0.448 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 78 EDMKEAFNVFDQ-NG-DGYITVEELRSVLAS-----LGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 78 ~~~~~~f~~~D~-~~-~g~is~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
..+..+|..+|. ++ +|.|+.+|+..+++. +|... +.+++..++..+|.+++|.|+|++|+.++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~--s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK--DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc--cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 567889999997 87 699999999999986 35555 889999999999999999999999999887543
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=4.4e-11 Score=68.17 Aligned_cols=66 Identities=18% Similarity=0.355 Sum_probs=55.4
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 78 EDMKEAFNVFD-QNGDG-YITVEELRSVLASL-----GLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 78 ~~~~~~f~~~D-~~~~g-~is~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
..+..+|+.|| .+++| +||..||..++... +... +..++..+++.+|.+++|.|+|+||+.++.+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~--~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK--DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc--CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45678899999 67998 59999999999763 2233 77899999999999999999999999988653
No 34
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.27 E-value=5.3e-11 Score=67.80 Aligned_cols=67 Identities=24% Similarity=0.497 Sum_probs=57.0
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-cCCCC--CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNVFD-QNGDG-YITVEELRSVLAS-LGLKQ--GRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~~D-~~~~g-~is~~e~~~~l~~-~~~~~--~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..+..+|..+| .+++| +|+..|+..+|+. +|... ..+.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56889999997 99999 5999999999986 54321 237889999999999999999999999998764
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=99.25 E-value=1.9e-10 Score=85.14 Aligned_cols=100 Identities=18% Similarity=0.368 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh-ccCChHH--HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHH
Q 037200 40 DNELVQMIEKIDVNGDGYVDINEFGSLYQTIM-DERDEEE--DMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVE 116 (151)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~ 116 (151)
..++.+.|..+|.+++|.+ +..++..+. ..+...+ .+..+|+.+|.+++|.|+.+||..++..++... +++
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~--seE 215 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLV--AAN 215 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCC--CHH
Confidence 3567788999999999986 333443332 1222222 378999999999999999999999999988665 889
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 117 DCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 117 ~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
++..+|+.+|.+++|.|+++||...+...
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999999999999999999998874
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=1e-10 Score=66.67 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=56.8
Q ss_pred HHHHHHHHhhc-cCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037200 5 TELRRVFQMFD-RNGDG-KITRKELSDSLKN-L----GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIM 71 (151)
Q Consensus 5 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (151)
..+.++|+.|| ++++| .|+..|++.++.. + ....+..++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 35667799999 68998 5999999999976 2 3445778999999999999999999999999997763
No 37
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.25 E-value=1.4e-10 Score=81.25 Aligned_cols=128 Identities=19% Similarity=0.314 Sum_probs=102.2
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----hCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHH
Q 037200 10 VFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEK----IDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFN 85 (151)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 85 (151)
.|..+|++++|.|+++++...-... ++.--+.++|+. .-...+|+|+|++|+.++..... +.....++..|+
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~t~~SleYwFr 358 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KDTPASLEYWFR 358 (493)
T ss_pred HHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc-CCCccchhhhee
Confidence 3889999999999999998866543 457778889982 33456799999999999988644 555667899999
Q ss_pred hhcCCCCCcccHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHH
Q 037200 86 VFDQNGDGYITVEELRSVLASL-------GLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQM 141 (151)
Q Consensus 86 ~~D~~~~g~is~~e~~~~l~~~-------~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 141 (151)
.+|.+++|.|+.+|+..+.... |.....-++.+.+++..+.+...++||+++|...
T Consensus 359 clDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 9999999999999998888653 3332224666777888888888999999999874
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.25 E-value=1e-10 Score=66.61 Aligned_cols=67 Identities=33% Similarity=0.543 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhc-cCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 4 DTELRRVFQMFD-RNGDG-KITRKELSDSLKN-LG----IYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 4 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
...+.++|+.+| .+++| .|+..++..+++. ++ ..++..++..+++.+|.+++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 367899999997 99999 5999999999975 43 35688999999999999999999999999988765
No 39
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.24 E-value=1.2e-10 Score=65.60 Aligned_cols=65 Identities=23% Similarity=0.527 Sum_probs=58.3
Q ss_pred HHHHHHHhhcc-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 6 ELRRVFQMFDR-NG-DGKITRKELSDSLK---NLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 6 ~~~~~f~~~d~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
.+-.+|+.+|. ++ +|+|+..||+.++. .+|...+.+++..+++.+|.+++|.|+|++|+.++..+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46678999997 66 89999999999996 36888999999999999999999999999999888765
No 40
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=9.6e-11 Score=62.73 Aligned_cols=60 Identities=30% Similarity=0.446 Sum_probs=54.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
+.+|..+|.+++|.|+.+|+..++...|. +.+++..++..++.+++|.|++++|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~----~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL----PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC----CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46899999999999999999999998764 7788999999999999999999999988754
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=1.2e-10 Score=66.62 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhcc-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 4 DTELRRVFQMFDR-NG-DGKITRKELSDSLKN-----LGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 4 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
...+..+|..+|. ++ +|.|+..++..++.. ++...+..++..++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568899999997 87 699999999999986 4667889999999999999999999999999888654
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=1.4e-10 Score=66.58 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 77 EEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
...+..+|..+|.+++|.|+.+++..+++..|. +.+++..++..++.+++|.|++++|+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~----~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL----PQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC----CHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 456889999999999999999999999998653 778999999999999999999999998875
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=1.1e-10 Score=62.52 Aligned_cols=61 Identities=31% Similarity=0.523 Sum_probs=55.5
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 8 RRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
+++|..+|++++|.|+..++..++..++. +.+++..++..++.+++|.|++++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998874 78899999999999999999999999988664
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.22 E-value=1.4e-10 Score=59.50 Aligned_cols=52 Identities=40% Similarity=0.765 Sum_probs=47.9
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037200 18 GDGKITRKELSDSLKNLGIY-IPDNELVQMIEKIDVNGDGYVDINEFGSLYQT 69 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (151)
++|.|+.++|+.++..+|.. ++..++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999988754
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.21 E-value=1.9e-10 Score=60.25 Aligned_cols=61 Identities=44% Similarity=0.839 Sum_probs=56.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 142 (151)
+..+|..+|.+++|.|+.+++..+++..+.+. +.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL--SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 46789999999999999999999999998877 89999999999999999999999998875
No 46
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=8.2e-10 Score=67.16 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=89.4
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKN-LGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMK 81 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 81 (151)
...++.++...+|+++.|.|+..+|...+.. ++..-+.+++...|+.+|-+.+|.|++.+|..+...+ ...-....+.
T Consensus 67 ~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~ 145 (172)
T KOG0028|consen 67 KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELM 145 (172)
T ss_pred chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHH
Confidence 3567788999999999999999999998754 5666699999999999999999999999999988775 3334567788
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
.+...+|.+++|-|+.++|..+++.
T Consensus 146 eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 146 EMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999998864
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.20 E-value=1.4e-10 Score=65.51 Aligned_cols=68 Identities=22% Similarity=0.401 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcC--CCCCcccHHHHHHHHHH-cCCCC--CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 78 EDMKEAFNVFDQ--NGDGYITVEELRSVLAS-LGLKQ--GRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 78 ~~~~~~f~~~D~--~~~g~is~~e~~~~l~~-~~~~~--~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
..+..+|..+|. +++|.|+.++|..+++. +|... ..+..++..++..++.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 567889999999 89999999999999986 45432 1368999999999999999999999999988653
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.18 E-value=3.4e-10 Score=64.98 Aligned_cols=64 Identities=27% Similarity=0.508 Sum_probs=56.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
..+.++|..+|.+++|.|+..++..+++..+ .+..++..++..+|.+++|.|++++|+.++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 5678889999999999999999999999865 678889999999999999999999999888665
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=4.2e-10 Score=58.94 Aligned_cols=61 Identities=43% Similarity=0.803 Sum_probs=55.1
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037200 7 LRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLY 67 (151)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (151)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999997654
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.14 E-value=4.6e-10 Score=66.18 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 77 EEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
...+..+|..+|.|++|.||.+|+..+. ... .+..+..++..+|.+++|.||++||...+.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~--~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDP--NEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccc--hHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 3568899999999999999999999876 222 5677888999999999999999999999843
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.14 E-value=5.5e-10 Score=62.97 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=54.7
Q ss_pred HHHHHHHHh-hcCCCCC-cccHHHHHHHHHHcCCC---CCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNV-FDQNGDG-YITVEELRSVLASLGLK---QGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~-~D~~~~g-~is~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..+..+|+. +|.+++| +||.+||..++.....+ ...+..++..+++.+|.+++|.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 456789999 6777866 99999999999886321 1126788999999999999999999999998764
No 52
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=5.2e-10 Score=63.20 Aligned_cols=66 Identities=26% Similarity=0.467 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcc--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQMFDR--NGDGKITRKELSDSLKN-LGIY----IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
..+..+|..+|+ +++|.|+..++..++.. ++.. .+..++..++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 467888999999 89999999999999976 4433 458899999999999999999999999988765
No 53
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.12 E-value=4.2e-10 Score=70.88 Aligned_cols=81 Identities=31% Similarity=0.532 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHH
Q 037200 60 INEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFK 139 (151)
Q Consensus 60 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~ 139 (151)
|.+|..+-...+ ..+..+|+.+|.+.+|+|++.|++.+|..+|.+. |--.+..++...|.|.+|+||+.+|+
T Consensus 87 yteF~eFsrkqI------k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ--THL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 87 YTEFSEFSRKQI------KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ--THLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred hhhhhHHHHHHH------HHHHHHHHHhcccccccccHHHHHHHHHHhCCch--hhHHHHHHHHHhhcccccchhHHHHH
Confidence 566664444432 4578899999999999999999999999999998 88899999999999999999999999
Q ss_pred HHHhcCCCC
Q 037200 140 QMMKGGGFA 148 (151)
Q Consensus 140 ~~l~~~~~~ 148 (151)
-.++.....
T Consensus 159 LIfrkaaag 167 (244)
T KOG0041|consen 159 LIFRKAAAG 167 (244)
T ss_pred HHHHHHhcc
Confidence 988765443
No 54
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.11 E-value=2.1e-09 Score=75.02 Aligned_cols=135 Identities=22% Similarity=0.383 Sum_probs=95.6
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHc------CCC----C-----CHHHHHH--HHHhhCCCCCCceeHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNL------GIY----I-----PDNELVQ--MIEKIDVNGDGYVDINEFGS 65 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~~----~-----~~~~~~~--~~~~~d~~~~~~i~~~ef~~ 65 (151)
+.+.+.-+|+++|.|++|.|+++||..+.... +.. . -..++.. ...-+..++++.+++++|..
T Consensus 231 p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 231 PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLK 310 (489)
T ss_pred CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHH
Confidence 44566778999999999999999999976431 110 0 0112222 23345889999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHH-HHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 66 LYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVE-DCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
++..+. .+.++.-|..+|+...|.|+..+|..++-........... .+..+-+.+..+ +..||++||.+++.
T Consensus 311 F~e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 311 FQENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 998873 3667788999999999999999999999877533200111 344455556444 55699999888754
No 55
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.11 E-value=8.6e-10 Score=71.75 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNL---GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQT 69 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (151)
+.+.+..+|.+.|.|.+++|+..++++.+..- ....+.++.+.-|+..|++++|.|+|++|..-+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 45789999999999999999999999988753 22234455667889999999999999999866543
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=1.3e-09 Score=61.47 Aligned_cols=66 Identities=27% Similarity=0.425 Sum_probs=56.3
Q ss_pred HHHHHHHHh-hccCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQM-FDRNGDG-KITRKELSDSLKNL-----GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
..|..+|+. +|.+++| .|+.+||+.++..- +......++..+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467788999 7777865 99999999999875 334567899999999999999999999999988776
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=99.10 E-value=7.4e-10 Score=57.91 Aligned_cols=61 Identities=26% Similarity=0.510 Sum_probs=56.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCC-CCCCCHHHHHHHHHHhcCCCC-CceeHHHHHHHHhc
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASLGL-KQGRTVEDCKLMIKKVDVDGD-GMVNYNEFKQMMKG 144 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~d~~~~-g~is~~ef~~~l~~ 144 (151)
.+|..||.++.|.|...++..+|++.+. .. ++++++.+.+.+|+++. |.|+++.|+..++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p--~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP--EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC--cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 55 89999999999999997 99999999998874
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.04 E-value=9.3e-09 Score=80.96 Aligned_cols=129 Identities=26% Similarity=0.550 Sum_probs=100.5
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCC-------HHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc-CCh
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIP-------DNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE-RDE 76 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~-~~~ 76 (151)
.++.-+|..||++.+|.++..+|..+|+++|+.++ .+.++.++...|++.+|+|+..+|..++...-.. -.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 45667899999999999999999999999998763 4579999999999999999999999998765432 223
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHh----cCC----CCCceeHHHHHHHHh
Q 037200 77 EEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKV----DVD----GDGMVNYNEFKQMMK 143 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~----d~~----~~g~is~~ef~~~l~ 143 (151)
...+..+|+.+|. +..+|+.+++.+-| +.+++.-.+..+ ++. ..+.+.|.+|...|-
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~~~l---------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELYQNL---------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHHhcC---------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 4589999999998 88899999987755 444444444333 332 234588999987764
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.01 E-value=2.3e-09 Score=60.49 Aligned_cols=65 Identities=14% Similarity=0.290 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HcCCCCCCC----HHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNVFDQN--GDGYITVEELRSVLA-SLGLKQGRT----VEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~~D~~--~~g~is~~e~~~~l~-~~~~~~~~~----~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..+...|..++.. ++|.|+.+||..++. .+|... + .+++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~--t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL--KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh--ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567789999866 478999999999997 455443 5 899999999999999999999999998764
No 60
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.99 E-value=1.6e-08 Score=70.28 Aligned_cols=127 Identities=23% Similarity=0.360 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKE 82 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 82 (151)
..+....+|...|.|.+|.++.++|+..+.. .+.++-.+|+..|.+.||.|...|.-+.+... ...-+.+.+..
T Consensus 49 ~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k 122 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAK 122 (463)
T ss_pred chHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHH
Confidence 3567788999999999999999999999984 46778899999999999999999999999775 33456677888
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHH------hcCCCCCceeHHHHHHHH
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKK------VDVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~------~d~~~~g~is~~ef~~~l 142 (151)
+|+..|+++++.|+.+|++..+.-. +++.+..++.. +|..++..|+ ++|...-
T Consensus 123 ~~e~~d~~g~~~I~~~e~rd~~ll~------p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e 181 (463)
T KOG0036|consen 123 FFEHMDKDGKATIDLEEWRDHLLLY------PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLE 181 (463)
T ss_pred HHHHhccCCCeeeccHHHHhhhhcC------ChhHHHHHHHhhhhheEEEccccccCC-cchHHHH
Confidence 9999999999999999999998655 33444444322 3555666665 5555443
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=98.98 E-value=5.2e-09 Score=54.78 Aligned_cols=61 Identities=23% Similarity=0.455 Sum_probs=56.3
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CceeHHHHHHHHHH
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLGI-YIPDNELVQMIEKIDVNGD-GYVDINEFGSLYQT 69 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~~ 69 (151)
.+|..+|+++.|.|...++..+|+.++. .+++.+++.+.+.+|+++. |.|+++.|...+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999988 8899999999999999988 99999999988864
No 62
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.97 E-value=3.4e-08 Score=73.37 Aligned_cols=142 Identities=17% Similarity=0.365 Sum_probs=120.9
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKE 82 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 82 (151)
...|+..+|+.+|++++|.++..+...++..++..+....+..+|+..+..+++.+...+|..+.......+ .+..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp----ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP----EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----hHHH
Confidence 357899999999999999999999999999999999999999999999888899999999999887764432 6777
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCC----CCCceeHHHHHHHHhcCCCCC
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVD----GDGMVNYNEFKQMMKGGGFAA 149 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~~~~~~ 149 (151)
+|..+- .+.++++.+++..++.......+.+.+.+..+++.+... ..+.++++.|..+|.......
T Consensus 210 ~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 210 LFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred HHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 888885 448999999999999998665566889999999888543 356699999999998766544
No 63
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.93 E-value=1e-08 Score=60.46 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 037200 38 IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLA 105 (151)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~ 105 (151)
.-...+...|..+|.+++|.|+..|+..+. + ......+..+|..+|.|++|.||.+||...+.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 345678889999999999999999998766 1 22345667899999999999999999998883
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.91 E-value=1.1e-08 Score=57.70 Aligned_cols=66 Identities=20% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHHHHhhccC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037200 6 ELRRVFQMFDRN--GDGKITRKELSDSLK-NLGIYIP----DNELVQMIEKIDVNGDGYVDINEFGSLYQTIM 71 (151)
Q Consensus 6 ~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (151)
.+..+|+.++.. ++|.|+..++..++. .++..++ ..++..+++.+|.+++|.|+|++|+.++....
