BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037202
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 197/341 (57%), Gaps = 38/341 (11%)
Query: 1 MFSIGKSVSGFPLWVIEISDKPGVEEP-EPAFKFIGNVHGDEPVGRELLILLANWICDNH 59
++S+GKSV L+V+EISD PG+ E EP FK+IGN+HG+E VGRELL+ L ++C N
Sbjct: 33 LYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF 92
Query: 60 VKDSLARLIVENMHLHILPSMNPDGYALKRRG---------NANNIDLNRDFPDQFFPMN 110
D +V++ +HI+PSMNPDGY + G N+NN DLNR+FPDQFF +
Sbjct: 93 GTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVT 152
Query: 111 NDEEACQPETRAIMSWVRQIHFTASASLHGVISLIQRY-----------YYGCPDDEAFQ 159
+ QPET A+MSW++ F SA+LHG SL+ Y Y PDD FQ
Sbjct: 153 ---DPPQPETLAVMSWLKTYPFVLSANLHGG-SLVVNYPFDDDEQGIAIYSKSPDDAVFQ 208
Query: 160 FLASVYSRSHYNMSLSTE---------FQGGIINGASWYPIYGGMQDWNYIYGGCFELTL 210
LA YS+ + M + F GI NGA WY + GGMQDWNY+ CFE+T+
Sbjct: 209 QLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTI 268
Query: 211 EISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRP-LPGSITIKGIN 269
E+ K+P AEELP WE N+ S+L + V G+ G + + GR L +I++ IN
Sbjct: 269 ELGCVKYPKAEELPKYWEQNRRSLLQFIKQ-VHRGIWGFVLDATDGRGILNATISVADIN 327
Query: 270 YTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLE 310
+ V + DY+RLL G Y+V AS GY P + ++ ++
Sbjct: 328 HPVTTYKD-GDYWRLLVQGT-YKVTASARGYDPVTKTVEVD 366
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 202/359 (56%), Gaps = 57/359 (15%)
Query: 1 MFSIGKSVSGFPLWVIEISDKPGVEEP-EPAFKFIGNVHGDEPVGRELLILLANWICDNH 59
++SIG+SV G L+V+E SD PG+ EP EP K++GN+HG+E +GREL++ L+ ++C+
Sbjct: 29 VYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEALGRELMLQLSEFLCEE- 87
Query: 60 VKDSLARLI--VENMHLHILPSMNPDGYA------------LKRRGNANNIDLNRDFPD- 104
++ R++ +++ +HILPSMNPDGY L R NAN +DLNR+FPD
Sbjct: 88 FRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNRNFPDL 147
Query: 105 --------------QFFPM-NNDEEACQPETRAIMSWVRQIHFTASASLHGVISLIQRYY 149
P+ +N + +PETRA++ W+ +F SA+LHG +++ Y
Sbjct: 148 NTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIRWMHSFNFVLSANLHGG-AVVANYP 206
Query: 150 YG-----------------CPDDEAFQFLASVYSRSHYNM----SLSTEFQGGIINGASW 188
Y PDD+ FQ LA VYS +H M + F GI NGASW
Sbjct: 207 YDKSFEHRVRGVRRTASTPTPDDKLFQKLAKVYSYAHGWMFQGWNCGDYFPDGITNGASW 266
Query: 189 YPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRG 248
Y + GMQD+NY++ CFE+TLE+S DK+P EEL W NK +++ + V G++G
Sbjct: 267 YSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQ-VHQGIKG 325
Query: 249 RIFSSDSGRPLPGSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSI 307
+ + I++ GIN+ V +G DY+RLL PG Y V A+ PGY P++ ++
Sbjct: 326 MVLDQNYNNLANAVISVSGINHDVTSG-DHGDYFRLLLPGI-YTVSATAPGYDPETVTV 382
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 199/373 (53%), Gaps = 44/373 (11%)
Query: 1 MFSIGKSVSGFPLWVIEISDKPGVEEPE-PAFKFIGNVHGDEPVGRELLILLANWICDNH 59
+ SIGKSV G LWV+ + P P FK++ N+HGDE VGRELL+ L +++ +
Sbjct: 28 LHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSD 87
Query: 60 VKDSLARLIVENMHLHILPSMNPDGY-ALKR--------RGNANNIDLNRDFPDQFFPMN 110
KD ++ + +HI+PSMNPDG+ A+K+ R N N DLNR+FPD F
Sbjct: 88 GKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAF---E 144
Query: 111 NDEEACQPETRAIMSWVRQIHFTASASLHGVISLIQRYYYG--------------CPDDE 156
+ + QPET A+M W++ F SA+LHG +L+ Y + PDD+
Sbjct: 145 YNNVSRQPETVAVMKWLKTETFVLSANLHGG-ALVASYPFDNGVQATGALYSRSLTPDDD 203
Query: 157 AFQFLASVYSRSHYNMSLSTE------FQGGIINGASWYPIYGGMQDWNYIYGGCFELTL 210
FQ+LA Y+ + NM E F G+ NG SWYP+ GGMQD+NYI+ CFE+TL
Sbjct: 204 VFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITL 263
Query: 211 EISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLPGSITIKGINY 270
E+S K+P E+LP+ W NK S++ + V GV+G++F + G PLP I
Sbjct: 264 ELSCCKYPREEKLPSFWNNNKASLIEYIKQ-VHLGVKGQVFDQN-GNPLPNVIVEVQDRK 321
Query: 271 TVNAGRA--FADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE-----TATADFILDPDS 323
+ R + +YY LL PG Y + ++PG+ P T + + E +A IL P
Sbjct: 322 HICPYRTNKYGEYYLLLLPGS-YIINVTVPGHDPHITKVIIPEKSQNFSALKKDILLPFQ 380
Query: 324 ALEDNTPRSICDC 336
D+ P S C
Sbjct: 381 GQLDSIPVSNPSC 393
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/357 (36%), Positives = 192/357 (53%), Gaps = 43/357 (12%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEP-EPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
