Query 037202
Match_columns 393
No_of_seqs 358 out of 1901
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03869 M14_CPX_like Peptidase 100.0 1.5E-85 3.3E-90 649.2 32.6 315 1-319 28-405 (405)
2 KOG2649 Zinc carboxypeptidase 100.0 1.5E-84 3.2E-89 634.2 29.5 321 1-325 92-459 (500)
3 cd03863 M14_CPD_II The second 100.0 3.2E-83 6.9E-88 632.1 34.0 315 1-321 29-375 (375)
4 cd03865 M14_CPE_H Peptidase M1 100.0 6.6E-83 1.4E-87 630.7 33.3 316 1-320 28-402 (402)
5 cd03864 M14_CPN Peptidase M14 100.0 1E-82 2.2E-87 631.2 34.6 316 1-320 24-392 (392)
6 cd06245 M14_CPD_III The third 100.0 2.7E-80 5.8E-85 610.0 34.6 312 1-320 25-362 (363)
7 cd03866 M14_CPM Peptidase M14 100.0 3.3E-77 7.1E-82 591.2 33.9 312 1-319 28-376 (376)
8 cd03868 M14_CPD_I The first ca 100.0 9.4E-75 2E-79 575.8 34.0 315 1-319 24-372 (372)
9 cd03867 M14_CPZ Peptidase M14- 100.0 1.4E-74 3.1E-79 576.7 33.9 315 1-319 24-395 (395)
10 cd03858 M14_CP_N-E_like Carbox 100.0 1.1E-68 2.5E-73 533.6 34.0 315 1-319 24-374 (374)
11 cd03870 M14_CPA Peptidase M14 100.0 4E-52 8.8E-57 400.7 23.4 235 1-240 29-297 (301)
12 cd03871 M14_CPB Peptidase M14 100.0 2.4E-52 5.2E-57 401.8 21.5 235 1-240 29-298 (300)
13 cd06246 M14_CPB2 Peptidase M14 100.0 3.2E-52 7E-57 401.5 22.4 236 1-240 28-298 (300)
14 cd06248 M14_CPA_CPB_like Pepti 100.0 5.8E-52 1.2E-56 401.3 22.0 237 1-239 27-302 (304)
15 cd06247 M14_CPO Peptidase M14 100.0 9.8E-52 2.1E-56 396.8 22.6 235 1-239 27-296 (298)
16 cd06226 M14_CPT_like Peptidase 100.0 2.2E-51 4.9E-56 393.5 22.7 227 1-236 7-291 (293)
17 cd03859 M14_CPT Peptidase M14- 100.0 1.9E-51 4.1E-56 397.0 21.2 225 1-234 27-295 (295)
18 cd03872 M14_CPA6 Carboxypeptid 100.0 7E-51 1.5E-55 390.9 22.1 237 1-241 25-296 (300)
19 KOG2650 Zinc carboxypeptidase 100.0 6.6E-51 1.4E-55 402.0 21.1 235 1-239 144-416 (418)
20 cd03860 M14_CP_A-B_like The Pe 100.0 1.5E-47 3.1E-52 370.0 22.9 233 1-239 24-292 (294)
21 cd06228 Peptidase_M14-like_3 A 100.0 6.3E-47 1.4E-51 365.5 20.9 225 4-234 6-331 (332)
22 cd06227 Peptidase_M14-like_2 A 100.0 2.7E-46 5.8E-51 355.1 21.5 210 1-215 25-259 (272)
23 PF00246 Peptidase_M14: Zinc c 100.0 9.6E-47 2.1E-51 362.1 18.3 232 1-233 18-279 (279)
24 cd06229 M14_Endopeptidase_I Pe 100.0 2E-45 4.4E-50 348.1 19.2 209 7-232 1-253 (255)
25 smart00631 Zn_pept Zn_pept. 100.0 1.8E-44 3.9E-49 345.8 19.4 216 1-224 24-274 (277)
26 cd06905 Peptidase_M14-like_8 A 100.0 7.7E-44 1.7E-48 349.5 21.9 219 1-224 27-352 (360)
27 cd06237 M14_Nna1_like_3 A bact 100.0 5.4E-40 1.2E-44 307.6 18.2 191 1-216 28-227 (244)
28 cd03862 Peptidase_M14-like_7 A 100.0 6.2E-38 1.3E-42 297.6 20.7 199 9-216 8-242 (273)
29 cd06234 M14_Nna1_like_1 A bact 100.0 1.3E-37 2.9E-42 293.5 18.9 201 1-216 31-239 (263)
30 cd03856 M14_Nna1_like Peptidas 100.0 4.8E-37 1E-41 291.8 16.1 201 1-217 30-243 (269)
31 PRK10602 murein peptide amidas 100.0 1.2E-36 2.7E-41 282.3 15.9 195 2-239 18-232 (237)
32 cd00596 Peptidase_M14_like The 100.0 1.7E-35 3.8E-40 269.6 18.4 190 31-233 1-195 (196)
33 cd06908 M14_AGBL4_like Peptida 100.0 2.4E-34 5.3E-39 270.8 20.4 201 1-218 14-231 (261)
34 cd06235 M14_Nna1_like_2 Subgro 100.0 5.3E-33 1.1E-37 263.0 20.1 199 1-216 15-229 (258)
35 cd06238 Peptidase_M14-like_1_1 100.0 9.5E-33 2.1E-37 261.8 17.2 194 4-215 1-255 (271)
36 cd06243 Peptidase_M14-like_1_6 100.0 2.3E-31 5.1E-36 247.5 20.2 126 4-141 1-130 (236)
37 cd06239 Peptidase_M14-like_1_2 100.0 1.2E-31 2.6E-36 248.5 17.9 128 1-146 12-139 (231)
