BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037201
         (177 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5UCC9|MNMC_HAEIE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
           protein MnmC OS=Haemophilus influenzae (strain PittEE)
           GN=mnmC PE=3 SV=1
          Length = 670

 Score = 34.3 bits (77), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 56  FYNNDKLVNHFRQIHEGEQKKRSNQIESARGKMEKYKMAVSAILTPKVGY-GFAD---EL 111
           F+   KL   FRQ HE    KR N I       EKY + ++A+L   + Y  F D    L
Sbjct: 72  FFAVTKLFREFRQQHENHPLKRLNFIS-----FEKYPLKITALLQAHLAYPQFEDLSAHL 126

Query: 112 KRAW 115
           +R W
Sbjct: 127 QRYW 130


>sp|C5D391|COAX_GEOSW Type III pantothenate kinase OS=Geobacillus sp. (strain WCH70)
           GN=coaX PE=3 SV=1
          Length = 258

 Score = 30.8 bits (68), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 64  NHFRQIHEGEQKKRSNQIESARGKME-KYKMAVSAILTPKVGYGFAD 109
           N    +++G++ K   +IE++RGK E +Y M + A+L   VG  F+D
Sbjct: 11  NTVLGVYDGDELKHHWRIETSRGKTEDEYAMTIKALLN-HVGLQFSD 56


>sp|O22436|CHLI_TOBAC Magnesium-chelatase subunit ChlI, chloroplastic OS=Nicotiana
           tabacum GN=CHLI PE=2 SV=1
          Length = 426

 Score = 30.8 bits (68), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 31  FGYVPQVVREQRKKENCLLIRNQGRFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKM 88
           FG   QV   +  +    ++  + RF  N K    FR+ ++ EQ+K  NQI+SAR  +
Sbjct: 285 FGMHAQVGTVRDAELRVKIVEERARFDKNPK---EFRESYKAEQEKLQNQIDSARNAL 339


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,505,843
Number of Sequences: 539616
Number of extensions: 2207859
Number of successful extensions: 6550
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6550
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)