+G+S+ G L ++IS P K+I N+HGDE VGR+LL+ +A ++ NH +
Sbjct: 66 LGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERI 125
Query: 63 SLARLIVENMHLHILPSMNPDGYALKR------------RGNANNIDLNRDFPDQFFPMN 110
S +V + ++++P+MNPDGYAL + RGNA NIDLNRDFPD+ +
Sbjct: 126 SDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSH 185
Query: 111 NDE---EACQPETRAIMSWVRQIHFTASASLHGVISLIQRYYYG-------------CPD 154
+ ++ QPET A+++W+ F SA+ HG +++ Y Y PD
Sbjct: 186 VHQLRAQSRQPETAALVNWIVSKPFVLSANFHGG-AVVASYPYDNSLAHNECCEESLTPD 244
Query: 155 DEAFQFLASVYSRSHYNM----SLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTL 210
D F+ LA YS +H M + + F GGI NGA WY + GGMQD+NY + CFELT+
Sbjct: 245 DRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTI 304
Query: 211 EISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGIN 269
E+S K+P+A LP W+ NK S+L L+ G++G + + SG P+ ++ + G+
Sbjct: 305 ELSCCKYPAASTLPQEWQRNKASLLQLLRQ-AHIGIKG-LVTDASGFPIADANVYVAGLE 362
Query: 270 YTVNAGRAFADYYRLLTPGKRYEVMASMPGYK---PKSTSIW--LEETATADFILDP 321
+Y+RLLTPG Y V AS GY+ P+ + +E DF L P
Sbjct: 363 EKPMRTSKRGEYWRLLTPG-LYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAP 418
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 36/242 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S P++V++ S GV P A +H E + + I A I ++ +D
Sbjct: 38 IGHSFENRPMYVLKFSTGKGVRRP--AVWLNAGIHSREWISQATAIWTARKIVSDYQRDP 95
Query: 64 LARLIVENMHLHILPSMNPDGYA-------LKRRGNANN-------IDLNRDFPDQFFPM 109
I+E M + +LP NPDGY L R+ + N D NR++ F
Sbjct: 96 AITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGK 155
Query: 110 NNDEEAC-----------QPETRAIMSWVRQI-HFTASASLHGVISLIQRYYYG-----C 152
+ C + E ++++ ++++ +F LH L+ Y YG
Sbjct: 156 GASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLM-YPYGYSVKKA 214
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD E +A + +++ ++S TE+Q G + YP G DW Y G F T E+
Sbjct: 215 PDAEELDKVARLAAKALASVS-GTEYQVGPT-CTTVYPASGSSIDWAYDNGIKFAFTFEL 272
Query: 213 SD 214
D
Sbjct: 273 RD 274
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 36/242 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S P++V++ S GV P A +H E + + I A I ++ +D
Sbjct: 34 IGHSFENRPMYVLKFSTGKGVRRP--AVWLNAGIHSREWISQATAIWTARKIVSDYQRDP 91
Query: 64 LARLIVENMHLHILPSMNPDGYA-------LKRRGNANN-------IDLNRDFPDQFFPM 109
I+E M + +LP NPDGY L R+ + N D NR++ F
Sbjct: 92 AITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGK 151
Query: 110 NNDEEAC-----------QPETRAIMSWVRQI-HFTASASLHGVISLIQRYYYG-----C 152
+ C + E ++++ ++++ +F LH L+ Y YG
Sbjct: 152 GASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLM-YPYGYSVKKA 210
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD E +A + +++ ++S TE+Q G + YP G DW Y G F T E+
Sbjct: 211 PDAEELDKVARLAAKALASVS-GTEYQVGPT-CTTVYPASGSSIDWAYDNGIKFAFTFEL 268
Query: 213 SD 214
D
Sbjct: 269 RD 270
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 36/242 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S P++V++ S GV P A +H E + + I A I ++ +D
Sbjct: 36 IGHSFENRPMYVLKFSTGKGVRRP--AVWLNAGIHSREWISQATAIWTARKIVSDYQRDP 93
Query: 64 LARLIVENMHLHILPSMNPDGYA-------LKRRGNANN-------IDLNRDFPDQFFPM 109
I+E M + +LP NPDGY L R+ + N D NR++ F
Sbjct: 94 AITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGK 153
Query: 110 NNDEEAC-----------QPETRAIMSWVRQI-HFTASASLHGVISLIQRYYYG-----C 152
+ C + E ++++ ++++ +F LH L+ Y YG
Sbjct: 154 GASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLM-YPYGYSVKKA 212
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD E +A + +++ ++S TE+Q G + YP G DW Y G F T E+
Sbjct: 213 PDAEELDKVARLAAKALASVS-GTEYQVGPT-CTTVYPASGSSIDWAYDNGIKFAFTFEL 270
Query: 213 SD 214
D
Sbjct: 271 RD 272
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 36/242 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S P++V++ S GV P A +H E + + I A I ++ +D
Sbjct: 132 IGHSFENRPMYVLKFSTGKGVRRP--AVWLNAGIHSREWISQATAIWTARKIVSDYQRDP 189
Query: 64 LARLIVENMHLHILPSMNPDGYA-------LKRRGNANN-------IDLNRDFPDQFFPM 109
I+E M + +LP NPDGY L R+ + N D NR++ F
Sbjct: 190 AITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGK 249
Query: 110 NNDEEAC-----------QPETRAIMSWVRQI-HFTASASLHGVISLIQRYYYG-----C 152
+ C + E ++++ ++++ +F LH L+ Y YG
Sbjct: 250 GASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLM-YPYGYSVKKA 308