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 466789998865 489999999999997 4555555 89999999999999999999999999887653
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.8e-08 Score=69.62 Aligned_cols=131 Identities=17% Similarity=0.276 Sum_probs=79.2
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHH
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLGIYI---PDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFN 85 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 85 (151)
--|..+|+..+|.|+..+|..++-...... -...+++.-..+... +..|+++||..++..+..- ..+..+..
T Consensus 322 lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l----~dfd~Al~ 396 (489)
T KOG2643|consen 322 LEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL----NDFDIALR 396 (489)
T ss_pred HHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh----hHHHHHHH
Confidence 346666666667777777766655432111 112334444444433 3447777777666554321 22333333
Q ss_pred hhcCCCCCcccHHHHHHHHHH-cCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCCC
Q 037200 86 VFDQNGDGYITVEELRSVLAS-LGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGGF 147 (151)
Q Consensus 86 ~~D~~~~g~is~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 147 (151)
.+- ...+.|+..+|.++... .|..+ ++..++-+|..+|.|+||.++++||+..+++.-.
T Consensus 397 fy~-~Ag~~i~~~~f~raa~~vtGveL--SdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 397 FYH-MAGASIDEKTFQRAAKVVTGVEL--SDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred HHH-HcCCCCCHHHHHHHHHHhcCccc--ccceeeeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 331 23456777777666654 36666 7677788899999999999999999999986443
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.72 E-value=2.8e-07 Score=51.69 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=54.3
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKN-----LGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIM 71 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (151)
.+-.+|+.+. .+.+.++..||+.++.. +.....+..+..++...|.++||.|+|.||+.++..+.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4667899998 45679999999999864 34445678899999999999999999999999998763
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.72 E-value=3.4e-08 Score=43.56 Aligned_cols=25 Identities=48% Similarity=0.880 Sum_probs=12.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHH
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLA 105 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~ 105 (151)
+.+|+.+|+|++|+|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 3445555555555555555555444
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.71 E-value=3.3e-08 Score=43.63 Aligned_cols=27 Identities=41% Similarity=0.829 Sum_probs=17.6
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHH
Q 037200 7 LRRVFQMFDRNGDGKITRKELSDSLKN 33 (151)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 33 (151)
++++|+.+|+|++|.|+..||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 556666666666666666666666654
No 69
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.67 E-value=2e-06 Score=61.56 Aligned_cols=103 Identities=21% Similarity=0.449 Sum_probs=76.7
Q ss_pred hHHHHHHHHhh---ccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH-HHhhCCCCCCceeHHHHHHHHHHHhccCChHH
Q 037200 4 DTELRRVFQMF---DRNGDGKITRKELSDSLKNL-GIYIPDNELVQM-IEKIDVNGDGYVDINEFGSLYQTIMDERDEEE 78 (151)
Q Consensus 4 ~~~~~~~f~~~---d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~-~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 78 (151)
+.++..+|..+ +.++...++.++|......+ +..-..+++.++ -...|..+||.|+|+||..+-..+ +.+..
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l---C~pDa 108 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL---CAPDA 108 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc---cCchH
Confidence 45667776654 45788899999998855443 444444455444 455678889999999998776554 44567
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCC
Q 037200 79 DMKEAFNVFDQNGDGYITVEELRSVLASLGL 109 (151)
Q Consensus 79 ~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~ 109 (151)
....+|+.||..++|.+|.+++..++.....
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 7889999999999999999999999987643
No 70
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.62 E-value=4.7e-07 Score=55.02 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=79.6
Q ss_pred chhHHHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHH
Q 037200 2 IMDTELRRVFQMFDRNGDGKITRKELSDSLKN-LGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDM 80 (151)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 80 (151)
++++.|..++. ...|.|+..-|..++.. +.-.-+++.|...|+.+|.++.|.|.-+.+..++.. ...+-..+.+
T Consensus 65 ~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV 139 (171)
T KOG0031|consen 65 ASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEV 139 (171)
T ss_pred CCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH-hcccCCHHHH
Confidence 45666666663 45788999999988865 444456778889999999999999998888888866 6677778889
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHH
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLA 105 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~ 105 (151)
..+|+.+-.+..|.+++..|..++.
T Consensus 140 ~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 140 DEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999888899999999988886
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.60 E-value=8e-07 Score=49.84 Aligned_cols=64 Identities=20% Similarity=0.398 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASL-----GLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..+..+|..|. .+.+.++..||..++..- .... ....++.+++..|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~--d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQN--DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34567899997 445799999999999653 3333 6788999999999999999999999988754
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.60 E-value=4.6e-07 Score=44.84 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 21 KITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
.++..|++.+|+.++..+....+..+|+.+|.+++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999998888653
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.55 E-value=1.9e-07 Score=41.95 Aligned_cols=29 Identities=59% Similarity=1.145 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH-HcC
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLA-SLG 108 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~-~~~ 108 (151)
++.+|+.+|.+++|+|+.+||..+++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 454
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.52 E-value=2.2e-07 Score=41.77 Aligned_cols=30 Identities=50% Similarity=0.878 Sum_probs=25.1
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHH-HcC
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLK-NLG 35 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 35 (151)
+++.+|+.+|.+++|.|+.+||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 554
No 75
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.52 E-value=1.2e-06 Score=62.61 Aligned_cols=127 Identities=16% Similarity=0.297 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHcCC------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChH
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNLGI------YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEE 77 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 77 (151)
+.....+|+.||+.++|.++++++..++.+... .+..+-|+..| .......++|.+|.+++.....
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~~----- 178 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQL----- 178 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHHH-----
Confidence 345567899999999999999999999887532 34455555543 3334567899999999988643
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHH-HHHhcCCCCCceeHHHHHH
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLM-IKKVDVDGDGMVNYNEFKQ 140 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~-~~~~d~~~~g~is~~ef~~ 140 (151)
+..+.+|+..|+.++|+||.-+|..++-..-.+. ....++.. ......+...++|+..|..
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~--lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL--LTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc--CCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 5578899999999999999999999998765554 33334443 3334444455566655543
No 76
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.50 E-value=2.2e-06 Score=49.67 Aligned_cols=64 Identities=25% Similarity=0.475 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 75 DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
........+|...+ .++|.|+.++...++...|. +.+.+..+|...|.+++|+++.+||+-++.
T Consensus 7 ~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L----~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGL----PRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTS----SHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCC----CHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 34567788999987 46899999999999998876 568899999999999999999999987654
No 77
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.50 E-value=4.9e-06 Score=49.84 Aligned_cols=104 Identities=14% Similarity=0.263 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHcCCCC-CCCHH
Q 037200 40 DNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQN--GDGYITVEELRSVLASLGLKQ-GRTVE 116 (151)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~is~~e~~~~l~~~~~~~-~~~~~ 116 (151)
..+++++|..+|..+++.|++.+--..++. +...+....+......++.+ +-..|+.++|.-++..+.... ..+.+
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 478899999999999999999998888776 45556667777788877666 457899999999998874432 22667
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 117 DCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 117 ~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
+.-.-++.+|++++|.|...|+...|.-
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 7777889999999999999999988764
No 78
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.48 E-value=2.8e-06 Score=51.33 Aligned_cols=99 Identities=16% Similarity=0.346 Sum_probs=77.6
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHH----HHHHH
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLGIY-IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEE----DMKEA 83 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~----~~~~~ 83 (151)
++...+..++.|.++..+|..++.-+.-. +..-.+...|+.+|-++++.|.-.+....+..+....-+.+ .+..+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 56677899999999999999988755322 33445677899999999999999999888877655443333 34667
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHc
Q 037200 84 FNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 84 f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
....|.+++|+++..||..++...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 888899999999999999988654
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.46 E-value=1.5e-06 Score=43.07 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 94 YITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 94 ~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
++|..|+..+|+.+++.. ++..+..+|+.+|..++|.+.-+||..+++
T Consensus 1 kmsf~Evk~lLk~~NI~~--~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM--DDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc--CHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 367778888888887776 778888888888888888888888877765
No 80
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.41 E-value=2.8e-06 Score=60.30 Aligned_cols=131 Identities=21% Similarity=0.364 Sum_probs=96.9
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHH--HH---cC---------CCCCHHHHHH---HHHhhCCCCCCceeHHHHHHHHH
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSL--KN---LG---------IYIPDNELVQ---MIEKIDVNGDGYVDINEFGSLYQ 68 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l--~~---~~---------~~~~~~~~~~---~~~~~d~~~~~~i~~~ef~~~~~ 68 (151)
.+.++|...++.++|.|+..++.... .. +. .--+-+.... .|...|.+.+|.|+-++......
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 46788999999999999999987622 21 11 1112222233 37788999999999998866654
Q ss_pred HHhccCChHHHHHHHHHhh----cCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 037200 69 TIMDERDEEEDMKEAFNVF----DQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 69 ~~~~~~~~~~~~~~~f~~~----D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 142 (151)
... ...-+.++|... -...+|.++..+|..++-++.... +..-++.+|+.+|.+++|.++..|...++
T Consensus 306 ~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~--t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 306 HTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD--TPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred cch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC--CccchhhheeeeeccCCCcccHHHHHHHH
Confidence 433 346678888833 344689999999999999887766 77789999999999999999988766554
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.40 E-value=4.9e-06 Score=48.21 Aligned_cols=63 Identities=29% Similarity=0.529 Sum_probs=53.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
..+..+|...++ ++|.|+-.+...++...+ ++.+.+..+|...|.+++|.++++||+.++...
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 567788988875 689999999999998776 678999999999999999999999999888664
No 82
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.39 E-value=8.3e-06 Score=51.90 Aligned_cols=97 Identities=21% Similarity=0.351 Sum_probs=71.5
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC-ChHHHHHHH-
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER-DEEEDMKEA- 83 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~- 83 (151)
....+|..+|.+.+|+|+.-|++.++.++|..-+.--++.+....|-+.+|.|+|.+|+-++....... .....+..+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LA 179 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLA 179 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHH
Confidence 455789999999999999999999999999888888889999999999999999999988776654321 112222222
Q ss_pred -HHhhcCCCCCcccHHHHHH
Q 037200 84 -FNVFDQNGDGYITVEELRS 102 (151)
Q Consensus 84 -f~~~D~~~~g~is~~e~~~ 102 (151)
....|..+-|......|-+
T Consensus 180 r~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 180 RLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HhcccchhhhhhhhHHHHHH
Confidence 2336777777665555533
No 83
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.37 E-value=3.9e-06 Score=46.77 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCC----CCCceeHHHHHHHHhcCCCCC
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVD----GDGMVNYNEFKQMMKGGGFAA 149 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~~~~~~ 149 (151)
+..+|..+.. +.+.||.++|..+|.........+.+.+..++..+.++ ..+.+|+++|..+|.+.....
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~ 74 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSI 74 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCC
Confidence 5778999955 78999999999999887555444899999999998655 478999999999998876544
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.35 E-value=1.4e-06 Score=69.36 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHH-----HHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 79 DMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVE-----DCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 79 ~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~-----~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
.+..+|+.||.+++|.++..+|..+|+..|+.+++.++ ++..++..+|++.+|+|+..+|++++.++.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 56788999999999999999999999999998855555 899999999999999999999999988754
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.35 E-value=3.4e-06 Score=59.90 Aligned_cols=54 Identities=26% Similarity=0.497 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 76 EEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
....+..+|+.+|.+++|.|+.+||.. +..+|..+|.+++|.|+++||...+..
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 355678999999999999999999842 467999999999999999999998865
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.33 E-value=1.1e-06 Score=37.29 Aligned_cols=23 Identities=48% Similarity=0.900 Sum_probs=12.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q 037200 81 KEAFNVFDQNGDGYITVEELRSV 103 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~ 103 (151)
+.+|+.+|.|++|.||.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34555555555555555555543
No 87
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.28 E-value=2.8e-06 Score=57.79 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHH
Q 037200 40 DNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCK 119 (151)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~ 119 (151)
.+.+..+|..+|.+++|.++|.+.+..+..+...+.....++.+|+.|+.+.+|.++..+|..+++..... ..-.+-
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv---~~l~v~ 334 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV---EVLRVP 334 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc---ceeecc
Confidence 35567889999999999999999988887766666677889999999999999999999999888765322 222345
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 120 LMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 120 ~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
.+|...+...+|+|++++|.++.-..+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCc
Confidence 689999999999999999999876543
No 88
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.26 E-value=6.5e-06 Score=58.34 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh---ccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 39 PDNELVQMIEKIDVNGDGYVDINEFGSLYQTIM---DERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
.+..+..+|+.+|++++|.|+.+||...+..+. ...-....+-.+-+.+|-|++|+|+.+||.+.++-.
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 355677888888888888888888888775543 334556667777888888888888888888888654
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.24 E-value=2.1e-06 Score=36.42 Aligned_cols=24 Identities=46% Similarity=0.790 Sum_probs=17.0
Q ss_pred HHHHHHhhccCCCCcccHHHHHHH
Q 037200 7 LRRVFQMFDRNGDGKITRKELSDS 30 (151)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~ 30 (151)
|+.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356677777777777777777664
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=4.8e-05 Score=57.49 Aligned_cols=135 Identities=29% Similarity=0.440 Sum_probs=105.0
Q ss_pred hhHHHHHHHHhhc--cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC------
Q 037200 3 MDTELRRVFQMFD--RNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER------ 74 (151)
Q Consensus 3 ~~~~~~~~f~~~d--~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~------ 74 (151)
|+.+-.+-+..|+ +.+.|+|+-.+-++++-..+ ++...+..+|...|.|+||+++..||.-.|....-.-
T Consensus 11 T~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP 88 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLP 88 (1118)
T ss_pred chHHHHHHHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCC
Confidence 3333344444444 35789999999999888776 5677889999999999999999999988875432100
Q ss_pred --------------------------------------------------------------------------------
Q 037200 75 -------------------------------------------------------------------------------- 74 (151)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (151)
T Consensus 89 ~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ 168 (1118)
T KOG1029|consen 89 PVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHD 168 (1118)
T ss_pred CCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -----------------------ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCC
Q 037200 75 -----------------------DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDG 131 (151)
Q Consensus 75 -----------------------~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g 131 (151)
...-....+|...|+...|++|-..-+.+|...+.+. ..+.+|+..-|.|+||
T Consensus 169 ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq----~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 169 SSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQ----NQLAHIWTLSDVDGDG 244 (1118)
T ss_pred cchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCch----hhHhhheeeeccCCCC
Confidence 0011457889999999999999999999998777654 6789999999999999
Q ss_pred ceeHHHHHHHHh
Q 037200 132 MVNYNEFKQMMK 143 (151)
Q Consensus 132 ~is~~ef~~~l~ 143 (151)
+++-+||+-.+.
T Consensus 245 kL~~dEfilam~ 256 (1118)
T KOG1029|consen 245 KLSADEFILAMH 256 (1118)
T ss_pred cccHHHHHHHHH
Confidence 999999987653
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=57.27 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 35 GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 35 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
+..+....+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||...+..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5567788899999999999999999999942 467899999999999999999998864
No 92
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.07 E-value=1.8e-05 Score=54.04 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHH
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNL-GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKE 82 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 82 (151)
...+...|..||.+++|.++..+....+.-+ +...+...++..|.+++...||.+.-.++.-++..... ...-.+..
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 3567889999999999999999988877765 55677888999999999999999998887666655433 23345678
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcC
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLG 108 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~ 108 (151)
+|...+...+|+|+.++|+++....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 89999999999999999999987654
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.03 E-value=2.9e-06 Score=49.98 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHH
Q 037200 75 DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQ 140 (151)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 140 (151)
.....+...|..+|.|++|.|+..|+..+...+ .. .+.-+..++..+|.|+||.||..||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~--~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MP--PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--ST--TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hh--hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345677888999999999999999998887655 22 555678899999999999999999875
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.84 E-value=1.1e-05 Score=47.63 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHH
Q 037200 34 LGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRS 102 (151)
Q Consensus 34 ~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~ 102 (151)
.....-...+...|..+|.+++|.++..|+..+-..+ .....-++..++.+|.|++|.||..|+..