38 cd06244 Peptidase_M14-like_1_7 100.0 2.3E-31 5E-36 249.4 19.3 198 4-215 1-254 (268)
39 cd06242 Peptidase_M14-like_1_5 100.0 1.9E-30 4.1E-35 246.5 19.3 130 1-144 25-156 (268)
40 cd06904 M14_MpaA_like Peptidas 100.0 4.9E-31 1.1E-35 236.7 13.5 156 31-216 1-164 (178)
41 cd03857 Peptidase_M14-like_1 P 100.0 4.9E-30 1.1E-34 238.7 20.0 125 4-141 1-131 (226)
42 cd06236 M14_AGBL5_like Peptida 100.0 8E-30 1.7E-34 243.6 20.5 134 2-144 19-179 (304)
43 cd06907 M14_AGBL2-3_like Pepti 100.0 1.6E-29 3.5E-34 236.7 20.8 199 1-216 16-230 (261)
44 cd06241 Peptidase_M14-like_1_4 100.0 2.8E-29 6E-34 238.3 14.1 128 1-143 15-163 (266)
45 cd06240 Peptidase_M14-like_1_3 100.0 2.2E-28 4.7E-33 231.5 18.6 200 1-218 2-261 (273)
46 cd06906 M14_Nna1 Peptidase M14 99.9 1E-24 2.2E-29 205.2 19.0 133 2-144 18-164 (278)
47 cd06231 Peptidase_M14-like_4 A 99.9 4.1E-25 9E-30 206.0 13.3 121 2-143 18-141 (236)
48 cd06232 Peptidase_M14-like_5 P 99.9 4.8E-23 1E-27 187.5 11.3 108 5-141 21-143 (240)
49 cd06250 M14_PaAOTO_like An unc 99.8 9.6E-20 2.1E-24 180.3 17.7 253 3-288 4-307 (359)
50 cd06251 M14_ASTE_ASPA_like_1 A 99.8 5.5E-19 1.2E-23 170.3 16.5 225 12-288 8-237 (287)
51 cd06253 M14_ASTE_ASPA_like_3 A 99.8 1.1E-18 2.5E-23 168.7 17.2 234 11-288 8-247 (298)
52 TIGR02994 ectoine_eutE ectoine 99.8 2.9E-18 6.2E-23 167.4 17.9 226 12-288 36-273 (325)
53 cd06254 M14_ASTE_ASPA_like_4 A 99.8 4E-18 8.6E-23 164.4 17.5 230 11-288 4-241 (288)
54 cd06252 M14_ASTE_ASPA_like_2 A 99.8 7.3E-18 1.6E-22 164.6 19.0 230 10-288 21-262 (316)
55 cd06255 M14_ASTE_ASPA_like_5 A 99.8 9.1E-18 2E-22 162.2 17.8 240 4-288 2-249 (293)
56 cd06233 Peptidase_M14-like_6 P 99.8 6.5E-18 1.4E-22 160.5 14.0 170 9-201 36-271 (283)
57 PF10994 DUF2817: Protein of u 99.7 4E-17 8.6E-22 159.3 15.5 204 5-231 32-303 (341)
58 COG3608 Predicted deacylase [G 99.7 3.7E-16 8.1E-21 149.9 17.3 197 14-252 39-240 (331)
59 PF04952 AstE_AspA: Succinylgl 99.7 6.4E-17 1.4E-21 156.3 11.3 185 28-240 2-194 (292)
60 cd06230 M14_ASTE_ASPA_like The 99.7 7.6E-16 1.6E-20 145.9 13.9 117 31-166 1-120 (252)
61 PRK02259 aspartoacylase; Provi 99.5 1.3E-13 2.9E-18 132.9 13.9 100 29-143 3-108 (288)
62 cd06909 M14_ASPA Aspartoacylas 99.5 2.1E-13 4.7E-18 130.6 14.4 99 29-142 1-105 (282)
63 cd06256 M14_ASTE_ASPA_like_6 A 99.5 2.9E-13 6.3E-18 132.2 14.0 152 29-216 35-187 (327)
64 cd06910 M14_ASTE_ASPA_like_7 A 99.5 5.6E-13 1.2E-17 127.6 12.5 119 29-165 1-126 (272)
65 PRK05324 succinylglutamate des 99.4 2.9E-12 6.3E-17 125.6 15.8 100 26-141 45-153 (329)
66 COG2866 Predicted carboxypepti 99.4 3.1E-13 6.7E-18 134.1 8.0 111 2-129 124-237 (374)
67 cd03855 M14_ASTE Peptidase M14 99.4 9.7E-12 2.1E-16 121.7 17.3 100 26-141 40-149 (322)
68 TIGR03242 arg_catab_astE succi 99.4 5.6E-12 1.2E-16 123.2 15.2 100 26-141 39-148 (319)
69 KOG3641 Zinc carboxypeptidase 99.4 3.7E-12 7.9E-17 127.6 13.3 130 3-144 406-542 (650)
70 PF13715 DUF4480: Domain of un 99.3 1.2E-11 2.5E-16 97.9 10.5 84 246-331 2-88 (88)
71 COG2988 Succinylglutamate desu 99.0 3.1E-09 6.8E-14 99.3 13.2 185 30-239 45-236 (324)
72 PF13620 CarboxypepD_reg: Carb 99.0 2.2E-09 4.7E-14 83.5 8.3 72 246-320 2-82 (82)
73 PF08308 PEGA: PEGA domain; I 97.2 0.0021 4.6E-08 48.4 7.4 61 256-322 8-70 (71)
74 PF09892 DUF2119: Uncharacteri 97.1 0.001 2.2E-08 59.1 6.0 81 29-142 7-87 (193)
75 PF08400 phage_tail_N: Prophag 97.0 0.0025 5.5E-08 54.0 7.4 64 245-311 4-79 (134)