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD E +A + +++ ++S TE+Q G + YP G DW Y G F T E+
Sbjct: 309 PDAEELDKVARLAAKALASVS-GTEYQVGPT-CTTVYPASGSSIDWAYDNGIKFAFTFEL 366
Query: 213 SD 214
D
Sbjct: 367 RD 368
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 2 FSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK 61
FSIGKS G LW ++ISD G +E EP + H E + E+ + + N+
Sbjct: 33 FSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNL 92
Query: 62 DSLARLIVENMHLHILPSMNPDG 84
DS +V N ++I+ ++NPDG
Sbjct: 93 DSRITNLVNNREIYIVFNINPDG 115
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 2 FSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK 61
FSIGKS G LW ++ISD G +E EP + H E + E+ + + N+
Sbjct: 33 FSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNL 92
Query: 62 DSLARLIVENMHLHILPSMNPDG 84
DS +V N ++I+ ++NPDG
Sbjct: 93 DSRITNLVNNREIYIVFNINPDG 115
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 2 FSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK 61
FSIGKS G LW ++ISD G +E EP + H E + E+ + + N+
Sbjct: 33 FSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNL 92
Query: 62 DSLARLIVENMHLHILPSMNPDG 84
DS +V N ++I+ ++NPDG
Sbjct: 93 DSRITNLVNNREIYIVFNINPDG 115
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 2 FSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK 61
FSIGKS G LW ++ISD G +E EP + H E + E+ + + N+
Sbjct: 33 FSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNL 92
Query: 62 DSLARLIVENMHLHILPSMNPDG 84
DS +V N ++I+ ++NPDG
Sbjct: 93 DSRITNLVNNREIYIVFNINPDG 115
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 102/261 (39%), Gaps = 40/261 (15%)
Query: 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
+IG S P+ V++ S +PA +H E V + + AN I ++ KD
Sbjct: 31 NIGSSFENRPMNVLKFS----TGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKD 86
Query: 63 SLARLIVENMHLHILPSMNPDGYALKRRGN---------------ANNIDLNRDFPDQFF 107
I++ + + +LP NPDGY + N +D NR++ F
Sbjct: 87 PSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSAGSLCVGVDPNRNWDAGFG 146
Query: 108 PMNNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQ-RYYYGCPD 154
C + E ++I+ +++ A LH L+ Y Y C
Sbjct: 147 GPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGYKCTK 206
Query: 155 DEAFQFLASVYSRSHYNMSL--STEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
+ F L+ V ++ ++S T+++ G I Y GG DW+Y YG + E+
Sbjct: 207 LDDFDELSEVAQKAAQSLSRLHGTKYKVGPICSVI-YQASGGSIDWSYDYGIKYSFAFEL 265
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+ + LPT E
Sbjct: 266 RDTGRYGFLLPARQILPTAEE 286
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 39/260 (15%)
Query: 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
+IG S P+ V++ S +PA +H E V + + AN I ++ KD
Sbjct: 130 NIGSSFENRPMNVLKFS----TGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKD 185
Query: 63 SLARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFP 108
I++ + + +LP NPDGY + N +D NR++ F
Sbjct: 186 PSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGG 245
Query: 109 MNNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQ-RYYYGCPDD 155
C + E ++I+ +++ A LH L+ Y Y C
Sbjct: 246 PGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGYKCTKL 305
Query: 156 EAFQFLASVYSRSHYNM-SL-STEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEIS 213
+ F L+ V ++ ++ SL T+++ G I Y GG DW+Y YG + E+
Sbjct: 306 DDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVI-YQASGGSIDWSYDYGIKYSFAFELR 364
Query: 214 DDK-----WPSAEELPTIWE 228
D P+ + LPT E
Sbjct: 365 DTGRYGFLLPARQILPTAEE 384
>pdb|3D4U|A Chain A, Bovine Thrombin-Activatable Fibrinolysis Inhibitor (Tafia)
In Complex With Tick-Derived Carboxypeptidase Inhibitor
Length = 309
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S +PL+V+++S K + + A +H E + + + + K+
Sbjct: 35 IGSSYEKYPLYVLKVSKKE--QRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEK 92
Query: 64 LARLIVENMHLHILPSMNPDGY--------------ALKRRGNANNIDLNRDFPDQFF-- 107
+ ++++M +I+P +N DGY +L + DLNR+F + +
Sbjct: 93 MHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCG 152
Query: 108 ----PMNNDEEAC------QPETRAIMSWVRQ--IHFTASASLHGVIS-LIQRYYYG--- 151
+ E C +PE +A+ ++R+ H A S+H ++ Y Y
Sbjct: 153 EGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSR 212
Query: 152 CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
D E +A + N+ + + G S Y GG DW Y G + T E