T Consensus 47 ~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 47 SSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3344556778888999999999999988887766543 22233467788899999999999998764
No 95
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.64 E-value=0.00018 Score=47.52 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC--ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 39 PDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER--DEEEDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
+...+..+|+..|.+.++.|+-.+..+.+....... .....-+..|+..|++++|.|+++|+.--+.+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 355688899999999999999999998887654321 122344567899999999999999997655443
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.58 E-value=0.00045 Score=50.31 Aligned_cols=66 Identities=33% Similarity=0.522 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC-CCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQ-GRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
..+...|...| +++|+|+..++...+...+... ....++++.+....+.+.+|.|++++|+..+.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45678899999 9999999999999999876653 235889999999999999999999999996543
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.56 E-value=0.00048 Score=50.13 Aligned_cols=67 Identities=25% Similarity=0.516 Sum_probs=57.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhc
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYI---PDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMD 72 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 72 (151)
..+++-|...| +++|+++..++..++.+.+... ..++++.+....+.+.+|.|+|++|+..+..+..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 45677899999 9999999999999999876543 4789999999999999999999999998877643
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.47 E-value=0.00076 Score=37.43 Aligned_cols=63 Identities=17% Similarity=0.363 Sum_probs=41.5
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHH
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKNLGI--YIPDNELVQMIEKIDVN----GDGYVDINEFGSLYQT 69 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~ 69 (151)
+|..+|..+.. +.+.|+.++|..+|..-.. ..+..++..++..+..+ ..+.++.+.|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 35677777754 6777888888887765433 24677777777776433 2466777777766644
No 99
>PLN02952 phosphoinositide phospholipase C
Probab=97.44 E-value=0.0035 Score=47.17 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=65.0
Q ss_pred CCCceeHHHHHHHHHHHhc-cCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcC-----
Q 037200 54 GDGYVDINEFGSLYQTIMD-ERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDV----- 127 (151)
Q Consensus 54 ~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~----- 127 (151)
+.|.++|++|..+...+.. .......+..+|..+.. +.+.+|.++|..+|.........+.+.+..++..+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3578999999887776532 22356788999999954 4478999999999988755433477777777665421
Q ss_pred --CCCCceeHHHHHHHHhcC
Q 037200 128 --DGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 128 --~~~g~is~~ef~~~l~~~ 145 (151)
...+.+++++|..+|.+.
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 123458999999999764
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.41 E-value=0.0018 Score=40.71 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=84.9
Q ss_pred HHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC---CCCceeHHHHHHHHHHHhc-------------cC
Q 037200 11 FQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVN---GDGYVDINEFGSLYQTIMD-------------ER 74 (151)
Q Consensus 11 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~~~i~~~ef~~~~~~~~~-------------~~ 74 (151)
..=+|+|++|.|.+.|-...++.+|....-..+..++-..... ..+-+.-.-|--.+..... .+
T Consensus 13 vaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGr 92 (174)
T PF05042_consen 13 VAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGR 92 (174)
T ss_pred hceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCc
Confidence 3448999999999999999999999886655544443322110 1111111111111111000 01
Q ss_pred ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCC-----CCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 75 DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQG-----RTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~-----~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
-..+.+..+|..++..+.+.+|..|+..+++.-..... -+.-|...++..+ .+++|.+..+.....+.++
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYDGS 167 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYDGS 167 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcchH
Confidence 12567899999999888899999999999987422210 1445566666665 6779999999888776554
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00028 Score=30.06 Aligned_cols=26 Identities=50% Similarity=0.944 Sum_probs=16.6
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHH
Q 037200 7 LRRVFQMFDRNGDGKITRKELSDSLK 32 (151)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~ 32 (151)
++.+|..+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666666666666666666654
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.40 E-value=0.00029 Score=29.98 Aligned_cols=25 Identities=40% Similarity=0.805 Sum_probs=14.2
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 119 KLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 119 ~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
..+|+.+|.+++|.|++.+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555556666666555544
No 103
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0016 Score=37.93 Aligned_cols=61 Identities=21% Similarity=0.420 Sum_probs=45.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHc------CC-CCC-CCHHHHHHHHH----HhcCCCCCceeHHHHHHHH
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASL------GL-KQG-RTVEDCKLMIK----KVDVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~------~~-~~~-~~~~~~~~~~~----~~d~~~~g~is~~ef~~~l 142 (151)
--|.+.|.+++++|+--|+.+.+.-. |. +.+ .++.++..++. .-|.++||.|+|-||+...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 45889999999999999999888654 22 222 25666666554 4577899999999998754
No 104
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.23 E-value=0.0063 Score=45.29 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=88.1
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHhhC---CCC--CCceeHHHHHHHHHHHhccC----
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLK-NLGIYIPDNELVQMIEKID---VNG--DGYVDINEFGSLYQTIMDER---- 74 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~~d---~~~--~~~i~~~ef~~~~~~~~~~~---- 74 (151)
+.+.++|..-|.+.+|.++-.|+-..=. +++..+...++..+-...+ +++ +..++..-|+.+........
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 6788999999999999999999887443 3566666666554443332 221 34566666776654433211
Q ss_pred -------------------------------------ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHH
Q 037200 75 -------------------------------------DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVED 117 (151)
Q Consensus 75 -------------------------------------~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~ 117 (151)
.-.+.+..+|..+|.+++|.++-.|+...+..++........+
T Consensus 275 tW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~ 354 (625)
T KOG1707|consen 275 TWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPY 354 (625)
T ss_pred hhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcc
Confidence 0134678899999999999999999999999885543111111
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 118 CKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 118 ~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
.+. --.+..|.+++..|+..+.
T Consensus 355 ~~~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 355 KDS----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred ccc----ceecccceeehhhHHHHHH
Confidence 010 1122678888888877643
No 105
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.21 E-value=0.0098 Score=46.47 Aligned_cols=97 Identities=25% Similarity=0.313 Sum_probs=79.5
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPD-----NELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEED 79 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 79 (151)
.++...|+.++....|.++.+++..++..+|..... .++.++....|+..-|.+++.+|...+............
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r 826 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELR 826 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHH
Confidence 567888999999999999999999999999988764 234455555566656889999999999888777777888
Q ss_pred HHHHHHhhcCCCCCcccHHHHHH
Q 037200 80 MKEAFNVFDQNGDGYITVEELRS 102 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~ 102 (151)
+...|+.+-+.+. +|..+|+..
T Consensus 827 ~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 827 AILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHcchh-HHHHHHHHh
Confidence 8999999966554 788888877
No 106
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.16 E-value=0.029 Score=43.91 Aligned_cols=126 Identities=16% Similarity=0.265 Sum_probs=89.2
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC--CC-----ceeHHHHHHHHHHHhccCChHHHHHHHHHhhc
Q 037200 16 RNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNG--DG-----YVDINEFGSLYQTIMDERDEEEDMKEAFNVFD 88 (151)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~--~~-----~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 88 (151)
-+..|.|..+.+...+.+ ...+..+...+..+.... +. ..+++.|..++..+... ..+..+|..+.
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----PEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----hhHHHHHHHhc
Confidence 366788888777776653 233355666666554322 12 24567777777665333 67899999999
Q ss_pred CCCCCcccHHHHHHHHHHcCCCC--------CCCHHHHHHHHHHhcCCC----CCceeHHHHHHHHhcCCCC
Q 037200 89 QNGDGYITVEELRSVLASLGLKQ--------GRTVEDCKLMIKKVDVDG----DGMVNYNEFKQMMKGGGFA 148 (151)
Q Consensus 89 ~~~~g~is~~e~~~~l~~~~~~~--------~~~~~~~~~~~~~~d~~~----~g~is~~ef~~~l~~~~~~ 148 (151)
.++.-++|.++|..++..-.... ......+..+++.|.++. .|.|+-+.|+.++.+....
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdEn~ 303 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDENA 303 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCccc
Confidence 88889999999999997642111 136788999999998875 6899999999999984433
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.0024 Score=46.44 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
+....-|+.+-.|-.|+|+-.--+.++.+-.+ ...|+.+||+..|.+.||.+++.||++.+.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSkl----pi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL----PIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhccC----chHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 45566799999999999999999999987765 558999999999999999999999999875
No 108
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.78 E-value=0.03 Score=42.94 Aligned_cols=98 Identities=12% Similarity=0.231 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHH
Q 037200 39 PDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDC 118 (151)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~ 118 (151)
....+..+|...|.+.+|.+++.+-..++..+.. ......+...|+..+...++.+...++.++....... . ++
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r---p--ev 207 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR---P--EV 207 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC---c--hH
Confidence 4566888999999999999999999888877543 3455677888998888899999999999999877653 2 67
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 119 KLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 119 ~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
..+|..+-.+ .+.++.+++.+++.
T Consensus 208 ~~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 208 YFLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHHHhCC-CCccCHHHHHHHHH
Confidence 7777777444 77888888777765
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.41 E-value=0.0073 Score=42.04 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
..+-.+|..+|.|.+|.++..|+..+-..- .+.-+..+|...|...||.||-.||...+....
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccC------chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 456778888888888888888876654322 556677788888888888888888888776654
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.27 E-value=0.064 Score=33.51 Aligned_cols=56 Identities=13% Similarity=0.316 Sum_probs=35.9
Q ss_pred cCCCCCcccHHHHHHHHHHcCCC-CCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 88 DQNGDGYITVEELRSVLASLGLK-QGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 88 D~~~~g~is~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
.......++-..|.++++..++- ..++...+.-+|..+-..+...|+|++|..+|.
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 34455677777788888777552 234777777777777555556688888877765
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.25 E-value=0.064 Score=33.53 Aligned_cols=64 Identities=16% Similarity=0.362 Sum_probs=48.7
Q ss_pred HHHHHhh---ccCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHh
Q 037200 8 RRVFQMF---DRNGDGKITRKELSDSLKNLGI---YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIM 71 (151)
Q Consensus 8 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (151)
+.+|..| -......|+-..|..+++..++ .++..++.-+|..+-..+...|+|++|..++..+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4555555 3566788999999999998643 57889999999998766667899999999887653
No 112
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.18 E-value=0.088 Score=29.69 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHc-------CCC--CCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASL-------GLK--QGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~-------~~~--~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
++++.+|+.+ .|++|.++...|..+|+.. |.. .+-.+..++..|... .....|+.++|+.++...+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 5678899999 6889999999999988763 222 122566677777776 3556799999999998763
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.14 E-value=0.015 Score=40.50 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=72.1
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLG---IYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMK 81 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 81 (151)
..+...|..+-.+.++......+...-..+. ...-+.++..+|..+|.+.++.++..|...+-.. ....-++
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHH
Confidence 4566677776665555554444444333221 2245778999999999999999999987554432 2345678
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCC
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASLGL 109 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~~~ 109 (151)
.+|..+|..++|.||-+|+-..+..-+.
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCCC
Confidence 9999999999999999999999987763
No 114
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.045 Score=32.10 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=37.6
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcC------C----CCCHHHHHHHH----HhhCCCCCCceeHHHHHH
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLG------I----YIPDNELVQMI----EKIDVNGDGYVDINEFGS 65 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~------~----~~~~~~~~~~~----~~~d~~~~~~i~~~ef~~ 65 (151)
..|.+.|-+++|.++=-|+..++.... . ..++.++..+. +.-|.+++|.|+|-||..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 457888899999999999998887532 1 12344444433 333666777777777753
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.023 Score=43.85 Aligned_cols=66 Identities=26% Similarity=0.491 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
+..+...+|+.+|+...|+++-.+-+.+|...+ ++...+..+|..-|.|+||.++.+||+-.+...
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 345678999999999999999999999998766 567788999999999999999999998776543
No 116
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.018 Score=45.43 Aligned_cols=132 Identities=22% Similarity=0.383 Sum_probs=95.3
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc------------
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE------------ 73 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~------------ 73 (151)
....+|+...++ +|.++-...+-++... .++...+.++|...|.+.+|.++..+|...+......
T Consensus 130 ky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~~~ 206 (847)
T KOG0998|consen 130 KYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPSRL 206 (847)
T ss_pred HHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCCCCccC
Confidence 344556666544 6777766666666533 3455666677777788888888888887665332210
Q ss_pred ------------------------------------------------------------------------CChHHHHH
Q 037200 74 ------------------------------------------------------------------------RDEEEDMK 81 (151)
Q Consensus 74 ------------------------------------------------------------------------~~~~~~~~ 81 (151)
......+.
T Consensus 207 p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d~~~~~ 286 (847)
T KOG0998|consen 207 PPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSDKQKYS 286 (847)
T ss_pred CcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHHHHHHH
Confidence 01123556
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
.+|...|.+++|.|+..+...++...|. +...+.+++...+.+++|.+++.+|.-.+..
T Consensus 287 ~if~q~d~~~dG~I~s~~~~~~f~~~gl----~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 287 KIFSQVDKDNDGSISSNEARNIFLPFGL----SKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHhccccCCCcccccccccccccCCC----ChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 7899999999999999999999988655 6688999999999999999999988766543
No 117
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.44 E-value=0.037 Score=45.67 Aligned_cols=60 Identities=17% Similarity=0.458 Sum_probs=50.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHhc
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 144 (151)
.-|+.+|+++.|.||..+|.+.+..-.. . +.++++-+.+....+.+...+|++|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~-y--tqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKH-Y--TQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcccc-c--hhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 3488899999999999999999874433 2 7788999999999999999999999987764
No 118
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.41 E-value=0.017 Score=40.03 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=41.1
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 43 LVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
+...|..+|.+.++.|...|+..+=..+........-.+.+|+-+|.|++..||+.|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4455666777777777666665555444443444455566777777777777777777776643
No 119
>PLN02952 phosphoinositide phospholipase C
Probab=95.30 E-value=0.41 Score=36.59 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC-ChHHHHHHHHHhh-------
Q 037200 18 GDGKITRKELSDSLKNLGI--YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER-DEEEDMKEAFNVF------- 87 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~------- 87 (151)
+.|.+++++|..+.+.+-. ..+..++..+|..+..+ .+.|+.++|..++....... .....+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999887776632 23788999999999654 46899999999998865432 2334444454432
Q ss_pred cCCCCCcccHHHHHHHHHH
Q 037200 88 DQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 88 D~~~~g~is~~e~~~~l~~ 106 (151)
...+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 1123346899999999863
No 120
>PLN02228 Phosphoinositide phospholipase C
Probab=95.15 E-value=0.27 Score=37.28 Aligned_cols=65 Identities=15% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCC----CCCceeHHHHHHHHhc
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVD----GDGMVNYNEFKQMMKG 144 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~ 144 (151)
..+..+|..+.. ++.++.++|..+|.........+.+.+..++..+... ..|.++.++|..+|.+
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 444555555432 2345555555555544322112344445555544322 1234555555555544
No 121
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.04 E-value=0.22 Score=37.79 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcC-CCCCceeHHHHHHHHhcC
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDV-DGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~-~~~g~is~~ef~~~l~~~ 145 (151)
..+..+|..+.. ++.++.++|..+|.........+.+.+..++..+.. ...+.++++.|..+|.+.
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 466777777642 357777777777776644322356666667766532 234557777777777654
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.97 E-value=0.08 Score=39.64 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=56.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 78 EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 78 ~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
...+..|..+|.++.|+++.++..++|+..+... +.+.+..+....+.+.+|.+...||..++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~--d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW--DEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 3456779999999999999999999999998554 888999999999999999999999888765
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.80 E-value=0.064 Score=40.57 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHH
Q 037200 43 LVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEEL 100 (151)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~ 100 (151)
+.++|+..|.+.+|.++|.+++.-+..+. .....+.+..+|+.+|.+.+ ....++.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34455555555555555555555444422 22333444555555555555 4444444
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.77 E-value=0.086 Score=39.91 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=54.5
Q ss_pred eeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHH
Q 037200 58 VDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNE 137 (151)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~e 137 (151)
+.|..|...+..+..-+.+...+..+|+.+|.+.+|.|+..++..-+..+-... ..+.+.-+++.+++..+ ....++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~--~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD--ALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh--HHHHHHHHHhhccCCcc-cccccc
Confidence 666777777766554444556677888888888888888888888887765444 55667778888877766 554443
No 125
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.73 E-value=0.36 Score=38.04 Aligned_cols=142 Identities=11% Similarity=0.193 Sum_probs=85.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHH-HHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHH--
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNEL-VQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMK-- 81 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~-~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~-- 81 (151)
.++.+.+-..|.+....++..+++.+|...+...+.... .+-|-.... ..+.++|.+|..+...++-.......+.
T Consensus 144 ~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~ 222 (1267)
T KOG1264|consen 144 RWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQKAILLEFK 222 (1267)
T ss_pred HHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccchhhhhccc
Confidence 455666666776677779999999999887776654433 244433333 4578999999998887765432221111
Q ss_pred HH--HHhhcCCCCCcccHHHHHHHHHHcCCCC-CCCHHHHHHHHHHhcC-----CCCCceeHHHHHHHHhcCCC
Q 037200 82 EA--FNVFDQNGDGYITVEELRSVLASLGLKQ-GRTVEDCKLMIKKVDV-----DGDGMVNYNEFKQMMKGGGF 147 (151)
Q Consensus 82 ~~--f~~~D~~~~g~is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~d~-----~~~g~is~~ef~~~l~~~~~ 147 (151)
.. ...-+...-..++..+|.++|....... ......++.+...+-. ....+++..||+.+|-+...