76 PRK15036 hydroxyisourate hydro 96.4 0.023 4.9E-07 48.8 8.8 72 244-320 27-114 (137)
77 COG4073 Uncharacterized protei 96.2 0.0076 1.7E-07 52.4 4.7 77 32-142 18-94 (198)
78 cd00421 intradiol_dioxygenase 95.6 0.043 9.4E-07 47.6 7.2 65 244-311 12-107 (146)
79 PF12866 DUF3823: Protein of u 95.4 0.056 1.2E-06 50.2 7.5 79 243-323 21-115 (222)
80 PF12985 DUF3869: Domain of un 95.0 0.049 1.1E-06 44.0 4.9 69 243-324 21-98 (104)
81 cd03458 Catechol_intradiol_dio 94.6 0.12 2.7E-06 48.8 7.5 65 244-311 105-214 (256)
82 cd03462 1,2-CCD chlorocatechol 94.1 0.18 3.9E-06 47.5 7.4 66 243-311 99-209 (247)
83 TIGR02465 chlorocat_1_2 chloro 94.0 0.19 4.2E-06 47.3 7.3 64 244-310 99-207 (246)
84 TIGR02439 catechol_proteo cate 93.9 0.2 4.4E-06 48.1 7.3 65 244-311 129-238 (285)
85 cd03460 1,2-CTD Catechol 1,2 d 93.5 0.25 5.4E-06 47.4 7.3 65 244-311 125-234 (282)
86 PF00775 Dioxygenase_C: Dioxyg 93.5 0.37 8E-06 43.4 8.0 47 244-293 30-98 (183)
87 cd03459 3,4-PCD Protocatechuat 92.9 0.38 8.2E-06 42.3 6.9 64 244-310 16-117 (158)
88 cd03461 1,2-HQD Hydroxyquinol 92.8 0.32 6.9E-06 46.7 6.9 66 243-311 120-230 (277)
89 TIGR02423 protocat_alph protoc 92.4 0.5 1.1E-05 43.0 7.3 46 244-292 40-110 (193)
90 PF07210 DUF1416: Protein of u 92.3 1.2 2.7E-05 34.4 8.1 53 244-300 8-65 (85)
91 TIGR02438 catachol_actin catec 91.7 0.64 1.4E-05 44.6 7.4 66 243-311 132-242 (281)
92 cd03463 3,4-PCD_alpha Protocat 91.2 0.62 1.3E-05 42.1 6.5 46 244-292 37-106 (185)
93 cd03464 3,4-PCD_beta Protocate 90.7 1.1 2.3E-05 41.7 7.6 45 244-291 66-135 (220)
94 TIGR02422 protocat_beta protoc 90.4 1 2.2E-05 41.8 7.2 45 244-291 61-130 (220)
95 PF14686 fn3_3: Polysaccharide 90.0 2.9 6.3E-05 33.4 8.7 65 244-311 3-86 (95)
96 PF02369 Big_1: Bacterial Ig-l 87.0 3.3 7.1E-05 33.3 7.3 62 245-309 26-100 (100)
97 KOG1948 Metalloproteinase-rela 86.4 2 4.4E-05 46.7 7.1 64 244-310 316-382 (1165)
98 smart00634 BID_1 Bacterial Ig- 85.1 4.3 9.4E-05 31.9 7.0 58 245-305 21-90 (92)
99 COG3485 PcaH Protocatechuate 3 84.3 1.5 3.2E-05 40.8 4.5 65 243-310 72-160 (226)
100 PF06488 L_lac_phage_MSP: Lact 81.3 2.7 5.9E-05 38.2 4.8 33 277-310 264-298 (301)
101 PF05738 Cna_B: Cna protein B- 80.9 7.1 0.00015 28.6 6.4 38 272-311 21-63 (70)
102 PF09430 DUF2012: Protein of u 79.3 5.2 0.00011 33.4 5.7 48 261-310 10-61 (123)
103 PF07495 Y_Y_Y: Y_Y_Y domain; 79.2 6.2 0.00013 28.5 5.5 32 265-297 14-47 (66)
104 TIGR02962 hdxy_isourate hydrox 76.1 9.7 0.00021 31.4 6.2 70 246-320 3-89 (112)
105 PF01102 Glycophorin_A: Glycop 74.0 3.5 7.5E-05 34.6 3.1 26 353-378 69-94 (122)
106 KOG1948 Metalloproteinase-rela 72.6 6.3 0.00014 43.1 5.3 59 243-303 118-180 (1165)
107 PF11669 WBP-1: WW domain-bind 66.9 6.7 0.00014 31.8 3.3 34 354-387 23-57 (102)
108 PF10670 DUF4198: Domain of un 66.5 16 0.00034 33.0 6.2 50 244-297 151-211 (215)
109 PF14991 MLANA: Protein melan- 66.0 2 4.3E-05 35.2 0.0 23 361-383 36-58 (118)
110 PF14054 DUF4249: Domain of un 62.7 47 0.001 31.6 8.9 54 258-311 59-122 (298)
111 PF11008 DUF2846: Protein of u 61.3 62 0.0013 26.5 8.2 51 258-311 40-93 (117)
112 PF15183 MRAP: Melanocortin-2 60.5 14 0.0003 28.6 3.7 26 354-379 41-66 (90)
113 COG5266 CbiK ABC-type Co2+ tra 55.3 41 0.00089 31.8 6.6 50 244-297 172-240 (264)
114 PF10577 UPF0560: Uncharacteri 52.6 53 0.0011 36.1 7.8 101 246-348 3-115 (807)
115 TIGR03000 plancto_dom_1 Planct 48.0 81 0.0018 24.1 6.0 51 258-311 10-67 (75)