Sbjct: 213 SKDHEELSLVAREAVFAMENIHRNIRYTHG-SGSESLYLAPGGSDDWIYDLGIKYSFTFE 271
Query: 212 ISD 214
+ D
Sbjct: 272 LRD 274
>pdb|3DGV|A Chain A, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|B Chain B, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|C Chain C, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3OSL|A Chain A, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
pdb|3OSL|C Chain C, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
Length = 401
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S +PL+V+++S K + + A +H E + + + + K+
Sbjct: 127 IGSSYEKYPLYVLKVSKKE--QRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEK 184
Query: 64 LARLIVENMHLHILPSMNPDGY--------------ALKRRGNANNIDLNRDFPDQFF-- 107
+ ++++M +I+P +N DGY +L + DLNR+F + +
Sbjct: 185 MHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCG 244
Query: 108 ----PMNNDEEAC------QPETRAIMSWVRQ--IHFTASASLHGVIS-LIQRYYYG--- 151
+ E C +PE +A+ ++R+ H A S+H ++ Y Y
Sbjct: 245 EGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSR 304
Query: 152 CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
D E +A + N+ + + G S Y GG DW Y G + T E
Sbjct: 305 SKDHEELSLVAREAVFAMENIHRNIRYTHG-SGSESLYLAPGGSDDWIYDLGIKYSFTFE 363
Query: 212 ISD 214
+ D
Sbjct: 364 LRD 366
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +++ +D
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NPDG+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVEALKSLYGTSYKYGSII--TTIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +++ +D
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NPDG+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVEALKSLYGTSYKYGSII--TTIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|4AXV|A Chain A, Biochemical And Structural Characterization Of The Mpaa
Amidase As Part Of A Conserved Scavenging Pathway For
Peptidoglycan Derived Peptides In Gamma-Proteobacteria
Length = 243
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 61/154 (39%), Gaps = 38/154 (24%)
Query: 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
S GKSV G PL P E + HGDE +A C
Sbjct: 25 SYGKSVLGAPLLYF-----PAQVESNSRGLILAGTHGDETAS------IAGLSC------ 67
Query: 63 SLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFF-------------PM 109
+L L E + ++ S NPD L R NAN +DLNR FP Q + P+
Sbjct: 68 ALRSLPAECLKHDVILSXNPDANQLGTRANANQVDLNRAFPTQNWTEHGTVYRWSSHTPV 127
Query: 110 NN------DEEACQPETRAIMSWV--RQIHFTAS 135
+ D+E +PE A++S + R+ F S
Sbjct: 128 RDVKVKTGDKEQLEPEVDALISLIELRRPKFVVS 161
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +++ +D
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NPDG+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVEALKSLYGTSYKYGSII--TTIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +++ +D
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NPDG+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVAALKSLYGTSYKYGSIIT--TIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +++ +D
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NPDG+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVAALKSLYGTSYKYGSIIT--TIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +N+ ++
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NP+G+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPNGFAFTHSENRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKNHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVAALKSLYGTSYKYGSII--TTIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +N+ ++
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NP+G+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPNGFAFTHSENRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKNHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVAALKSLYGTSYKYGSII--TTIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG+S G P++V++ S PA +H E + + + A +N+ ++
Sbjct: 38 IGRSYEGRPIYVLKFSTGG---SNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNP 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN--------------ANNIDLNRDFPDQFFPM 109
I+++M + + NP+G+A N +D NR++ F
Sbjct: 95 SFTAILDSMDIFLEIVTNPNGFAFTHSENRLWRKTRSVTSSSLCVGVDANRNWDAGFGKA 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ +F A S+H L+ Y YG
Sbjct: 155 GASSSPCSETYHGKYANSEVEVKSIVDFVKNHGNFKAFLSIHSYSQLL-LYPYGYTTQSI 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD +A + ++ ++ G II + Y GG DW+Y G + T E+