T Consensus 223 ~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSreN 296 (1267)
T KOG1264|consen 223 KDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSREN 296 (1267)
T ss_pred chhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhccc
Confidence 11 1111223346899999999997543322 1112233344443322 24578999999999876543
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.59 E-value=0.026 Score=30.15 Aligned_cols=56 Identities=29% Similarity=0.525 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCC-------CCceeHHHHHHH
Q 037200 76 EEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDG-------DGMVNYNEFKQM 141 (151)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~-------~g~is~~ef~~~ 141 (151)
+.+.+..+|+.+ .+++++||.++|.+.|.. ++++.+.+.+.... .|.++|..|.+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p---------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP---------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C---------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc---------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 346788999999 678899999999998632 22344444443222 366888888754
No 127
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.50 E-value=0.034 Score=38.64 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=46.7
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 10 VFQMFDRNGDGKITRKELSDSLKNLGI-YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
-|..+|.|+++.|...|++.+-+-+.. .....=.+.++..+|.++|..|+++|+..-+...
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 378899999999999998875543322 2234445678899999999999999998777554
No 128
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.18 E-value=0.26 Score=37.08 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=56.1
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCC
Q 037200 8 RRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERD 75 (151)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 75 (151)
+..|..+|.++.|+++..++..++...+..++...+.++.+..+..-+|.+...+|.+++........
T Consensus 596 ~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~ 663 (680)
T KOG0042|consen 596 KTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCT 663 (680)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCCh
Confidence 45688888888899999999999988888888888888888888877888888888888877655443
No 129
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.96 E-value=0.61 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=22.1
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKN 33 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 33 (151)
.+.++.++|.++++.+.+.++..|+..+++.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 3567777777777766777777777776663
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=93.90 E-value=0.54 Score=35.94 Aligned_cols=69 Identities=13% Similarity=0.284 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCCCCCHHHHHHHHHHhcCC-------CCCceeHHHHHHHHhcC
Q 037200 76 EEEDMKEAFNVFDQNGDGYITVEELRSVLASLG-LKQGRTVEDCKLMIKKVDVD-------GDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~d~~-------~~g~is~~ef~~~l~~~ 145 (151)
+...+..+|..+..++ +.+|.++|..+|.... .....+.+++..++..+-.. ..+.++.++|..+|.+.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4567888999985333 7999999999998875 33223667777777655221 23459999999998774
No 131
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.78 E-value=0.21 Score=34.68 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHc----CCCCCCCHHH-----------HHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASL----GLKQGRTVED-----------CKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~----~~~~~~~~~~-----------~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
+..|...|.|++|+++-.|+..++... -.+.. .++. -.++++.+|.|.|..||.++|+..-.+.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkN-eeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKN-EEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 456777899999999999998888652 11110 1111 2347888999999999999999876654
Q ss_pred CC
Q 037200 146 GF 147 (151)
Q Consensus 146 ~~ 147 (151)
.+
T Consensus 326 ef 327 (442)
T KOG3866|consen 326 EF 327 (442)
T ss_pred cc
Confidence 43
No 132
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=0.35 Score=35.80 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=50.9
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc
Q 037200 7 LRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE 73 (151)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 73 (151)
+..-|+-.-++.+|.|+=.--++++.+.. ++-.++..+|...|.+.||.++..||+..+......
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 34556666678889998888888887653 556788899999999999999999999988766543
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=93.19 E-value=0.91 Score=26.06 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=54.7
Q ss_pred CCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcc
Q 037200 18 GDGKITRKELSDSLKNLG--IYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYI 95 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 95 (151)
.||.++..|...+-..+. ..++..+...+...+........++.+|...+............+..+|+.. .-+|.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 378899998888665431 3466777777777776555566788888888766442222344556667765 466778
Q ss_pred cHHHHHH
Q 037200 96 TVEELRS 102 (151)
Q Consensus 96 s~~e~~~ 102 (151)
+..|-.-
T Consensus 90 ~~~E~~~ 96 (104)
T cd07313 90 DEYEEHL 96 (104)
T ss_pred CHHHHHH
Confidence 8887443
No 134
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.57 E-value=0.31 Score=40.81 Aligned_cols=58 Identities=16% Similarity=0.412 Sum_probs=49.1
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037200 10 VFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQ 68 (151)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (151)
-|+.+|+++.|.|+..+|..++... ...+..++..+++-...+.+...+|.+|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4788999999999999999988753 346778888898888889999999999987653
No 135
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.43 E-value=1.3 Score=31.03 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc----CChHH--------HH---HHHHHh
Q 037200 23 TRKELSDSLKNL-GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE----RDEEE--------DM---KEAFNV 86 (151)
Q Consensus 23 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~----~~~~~--------~~---~~~f~~ 86 (151)
|..+++.++..+ |.....-.-+..|...|.+++|.++-.+.-.++...+.. ....+ .+ .-+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 455555555443 344444444556666677778877777776666544321 11111 11 235677
Q ss_pred hcCCCCCcccHHHHHHHH
Q 037200 87 FDQNGDGYITVEELRSVL 104 (151)
Q Consensus 87 ~D~~~~g~is~~e~~~~l 104 (151)
.|.|.+..||.+||...-
T Consensus 305 vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cccchhhhhhHHHHHhhh
Confidence 788888888888886544
No 136
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=0.26 Score=39.31 Aligned_cols=132 Identities=23% Similarity=0.408 Sum_probs=101.6
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC----------
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER---------- 74 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~---------- 74 (151)
..+...|+.+|..++|.|+-.+-..++...+ +....+-.+|...|..+.|.++...|...++......
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 3567789999999999999999998888655 6677888899999988889999999887765433210
Q ss_pred -------------------------------------ChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHH
Q 037200 75 -------------------------------------DEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVED 117 (151)
Q Consensus 75 -------------------------------------~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~ 117 (151)
........+|+.... +.|.++....+.++..-+. ....
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~L----p~~~ 163 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSKL----PSDV 163 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCCC----Chhh
Confidence 012244556777753 4788998888888876655 4466
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 118 CKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 118 ~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
+..++...|.+.+|.++..+|.-.+.
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred hccccccccccccCCCChhhhhhhhh
Confidence 78899999999999999999987654
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=92.08 E-value=0.9 Score=27.88 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-------CCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCC
Q 037200 19 DGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVN-------GDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQN 90 (151)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 90 (151)
=+.|++.||.++=.=+. .+...++..+..+..+ ..+.|+|+.|..++...+...-+.+.+..+|..|-..
T Consensus 5 ~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 36788888888433222 2334555555555322 3468999999999998887767788889999988543
No 138
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.89 E-value=0.2 Score=29.46 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 113 RTVEDCKLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 113 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
+++++++.++..+-.|..|.|.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 389999999999999999999999999987744
No 139
>PLN02223 phosphoinositide phospholipase C
Probab=91.71 E-value=1.6 Score=32.93 Aligned_cols=70 Identities=7% Similarity=0.029 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhcCCC--------CCceeHHHHHHHHhc
Q 037200 76 EEEDMKEAFNVFDQNGDGYITVEELRSVL---ASLGLKQGRTVEDCKLMIKKVDVDG--------DGMVNYNEFKQMMKG 144 (151)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~is~~e~~~~l---~~~~~~~~~~~~~~~~~~~~~d~~~--------~g~is~~ef~~~l~~ 144 (151)
....++.+|..+. .+.|.++.+.+.+++ .........+.++++.++..+-... .+.++.++|..+|.+
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4467788888883 667888888888888 4443333346777787777653322 255999999999887
Q ss_pred CC
Q 037200 145 GG 146 (151)
Q Consensus 145 ~~ 146 (151)
..
T Consensus 93 ~~ 94 (537)
T PLN02223 93 TE 94 (537)
T ss_pred cc
Confidence 54
No 140
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=91.31 E-value=0.89 Score=26.04 Aligned_cols=58 Identities=14% Similarity=0.335 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCC---CCceeHHHHHHHHhc
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDG---DGMVNYNEFKQMMKG 144 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~---~g~is~~ef~~~l~~ 144 (151)
++.-|..+.. +|.|+..+|.+.+ |+.. +.+-+.++|..+.... ...||.+|+..+..+
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI---GM~d--SkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI---GMKD--SKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH---T--S---HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc---CCcc--cHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 4455666643 7888888888877 6655 6666777776653321 456888877776544
No 141
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.73 E-value=0.87 Score=35.36 Aligned_cols=80 Identities=21% Similarity=0.478 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc---CC---CCCCCHHHHHHHHHHhcCCCCC
Q 037200 58 VDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL---GL---KQGRTVEDCKLMIKKVDVDGDG 131 (151)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~---~~---~~~~~~~~~~~~~~~~d~~~~g 131 (151)
+++++|. ...++.+..++..|.++|. .+|.++.+++..++... +. ....+.+....++...+.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 6666665 3344555667777777765 67777777777666543 11 0112445555566777777777
Q ss_pred ceeHHHHHHHHhc
Q 037200 132 MVNYNEFKQMMKG 144 (151)
Q Consensus 132 ~is~~ef~~~l~~ 144 (151)
++.++++...+..
T Consensus 77 y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 77 YITNEDLEILLLQ 89 (646)
T ss_pred eeeecchhHHHHh
Confidence 7766666655543
No 142
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=3.1 Score=25.57 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=63.6
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 037200 10 VFQMFDRNGDGKITRKELSDSLKNL--GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVF 87 (151)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 87 (151)
+|+.+ +.+|.++..|......-+ .+..+..++..+......-+...+++-.|...+...+......+.+..+|+..
T Consensus 35 lf~Vm--~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweIa 112 (148)
T COG4103 35 LFHVM--EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEIA 112 (148)
T ss_pred HHHHH--hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45555 347778888776644322 45567777887777766556677888888888876665544455667777776
Q ss_pred cCCCCCcccHHHHHHHHHHc
Q 037200 88 DQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 88 D~~~~g~is~~e~~~~l~~~ 107 (151)
..+|.++..|-.-+++..
T Consensus 113 --~ADg~l~e~Ed~vi~RvA 130 (148)
T COG4103 113 --YADGELDESEDHVIWRVA 130 (148)
T ss_pred --HccccccHHHHHHHHHHH
Confidence 567888888877666653
No 143
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.04 E-value=0.7 Score=24.70 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.6
Q ss_pred chhHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 037200 2 IMDTELRRVFQMFDRNGDGKITRKELSDSLK 32 (151)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 32 (151)
-|..++.+.|+.+ .++.++|+..+++..|.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 4778999999999 67889999999999765
No 144
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=88.95 E-value=4.7 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCCh-HHHHHHHHHhh---cCCCCCcccHHHHHHHHHHcCCCCCCCHHH
Q 037200 42 ELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDE-EEDMKEAFNVF---DQNGDGYITVEELRSVLASLGLKQGRTVED 117 (151)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~-~~~~~~~f~~~---D~~~~g~is~~e~~~~l~~~~~~~~~~~~~ 117 (151)
++..+++.++....+.+++++|...+...-..... ...+...|+.. |.+..|.+++.++...|..-..... +...
T Consensus 748 ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~-~~~r 826 (890)
T KOG0035|consen 748 ELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLD-TELR 826 (890)
T ss_pred HHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhc-HHHH
Confidence 34556666666666677777777777665433332 22233333333 4444577777777777765543331 2333
Q ss_pred HHHHHHHhcCCCCCceeHHHHHH
Q 037200 118 CKLMIKKVDVDGDGMVNYNEFKQ 140 (151)
Q Consensus 118 ~~~~~~~~d~~~~g~is~~ef~~ 140 (151)
+..-|+.+.+++. ++..+|+++
T Consensus 827 ~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 827 AILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHcchh-HHHHHHHHh
Confidence 3334444444433 466666555
No 145
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=88.64 E-value=0.082 Score=32.21 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcc
Q 037200 18 GDGKITRKELSDSLKNL--GIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYI 95 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 95 (151)
-||.++.+|...+..-+ ....+......+...++.-.....++.+++..+...........-+..++...-. ||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCC
Confidence 47888888888766654 3334555666666655543334566676665554422222223345556666543 4555
Q ss_pred cHHH
Q 037200 96 TVEE 99 (151)
Q Consensus 96 s~~e 99 (151)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 5555
No 146
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=88.33 E-value=2.5 Score=22.54 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 95 ITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 95 is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
++-+++..+++..|... +.+++..+++.-+..+--..+-+.+..+|.
T Consensus 14 l~d~~m~~if~l~~~~v--s~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEV--SKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCcc--CHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 34456777777777776 777777777775444333344445555554
No 147
>PLN02228 Phosphoinositide phospholipase C
Probab=88.20 E-value=4.1 Score=31.21 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=48.2
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNLGIY--IPDNELVQMIEKIDVN----GDGYVDINEFGSLYQT 69 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~ 69 (151)
++.++..+|..+.. ++.|+.++|..+|...... .+.+.+..++..+... ..+.++.+.|..++..
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 46789999988864 3579999999999876432 4566788888877543 2357899999888854
No 148
>PLN02222 phosphoinositide phospholipase C 2
Probab=87.88 E-value=3.7 Score=31.53 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=49.4
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNLGIY--IPDNELVQMIEKIDV-NGDGYVDINEFGSLYQT 69 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~~ 69 (151)
.+.++..+|..+.. ++.++.++|..+|...... .+.+.+..++..+.. ...+.++.+.|..++..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45789999999864 4799999999999876543 467778888877632 23567999999988865
No 149
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=87.04 E-value=1.6 Score=23.45 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=23.2
Q ss_pred eeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 58 VDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
++|......+...... .....+...|+.-+.+.|+.+||.+.++.+
T Consensus 9 ~~F~~L~~~l~~~l~~----~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 9 MPFPMLFSALSKHLPP----SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred ccHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4444444444443221 334444444444456667777776666654
No 150
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=0.78 Score=32.77 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCC-HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIP-DNELVQMIEKIDVNGDGYVDINEFGSLY 67 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (151)
.+++++.|+.+|+.++|+|+.+-+..++..++...+ ...+...-+.+|+..-|.|-..+|...+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 468899999999999999999999999998884444 4445555555666666666666655444
No 151
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.20 E-value=15 Score=29.21 Aligned_cols=137 Identities=12% Similarity=0.119 Sum_probs=86.9
Q ss_pred hhHHHHHHHHhhccC-CCCcccHHHHHHHHHH--------cCCCC--C---HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRN-GDGKITRKELSDSLKN--------LGIYI--P---DNELVQMIEKIDVNGDGYVDINEFGSLYQ 68 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~--------~~~~~--~---~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (151)
+-+-..++|...+-. +...+...+....|.. .|.-. + ..-++.+++.||+..+|.|..-+|...+.
T Consensus 418 ~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i 497 (966)
T KOG4286|consen 418 SLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII 497 (966)
T ss_pred cHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH
Confidence 334566778777754 3556666666665542 22211 1 22256789999999999999888887776
Q ss_pred HHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------cCCCCCCCHHHHHHHHHHhcCCCCCceeH
Q 037200 69 TIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLAS-------------LGLKQGRTVEDCKLMIKKVDVDGDGMVNY 135 (151)
Q Consensus 69 ~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~-------------~~~~~~~~~~~~~~~~~~~d~~~~g~is~ 135 (151)
.+ +.....+.++++|.....++.-.+ ...|...|.. +|... -+.-++.-|. ..++...|+.
T Consensus 498 ~l-ck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN--vepsvrsCF~--~v~~~pei~~ 571 (966)
T KOG4286|consen 498 SL-CKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN--IEPSVRSCFQ--FVNNKPEIEA 571 (966)
T ss_pred HH-hcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC--CChHHHHHHH--hcCCCCcchH
Confidence 64 445566778899999965554443 4445444432 23333 3344566666 3466677999
Q ss_pred HHHHHHHhcC
Q 037200 136 NEFKQMMKGG 145 (151)
Q Consensus 136 ~ef~~~l~~~ 145 (151)
..|+.++...
