BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037201
PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCLLIRNQGRFYNND
KLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGYGFADELKRAWFCVRN
VRFGCLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK

High Scoring Gene Products

Symbol, full name Information P value
AT4G12240 protein from Arabidopsis thaliana 1.3e-31
AT5G52010 protein from Arabidopsis thaliana 1.2e-12

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037201
        (177 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139119 - symbol:AT4G12240 "AT4G12240" species...   212  1.3e-31   2
TAIR|locus:2173038 - symbol:AT5G52010 "AT5G52010" species...   128  1.2e-12   2


>TAIR|locus:2139119 [details] [associations]
            symbol:AT4G12240 "AT4G12240" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR007087 InterPro:IPR015880 PROSITE:PS00028
            PROSITE:PS50157 SMART:SM00355 GO:GO:0005739 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008270 GO:GO:0003700 EMBL:AL161533
            EMBL:AL080318 UniGene:At.48849 UniGene:At.66589 InterPro:IPR021139
            Pfam:PF01936 HOGENOM:HOG000240853 EMBL:BT005409 EMBL:AK118936
            IPI:IPI00531382 PIR:T48134 RefSeq:NP_192961.1
            ProteinModelPortal:Q9STI7 SMR:Q9STI7 EnsemblPlants:AT4G12240.1
            GeneID:826832 KEGG:ath:AT4G12240 TAIR:At4g12240 eggNOG:NOG321752
            InParanoid:Q9STI7 OMA:KRAGFWV PhylomeDB:Q9STI7
            ProtClustDB:CLSN2685569 Genevestigator:Q9STI7 Uniprot:Q9STI7
        Length = 364

 Score = 212 (79.7 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
 Identities = 49/102 (48%), Positives = 63/102 (61%)

Query:     1 PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQVVREQRKKENCL-LIRNQG----- 54
             P ++A+V+L+   SSF  VK M+A AN HAF YVP  VREQRK    L  + N+G     
Sbjct:    55 PPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVREQRKDRKLLNKLENKGLVKPP 114

Query:    55 ----------RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG 86
                       RFY N+KL+NHF+QIHE E +KR  QIES++G
Sbjct:   115 EPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKG 156

 Score = 212 (79.7 bits), Expect = 5.8e-17, P = 5.8e-17
 Identities = 55/120 (45%), Positives = 71/120 (59%)

Query:    55 RFYNNDKLVNHFRQIHEGEQKKRSNQIESARG------------KMEKYKMAVSAILTPK 102
             RFY N+KL+NHF+QIHE E +KR  QIES++G            K+EKYK A   +LTPK
Sbjct:   125 RFYTNEKLINHFKQIHETENQKRMRQIESSKGHRRVRLVAKYSMKIEKYKRAARNVLTPK 184

Query:   103 VGYGFADELKRAWFCVRNVRFGCLMVVSDDS---NFVEVFQEATLRCLKMVVVGDMSDGA 159
              GYG ADELKRA F V+ V        +D +   + VEV  +  + C+  V+V D SD A
Sbjct:   185 EGYGLADELKRAGFWVKMV--SDKPDAADKALKEHLVEVMDKREVECV--VLVSDDSDFA 240

 Score = 157 (60.3 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query:   125 CLMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
             C+++VSDDS+F  +  EA  RCL+ VV+GD ++GALKR+A+  +SW ++ MGK
Sbjct:   229 CVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSWKEVTMGK 281


>TAIR|locus:2173038 [details] [associations]
            symbol:AT5G52010 "AT5G52010" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002688
            GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 EMBL:AB015478
            EMBL:AY039592 EMBL:AY129489 IPI:IPI00522595 RefSeq:NP_200014.1
            UniGene:At.9332 ProteinModelPortal:Q9FJ91 SMR:Q9FJ91 IntAct:Q9FJ91
            PRIDE:Q9FJ91 EnsemblPlants:AT5G52010.1 GeneID:835276
            KEGG:ath:AT5G52010 TAIR:At5g52010 HOGENOM:HOG000240853
            InParanoid:Q9FJ91 OMA:DNKPPRG PhylomeDB:Q9FJ91
            ProtClustDB:CLSN2687448 Genevestigator:Q9FJ91 Uniprot:Q9FJ91
        Length = 396

 Score = 128 (50.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query:    59 NDKLVNHFRQIHEGEQKKRSNQIESARGKM------------EKYKMAVSAILTPKVGYG 106
             N  L  HF+Q+HE E++K+ N++ S +GK             EKY  A  ++LTPKVGYG
Sbjct:   164 NLDLKKHFKQLHERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYG 223

Query:   107 FADELKRAWFCVRNV 121
                EL+RA   V+ V
Sbjct:   224 LEAELRRAGVYVKTV 238

 Score = 114 (45.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
 Identities = 33/103 (32%), Positives = 53/103 (51%)

Query:     1 PHFEASVELKKLISSFEVVKYMVANANSHAFGYVPQ-VVREQRKKENCLLIRNQGRF--- 56
             P +EA+  L+K+      V  + A AN HAF ++P  VV E+R++ N   +  +G     
Sbjct:    90 PPYEAATALRKVAEKLGRVVEISAYANRHAFIHLPHWVVEERRERRNLDFMERKGEVTPI 149

Query:    57 --Y----------NNDKLVNHFRQIHEGEQKKRSNQIESARGK 87
               Y           N  L  HF+Q+HE E++K+ N++ S +GK
Sbjct:   150 DPYICGVCGRKCKTNLDLKKHFKQLHERERQKKVNRMRSLKGK 192

 Score = 77 (32.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query:   126 LMVVSDDSNFVEVFQEATLRCLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 177
             L++VSDD +F ++ ++A    L  +VV DM D AL R A+ +  WS +  G+
Sbjct:   264 LVLVSDDKDFSDMLRKAREADLGTLVVSDM-DRALGRHADLWVPWSGVEKGE 314


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       177   0.00084  109 3  11 22  0.36    32
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  156 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.74u 0.10s 16.84t   Elapsed:  00:00:01
  Total cpu time:  16.74u 0.10s 16.84t   Elapsed:  00:00:01
  Start:  Sat May 11 03:48:48 2013   End:  Sat May 11 03:48:49 2013

Back to top