116 COG1470 Predicted membrane pro 47.7 69 0.0015 33.0 7.3 61 246-311 189-251 (513)
117 PF15468 DUF4636: Domain of un 47.3 32 0.00068 31.6 4.4 35 330-370 23-57 (243)
118 cd05822 TLP_HIUase HIUase (5-h 47.1 67 0.0014 26.5 6.0 71 246-321 3-90 (112)
119 PF07550 DUF1533: Protein of u 41.3 25 0.00054 25.8 2.4 20 286-306 45-64 (65)
120 PF12273 RCR: Chitin synthesis 41.3 25 0.00055 29.5 2.8 8 373-380 24-31 (130)
121 PHA03265 envelope glycoprotein 40.9 21 0.00046 35.2 2.5 50 334-387 338-387 (402)
122 PF00576 Transthyretin: HIUase 40.9 36 0.00079 28.0 3.6 55 246-302 3-72 (112)
123 PF07523 Big_3: Bacterial Ig-l 40.9 43 0.00094 24.4 3.7 21 286-308 46-66 (67)
124 PF14344 DUF4397: Domain of un 40.8 2E+02 0.0042 23.3 8.9 77 261-340 16-101 (122)
125 PF14347 DUF4399: Domain of un 40.3 99 0.0021 24.2 5.8 52 243-298 19-71 (87)
126 COG1862 YajC Preprotein transl 39.6 18 0.00038 29.1 1.5 31 353-383 7-37 (97)
127 PF03785 Peptidase_C25_C: Pept 39.6 1.6E+02 0.0035 22.8 6.6 47 261-309 30-81 (81)
128 cd03457 intradiol_dioxygenase_ 37.0 33 0.00072 31.0 3.0 24 243-266 26-50 (188)
129 cd05821 TLP_Transthyretin Tran 36.6 1E+02 0.0023 25.7 5.7 71 245-320 8-95 (121)
130 cd05469 Transthyretin_like Tra 36.0 1.2E+02 0.0027 25.0 6.0 71 246-321 3-90 (113)
131 PF12297 EVC2_like: Ellis van 35.7 39 0.00085 34.2 3.5 35 344-378 59-93 (429)
132 COG1470 Predicted membrane pro 35.6 3.2E+02 0.0068 28.4 9.8 66 244-322 399-470 (513)
133 PRK05886 yajC preprotein trans 35.3 23 0.00049 29.1 1.5 24 360-383 9-32 (109)
134 KOG3641 Zinc carboxypeptidase 35.0 25 0.00054 36.9 2.1 38 62-102 153-190 (650)
135 smart00557 IG_FLMN Filamin-typ 34.8 1E+02 0.0022 24.0 5.2 26 274-300 51-79 (93)
136 TIGR02017 hutG_amidohyd N-form 31.0 3.1E+02 0.0067 26.1 8.7 80 128-220 136-231 (263)
137 PF14147 Spore_YhaL: Sporulati 30.5 58 0.0013 22.9 2.7 19 355-373 3-21 (52)
138 TIGR02867 spore_II_P stage II 29.7 3.2E+02 0.0069 24.9 8.1 88 120-216 70-174 (196)
139 PF06365 CD34_antigen: CD34/Po 28.9 87 0.0019 28.7 4.3 34 343-379 99-132 (202)
140 TIGR01167 LPXTG_anchor LPXTG-m 28.7 57 0.0012 20.2 2.3 20 356-375 13-32 (34)
141 TIGR03778 VPDSG_CTERM VPDSG-CT 28.6 70 0.0015 19.2 2.4 18 359-376 8-25 (26)
142 PF11974 MG1: Alpha-2-macroglo 28.5 2.5E+02 0.0054 22.2 6.5 50 245-296 14-69 (97)
143 PF05366 Sarcolipin: Sarcolipi 28.1 80 0.0017 19.2 2.6 21 355-375 8-28 (31)
144 smart00095 TR_THY Transthyreti 28.0 1.9E+02 0.0041 24.2 5.9 71 245-320 5-92 (121)
145 COG3741 HutG N-formylglutamate 27.6 2.5E+02 0.0054 26.8 7.2 76 131-218 145-234 (272)
146 PF01299 Lamp: Lysosome-associ 27.3 89 0.0019 30.3 4.5 53 316-375 245-297 (306)
147 PF11395 DUF2873: Protein of u 26.5 1.3E+02 0.0028 19.7 3.5 27 346-372 6-32 (43)
148 PF13953 PapC_C: PapC C-termin 26.2 1.9E+02 0.0041 21.1 5.1 46 250-299 3-51 (68)
149 TIGR00739 yajC preprotein tran 25.1 34 0.00073 26.7 0.8 23 359-381 7-29 (84)
150 PF02960 K1: K1 glycoprotein; 23.7 98 0.0021 25.4 3.2 23 284-307 18-41 (130)
151 TIGR03063 srtB_target sortase 23.0 1.1E+02 0.0023 19.0 2.5 11 354-364 9-19 (29)
152 PF15050 SCIMP: SCIMP protein 22.9 96 0.0021 25.8 3.1 27 350-376 3-35 (133)
153 cd06478 ACD_HspB4-5-6 Alpha-cr 22.9 1E+02 0.0022 23.6 3.2 22 290-311 8-29 (83)
154 PF05393 Hum_adeno_E3A: Human 22.0 1.6E+02 0.0034 23.2 3.9 7 354-360 37-43 (94)
155 PF13115 YtkA: YtkA-like 21.9 3.1E+02 0.0067 20.6 5.8 16 254-269 30-46 (86)