T Consensus 572 ~~f~dw~~~e 581 (966)
T KOG4286|consen 572 ALFLDWMRLE 581 (966)
T ss_pred HHHHHHhccC
Confidence 9999987654
No 152
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.72 E-value=6.9 Score=30.26 Aligned_cols=66 Identities=9% Similarity=0.205 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNLGI---YIPDNELVQMIEKIDV-------NGDGYVDINEFGSLYQT 69 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~~~~~ 69 (151)
++.++..+|..+..++ +.|+.++|..+|..-.. ..+...+..++..+-. -..+.++.+.|..++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4578999999996444 89999999999988653 2356666666654321 12346999999887754
No 153
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.19 E-value=6.3 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~ 106 (151)
+..++..||..++|.|+.-.++..+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 456788999999999999888877643
No 154
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=84.97 E-value=10 Score=26.12 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHH---HHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChH--HHHHHHHHhhcC
Q 037200 17 NGDGKITRKELSDSLKNL--GIYIPDNE---LVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEE--EDMKEAFNVFDQ 89 (151)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~--~~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~--~~~~~~f~~~D~ 89 (151)
.-||.++..|.. +...+ ...++.++ +..+|..- .....++.+|+..+.......... ..+..+|...
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA-- 140 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA-- 140 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--
Confidence 358999999988 33432 12344555 45555543 334578899988887655322211 1124455654
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Q 037200 90 NGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKV 125 (151)
Q Consensus 90 ~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (151)
--||.++..| ..+++.....++++..+...+...+
T Consensus 141 ~ADG~l~~~E-~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 141 FADGSLHPNE-RQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred HhcCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3568888888 5555555444445777777766553
No 155
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=83.01 E-value=6.2 Score=22.03 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC
Q 037200 38 IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGL 109 (151)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~ 109 (151)
+++.+....++..=. ....|.+.+|...+........ ......+=..+|--.+++||.-||.-+.+-++.
T Consensus 4 ITK~eA~~FW~~~Fg-~r~IVPW~~F~~~L~~~h~~~~-~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFG-KRTIVPWSEFRQALQKVHPISS-GLEAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp -SSHHHHHHHHHHHT-T-SEEEHHHHHHHHHHHS--SS-HHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred eccHHHHHHHHHHCC-CCeEeeHHHHHHHHHHhcCCCc-hHHHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 445556665554321 2345777777777766543322 233344455667777777777777776665543
No 156
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=82.46 E-value=5.5 Score=30.57 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=42.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC-C---HHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYI-P---DNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~---~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
.-+..+|..+|.+++|.++..|+..++......+ . ..+... .+..|.+++.-|+..+...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV------KNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce------ecccceeehhhHHHHHHHH
Confidence 3467889999999999999999999988764332 1 111111 2256889999998887553
No 157
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.06 E-value=5.1 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=7.2
Q ss_pred CCcccHHHHHHHHH
Q 037200 19 DGKITRKELSDSLK 32 (151)
Q Consensus 19 ~g~i~~~e~~~~l~ 32 (151)
+|.|+.+.|-+++.
T Consensus 42 dG~L~rs~Fg~CIG 55 (100)
T PF08414_consen 42 DGLLPRSDFGECIG 55 (100)
T ss_dssp TTBEEGGGHHHHHT
T ss_pred CCcccHHHHHHhcC
Confidence 55555555555443
No 158
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=81.72 E-value=7.1 Score=21.81 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 79 DMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 79 ~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
.....|+..= .+...|...+|.+.|....... +..+..++=..+|-.++++||.-||--+.+
T Consensus 8 eA~~FW~~~F-g~r~IVPW~~F~~~L~~~h~~~--~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 8 EAAEFWKTSF-GKRTIVPWSEFRQALQKVHPIS--SGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp HHHHHHHHHH-TT-SEEEHHHHHHHHHHHS--S--SHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCeEeeHHHHHHHHHHhcCCC--chHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 4555666542 3446799999999999986655 667778888899999999999888765543
No 159
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=81.46 E-value=4.3 Score=19.49 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=20.6
Q ss_pred HHHHHHHhhcc--CCCCcccHHHHHHHHHH
Q 037200 6 ELRRVFQMFDR--NGDGKITRKELSDSLKN 33 (151)
Q Consensus 6 ~~~~~f~~~d~--~~~g~i~~~e~~~~l~~ 33 (151)
.+-.+|+.+.. .....++..||+.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45677888763 34688999999988864
No 160
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=81.00 E-value=7.6 Score=21.69 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=49.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhc--cCChHHHHHHHHHhh
Q 037200 19 DGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMD--ERDEEEDMKEAFNVF 87 (151)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~ 87 (151)
=..||..|+..+....+...+..++..+....-.++-...+-++-..++..+.. .+.....+..+|..|
T Consensus 12 ln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred HhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999998886666566666666666655432 233344555666554
No 161
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.15 E-value=1.8 Score=31.08 Aligned_cols=63 Identities=19% Similarity=0.396 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHH-HHHHHHHhcCCCCCceeHHHHHHH
Q 037200 77 EEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVED-CKLMIKKVDVDGDGMVNYNEFKQM 141 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~d~~~~g~is~~ef~~~ 141 (151)
.+.+++.|+.+|..+.|+|+-+-+..++...+... ++.+ +..+=..+++..-|.|-.++|..-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v--se~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV--SEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc--cCHHHHHHhcCccChhhcceEEecccccc
Confidence 56789999999999999999999999999988443 4333 333444567777777666665443
No 162
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=79.60 E-value=3.1 Score=23.79 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=33.3
Q ss_pred CCCceeHHHHHHHHHHHhcc-CChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 54 GDGYVDINEFGSLYQTIMDE-RDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 54 ~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
.||.++-.|-..+-...... ..+......+...+........+..++.+.+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 36778877765544433221 3345556777777766666677777777776543
No 163
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.47 E-value=6.5 Score=21.07 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc
Q 037200 19 DGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE 73 (151)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 73 (151)
+-.++...+..++... ++......+...|+.=..+.|+.++|+..+....++
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4556666666666544 566666666666655567899999999999887664
No 164
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.19 E-value=34 Score=28.10 Aligned_cols=80 Identities=13% Similarity=0.277 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC---------ChHHHHHHHHHhhcCCC---
Q 037200 24 RKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER---------DEEEDMKEAFNVFDQNG--- 91 (151)
Q Consensus 24 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~---------~~~~~~~~~f~~~D~~~--- 91 (151)
.+.|..++..+. ...++..+|..+..+..-.++.+++..++.....++ .....+..+.+.|..++
T Consensus 207 ~e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 207 LEKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred HHHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 334444555443 457899999999888778899999999997654433 23556778888886654
Q ss_pred -CCcccHHHHHHHHHH
Q 037200 92 -DGYITVEELRSVLAS 106 (151)
Q Consensus 92 -~g~is~~e~~~~l~~ 106 (151)
+|-++.+-|..++..
T Consensus 284 ~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 284 EKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccccchhhhHHHhhC
Confidence 789999999888864
No 165
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.72 E-value=15 Score=22.65 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=39.8
Q ss_pred CceeHHHHHHHHHHHhccCChHHHHHHHHHhhc-------CCCCCcccHHHHHHHHHHc-CCCCCCCHHHHHHHHHHhcC
Q 037200 56 GYVDINEFGSLYQTIMDERDEEEDMKEAFNVFD-------QNGDGYITVEELRSVLASL-GLKQGRTVEDCKLMIKKVDV 127 (151)
Q Consensus 56 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D-------~~~~g~is~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~d~ 127 (151)
+.++-.||.++-...... ...++.+++.|. .+..+.|+.+-|+.+|+.+ ... ++++-+.++|..+..
T Consensus 6 ~~lsp~eF~qLq~y~eys---~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d--~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYS---TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD--LPEDLCQHLFLSFQK 80 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S----HHHHHHHHHHS--
T ss_pred eccCHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHhC
Confidence 567788887766544221 234566666552 2346699999999999986 444 489999999988854
Q ss_pred CC
Q 037200 128 DG 129 (151)
Q Consensus 128 ~~ 129 (151)
..
T Consensus 81 ~~ 82 (138)
T PF14513_consen 81 KP 82 (138)
T ss_dssp --
T ss_pred cc
Confidence 43
No 166
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.07 E-value=6.7 Score=24.20 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
.+|+.+. -+|.++..|...+..-+....+++.+++..++.....-+...+++..|...++
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445442 34445555544444443333333555555555554444444455555555444
No 167
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=75.69 E-value=12 Score=21.15 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhccCCCCcccHHHHHHHHHHc-------C----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 4 DTELRRVFQMFDRNGDGKITRKELSDSLKNL-------G----IYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
..+++-+|+.. .+++|.++...|..+|..+ | ....+..++.-|... .....|+.++|+..+...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 35778889888 5789999999999988752 1 112455555666554 234567777777777553
No 168
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=75.43 E-value=8.5 Score=22.08 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHHcCC-----CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCC
Q 037200 18 GDGKITRKELSDSLKNLGI-----YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGD 92 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 92 (151)
.||.++..|...+...+.. ......+..++...-..- ...+..++...+...........-+..++... .-+
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AAD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hcc
Confidence 4788899988887776532 233445555554442210 02344556555555433222223344555555 355
Q ss_pred CcccHHH
Q 037200 93 GYITVEE 99 (151)
Q Consensus 93 g~is~~e 99 (151)
|.++..|
T Consensus 92 G~~~~~E 98 (111)
T cd07176 92 GEVDPEE 98 (111)
T ss_pred CCCCHHH
Confidence 6777766
No 169
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=75.19 E-value=3.9 Score=24.25 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=12.7
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037200 39 PDNELVQMIEKIDVNGDGYVDINEFGSLY 67 (151)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (151)
+.+++..+|..+-.+..|++.|.+|+.-+
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 34445555555555555555555554443
No 170
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=74.94 E-value=14 Score=21.56 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=46.0
Q ss_pred hhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc--CCCCCCCHHHHHHHHHHhc
Q 037200 49 KIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL--GLKQGRTVEDCKLMIKKVD 126 (151)
Q Consensus 49 ~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~d 126 (151)
.+|+..+..|+.++...++..- .-|+..|.....-||..-+.+++.+. +....++.+-+..++..++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g-----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREG-----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCC-----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 3566777778888876666442 23556665555567777777777543 2222347777788887776
Q ss_pred CCCCCce
Q 037200 127 VDGDGMV 133 (151)
Q Consensus 127 ~~~~g~i 133 (151)
..-.|.+
T Consensus 80 ~~~q~~~ 86 (107)
T TIGR01848 80 GSMQSFV 86 (107)
T ss_pred hhHHHHH
Confidence 5554444
No 171
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=74.78 E-value=1.1 Score=29.17 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHH
Q 037200 92 DGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQM 141 (151)
Q Consensus 92 ~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 141 (151)
+|++|-.|+.-+-..+- . .+.-+..+|...|.++||+|+++||...
T Consensus 202 d~~~sh~el~pl~ap~i--p--me~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLI--P--MEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred cccccccccccccCCcc--c--HHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 55555555544332221 1 2233444555555555555555555443
No 172
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=72.64 E-value=10 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=15.8
Q ss_pred hhcCCCCCcccHHHHHHHHHH
Q 037200 86 VFDQNGDGYITVEELRSVLAS 106 (151)
Q Consensus 86 ~~D~~~~g~is~~e~~~~l~~ 106 (151)
.+|...+.+||++++.++.+.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 467777788888888887765
No 173
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.17 E-value=29 Score=23.89 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhh-ccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 3 MDTELRRVFQMF-DRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 3 ~~~~~~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
+...+.+.|..+ |+..+..|-...+..+...+|..+..-.+--+-..+++..-+..+.++|+.-+..+
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 445667777664 44455689999999999999988766555555555566666788888888766554
No 174
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.19 E-value=6.2 Score=15.70 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=6.3
Q ss_pred CCCCCcccHHHHH
Q 037200 89 QNGDGYITVEELR 101 (151)
Q Consensus 89 ~~~~g~is~~e~~ 101 (151)
.|++|.|+.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3455555554443
No 175
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=71.14 E-value=14 Score=19.70 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 037200 22 ITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQT 69 (151)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (151)
++.+++..++...+..++..++..+++.-+..+....+-..+..++.-
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 445677788888888888888888887765555455555555444433
No 176
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=70.95 E-value=19 Score=21.17 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=43.2
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 037200 8 RRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLY 67 (151)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (151)
.-.|.+++..++...+..+++.+|...|.....+.+..+++.+ +|. +.++.+..=
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~G 58 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAAG 58 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHHh
Confidence 4456777777888889999999999999999999999999887 243 566665443
No 177
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=69.18 E-value=1.8 Score=28.27 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=31.9
Q ss_pred CCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 037200 55 DGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVL 104 (151)
Q Consensus 55 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l 104 (151)
+|.+|-.+.+.+-..+ -+...-....|..+|.|++|+|++.|+...+
T Consensus 202 d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 5556655543322221 1334456788999999999999999998766
No 178
>PLN02223 phosphoinositide phospholipase C
Probab=67.82 E-value=40 Score=25.97 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhhccCCCCcccHHHHHHHHHHc---C--CCCCHHHHHHHHHhhCCC--------CCCceeHHHHHHHHHH
Q 037200 3 MDTELRRVFQMFDRNGDGKITRKELSDSLKNL---G--IYIPDNELVQMIEKIDVN--------GDGYVDINEFGSLYQT 69 (151)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~--~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~~~~ 69 (151)
.+..++.+|..+. .+.|.++...+..++.-+ . ...+.++++.++..+-.. ..+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4678999999994 668899999999988332 2 234556666665544221 2256999999888855
No 179
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.72 E-value=37 Score=23.38 Aligned_cols=83 Identities=11% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHhh-CCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCH
Q 037200 37 YIPDNELVQMIEKI-DVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTV 115 (151)
Q Consensus 37 ~~~~~~~~~~~~~~-d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~ 115 (151)
..+...+..+|..+ |...+..|..+-...+|..+--.+.....+..+|+.- ...-|..++++|..-+..++.. +.
T Consensus 60 ~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~~d---S~ 135 (260)
T KOG3077|consen 60 RVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALGCD---SI 135 (260)
T ss_pred cccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcCCC---cH
Confidence 34556666666665 5555567888888888877766666666677777765 6788999999999999998876 55
Q ss_pred HHHHHHHH
Q 037200 116 EDCKLMIK 123 (151)
Q Consensus 116 ~~~~~~~~ 123 (151)
+.++..+.
T Consensus 136 d~lq~~l~ 143 (260)
T KOG3077|consen 136 DKLQQRLD 143 (260)
T ss_pred HHHHHHHH
Confidence 55555443
No 180
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=65.66 E-value=22 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc
Q 037200 93 GYITVEELRSVLASLGLKQGRTVEDCKLMIKKVD 126 (151)
Q Consensus 93 g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 126 (151)
..||..||.++-+..|.+. +..++..+...+-
T Consensus 13 n~iT~~eLlkyskqy~i~i--t~~QA~~I~~~lr 44 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI--TKKQAEQIANILR 44 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC--CHHHHHHHHHHHh
Confidence 3456666666666666655 6666666555553
No 181
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=65.37 E-value=18 Score=18.75 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 19 DGKITRKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
+-.+|.+|+...+..++-.++..++..+|..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 45678889999999888888888888888765
No 182
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=61.50 E-value=13 Score=20.39 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCC
Q 037200 91 GDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVD 128 (151)
Q Consensus 91 ~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~ 128 (151)
+.|+||++++...|.... . +.+.+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~--~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--L--DPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCccC--C--CHHHHHHHHHHHHHC
Confidence 568888888888886443 2 667778877776443
No 183
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=60.66 E-value=24 Score=22.96 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=23.3
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcC
Q 037200 88 DQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDV 127 (151)
Q Consensus 88 D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~ 127 (151)
..+.+|+++.+++.+.+..-+... +.+++..+...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~--t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWV--TEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCC--CHHHHHHHHhhCCC
Confidence 357889999999988888876665 78888888776543
No 184
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=60.04 E-value=35 Score=20.39 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=38.9
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 89 QNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 89 ~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
.|++.+...--...+|..-|.....+.+++..+...+..... ++.+++..+++
T Consensus 68 ~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~~~~--~~~e~i~~wl~ 120 (121)
T TIGR01550 68 NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVATGET--ISVESLADWLR 120 (121)
T ss_pred ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHh
Confidence 456667777777788888888776677778888777744332 89999888875
No 185
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.13 E-value=28 Score=18.66 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 18 GDGKITRKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
.+-.|+.+-++..+.+.|..+++..+++.++..