Sbjct: 214 PDKTELNQVAKSAVAALKSLYGTSYKYGSII--TTIYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAQE 292
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S +PL+V+++S K + + A +H E + + I +
Sbjct: 150 IGSSFEKYPLYVLKVSGKE--QTAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIG 207
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN----------ANN----IDLNRDFPDQFF-- 107
++ + +++P +N DGY + N ANN DLNR+F + +
Sbjct: 208 QYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNRNFASKHWCE 267
Query: 108 ----PMNNDEEAC------QPETRAIMSWVRQI--HFTASASLHGVIS-LIQRYYY---G 151
+ E C +PE +A+ S++R+ A S+H ++ Y Y
Sbjct: 268 EGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSK 327
Query: 152 CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
D E +AS R+ S +T + G + Y GG DW Y G + T+E
Sbjct: 328 SKDHEELSLVASEAVRAIEKTSKNTRYTHGH-GSETLYLAPGGGDDWIYDLGIKYSFTIE 386
Query: 212 ISD 214
+ D
Sbjct: 387 LRD 389
>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
Fibrinolys Inhibitor, Tafia, In Complex With
Tick-Derived Funnelin Inh Tci
Length = 309
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S +PL+V+++S K + + A +H E + + I +
Sbjct: 35 IGSSFEKYPLYVLKVSGKE--QAAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIG 92
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN----------ANN----IDLNRDFPDQFF-- 107
++ + +++P +N DGY + N ANN DLNR+F + +
Sbjct: 93 QYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNRNFASKHWCE 152
Query: 108 ----PMNNDEEAC------QPETRAIMSWVRQI--HFTASASLHGVIS-LIQRYYY---G 151
+ E C +PE +A+ S++R+ A S+H ++ Y Y
Sbjct: 153 EGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSK 212
Query: 152 CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
D E +AS R+ S +T + G + Y GG DW Y G + T+E
Sbjct: 213 SKDHEELSLVASEAVRAIEKTSKNTRYTHGH-GSETLYLAPGGGDDWIYDLGIKYSFTIE 271
Query: 212 ISD 214
+ D
Sbjct: 272 LRD 274
>pdb|1PCA|A Chain A, Three Dimensional Structure Of Porcine Pancreatic
Procarboxypeptidase A. A Comparison Of The A And B
Zymogens And Their Determinants For Inhibition And
Activation
Length = 403
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 107/271 (39%), Gaps = 58/271 (21%)
Query: 2 FSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK 61
IG+S G P++V++ S PA +H E + + + A I +N+ +
Sbjct: 131 LQIGRSYEGRPIYVLKFSTGG---SNRPAIWIDSGIHSREWITQASGVWFAKKITENYGQ 187
Query: 62 DSLARLIVENMHLHILPSMNPDGYAL---------KRRGNAN-----NIDLNRDFPDQFF 107
+S I+++M + + NP+G+A K R A+ D NR++ F
Sbjct: 188 NSSFTAILDSMDIFLEIVTNPNGFAFTHSDNRLWRKTRSKASGSLCVGSDSNRNWDAGFG 247
Query: 108 PMNNDEEAC-----------QPETRAIMSWVRQI-HFTASASLHGVISLIQRYYYG---- 151
C + E ++I +V+ + A S+H L+ Y YG
Sbjct: 248 GAGASSSPCAETYHGKYPNSEVEVKSITDFVKNNGNIKAFISIHSYSQLL-LYPYGYKTQ 306
Query: 152 CPDDE---------AFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIY 202
P D+ A L S+Y S+ S+ T +I AS GG+ DW Y
Sbjct: 307 SPADKSELNQIAKSAVAALKSLYGTSYKYGSIIT-----VIYQAS-----GGVIDWTYNQ 356
Query: 203 GGCFELTLEISDDK-----WPSAEELPTIWE 228
G + + E+ D P+++ +PT E
Sbjct: 357 GIKYSFSFELRDTGRRGFLLPASQIIPTAQE 387
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG S +PL+V+++S K + + A +H E + + I +
Sbjct: 150 IGSSFEKYPLYVLKVSGKE--QTAKNAIWIDCGIHAREWISPAFCLWFIGHITQFYGIIG 207
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGN----------ANN----IDLNRDFPDQFF-- 107
++ + +++P +N DGY + N ANN DLNR+F + +
Sbjct: 208 QYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNRNFASKHWCE 267
Query: 108 ----PMNNDEEAC------QPETRAIMSWVRQI--HFTASASLHGVIS-LIQRYYY---G 151
+ E C +PE +A+ S++R+ A S+H ++ Y Y
Sbjct: 268 EGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSK 327
Query: 152 CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
D E +AS R+ +S + + G + Y GG DW Y G + T+E
Sbjct: 328 SKDHEELSLVASEAVRAIEKISKNIRYTYGQ-GSETLYLAPGGGDDWIYDLGIKYSFTIE 386
Query: 212 ISD 214
+ D
Sbjct: 387 LRD 389
>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
Human Carboxypeptidase A1
Length = 307
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG + G P++V++ S PA +H E V + + A I ++ +D+
Sbjct: 37 IGNTYEGRPIYVLKFSTGG---SKRPAIWIDTGIHSREWVTQASGVWFAKKITQDYGQDA 93
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGNAN--------------NIDLNRDFPDQFFPM 109