156 cd06477 ACD_HspB3_Like Alpha c 21.8 1E+02 0.0022 23.9 2.9 23 289-311 7-29 (83)
157 PF11057 Cortexin: Cortexin of 21.7 92 0.002 23.7 2.5 28 360-387 33-60 (81)
158 PF05545 FixQ: Cbb3-type cytoc 21.6 96 0.0021 21.2 2.5 35 352-387 11-45 (49)
159 cd06481 ACD_HspB9_like Alpha c 21.5 1E+02 0.0022 23.9 3.0 23 289-311 7-29 (87)
160 cd06479 ACD_HspB7_like Alpha c 21.3 98 0.0021 23.8 2.8 23 289-311 8-30 (81)
161 PF02699 YajC: Preprotein tran 21.2 76 0.0017 24.5 2.1 25 357-381 4-28 (82)
162 PF03908 Sec20: Sec20; InterP 20.6 1E+02 0.0023 24.1 2.9 20 356-375 72-91 (92)
No 1
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=1.5e-85 Score=649.18 Aligned_cols=315 Identities=37% Similarity=0.734 Sum_probs=288.4
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhcc-CChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHV-KDSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~-~d~~~~~ll~~~~i~ivP 78 (393)
|++||+|+|||+|++++||++++.++ .||.|+++||||||||+|++++++|+++||++|. .|+.+++||++++|+|+|
T Consensus 28 l~sIGkS~EGR~L~~l~Is~~~~~~~~~kP~v~~~g~iHgrE~ig~~~~l~li~~L~~~y~~~d~~v~~Ll~~~~i~IvP 107 (405)
T cd03869 28 IYNIGKSYQGLKLYAMEISDNPGEHELGEPEFRYVAGMHGNEVLGRELLLLLMQFLCQEYLAGNPRVVHLVEETRIHLLP 107 (405)
T ss_pred EEEeEECcCCceEEEEEEecCCccccCCCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHHhcCeEEEEe
Confidence 57999999999999999999877654 6999999999999999999999999999999995 699999999999999999
Q ss_pred ccCccccccc---------c---cCCCCCCCCCCCCCC----CCCCCC--------------------CCCCCChHHHHH
Q 037202 79 SMNPDGYALK---------R---RGNANNIDLNRDFPD----QFFPMN--------------------NDEEACQPETRA 122 (393)
Q Consensus 79 ~~NPDG~~~~---------~---R~N~~gvDLNRNfp~----~w~~~~--------------------~~~~~sepEt~a 122 (393)
++|||||+++ | |.||+|||||||||+ .|.... +..+++||||+|
T Consensus 108 ~~NPDG~e~s~~~~~~~~~Wrk~R~na~GVDLNRNFp~~~~~~W~~~~~~~~~~~~~~~~~Pc~~~Y~G~~~~sEPET~A 187 (405)
T cd03869 108 SMNPDGYEKAYEAGSELGGWALGRWTEEGIDINHNFPDLNTILWEAEDKKKVPRKVPNHHIPIPEWYLSENATVAPETRA 187 (405)
T ss_pred eeCCchhhhhhhcCccccccccCccCCCCccccCCCcccccccccccccccccccccccCCCCccccCCCCCCCcHHHHH
Confidence 9999999874 3 678999999999996 675210 235889999999
Q ss_pred HHHHHHhcceeEEEecCCCcee--cccCC----------CCCCCHHHHHHHHHHHHHHhccccCCC---------ccccc
Q 037202 123 IMSWVRQIHFTASASLHGVISL--IQRYY----------YGCPDDEAFQFLASVYSRSHYNMSLST---------EFQGG 181 (393)
Q Consensus 123 i~~~~~~~~~~~~idlHsg~~~--~p~~y----------~~~pd~~~~~~la~~~~~~~~~m~~~~---------~y~~g 181 (393)
|++|+.+.+|++++++|+|.++ +||.+ +.+||++.|+.||+.|+.+|+.|+.+. .|..|
T Consensus 188 v~~~i~~~~FvLSanlHgG~lv~~YPyd~~~~~~~~~~~~~tpDd~~Fr~LA~~Ya~~h~~M~~~~~~~c~~~~~~~~~G 267 (405)
T cd03869 188 VIAWMEKIPFVLGANLQGGELVVSYPYDMTRTPWATQEATPTPDDAVFRWLATSYASTHLLMTDASRRVCHTEDFQKEDG 267 (405)
T ss_pred HHHHHHhCCceEEEEecCccEEEEcCcccccCCccccCCCCCCCHHHHHHHHHHHHHhCHHhhcCCCCCCCCcccccCCC
Confidence 9999999999999999999987 67754 357999999999999999999997532 34789
Q ss_pred eeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-
Q 037202 182 IINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP- 260 (393)
Q Consensus 182 ~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~- 260 (393)
|+||+.||++.|+||||+|.+.+|+++|+||+|+|||++++|+.+|++|++|||.++++ +|.||+|+|+|+ +|+||+
T Consensus 268 itNGa~Wy~~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~all~~~~~-vh~GikG~V~d~-~g~~i~~ 345 (405)
T cd03869 268 IINGASWHTVAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEWENNKESLLVFMEQ-VHRGIKGVVRDK-TGKGIPN 345 (405)