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 356788999999999999999999999888765
No 186
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.10 E-value=27 Score=18.42 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 18 GDGKITRKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
.+-.|+.+-++..+.++|..+++..++.+.+..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356789999999999999999999999887764
No 187
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=57.88 E-value=26 Score=21.57 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCCcccHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHhcCCCCCc-eeHHHHHHH
Q 037200 91 GDGYITVEELRSVLASL-------GLKQGRTVEDCKLMIKKVDVDGDGM-VNYNEFKQM 141 (151)
Q Consensus 91 ~~g~is~~e~~~~l~~~-------~~~~~~~~~~~~~~~~~~d~~~~g~-is~~ef~~~ 141 (151)
++..||.+||.++...- |.-..++.++++.+...+...+.+. +|..|.++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 67789999999998764 2223347788888888887766554 898887664
No 188
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=56.96 E-value=39 Score=20.03 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHH
Q 037200 82 EAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQ 140 (151)
Q Consensus 82 ~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 140 (151)
.+|..+-.-++..+|.+++..++...|... ....+..+++.+.. .+.++++.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveV--d~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADV--EDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHHHHcC-----CCHHHHHH
Confidence 345555456777799999999999999987 77778888887732 44555554
No 189
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=55.20 E-value=20 Score=18.62 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=19.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 037200 21 KITRKELSDSLKNLGIYIPDNELVQM 46 (151)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 46 (151)
.|+.++|..+|......++..++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 57889999999988777887777653
No 190
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.74 E-value=46 Score=24.83 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=37.1
Q ss_pred CCCCceeHHHHHHHHHHHhc---cCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 53 NGDGYVDINEFGSLYQTIMD---ERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 53 ~~~~~i~~~ef~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
.++...+..+|+..-..... .+-..+.++.+-+.+|.|.+|.|+.+|-..++++-
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 34556666777554432211 22234567888899999999999999988888763
No 191
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=54.12 E-value=29 Score=24.98 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
..+...+|..+.|.++.....-.+..+-... -.+.++.+|+.. .+..|.+.+-.|..+++
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk--~~dklryIfs~i-sds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGK--IKDKLRYIFSLI-SDSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccch--HHHHHHHHHHHH-ccchHHHHHHHHHHHHH
Confidence 3445677888999999988888887664433 567788888888 46677777777666665
No 192
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=53.95 E-value=44 Score=19.69 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVD 126 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 126 (151)
..+|-.+..-++-..+..++..+|...|... ..+-++.+++.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~--d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEI--DDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCccc--CHHHHHHHHHHhc
Confidence 3456666667777899999999999999988 8888999998883
No 193
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.34 E-value=70 Score=25.37 Aligned_cols=80 Identities=26% Similarity=0.372 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC-------ChHHHHHHHHHhhcCCCCCc
Q 037200 22 ITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER-------DEEEDMKEAFNVFDQNGDGY 94 (151)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-------~~~~~~~~~f~~~D~~~~g~ 94 (151)
++.+++. ......++.++.++..+|. .+|.++-+++..++.....-. ...+....++...|.+..|+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 6666666 3333446667777777776 667777777766665443211 12234456677778888888
Q ss_pred ccHHHHHHHHHHc
Q 037200 95 ITVEELRSVLASL 107 (151)
Q Consensus 95 is~~e~~~~l~~~ 107 (151)
+..+++...+...
T Consensus 78 ~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 78 ITNEDLEILLLQI 90 (646)
T ss_pred eeecchhHHHHhc
Confidence 8888888777644
No 194
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=52.90 E-value=43 Score=19.26 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHH
Q 037200 22 ITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEA 83 (151)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 83 (151)
+...++.-++.-+...++.+++.++...+-..+....+-.+.-..+.......+..+.+..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV 81 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERV 81 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 56666666666666667777776666665444433344445545554544444444444443
No 195
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.38 E-value=29 Score=25.58 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHH
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQM 141 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 141 (151)
...+|-.+. .-+|+||-..-..-|-.... +...+-.+|+..|.++||.++-+||.-.
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~skl----pnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVKSKL----PNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHhccC----chhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 456666663 45688887776666654333 5578999999999999999999998654
No 196
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=51.89 E-value=47 Score=26.61 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 79 DMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 79 ~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
....+|+...+.+.-.+..+++..++ .+++++..++.++...++.||++.|.+...
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~---------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv 460 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFM---------GDEEAERAFSLFEGASDENITRSSFKEWIV 460 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcC---------CHHHHHHHHHhhhhhcccCccHHHHHHHHH
Confidence 45678888887787788888777766 667788888888776666699999887754
No 197
>PRK00523 hypothetical protein; Provisional
Probab=51.18 E-value=39 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 18 GDGKITRKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
.+-.|+.+-++..+.++|..+++..+++..+..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356688888999899999999999988887765
No 198
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=50.41 E-value=1e+02 Score=22.89 Aligned_cols=86 Identities=13% Similarity=0.251 Sum_probs=43.5
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCC---
Q 037200 17 NGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDG--- 93 (151)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g--- 93 (151)
.....+..+.|.++|.......+--+...+=..+|...++.|+--||-.+-... . +-..+-.-|+.+..-+-|
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF-q---Pw~tllkNWq~LavtHPGYmA 261 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF-Q---PWKTLLKNWQTLAVTHPGYMA 261 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh-c---cHHHHHHhhhhhhccCCceeE
Confidence 345566667777777665544444455555555666666666644443222211 1 112223334444444444
Q ss_pred cccHHHHHHHHHH
Q 037200 94 YITVEELRSVLAS 106 (151)
Q Consensus 94 ~is~~e~~~~l~~ 106 (151)
++|++|++.-|.+
T Consensus 262 FLTYDEVk~RLqk 274 (563)
T KOG1785|consen 262 FLTYDEVKARLQK 274 (563)
T ss_pred EeeHHHHHHHHHH
Confidence 4566666665554
No 199
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=50.12 E-value=53 Score=21.28 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=7.7
Q ss_pred CCCCcccHHHHHHHHH
Q 037200 90 NGDGYITVEELRSVLA 105 (151)
Q Consensus 90 ~~~g~is~~e~~~~l~ 105 (151)
+.+|++..+++.+.++
T Consensus 29 d~~G~v~v~~Ll~~~~ 44 (179)
T PRK00819 29 DEEGWVDIDALIEALA 44 (179)
T ss_pred CCCCCEEHHHHHHHHH
Confidence 3445555555444443
No 200
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=49.52 E-value=62 Score=20.11 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=44.0
Q ss_pred CceeHHHHHHHHHHHh-------ccCC-hH---HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHH-
Q 037200 56 GYVDINEFGSLYQTIM-------DERD-EE---EDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIK- 123 (151)
Q Consensus 56 ~~i~~~ef~~~~~~~~-------~~~~-~~---~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~- 123 (151)
..|++++|...+.... .... +. .....+|..+ |...=+.+-+.++|+.. +++|+..++.
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~V--s~~El~d~l~~ 117 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITV--SDDELQDMLNQ 117 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCcc--CHHHHHHHHhc
Confidence 4589999988776543 1111 11 2234455544 33334555566677776 7777777661
Q ss_pred ---------HhcCCCCCceeHHHHHHH
Q 037200 124 ---------KVDVDGDGMVNYNEFKQM 141 (151)
Q Consensus 124 ---------~~d~~~~g~is~~ef~~~ 141 (151)
.+-.+..|..+...+..+
T Consensus 118 g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 118 GTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred CCCchhhhccccCcccCCcCHHHHHhh
Confidence 122345777777776655
No 201
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=49.47 E-value=55 Score=19.47 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHcCC---CCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 100 LRSVLASLGL---KQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 100 ~~~~l~~~~~---~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
+.+++..+|. ...........+++.+ .+|.||.++-.+.|+
T Consensus 70 Ld~ii~~lg~~~~~~~~~~~~~~~IL~~L---~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 70 LDKIIEKLGYEEDEEEEEEDERKEILDKL---EKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHHhCCCCCcccccchhHHHHHHHH---HcCCCCHHHHHHHhC
Confidence 4445555555 2222445566677776 367788888776653
No 202
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=48.23 E-value=41 Score=17.65 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCC
Q 037200 91 GDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDG 129 (151)
Q Consensus 91 ~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (151)
.++.++..++.+.+...|... +++.+....+.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~--se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEEL--SEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhh--hHHHHHHHHHHHHHCC
Confidence 456788888888888887777 8888888888886554
No 203
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=47.60 E-value=1.2e+02 Score=22.65 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHH
Q 037200 37 YIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVE 116 (151)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~ 116 (151)
..++.+....|+..= .....+.|..|.+.+..... -.+.-....+=..+|...+++||.-||.-+-+.+..-.
T Consensus 171 riTKadA~~FWr~~f-g~k~ivPW~~F~q~L~~~Hp-i~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~----- 243 (563)
T KOG1785|consen 171 RITKADAAEFWRKHF-GKKTIVPWKTFRQALHKVHP-ISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWK----- 243 (563)
T ss_pred eeccccHHHHHHHhc-CCcccccHHHHHHHHHhcCC-CcchhHHHHhhceeccccccceeeehhhhHHHhhccHH-----
Confidence 356666777776652 23457899999988877532 22223344455678999999999999877665553221
Q ss_pred HHHHHHHHhcCCCCCc---eeHHHHHHHHhc
Q 037200 117 DCKLMIKKVDVDGDGM---VNYNEFKQMMKG 144 (151)
Q Consensus 117 ~~~~~~~~~d~~~~g~---is~~ef~~~l~~ 144 (151)
-+-.-|+.+...+-|+ +||+|-.+-|++
T Consensus 244 tllkNWq~LavtHPGYmAFLTYDEVk~RLqk 274 (563)
T KOG1785|consen 244 TLLKNWQTLAVTHPGYMAFLTYDEVKARLQK 274 (563)
T ss_pred HHHHhhhhhhccCCceeEEeeHHHHHHHHHH
Confidence 2233345566677776 488887766654
No 204
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=47.29 E-value=60 Score=19.28 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=37.7
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGS 65 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (151)
-.|......++..+|..++..+|...|.......+..+++.+. ..+.++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3455555566777899999999999999888888888887772 244555544
No 205
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=47.04 E-value=1.3e+02 Score=23.06 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=41.0
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh---hCC-----CCCCceeHHHHHHHH
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEK---IDV-----NGDGYVDINEFGSLY 67 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~d~-----~~~~~i~~~ef~~~~ 67 (151)
-+|..+...+++.++..-|..+|++.|..-+...+...+.. +++ .....++-+.|...+
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 35666666667999999999999999988776666655543 332 223557777776655
No 206
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.63 E-value=75 Score=20.63 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=61.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh----CCCCCCceeHHHHHHHHHHHhc--------
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKI----DVNGDGYVDINEFGSLYQTIMD-------- 72 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~~~~~~~~-------- 72 (151)
..++++|..||...=-.++.+++..++..-+.-.....|..+.... +... . +|.+|+..+.....
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~Pi~~~~~~~ 129 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQPQPRQRPTD 129 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCCCccCCcccc
Confidence 5678889999988888889999999888776666665555443321 1111 1 67777655421110
Q ss_pred --cCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC
Q 037200 73 --ERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLK 110 (151)
Q Consensus 73 --~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~ 110 (151)
-+........+.+.+-+.|-.++...-...+|.+.|+.
T Consensus 130 ~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~v 169 (179)
T TIGR00624 130 SEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGMV 169 (179)
T ss_pred ccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCCc
Confidence 01112234445555555566666666666666666654
No 207
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=46.11 E-value=66 Score=19.43 Aligned_cols=14 Identities=14% Similarity=0.346 Sum_probs=6.8
Q ss_pred ceeHHHHHHHHHHH
Q 037200 57 YVDINEFGSLYQTI 70 (151)
Q Consensus 57 ~i~~~ef~~~~~~~ 70 (151)
.+|..+|--++...
T Consensus 67 ~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 67 KLTRSQIDYLYNRV 80 (122)
T ss_pred hcCHHHHHHHHHHH
Confidence 45555554444444
No 208
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=45.99 E-value=75 Score=22.84 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=6.9
Q ss_pred CCcccHHHHHHHHHH
Q 037200 92 DGYITVEELRSVLAS 106 (151)
Q Consensus 92 ~g~is~~e~~~~l~~ 106 (151)
.|.||++|-...++.
T Consensus 300 ~G~itReeal~~v~~ 314 (343)
T TIGR03573 300 SGRITREEAIELVKE 314 (343)
T ss_pred cCCCCHHHHHHHHHH
Confidence 344444444444444
No 209
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=45.94 E-value=55 Score=18.51 Aligned_cols=82 Identities=12% Similarity=0.215 Sum_probs=43.0
Q ss_pred CCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccC--ChHHHHHHHHHhhcCCCCCc
Q 037200 18 GDGKITRKELSDSLKNLG-IYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDER--DEEEDMKEAFNVFDQNGDGY 94 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~ 94 (151)
-||.++..|...+-..+. ..........+...+........++.+|...+....... .....+..+|... -.||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA--~ADG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIA--YADGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHcCC
Confidence 478888888877554431 223233333333333222222366777777776643211 1233445556655 34677
Q ss_pred ccHHHHH
Q 037200 95 ITVEELR 101 (151)
Q Consensus 95 is~~e~~ 101 (151)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 8887743
No 210
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=45.68 E-value=63 Score=19.05 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 142 (151)
+|..+-..++..+|.+++..+++..|... ...-+..+++.+.. .+.++++.--
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveV--e~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEV--DDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 44555556777899999999999999886 77777777777732 4566666543
No 211
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=44.99 E-value=30 Score=15.14 Aligned_cols=11 Identities=9% Similarity=0.489 Sum_probs=5.1
Q ss_pred eeHHHHHHHHh
Q 037200 133 VNYNEFKQMMK 143 (151)
Q Consensus 133 is~~ef~~~l~ 143 (151)
||.++|..++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666655553
No 212
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.83 E-value=58 Score=21.18 Aligned_cols=36 Identities=19% Similarity=0.478 Sum_probs=23.1
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 037200 16 RNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKID 51 (151)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (151)
-+.+|+++.+++.+.+..-+..++.+++.++...-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 467899999999998887766678888888877644
No 213
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=44.60 E-value=55 Score=18.09 Aligned_cols=38 Identities=11% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCC
Q 037200 38 IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERD 75 (151)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 75 (151)
+++.+...+.-.++.-..|.|+.+.|+..+..+...+.
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~elLnt~~ 53 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFELLNTHE 53 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccHH
Confidence 45666666655555556788888888888877766543
No 214
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=40.46 E-value=62 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=9.1
Q ss_pred HHHhhcCCCCCcccHHHHHHHH
Q 037200 83 AFNVFDQNGDGYITVEELRSVL 104 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l 104 (151)
+...+...+....+..++..-+
T Consensus 97 a~~lf~~~k~~~~~l~~~~~~~ 118 (267)
T PRK09430 97 AQQAFREGKEPDFPLREKLRQF 118 (267)
T ss_pred HHHHHHHhcccCCCHHHHHHHH
Confidence 3444444333334444444433
No 215
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.22 E-value=28 Score=30.52 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC----CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIY----IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTI 70 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (151)
+.+.+++.++|++..|.|...++...++.+... ...+. +.+....-...++.|++.+-+.++...
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 566788899999999999999999999986432 22222 222222223367888888877766543
No 216
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=39.59 E-value=31 Score=19.95 Aligned_cols=15 Identities=7% Similarity=-0.029 Sum_probs=8.1
Q ss_pred ceeHHHHHHHHhcCC
Q 037200 132 MVNYNEFKQMMKGGG 146 (151)
Q Consensus 132 ~is~~ef~~~l~~~~ 146 (151)
.+|-+++++++..++
T Consensus 71 ~~s~~e~~~~l~~~p 85 (105)
T cd03035 71 ALDAAKAIALMLEHP 85 (105)
T ss_pred cCCHHHHHHHHHhCc
Confidence 355566666555443
No 217
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=39.47 E-value=87 Score=22.72 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=39.0
Q ss_pred HhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc
Q 037200 12 QMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE 73 (151)
Q Consensus 12 ~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 73 (151)
..+|..+.|.++..-.+-++.-+....-.+..+.+|.... +.+|.+.+-.|.+++......
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlsl 177 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSL 177 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcC
Confidence 3456667777777766666665555455666677776663 445777777777777665543
No 218
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=38.89 E-value=49 Score=15.90 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHH
Q 037200 97 VEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQM 141 (151)
Q Consensus 97 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 141 (151)
.+|....|..+|. +..++......... ...++.++.++.