I++ + + + NPDG+A N +D NR++ F
Sbjct: 94 AFTAILDTLDIFLEIVTNPDGFAFTHSTNRMWRKTRSHTAGSLCIGVDPNRNWDAGFGLS 153
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ + A S+H L+ Y YG
Sbjct: 154 GASSNPCSETYHGKFANSEVEVKSIVDFVKDHGNIKAFISIHSYSQLLM-YPYGYKTEPV 212
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD + L+ + ++ T+F G I A Y G DW Y G + T E+
Sbjct: 213 PDQDELDQLSKAAVTALASL-YGTKFNYGSIIKAI-YQASGSTIDWTYSQGIKYSFTFEL 270
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 271 RDTGRYGFLLPASQIIPTAKE 291
>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
Length = 309
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 42/261 (16%)
Query: 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDS 63
IG + G P++V++ S PA +H E V + + A I ++ +D+
Sbjct: 38 IGNTYEGRPIYVLKFSTGG---SKRPAIWIDTGIHSREWVTQASGVWFAKKITQDYGQDA 94
Query: 64 LARLIVENMHLHILPSMNPDGYALKRRGNAN--------------NIDLNRDFPDQFFPM 109
I++ + + + NPDG+A N +D NR++ F
Sbjct: 95 AFTAILDTLDIFLEIVTNPDGFAFTHSTNRMWRKTRSHTAGSLCIGVDPNRNWDAGFGLS 154
Query: 110 NNDEEAC-----------QPETRAIMSWVR-QIHFTASASLHGVISLIQRYYYG-----C 152
C + E ++I+ +V+ + A S+H L+ Y YG
Sbjct: 155 GASSNPCSETYHGKFANSEVEVKSIVDFVKDHGNIKAFISIHSYSQLLM-YPYGYKTEPV 213
Query: 153 PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212
PD + L+ + ++ T+F G I A Y G DW Y G + T E+
Sbjct: 214 PDQDELDQLSKAAVTALASL-YGTKFNYGSIIKAI-YQASGSTIDWTYSQGIKYSFTFEL 271
Query: 213 SDDK-----WPSAEELPTIWE 228
D P+++ +PT E
Sbjct: 272 RDTGRYGFLLPASQIIPTAKE 292
>pdb|1NSA|A Chain A, Three-Dimensional Structure Of Porcine Procarboxypeptidase
B: A Structural Basis Of Its Inactivity
Length = 395
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 52/251 (20%)
Query: 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
+IG + G ++++++ KPG +P A H E + + + +
Sbjct: 123 AIGTTFDGDNIYLLKVG-KPGSNKP--AIFMDCGFHAREWISQAFCQWFVRDAVRTYGYE 179
Query: 63 SLARLIVENMHLHILPSMNPDGY-------ALKRRGNANN-------IDLNRDFPDQFFP 108
+ ++N+ ++LP +N DGY + R+ + N D NR+F +
Sbjct: 180 AHMTEFLDNLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGSSCTGTDPNRNFNAGWCT 239
Query: 109 MNNDEEAC-----------QPETRAIMSWVRQ--IHFTASASLHGVISLI---QRYYYGC 152
+ C + ET+A+ ++R A ++H +I Y Y
Sbjct: 240 VGASVNPCNETYCGSAAESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPYSYDYKL 299
Query: 153 PDDEA---------FQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYG 203
P+++A + LAS+Y S+ ST YP GG DW Y G
Sbjct: 300 PENDAELNSLAKGAVKELASLYGTSYSYGPGSTTI----------YPAAGGSDDWAYNQG 349
Query: 204 GCFELTLEISD 214
+ T E+ D
Sbjct: 350 IKYSFTFELRD 360
>pdb|1Z5R|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1Z5R|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
pdb|1ZG7|A Chain A, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|B Chain B, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG7|C Chain C, Crystal Structure Of 2-(5-{[amino(Imino)methyl]amino}-2-
Chlorophenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|A Chain A, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|B Chain B, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG8|C Chain C, Crystal Structure Of (R)-2-(3-{[amino(Imino)
Methyl]amino}phenyl)-3-Sulfanylpropanoic Acid Bound To
Activated Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|A Chain A, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|B Chain B, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|1ZG9|C Chain C, Crystal Structure Of 5-{[amino(Imino)methyl]amino}-2-
(Sulfanylmethyl)pentanoic Acid Bound To Activated
Porcine Pancreatic Carboxypeptidase B
pdb|2JEW|A Chain A, Crystal Structure Of ( (2s)-5-Amino-2-((1-N-Propyl-1h-
Imidazol-4-Yl)methyl)pentanoic Acid) Uk396,082 A Tafia
Inhibitor, Bound To Activated Porcine Pancreatic
Carboxypeptidaseb
pdb|2PIY|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIY|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
(S)-2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(3-Phenyl-Propane-1-Sulfonylamino)-
Propyl]- Phosphinoyl}-Propionic Acid {zk 528} Complex
pdb|2PIZ|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PIZ|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Guanidino-Phenyl)-3-[hydroxy-(3-
Phenyl-Propyl)-Phosphinoyl]-Propionic Acid Complex