T ss_pred ceeCCeeccCCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHH-HhcCceEEEECC-CCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999986 899999999998 999999
Q ss_pred ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC---ceEEEEEE
Q 037202 261 GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE---TATADFIL 319 (393)
Q Consensus 261 a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~---~~~~~f~L 319 (393)
|+|.|.|++|.++|. .+|+|||+|.|| +|+|+|+++||.+++++|+|.. ++.+||+|
T Consensus 346 a~i~v~g~~~~v~t~-~~GdywRll~pG-~y~v~~~a~gy~~~~~~~~v~~~~~~~~~~f~l 405 (405)
T cd03869 346 AIISVEGINHDIRTA-SDGDYWRLLNPG-EYRVTAHAEGYTSSTKNCEVGYEMGPTQCNFTL 405 (405)
T ss_pred cEEEEecCccceeeC-CCCceEEecCCc-eEEEEEEecCCCcccEEEEEcCCCCceeeccCC
Confidence 999999999999886 899999999999 9999999999999999998884 77888876
No 2
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.5e-84 Score=634.20 Aligned_cols=321 Identities=51% Similarity=0.950 Sum_probs=298.2
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
|||||||+|||+||+++|++.||+++ .+|.++++|+|||+|.+|+|++++|+++||.+|.+|+++++|+++++|||+|+
T Consensus 92 lYSiGkSv~Gr~L~Vle~sd~PgeH~~gePEfKyv~nmHGnE~vGRElll~L~e~Lc~~y~~n~~i~~Lv~~trIHlmPS 171 (500)
T KOG2649|consen 92 LYSIGKSVEGRELWVIEISDRPGEHEPGEPEFKYIGNMHGNEVVGRELLLRLAEYLCDNYGKDPRITQLVNNTRIHIMPS 171 (500)
T ss_pred eeeccccccCceEEEEEcCCCCCcccCCCCcceeeeeccccccccHHHHHHHHHHHHHhcCCChHHHHHHhhceEEEecc
Confidence 69999999999999999999999988 49999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccc---------ccCCCCCCCCCCCCCCCCCCCC----------------CCCCCChHHHHHHHHHHHhcceeE
Q 037202 80 MNPDGYALK---------RRGNANNIDLNRDFPDQFFPMN----------------NDEEACQPETRAIMSWVRQIHFTA 134 (393)
Q Consensus 80 ~NPDG~~~~---------~R~N~~gvDLNRNfp~~w~~~~----------------~~~~~sepEt~ai~~~~~~~~~~~ 134 (393)
|||||||.+ +|.|++|+|||||||+++.... .+....||||+|+|+|+.+++|++
T Consensus 172 mNPDGyE~a~~~~~~~~~GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~~l~~~~~~~~~~~pEt~Avm~W~~~~pFvL 251 (500)
T KOG2649|consen 172 MNPDGYEIAKRGDRGWATGRNNANGVDLNRNFPDQFRLVYFIVTFDLLNSHLIMFNDDLNLRQPETIAVMKWLRDIPFVL 251 (500)
T ss_pred cCcchhhhhhcccccceecccCccccchhccCcccccceeeeeeecccccccccccccccccCccHHHHHHHHhhcceee
Confidence 999999987 7899999999999999865321 124478999999999999999999
Q ss_pred EEecCCCcee--ccc--------CCCCCCCHHHHHHHHHHHHHHhccccCCCcc--------ccceeccceeEecCCCcc
Q 037202 135 SASLHGVISL--IQR--------YYYGCPDDEAFQFLASVYSRSHYNMSLSTEF--------QGGIINGASWYPIYGGMQ 196 (393)
Q Consensus 135 ~idlHsg~~~--~p~--------~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y--------~~g~~~~~~~y~~~G~~~ 196 (393)
+++||+|+++ ||| .|+++||++.|+.||..|+.+|+.|+.+... .+||+||+.||+++||||
T Consensus 252 SAnLHGG~lvanYPfD~~~~~~~~~s~tpDd~~F~~La~~YA~~h~~M~~~~~~~~~~~~~~~~GItNGA~Wy~v~GgMq 331 (500)
T KOG2649|consen 252 SANLHGGALVANYPFDDTEDKRKYYSASPDDATFRFLARIYAKSHRNMSLGKRCECDGNNGSVGGITNGASWYPVYGGMQ 331 (500)
T ss_pred eccccCCceEEEccccCCcccccccCCCCCcHHHHHHHHHHHhhChhhhcCCCCcccccCCCcCceecCcceeecCCccc
Confidence 9999999987 555 2467899999999999999999999865322 258999999999999999
Q ss_pred ccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeee
Q 037202 197 DWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAG 275 (393)
Q Consensus 197 Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~ 275 (393)
||+|.+++|+++|+||+|.|||++++|+.+|++|++||+.|+++ +|.||+|.|+|. +|+||+ |+|.|+|++|.++|.