T Consensus 3 ~~d~~~AL~~LGy----~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGY----SKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS-----HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 3567777877877 66888888888865 344677776654
No 219
>PRK01844 hypothetical protein; Provisional
Probab=38.63 E-value=67 Score=17.37 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 18 GDGKITRKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
.+-.|+.+-++..+.+.|..+++..++...+..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 355688899999999999999999999887765
No 220
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=38.60 E-value=67 Score=17.35 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHcCCCCCCCHHH
Q 037200 96 TVEELRSVLASLGLKQGRTVED 117 (151)
Q Consensus 96 s~~e~~~~l~~~~~~~~~~~~~ 117 (151)
|..+|...+...|.+...+.++
T Consensus 47 s~~eF~~~L~~~gI~~~~~~ee 68 (76)
T PF03683_consen 47 SRWEFLELLKERGIPINYDEEE 68 (76)
T ss_pred CHHHHHHHHHHCCCCCCCCHHH
Confidence 5555555555555554334433
No 221
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.50 E-value=54 Score=16.22 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 037200 19 DGKITRKELSDSLKNLGIYIPDNELVQMIEKIDV 52 (151)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 52 (151)
+|.++..+|+..+. .+...+-.++..+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 66777777777665 455555555555554
No 222
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=38.42 E-value=81 Score=21.91 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=7.5
Q ss_pred CcccHHHHHHHHHHc
Q 037200 93 GYITVEELRSVLASL 107 (151)
Q Consensus 93 g~is~~e~~~~l~~~ 107 (151)
-..+..+|++.|..+
T Consensus 117 ~~~~~~~Fk~~L~~i 131 (265)
T PF09412_consen 117 APSDEAEFKKQLKNI 131 (265)
T ss_dssp S-SSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 344555555555543
No 223
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=38.38 E-value=1e+02 Score=19.98 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHH
Q 037200 17 NGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDIN 61 (151)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ 61 (151)
+.+|.++.+++.+.++..+...+.+.+.++...- ..++..+.
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d---~K~Rf~l~ 70 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESD---DKGRFEIS 70 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC---CCcceEec
Confidence 6789999999998887655567888888776543 33454443
No 224
>CHL00091 apcE phycobillisome linker protein
Probab=37.75 E-value=2e+02 Score=23.86 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHhcCCC-----CCceeHHHHHHHHhcCCCCCC
Q 037200 114 TVEDCKLMIKKVDVDG-----DGMVNYNEFKQMMKGGGFAAL 150 (151)
Q Consensus 114 ~~~~~~~~~~~~d~~~-----~g~is~~ef~~~l~~~~~~~~ 150 (151)
+.+|+.+.+..+...+ |-.|+-+||.+.+-.....+.
T Consensus 351 ~~~E~~~~~~i~a~~G~~a~IDsliDS~EY~~~FGedtVPY~ 392 (877)
T CHL00091 351 SLEEFQKYFAILSSRGLDGLVDALLNSKEYADYFGEETVPYL 392 (877)
T ss_pred CHHHHHHHHHHHHccCcceeehhhcCcHHHHHhcCCCcCCcc
Confidence 5566666666665444 455667777777765554443
No 225
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=36.63 E-value=78 Score=17.53 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=37.4
Q ss_pred CCCcccHHHHHHHHHHcCCC-----CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCC
Q 037200 18 GDGKITRKELSDSLKNLGIY-----IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGD 92 (151)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~-----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 92 (151)
.||.++.+|...+...+... .....+...+...-.. ..+...+................+..++... ..+
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia--~aD 86 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVA--LAD 86 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hhc
Confidence 37888888888866654221 1223344444333211 2234445444444322111223344445554 456
Q ss_pred CcccHHHH
Q 037200 93 GYITVEEL 100 (151)
Q Consensus 93 g~is~~e~ 100 (151)
|.++..|.
T Consensus 87 G~~~~~E~ 94 (104)
T cd07177 87 GELDPEER 94 (104)
T ss_pred cCCCHHHH
Confidence 77776663
No 226
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.62 E-value=45 Score=14.73 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=7.6
Q ss_pred CCcccHHHHHHHHH
Q 037200 92 DGYITVEELRSVLA 105 (151)
Q Consensus 92 ~g~is~~e~~~~l~ 105 (151)
.|.|+.+++..+..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35556666555554
No 227
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=36.11 E-value=1.2e+02 Score=23.38 Aligned_cols=48 Identities=15% Similarity=0.412 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCC
Q 037200 80 MKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDG 129 (151)
Q Consensus 80 ~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (151)
...+-..++..+.|.++.+|..++|..+.... .+-+++.+++++..+.
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~--nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRD--NSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccc--cCCCHHHHHHHhhcch
Confidence 35566777888999999999999999998876 6666777887775543
No 228
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=35.52 E-value=1.3e+02 Score=19.85 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=28.8
Q ss_pred HHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC
Q 037200 65 SLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQ 111 (151)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~ 111 (151)
.++-+.++...+....-.+-..+. ++-.+++.+|+...|+.+|...
T Consensus 42 ELsFCILTANsSA~~~~~~q~~lG-~gfly~~~eEL~e~Lk~~g~Rf 87 (210)
T COG1059 42 ELSFCILTANSSATMGLRAQNELG-DGFLYLSEEELREKLKEVGYRF 87 (210)
T ss_pred HHHHHhccccchHHHHHHHHHHhc-cccccCCHHHHHHHHHHhcchh
Confidence 333344443333344444555553 6777889999999999987754
No 229
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=35.31 E-value=81 Score=17.33 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHH-HHHhcCC------CCCceeHHHHHHHHhcCC
Q 037200 98 EELRSVLASLGLKQGRTVEDCKLM-IKKVDVD------GDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 98 ~e~~~~l~~~~~~~~~~~~~~~~~-~~~~d~~------~~g~is~~ef~~~l~~~~ 146 (151)
-++..+|.+.|.+. +.+++... .+.|..+ .-..++.++++.+|.+.+
T Consensus 5 HeVL~mml~~~~~~--t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 5 HEVLNLMLASGEPY--TRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHHHHcCCCc--CHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 35666776667776 66666554 4555444 234488999999887654
No 230
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=35.22 E-value=1e+02 Score=18.37 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=35.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHH
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQ 140 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 140 (151)
+|..+-..++..+|.+++..++...|... ...-+..+++.+.. .+..+++.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvev--d~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADA--DDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34444345667799999999999999876 67777777777732 45666664
No 231
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=35.13 E-value=1.1e+02 Score=23.50 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=44.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHH---hcC-----CCCCceeHHHHHHHHhc
Q 037200 81 KEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDCKLMIKK---VDV-----DGDGMVNYNEFKQMMKG 144 (151)
Q Consensus 81 ~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~---~d~-----~~~g~is~~ef~~~l~~ 144 (151)
..+|..+-...++.++.-.|..+|++.|+.. ++.-+..+++. ++. ..-+.++.+-|.++...
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrt--sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRT--SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCc--CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 4567777555679999999999999999987 66555555544 332 12356788888887654
No 232
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=33.04 E-value=79 Score=19.83 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=17.1
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHH
Q 037200 8 RRVFQMFDRNGDGKITRKELSDSLKN 33 (151)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~ 33 (151)
..-....|+++.++||.++++.++..
T Consensus 72 ~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 72 ADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 33445566666677888888887654
No 233
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=32.06 E-value=41 Score=18.19 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=9.1
Q ss_pred CCCcccHHHHHHHHHH
Q 037200 91 GDGYITVEELRSVLAS 106 (151)
Q Consensus 91 ~~g~is~~e~~~~l~~ 106 (151)
..|++..+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4556666666665543
No 234
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.93 E-value=58 Score=28.81 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCCCHHHH-HHHHHHhcCCCCCceeHHHHHHHHhcC
Q 037200 76 EEEDMKEAFNVFDQNGDGYITVEELRSVLASLGLKQGRTVEDC-KLMIKKVDVDGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~~~~~~~~-~~~~~~~d~~~~g~is~~ef~~~l~~~ 145 (151)
+-+...++|..+|++..|+|...++..+++.+..++.+....= +.+.-.+-...++.|++.+-+.+|...
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 3567789999999999999999999999999865543221111 223333344466677777766666543
No 235
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=31.93 E-value=67 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 22 ITRKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
++++||.+.|+..-..+++++.+++...|
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEEREEILEYY 29 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777777777655567777777766655
No 236
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=31.58 E-value=1.4e+02 Score=18.91 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=45.6
Q ss_pred HHHHHHHHhhccCCC-----CcccHHHHHHHHHHcC----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhc---
Q 037200 5 TELRRVFQMFDRNGD-----GKITRKELSDSLKNLG----IYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMD--- 72 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~-----g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~--- 72 (151)
..+++.|+.|..-++ -.|+-..|-.++...+ ..++.-+..-.|+.+-...-+.++|++|...+..+..
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 446667777665432 2355556666666543 2344444455555554444567889999777765532
Q ss_pred -cCChHHHHHHHHHhh
Q 037200 73 -ERDEEEDMKEAFNVF 87 (151)
Q Consensus 73 -~~~~~~~~~~~f~~~ 87 (151)
.++..+.+..+.+.+
T Consensus 92 k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLL 107 (180)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 233444455444444
No 237
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=31.55 E-value=52 Score=20.95 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=4.2
Q ss_pred HHHHHHHHHhh
Q 037200 40 DNELVQMIEKI 50 (151)
Q Consensus 40 ~~~~~~~~~~~ 50 (151)
..++...+..+
T Consensus 84 ~~Ql~AA~~Yl 94 (164)
T PF04558_consen 84 NLQLDAALKYL 94 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33343333333
No 238
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=31.36 E-value=1.6e+02 Score=22.58 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=45.9
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhc
Q 037200 9 RVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFD 88 (151)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 88 (151)
.+|+.+=+.+...++..++..++.+++......+--..|...+...+ .+.|..++.-+...+.. ...+...|..++
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel~D---~d~v~~~~~~f~ 564 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSELVD---YDLVTRGFTEFD 564 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhhcC---hhhhhhhHHHHH
Confidence 34555545566679999999999999887766555555544332222 35666666655554443 344555555554
No 239
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=31.30 E-value=1e+02 Score=17.24 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhcCCCCCc
Q 037200 77 EEDMKEAFNVFDQNGDGY 94 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~ 94 (151)
+..+..+|+.+..+++..
T Consensus 58 ~~EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 58 QMELEEAFRLYELNKDSE 75 (83)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 455666666665555443
No 240
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=30.67 E-value=35 Score=18.80 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=10.1
Q ss_pred HHHhhCCCCCCceeHHHHHHHHH
Q 037200 46 MIEKIDVNGDGYVDINEFGSLYQ 68 (151)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef~~~~~ 68 (151)
++..+..+..+.++..+-...+.
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK 64 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT
T ss_pred HHHHHHHCCCCcccHHHHHHHcc
Confidence 33443344556677766655444
No 241
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=30.09 E-value=1.9e+02 Score=20.81 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=42.3
Q ss_pred HcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 037200 33 NLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVL 104 (151)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l 104 (151)
+.|......+.....+ .|.||.+|=+..+... ....+...++.+++.++ ||.+||..++
T Consensus 284 KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~-d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 284 KFGFGRATDHASIDIR------SGRITREEAIELVKEY-DGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred hcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4677777666666654 5899999988888773 33444577888888885 6777777664
No 242
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.98 E-value=53 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 120 LMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 120 ~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
.+-.....+..|..||++|++.+-..+
T Consensus 76 ~i~~al~~~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 76 LIKTALRRHQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHhCC
Confidence 344455566788888999888776544
No 243
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=29.46 E-value=1.4e+02 Score=18.31 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=25.1
Q ss_pred CCceeHHHHHHHHHHH------h-ccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 037200 55 DGYVDINEFGSLYQTI------M-DERDEEEDMKEAFNVFDQNGDGYITVEELRSVLA 105 (151)
Q Consensus 55 ~~~i~~~ef~~~~~~~------~-~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~ 105 (151)
+|.|+..+|+..+..- . ....+...+..+|+.+ =|....+..|+.....
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khl--LGR~p~~~~Ei~~~~~ 97 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHL--LGRAPYNQAEISAYSQ 97 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHH--CSS--SSHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHH--hCCCCCCHHHHHHHHH
Confidence 6899999999887432 1 1123344555566655 2333344455444443
No 244
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.06 E-value=1.5e+02 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHH
Q 037200 77 EEDMKEAFNVFDQNGDGYITVEELRS 102 (151)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~is~~e~~~ 102 (151)
...+-.+|+..|.+++|.++-+||.-
T Consensus 476 nsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 476 NSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 34555666666666666666666643
No 245
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=27.92 E-value=1e+02 Score=18.18 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=4.9
Q ss_pred CHHHHHHHHHHh
Q 037200 114 TVEDCKLMIKKV 125 (151)
Q Consensus 114 ~~~~~~~~~~~~ 125 (151)
++.+++..+..+
T Consensus 68 sd~evd~~i~~i 79 (118)
T PF09312_consen 68 SDEEVDEAIANI 79 (118)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 246
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.60 E-value=1.3e+02 Score=17.15 Aligned_cols=51 Identities=24% Similarity=0.222 Sum_probs=27.0
Q ss_pred CcccHHHHHHHHHHcCCCCCCCHHHHH---HHHHHhcCCCCCceeHHHHHHHHhcCC
Q 037200 93 GYITVEELRSVLASLGLKQGRTVEDCK---LMIKKVDVDGDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 93 g~is~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~~g~is~~ef~~~l~~~~ 146 (151)
..++.+++..++...+.+. .+-++ ..+...+......++-+++++++..++
T Consensus 34 ~~~~~~~l~~~~~~~~~~~---~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p 87 (105)
T cd02977 34 EPPTKEELKELLAKLGLGV---EDLFNTRGTPYRKLGLADKDELSDEEALELMAEHP 87 (105)
T ss_pred CCCCHHHHHHHHHhcCCCH---HHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCc
Confidence 4456677777776665321 11111 233444333234577777777777654
No 247
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.59 E-value=73 Score=14.45 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=7.5
Q ss_pred HHHHHHHHHHcCCCC
Q 037200 97 VEELRSVLASLGLKQ 111 (151)
Q Consensus 97 ~~e~~~~l~~~~~~~ 111 (151)
-+++...|..-|+..
T Consensus 6 ~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPV 20 (38)
T ss_pred HHHHHHHHHHcCCCC
Confidence 345555555554443
No 248
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=27.11 E-value=71 Score=14.12 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHcCCCCCCCHHHH
Q 037200 94 YITVEELRSVLASLGLKQGRTVEDC 118 (151)
Q Consensus 94 ~is~~e~~~~l~~~~~~~~~~~~~~ 118 (151)
.++..++...++..|.+..-+..++
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K~~L 27 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTKAEL 27 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHH
Confidence 4677788888888877653344443
No 249
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=26.16 E-value=1.8e+02 Score=18.33 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=44.0
Q ss_pred cCCCCcccHHHHHHHHHHcCC-C-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCC
Q 037200 16 RNGDGKITRKELSDSLKNLGI-Y-IPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDG 93 (151)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~-~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 93 (151)
.+.+-.|+...+..++..+-. . .-..+.+.++..+ --+|+.++.. .+-+.++.....
T Consensus 7 ~dde~sLPkAtv~KmIke~lP~d~rvakeareliinc---------CvEFI~liSs------------EAneic~~e~KK 65 (156)
T KOG0871|consen 7 EDDELSLPKATVNKMIKEMLPKDVRVAKEARELIINC---------CVEFINLISS------------EANEICNKEAKK 65 (156)
T ss_pred ccccccCcHHHHHHHHHHhCCcccccchHHHHHHHHH---------HHHHHHHHHH------------HHHHHHhHHhcc
Confidence 345566777777777776533 1 1223344444332 1344444433 244566677778
Q ss_pred cccHHHHHHHHHHcCCCC
Q 037200 94 YITVEELRSVLASLGLKQ 111 (151)
Q Consensus 94 ~is~~e~~~~l~~~~~~~ 111 (151)
+|+.+-+.+.|..+|...
T Consensus 66 TIa~EHV~KALe~LgF~e 83 (156)
T KOG0871|consen 66 TIAPEHVIKALENLGFGE 83 (156)
T ss_pred cCCHHHHHHHHHHcchHH
Confidence 888888888888877653
No 250
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=25.92 E-value=79 Score=20.68 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=33.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 037200 5 TELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMI 47 (151)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 47 (151)
..++++|..||...=-.++.+++..++...|+......|+...
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 5678889999988888889999999988887776666665543
No 251
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.33 E-value=1.1e+02 Score=15.87 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.8
Q ss_pred CCcccHHHHHHHHH
Q 037200 19 DGKITRKELSDSLK 32 (151)
Q Consensus 19 ~g~i~~~e~~~~l~ 32 (151)
+|.++..++...+.
T Consensus 21 ~g~v~ls~l~~~~~ 34 (74)
T PF12872_consen 21 DGWVSLSQLGQEYK 34 (74)
T ss_dssp TSSEEHHHHHHHHH
T ss_pred CceEEHHHHHHHHH
Confidence 34455555555444
No 252
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=25.28 E-value=1.5e+02 Score=17.32 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=33.2
Q ss_pred ccHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCCCCceeHHHHHHHHh
Q 037200 95 ITVEELRSVLASLGLKQGRTVEDCKLMIKKVDVDGDGMVNYNEFKQMMK 143 (151)
Q Consensus 95 is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 143 (151)
+|.+++.+++...|... +.+-+..+++.+. ..+.++++....