pdb|2PJ0|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ0|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-2-Methyl-
Propyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ1|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ1|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-aminomethyl-phenyl)-[((r)-1-
Benzyloxycarbonylamino-2-methyl-propyl)-hydroxy-
Phosphinoyloxy]-acetic Acid Complex
pdb|2PJ2|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ2|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzyloxycarbonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]-Propionic Acid Complex
pdb|2PJ3|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ3|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B (3-Guanidino-Phenyl)-{hydroxy-[(R)-2-
Methyl-1-(3-Phenyl-Propionylamino)-Propyl]-
Phosphinoyloxy}- Acetic Acid Complex
pdb|2PJ4|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ4|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-Benzyloxycarbonylamino-Cyclohexyl-
Methyl)-Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-
Acetic Acid Complex
pdb|2PJ5|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ5|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
[((R)-1-Benzyloxycarbonylamino-Hexyl)-
Hydroxy-Phosphinoyloxy]-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJ6|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{hydroxy-
[(R)-2-Methyl-1-(2-Phenyl-Ethanesulfonylamino)-Propyl]-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ7|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ7|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-[((R)-1-
Benzenesulfonylamino-2-Methyl-Propyl)-Hydroxy-
Phosphinoyl]- Propionic Acid Complex
pdb|2PJ8|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ8|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Biphenyl-4-Sulfonylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-Propionic Acid Complex
pdb|2PJ9|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B 2-(3-Aminomethyl-Phenyl)-3-{[(R)-1-
(Benzo[1,2,
5]thiadiazole-4-Sulfonylamino)-2-Methyl-Propyl]-
Hydroxy-Phosphinoyl}-Propionic Acid Complex
pdb|2PJA|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJA|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-
3-Phenyl-Propionylamino)-2-Methyl-Propyl]-Hydroxy-
Phosphinoyl}-2-(3-Guanidino-Phenyl)-Propionic Acid
Complex
pdb|2PJB|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJB|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
2-(3-aminomethyl-phenyl)-3-{[1-((s)-2-
Benzyloxycarbonylamino-3-phenyl-propane-1-
sulfonylamino)-2-
Methyl-propyl]-hydroxy-phosphinoyl}-propionic Acid
Complex
pdb|2PJC|A Chain A, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|B Chain B, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
pdb|2PJC|C Chain C, Crystal Structure Of Activated Porcine Pancreatic
Carboxypeptidase B
({(R)-1-[(S)-2-Benzyloxycarbonylamino-3-
(4-Hydroxy-Phenyl)-Propionylamino]-2-Methyl-Propyl}-
Hydroxy-Phosphinoyloxy)-(3-Guanidino-Phenyl)-Acetic Acid
Complex
Length = 306
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 36/243 (14%)
Query: 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
+IG + G ++++++ KPG +P A H E + + +
Sbjct: 34 AIGTTFLGNNIYLLKVG-KPGPNKP--AIFMDCGFHAREWISHAFCQWFVREAVLTYGYE 90
Query: 63 SLARLIVENMHLHILPSMNPDGY-------ALKRRGNANN-------IDLNRDFPDQFFP 108
S + + ++LP +N DGY + R+ + N D NR+F +
Sbjct: 91 SHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCT 150
Query: 109 MNNDEEAC-----------QPETRAIMSWVRQ--IHFTASASLHGVISLI---QRYYYGC 152
+ C + ET+A+ ++R A ++H +I Y Y
Sbjct: 151 TGASTDPCDETYCGSAAESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPYSYDYKL 210
Query: 153 PDDEA-FQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
P++ A LA + + T++ G + YP GG DW Y G + T E
Sbjct: 211 PENNAELNNLAKAAVKELATL-YGTKYTYGP-GATTIYPAAGGSDDWAYDQGIKYSFTFE 268
Query: 212 ISD 214
+ D
Sbjct: 269 LRD 271
>pdb|1CPB|B Chain B, Structure Of Carboxypeptidase B At 2.8 Angstroms
Resolution
Length = 217
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 49/186 (26%)
Query: 68 IVENMHLHILPSMNPDGY--------------ALKRRGNANNIDLNRDFPDQFFPMNNDE 113
++ + ++LP +N DGY + + + DLNR+F + +
Sbjct: 7 FLDKLDFYVLPVVNIDGYIYTWTTNRMWRKTRSTRAGSSCTGTDLNRNFDAGWCSIGASN 66
Query: 114 EAC-----------QPETRAIMSWVRQIHFTASASLHGVISLIQRYYYGCPDDEAFQFLA 162