T Consensus 332 DfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~eq-vH~GIkG~V~D~-~G~~I~NA~IsV~ginHdv~T~ 409 (500)
T KOG2649|consen 332 DWNYLHTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVEQ-VHRGIKGLVFDD-TGNPIANATISVDGINHDVTTA 409 (500)
T ss_pred chhhhhcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHHH-HHhccceeEEcC-CCCccCceEEEEecCcCceeec
Confidence 99999999999999999999999999999999999999999997 899999999994 999999 999999999999987
Q ss_pred cCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC--ceEEEEEEccCCCC
Q 037202 276 RAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE--TATADFILDPDSAL 325 (393)
Q Consensus 276 ~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~--~~~~~f~L~~~~~~ 325 (393)
.+|||||+|+|| .|.|+|+++||.|.+++|+|.. +..+||+|.+...+
T Consensus 410 -~~GDYWRLL~PG-~y~vta~A~Gy~~~tk~v~V~~~~a~~~df~L~~~~~~ 459 (500)
T KOG2649|consen 410 -KEGDYWRLLPPG-KYIITASAEGYDPVTKTVTVPPDRAARVNFTLQRSIPQ 459 (500)
T ss_pred -CCCceEEeeCCc-ceEEEEecCCCcceeeEEEeCCCCccceeEEEecCCCc
Confidence 999999999999 9999999999999999999997 88999999988643
No 3
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=3.2e-83 Score=632.07 Aligned_cols=315 Identities=45% Similarity=0.800 Sum_probs=293.1
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
|++||+|+|||+|++++||++++.++ .||.|+++|+||||||+|++++++|+++||++|.+|+++++||++++|+|||+
T Consensus 29 l~~IG~S~eGR~I~~l~Is~~~~~~~~~kp~v~~~g~iHg~E~ig~~~~l~li~~L~~~y~~d~~v~~ll~~~~i~IvP~ 108 (375)
T cd03863 29 LYSVGKSVELRELYVMEISDNPGIHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPS 108 (375)
T ss_pred EEEcccCCccceEEEEEEecCCCcccCCCCeEEEEccccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEec
Confidence 57899999999999999998775443 69999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccc---------ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCcee--cccC
Q 037202 80 MNPDGYALK---------RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISL--IQRY 148 (393)
Q Consensus 80 ~NPDG~~~~---------~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~--~p~~ 148 (393)
+|||||++. +|.|++|||||||||++|... ...+||||+||++|+.+++|+++++||+|+++ +||+
T Consensus 109 ~NPDG~e~~~~~~~~~~~~R~n~~GVDLNRNfp~~~~~~---~~~~EpEt~Av~~~~~~~~f~l~~~lHsg~~~~~yPy~ 185 (375)
T cd03863 109 MNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQV---TDPPQPETLAVMSWLKSYPFVLSANLHGGSLVVNYPFD 185 (375)
T ss_pred cCCchHHheecCCcccccccccCCCcccccCCccccccC---CCCCcHHHHHHHHHHhhCCceEEEEecCCCEEEEccCc
Confidence 999999987 488999999999999999753 34679999999999999999999999999976 7887
Q ss_pred C--------CCCCCHHHHHHHHHHHHHHhccccCC---------CccccceeccceeEecCCCccccccccCCceEEEEE
Q 037202 149 Y--------YGCPDDEAFQFLASVYSRSHYNMSLS---------TEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLE 211 (393)
Q Consensus 149 y--------~~~pd~~~~~~la~~~~~~~~~m~~~---------~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~E 211 (393)
+ ..+||++.|+.||+.|+.+|..|+.+ ..|..|++||+.||+++|+|+||+|.+++|+++|+|
T Consensus 186 ~~~~~~~~~~~~pd~~~~~~la~~~a~a~~~m~~~~~c~~~~~~~~~~~Gi~nga~wY~~~GgmqDw~y~~~~~~e~T~E 265 (375)
T cd03863 186 DDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIE 265 (375)
T ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCccCCceEEecCCChhhhhhhhcCeEEEEEe
Confidence 5 45789999999999999999999842 247889999999999999999999999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCce
Q 037202 212 ISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGKR 290 (393)
Q Consensus 212 l~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~ 290 (393)
|+|+|+|++++|+.+|++|+++|++++++ +|.||+|+|+|+.+|+||+ |+|.|.|++++++|+ .+|+|||+|+|| +
T Consensus 266 l~~~k~p~~~~l~~~w~~n~~all~~~~~-~~~gI~G~V~D~~~g~pl~~AtV~V~g~~~~~~Td-~~G~f~~~l~pG-~ 342 (375)
T cd03863 266 LGCVKYPKEEELPKYWEQNRRSLLQFMKQ-VHRGVRGFVLDATDGRGILNATISVADINHPVTTY-KDGDYWRLLVPG-T 342 (375)
T ss_pred cCcccCCCHHHHHHHHHHHHHHHHHHHHH-hcCeEEEEEEeCCCCCCCCCeEEEEecCcCceEEC-CCccEEEccCCe-e
Confidence 99999999999999999999999999986 8999999999988999999 999999999999887 899999999999 9
Q ss_pred eEEEEEecCcceeeEEEEeCC--ceEEEEEEcc
Q 037202 291 YEVMASMPGYKPKSTSIWLEE--TATADFILDP 321 (393)
Q Consensus 291 Y~v~vs~~Gy~~~~~~v~v~~--~~~~~f~L~~ 321 (393)
|+|+||+.||++++++|.|.. .+.+||.|++
T Consensus 343 ytl~vs~~GY~~~~~~v~V~~~~~~~~~~~L~~ 375 (375)
T cd03863 343 YKVTASARGYDPVTKTVEVDSKGAVQVNFTLSR 375 (375)
T ss_pred EEEEEEEcCcccEEEEEEEcCCCcEEEEEEecC
Confidence 999999999999999999986 7889999975
No 4
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=6.6e-83 Score=630.66 Aligned_cols=316 Identities=42% Similarity=0.770 Sum_probs=288.1
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccC-ChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK-DSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~-d~~~~~ll~~~~i~ivP 78 (393)
|++||+|+|||+|++++||++++.++ .||.|+++|+|||+||+|++++++|+++||.+|.. |+++++||++++|+|||