T Consensus 17 ~ta~~I~~IL~aaGveV--e~~~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEI--EPERVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCc--CHHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 99999999999999987 8888888888872 246677666544
No 253
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=25.19 E-value=22 Score=15.52 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=9.8
Q ss_pred HHHHHhcCCCCCceeHH
Q 037200 120 LMIKKVDVDGDGMVNYN 136 (151)
Q Consensus 120 ~~~~~~d~~~~g~is~~ 136 (151)
.+..+=|.+++-.||.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 34555566666666654
No 254
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=24.99 E-value=2.1e+02 Score=20.79 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=25.6
Q ss_pred hhccCCCCcccHHHHHHHHHHcCCCCC----------HHHHHHHHHhhCCC
Q 037200 13 MFDRNGDGKITRKELSDSLKNLGIYIP----------DNELVQMIEKIDVN 53 (151)
Q Consensus 13 ~~d~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~~~~~~d~~ 53 (151)
..+.+..+.++..+-..++..++.... ..++..++......
T Consensus 133 I~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 133 IRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred eEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 333444567889999999988765322 24566666665433
No 255
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.69 E-value=82 Score=14.02 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHcCCCCCCCHHHHH
Q 037200 94 YITVEELRSVLASLGLKQGRTVEDCK 119 (151)
Q Consensus 94 ~is~~e~~~~l~~~~~~~~~~~~~~~ 119 (151)
.++..|++..++..|.+..-+..++.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K~~Li 28 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKKAELI 28 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSHHHHH
T ss_pred cCcHHHHHHHHHHCCCCCCCCHHHHH
Confidence 46777888888888777544444443
No 256
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=24.49 E-value=1.7e+02 Score=17.54 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Q 037200 92 DGYITVEELRSVLASLGLKQGRTVEDCKLMIKKV 125 (151)
Q Consensus 92 ~g~is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (151)
.|.++.+++..-+..-+... +..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~--t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTL--TRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCC--CHHHHHHHHHHH
Confidence 57777777777666555555 667766666554
No 257
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=23.79 E-value=40 Score=20.77 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=9.3
Q ss_pred CCCCceeHHHHHHHHhcC
Q 037200 128 DGDGMVNYNEFKQMMKGG 145 (151)
Q Consensus 128 ~~~g~is~~ef~~~l~~~ 145 (151)
+.+..|+++.+..+|.+.
T Consensus 37 ~~d~~iD~~~L~~yL~g~ 54 (140)
T PF13075_consen 37 NDDQSIDFERLAPYLGGI 54 (140)
T ss_pred cCCceecHHHHhhhcCCC
Confidence 344555555555555443
No 258
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=23.47 E-value=1.2e+02 Score=15.64 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=4.7
Q ss_pred CCCHHHHHHHHHhh
Q 037200 37 YIPDNELVQMIEKI 50 (151)
Q Consensus 37 ~~~~~~~~~~~~~~ 50 (151)
.++.+++..++..+
T Consensus 14 ~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 14 DLSREEAKAAFDAI 27 (66)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444433
No 259
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=23.42 E-value=2.1e+02 Score=18.23 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHcCCCC
Q 037200 84 FNVFDQNGDGYITVEELRSVLASLGLKQ 111 (151)
Q Consensus 84 f~~~D~~~~g~is~~e~~~~l~~~~~~~ 111 (151)
-..|-..+..+|+-+++...|..+|...
T Consensus 76 sekC~~EkRKTIngdDllwAm~tLGFe~ 103 (168)
T KOG0869|consen 76 SEKCQREKRKTINGDDLLWAMSTLGFEN 103 (168)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHcCcHh
Confidence 3445556788899999999999998864
No 260
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=23.29 E-value=1.5e+02 Score=16.41 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHH-HHHHhcCC------CCCceeHHHHHHHHhcCC
Q 037200 98 EELRSVLASLGLKQGRTVEDCKL-MIKKVDVD------GDGMVNYNEFKQMMKGGG 146 (151)
Q Consensus 98 ~e~~~~l~~~~~~~~~~~~~~~~-~~~~~d~~------~~g~is~~ef~~~l~~~~ 146 (151)
-++..+|-+-|.+. +.+++.. +...+..+ ....++.++++.+|...+
T Consensus 7 HeVL~mmi~~~~~~--t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 7 HEVLNMMIESGNPY--TKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHHHHcCCCc--CHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 35556665556655 6555544 34455443 234488888888887543
No 261
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.05 E-value=1.6e+02 Score=20.54 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKNLGIYI 38 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~ 38 (151)
.+.-+|..+...+.|.++.+++.++..++|+.-
T Consensus 179 TLsYifne~s~gk~~~~sfsdvVk~AKklGYTE 211 (364)
T KOG0455|consen 179 TLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTE 211 (364)
T ss_pred cHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCC
Confidence 456788999877889999999999999998753
No 262
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=22.92 E-value=75 Score=18.45 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=11.5
Q ss_pred CCCcccHHHHHHHHHHcCC
Q 037200 91 GDGYITVEELRSVLASLGL 109 (151)
Q Consensus 91 ~~g~is~~e~~~~l~~~~~ 109 (151)
.+|.|+.++|.+.|+.++.
T Consensus 3 ~d~~~~~~~F~~~W~sl~~ 21 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLPD 21 (114)
T ss_dssp TT----HHHHHHHHHHS-G
T ss_pred CCCccCHHHHHHHHHhCCc
Confidence 3689999999999998743
No 263
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=22.77 E-value=1.5e+02 Score=16.23 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCCC-CCceeHHHHHHHH
Q 037200 97 VEELRSVLASLGLKQGRTVEDCKLMIKKVDVDG-DGMVNYNEFKQMM 142 (151)
Q Consensus 97 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~-~g~is~~ef~~~l 142 (151)
.+++...|. |.+. +.+.+...+..++.+. -+.++.+++++++
T Consensus 44 i~~le~~L~--G~~~--~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPY--DREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBS--SHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCC--CHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 555666553 5555 6777777777774432 3467777777664
No 264
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=22.65 E-value=1.6e+02 Score=16.52 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=6.7
Q ss_pred ceeHHHHHHHHHH
Q 037200 57 YVDINEFGSLYQT 69 (151)
Q Consensus 57 ~i~~~ef~~~~~~ 69 (151)
.++-.+...++..
T Consensus 39 ~~T~~Qv~~il~~ 51 (95)
T PF14771_consen 39 CFTCAQVKQILSL 51 (95)
T ss_pred ceeHHHHHHHHHH
Confidence 3555555555544
No 265
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=22.51 E-value=1.4e+02 Score=15.88 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=3.1
Q ss_pred CCHHHHHHHH
Q 037200 38 IPDNELVQMI 47 (151)
Q Consensus 38 ~~~~~~~~~~ 47 (151)
.+++.+..+|
T Consensus 60 ~~ediLd~IF 69 (73)
T PF12631_consen 60 VTEDILDNIF 69 (73)
T ss_dssp --HHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 3333333333
No 266
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.22 E-value=1.9e+02 Score=17.30 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Q 037200 96 TVEELRSVLASLGLKQGRTVEDCKLMIKKV 125 (151)
Q Consensus 96 s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (151)
|..|++.++...+... +.++++.+..-.
T Consensus 81 t~~ElRsIla~e~~~~--s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVML--SDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCC--CHHHHHHHHHHH
Confidence 5667788887777776 777777776544
No 267
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=22.21 E-value=4.6e+02 Score=21.73 Aligned_cols=96 Identities=13% Similarity=0.224 Sum_probs=63.1
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHhcc------------
Q 037200 6 ELRRVFQMFDRNGDGKITRKELSDSLKNLGIYIPDNELVQMIEKIDVNGDGYVDINEFGSLYQTIMDE------------ 73 (151)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~------------ 73 (151)
.+.-+++.||+..+|.|..-.|+-.+-.+.....++....+|......+.. +.-..|-.++..+..-
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 344456789999999999999999998888778888888999988655543 3355565555443321
Q ss_pred CChHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 037200 74 RDEEEDMKEAFNVFDQNGDGYITVEELRSVL 104 (151)
Q Consensus 74 ~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l 104 (151)
......++.+|+.. ++.-.|+...|...+
T Consensus 550 sNvepsvrsCF~~v--~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 550 SNIEPSVRSCFQFV--NNKPEIEAALFLDWM 578 (966)
T ss_pred CCCChHHHHHHHhc--CCCCcchHHHHHHHh
Confidence 12233456677733 444556555555444
No 268
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=22.14 E-value=2.4e+02 Score=18.40 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHHhhCCCCCC--ceeHHHHHHHHHHHhcc-CChHHHHHHHHH-hhcCCCCCcccHHHHHHHHHHcCCCC
Q 037200 44 VQMIEKIDVNGDG--YVDINEFGSLYQTIMDE-RDEEEDMKEAFN-VFDQNGDGYITVEELRSVLASLGLKQ 111 (151)
Q Consensus 44 ~~~~~~~d~~~~~--~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~-~~D~~~~g~is~~e~~~~l~~~~~~~ 111 (151)
..+|..+-. ..| .++.+.|+..+...... .........+.+ .+-....-.||..||..+|..+|...
T Consensus 22 i~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~~ 92 (181)
T PF11422_consen 22 ISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPEE 92 (181)
T ss_dssp HHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSGG
T ss_pred HHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCch
Confidence 344544433 445 78999999888776632 223333333333 33334567899999999999999865
No 269
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=22.06 E-value=1.6e+02 Score=16.45 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHH
Q 037200 96 TVEELRSVLASLGLKQGRTVEDCKLM 121 (151)
Q Consensus 96 s~~e~~~~l~~~~~~~~~~~~~~~~~ 121 (151)
|.+++..+.+.....+ +++++..+
T Consensus 2 ~~~~v~~lA~La~L~l--~eee~~~~ 25 (93)
T TIGR00135 2 SDEEVKHLAKLARLEL--SEEEAESF 25 (93)
T ss_pred CHHHHHHHHHHhCCCC--CHHHHHHH
Confidence 4455555555555544 55554443
No 270
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=21.98 E-value=1.3e+02 Score=20.95 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC
Q 037200 79 DMKEAFNVFDQNGDGYITVEELRSVLASLGLKQ 111 (151)
Q Consensus 79 ~~~~~f~~~D~~~~g~is~~e~~~~l~~~~~~~ 111 (151)
.+..+|..+...+.|.++..++.++-+.+|...
T Consensus 179 TLsYifne~s~gk~~~~sfsdvVk~AKklGYTE 211 (364)
T KOG0455|consen 179 TLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTE 211 (364)
T ss_pred cHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCC
Confidence 467889999877899999999999999998865
No 271
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.92 E-value=1e+02 Score=14.09 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=15.6
Q ss_pred hccCCCCcccHHHHHHHHHHc
Q 037200 14 FDRNGDGKITRKELSDSLKNL 34 (151)
Q Consensus 14 ~d~~~~g~i~~~e~~~~l~~~ 34 (151)
-|-.+++.++...|...+..+
T Consensus 7 kdit~~ntltkrgfykligcl 27 (41)
T PF13121_consen 7 KDITKDNTLTKRGFYKLIGCL 27 (41)
T ss_pred eeccCCCeeehhhHHHHHHHH
Confidence 355578888888888877654
No 272
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.77 E-value=1.3e+02 Score=20.01 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.6
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 83 AFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 83 ~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
+...+|.+++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 4457899999999999998887654
No 273
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=21.63 E-value=90 Score=17.03 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=12.7
Q ss_pred cCCCCCceeHHHHHHHH
Q 037200 126 DVDGDGMVNYNEFKQMM 142 (151)
Q Consensus 126 d~~~~g~is~~ef~~~l 142 (151)
-.+..|.||++.|+...
T Consensus 12 ~~n~~G~iTl~gfLa~W 28 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQW 28 (76)
T ss_pred EEcCCCcCcHHHHHHHH
Confidence 45678888888888764
No 274
>PHA02105 hypothetical protein
Probab=21.53 E-value=1.4e+02 Score=15.38 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=24.2
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHhhCCCC--CCceeHHHHHHHH
Q 037200 21 KITRKELSDSLKNL---GIYIPDNELVQMIEKIDVNG--DGYVDINEFGSLY 67 (151)
Q Consensus 21 ~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~~~i~~~ef~~~~ 67 (151)
+++..+|..++..- ...+..+-+.++-..+.... --.++|+||...+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 35667777766542 23344444444444443322 2346777776554
No 275
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=2.6e+02 Score=18.60 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=41.8
Q ss_pred CCceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccH-HHHHHHHHHcCCCCCCCHHHHHHHHHH-hcCCCCCc
Q 037200 55 DGYVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITV-EELRSVLASLGLKQGRTVEDCKLMIKK-VDVDGDGM 132 (151)
Q Consensus 55 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~-~e~~~~l~~~~~~~~~~~~~~~~~~~~-~d~~~~g~ 132 (151)
+|.|+.+++...+...... ..++.+++.+ -+++||. +-|..++..++. +.+|+-..+.. ...+
T Consensus 11 DGTITl~Ds~~~itdtf~~----~e~k~l~~~v---ls~tiS~rd~~g~mf~~i~~----s~~Eile~llk~i~Id---- 75 (220)
T COG4359 11 DGTITLNDSNDYITDTFGP----GEWKALKDGV---LSKTISFRDGFGRMFGSIHS----SLEEILEFLLKDIKID---- 75 (220)
T ss_pred CCceEecchhHHHHhccCc----hHHHHHHHHH---hhCceeHHHHHHHHHHhcCC----CHHHHHHHHHhhcccC----
Confidence 6788888887777665443 2233444444 3444553 345666665554 33444443332 3222
Q ss_pred eeHHHHHHHHhcCCC
Q 037200 133 VNYNEFKQMMKGGGF 147 (151)
Q Consensus 133 is~~ef~~~l~~~~~ 147 (151)
=.+.+|.++.+.++.
T Consensus 76 p~fKef~e~ike~di 90 (220)
T COG4359 76 PGFKEFVEWIKEHDI 90 (220)
T ss_pred ccHHHHHHHHHHcCC
Confidence 246777777776553
No 276
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=21.05 E-value=1.6e+02 Score=15.89 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=27.1
Q ss_pred ceeHHHHHHHHHHHhccCChHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q 037200 57 YVDINEFGSLYQTIMDERDEEEDMKEAFNVFDQNGDGYITVEELRSVLASL 107 (151)
Q Consensus 57 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~is~~e~~~~l~~~ 107 (151)
..+|++|...+............+..-+..+-. +.-+..++..-+..+
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q---~~esv~~y~~rf~~l 73 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ---GNESVREYVNRFREL 73 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhhhhhc---cCCcHHHHHHHHHHH
Confidence 468888888887776554444444444555433 334555555444443
No 277
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.92 E-value=1.2e+02 Score=14.61 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=21.1
Q ss_pred CCccc-HHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 037200 19 DGKIT-RKELSDSLKNLGIYIPDNELVQMIEKI 50 (151)
Q Consensus 19 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (151)
.|.|+ .+++.+.+...|+..++..+..+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 45664 455555666678888888877776643
No 278
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=20.76 E-value=1.7e+02 Score=16.17 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 037200 25 KELSDSLKNLGIYIPDNELVQMI 47 (151)
Q Consensus 25 ~e~~~~l~~~~~~~~~~~~~~~~ 47 (151)
-|+..+|+++|-.++.++...+-
T Consensus 20 vEIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 20 VEILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHH
Confidence 35666888889888887766543
No 279
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=20.47 E-value=79 Score=18.21 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=7.9
Q ss_pred CCceeHHHHHHHHhc
Q 037200 130 DGMVNYNEFKQMMKG 144 (151)
Q Consensus 130 ~g~is~~ef~~~l~~ 144 (151)
+|.|+.+||..-+..
T Consensus 38 ~~~i~~EeF~~~Lq~ 52 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQE 52 (96)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 345666666665543
No 280
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=20.36 E-value=1.5e+02 Score=15.40 Aligned_cols=20 Identities=20% Similarity=0.497 Sum_probs=15.1
Q ss_pred CCCCCceeHHHHHHHHHHHh
Q 037200 52 VNGDGYVDINEFGSLYQTIM 71 (151)
Q Consensus 52 ~~~~~~i~~~ef~~~~~~~~ 71 (151)
.|.+|++|-..|++++..+.
T Consensus 5 TN~dGrLSTT~~iQffg~lv 24 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFFGALV 24 (60)
T ss_pred cCCCCcEehHHHHHHHHHHH
Confidence 35588998888888886653
Done!