C + E++A+ ++R H ++ + + S Q Y D
Sbjct: 67 NPCSETYCGSAAESEKESKAVADFIRN-HLSSIKAYLTIHSYSQMMLYPYSYD------- 118
Query: 163 SVYSRSHYNMSLSTEFQGGI-----INGASW---------YPIYGGMQDWNYIYGGCFEL 208
Y N+ L+T +G + ++G ++ YP GG DW Y G +
Sbjct: 119 --YKLPKNNVELNTLAKGAVKKLASLHGTTYSYGPGATTIYPASGGSDDWAYDQGIKYSF 176
Query: 209 TLEISD 214
T E+ D
Sbjct: 177 TFELRD 182
>pdb|3GLJ|A Chain A, A Polymorph Of Carboxypeptidase B Zymogen Structure
Length = 401
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 36/243 (14%)
Query: 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD 62
+IG + G ++++++ KPG +P A H E + + +
Sbjct: 129 AIGTTFLGNNIYLLKVG-KPGPNKP--AIFMDCGFHAREWISHAFCQWFVREAVLTYGYE 185
Query: 63 SLARLIVENMHLHILPSMNPDGY-------ALKRRGNANN-------IDLNRDFPDQFFP 108
S + + ++LP +N DGY + R+ + N D NR+F +
Sbjct: 186 SHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCT 245
Query: 109 MNNDEEAC-----------QPETRAIMSWVRQ--IHFTASASLHGVISLI---QRYYYGC 152
+ C + ET+A+ ++R A ++H +I Y Y
Sbjct: 246 TGASTDPCDETYCGSAAESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPYSYDYKL 305
Query: 153 PDDEA-FQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211
P++ A LA + + T++ G + YP GG DW Y G + T E
Sbjct: 306 PENNAELNNLAKAAVKELATL-YGTKYTYGP-GATTIYPAAGGSDDWAYDQGIKYSFTFE 363
Query: 212 ISD 214
+ D
Sbjct: 364 LRD 366
>pdb|2C1C|A Chain A, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
pdb|2C1C|B Chain B, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
Length = 312
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 5 GKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSL 64
+S G P+ I+IS +E +P G +H E + + W V+D
Sbjct: 33 AESFEGRPIKYIKISTTNFEDENKPVIFIDGGIHAREWISPPSV----TWAIHKLVEDVT 88
Query: 65 ARLIVENMHLHILPSMNPDGYAL---------KRRGNANN--------IDLNRDF 102
++E +LP +NPDGY K R NN D NR+F
Sbjct: 89 ENDLLEKFDWILLPVVNPDGYKYTFTNERFWRKTRSTNNNPLSQICRGADGNRNF 143
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 51 LANWICDNHVK------DSLARLIVENMHLHILPSMNPDG-YALKRRGNANNIDLNR 100
+A W + ++ D+ + ++E L+++P+MNPDG + R NA DLNR
Sbjct: 185 MAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGAFHGNLRTNAAGQDLNR 241
>pdb|2QVP|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|C Chain C, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
Length = 275
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 12 PLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVEN 71
PL++++ PG + P HG+E G L+ H L + +
Sbjct: 52 PLYLLQ---SPGQKAGLPNLLISAGFHGEESAGPWGLL---------HFLSQLDGELFKR 99
Query: 72 MHLHILPSMNPDGYALKRRGNANNIDLNRDF 102
++L +LP +NP G+A R N + NR F
Sbjct: 100 VNLSVLPLVNPTGFAKGHRFNELGENPNRGF 130
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 23/115 (20%)
Query: 1 MFSIGKSVSGFP--LWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDN 58
+ +G++V G P L V+ D+ G + + I H E A W +
Sbjct: 153 VVELGRTVEGRPXSLVVLGTPDEAGAAKKK--VWIIARQHPGESX--------AEWFIEG 202
Query: 59 HVK----------DSLARLIVENMHLHILPSMNPDGYALKR-RGNANNIDLNRDF 102
VK D +AR + ++ +I+P+ NPDG R NA +LNR++
Sbjct: 203 LVKRLVGWGDWSGDPVARKLYDHATFYIVPNXNPDGSVHGNLRTNAAGANLNREW 257
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 14 WVIEISDKPGVEEPEPAFKFIGNVHGDEPVGR-ELLILLANWICDNHVKDSLARLIVENM 72
+ + + P + P+ HG+E G LL L+ D + E +
Sbjct: 52 YKVSLYQSPAAKSGLPSLLISAGFHGEESAGPWGLLHFLSEASAD----------LFERV 101
Query: 73 HLHILPSMNPDGYALKRRGNANNIDLNRDF 102
+L +LP +NP G++ R N + NR F
Sbjct: 102 NLSLLPLVNPTGFSRGHRFNKYGENPNRGF 131
>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
pdb|3L2N|B Chain B, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
Length = 395
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 24 VEEPEPAFKFI---GNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80
V + +P+ K I H E L+ L N + DN S A +++ + +I+P+
Sbjct: 168 VGDDDPSKKSIWITARQHPGETXAEWLVEGLLNQLLDNDCPTSKA--LLDKANFYIVPNX 225
Query: 81 NPDGYALKR-RGNANNIDLNRDF--------PDQFFPMNNDEE 114
NPDG R NA +LNR++ P+ ++ +N E
Sbjct: 226 NPDGSVRGHLRTNAVGANLNREWQTPSLERSPEVYYVVNKXHE 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,706,826
Number of Sequences: 62578
Number of extensions: 546943
Number of successful extensions: 1266
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 42
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)