T Consensus 28 l~~IG~S~eGR~I~~l~Is~~~~~~~~~kP~v~i~g~iHg~E~ig~~~~l~l~~~L~~~y~~~d~~v~~LLd~~~i~IvP 107 (402)
T cd03865 28 IYTVGRSFEGRELLVIEMSDNPGEHEPGEPEFKYIGNMHGNEAVGRELLIYLAQYLCNEYQKGNETIINLIHSTRIHIMP 107 (402)
T ss_pred EEecccccCCCeEEEEEeecCCCCCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCEEEEEe
Confidence 57999999999999999999877554 69999999999999999999999999999999964 89999999999999999
Q ss_pred ccCccccccc------------ccCCCCCCCCCCCCCCCCCC--------CCC------------CCCCChHHHHHHHHH
Q 037202 79 SMNPDGYALK------------RRGNANNIDLNRDFPDQFFP--------MNN------------DEEACQPETRAIMSW 126 (393)
Q Consensus 79 ~~NPDG~~~~------------~R~N~~gvDLNRNfp~~w~~--------~~~------------~~~~sepEt~ai~~~ 126 (393)
++|||||++. +|.|++|||||||||+.+.. .+. .....||||+|+|+|
T Consensus 108 ~~NPDG~e~~~~~~~~~~~w~~~R~Na~GvDLNRNFp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pEt~Avm~w 187 (402)
T cd03865 108 SLNPDGFEKAASQPGELKDWFVGRSNAQGIDLNRNFPDLDRIVYVNEREGGPNNHLLKNMKKAVDENTKLAPETKAVIHW 187 (402)
T ss_pred eeCCchHHhhhhcCccccchhhhcccccCcccCCCCCcccchhhhhhccCCCccccccccccccccccCCChHHHHHHHH
Confidence 9999999863 49999999999999986321 000 123579999999999
Q ss_pred HHhcceeEEEecCCCcee--cccC---------CCCCCCHHHHHHHHHHHHHHhccccCC-----------Cccccceec
Q 037202 127 VRQIHFTASASLHGVISL--IQRY---------YYGCPDDEAFQFLASVYSRSHYNMSLS-----------TEFQGGIIN 184 (393)
Q Consensus 127 ~~~~~~~~~idlHsg~~~--~p~~---------y~~~pd~~~~~~la~~~~~~~~~m~~~-----------~~y~~g~~~ 184 (393)
+++++|++++|||+|+++ |||. |+.+||++.|+.||..|+.+|+.|+.+ ..|..||+|
T Consensus 188 ~~~~~FvlsanlHgG~lva~YP~D~~~~~~~~~~s~~pDd~~f~~lA~~Ya~~h~~m~~~~~~~c~~~~~~~~f~~GitN 267 (402)
T cd03865 188 IMDIPFVLSANLHGGDLVANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSLNPAMSDPNRPPCRKNDDDSSFVDGTTN 267 (402)
T ss_pred HHhCCcEEEEEccCccEEEECCCCCCCCCCcccccCCCChHHHHHHHHHHHhhCHHhhcCCCCCCCCCCccccCCCCeec
Confidence 999999999999999988 6764 457899999999999999999999742 357899999
Q ss_pred cceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceE
Q 037202 185 GASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSI 263 (393)
Q Consensus 185 ~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V 263 (393)
|+.||++.||||||+|.+.+|+++|+||+|+|+|++++|+.+|++|++|||+++++ +|.||+|+|+|+ +|+||+ |+|
T Consensus 268 Ga~Wy~~~GgmqD~ny~~~nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~~~q-~~~gI~G~V~D~-~g~pI~~AtV 345 (402)
T cd03865 268 GGAWYSVPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQYWEDNKNSLVNYIEQ-VHRGVKGFVKDL-QGNPIANATI 345 (402)
T ss_pred CceecccCCcccchhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH-hccceEEEEECC-CCCcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999986 899999999997 799999 999
Q ss_pred EEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC--ceEEEEEEc
Q 037202 264 TIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE--TATADFILD 320 (393)
Q Consensus 264 ~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~--~~~~~f~L~ 320 (393)
.|.|+++.++|+ .+|+||++|+|| +|+|+|++.||++++++|+|.. ++.+||.|+
T Consensus 346 ~V~g~~~~~~T~-~~G~Y~~~L~pG-~Ytv~vsa~Gy~~~~~~V~V~~~~~~~vdf~Le 402 (402)
T cd03865 346 SVEGIDHDITSA-KDGDYWRLLAPG-NYKLTASAPGYLAVVKKVAVPYSPAVRVDFELE 402 (402)
T ss_pred EEEcCccccEEC-CCeeEEECCCCE-EEEEEEEecCcccEEEEEEEcCCCcEEEeEEeC
Confidence 999999988887 899999999999 9999999999999999999987 888999985
No 5
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=100.00 E-value=1e-82 Score=631.19 Aligned_cols=316 Identities=41% Similarity=0.776 Sum_probs=289.0
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccC-ChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK-DSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~-d~~~~~ll~~~~i~ivP 78 (393)
|++||+|+|||+|++++||++++.++ .||+|+++|+|||+||+|++++++|+++||++|.. |+++++||++++|+|||
T Consensus 24 l~sIG~SveGR~i~~l~is~~~~~~~~~kp~v~~~g~iHg~E~ig~e~ll~l~~~L~~~y~~~d~~v~~lL~~~~i~ivP 103 (392)
T cd03864 24 IYSIGRSVEGRHLYVLEFSDNPGIHEPLEPEFKYVGNMHGNEVLGRELLIQLSEFLCEEYRNGNERITRLIQDTRIHILP 103 (392)
T ss_pred EEEeeeccCCceEEEEEecCCCccccCCCCEEEEEcccCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCeEEEEe
Confidence 57999999999999999999876544 59999999999999999999999999999999964 89999999999999999
Q ss_pred ccCccccccc------------ccCCCCCCCCCCCCCCCCCC------CCC----------CCCCChHHHHHHHHHHHhc
Q 037202 79 SMNPDGYALK------------RRGNANNIDLNRDFPDQFFP------MNN----------DEEACQPETRAIMSWVRQI 130 (393)
Q Consensus 79 ~~NPDG~~~~------------~R~N~~gvDLNRNfp~~w~~------~~~----------~~~~sepEt~ai~~~~~~~ 130 (393)
++|||||++. +|.|++|||||||||+.|.. .++ ..+++||||+||++|++++
T Consensus 104 ~~NPDG~e~~~~~~~~~~~~~~~R~Na~GVDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~~~~epET~Av~~~~~~~ 183 (392)
T cd03864 104 SMNPDGYEVAARQGPEFNGYLVGRNNANGVDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWKSQVEPETLAVIQWMQNY 183 (392)
T ss_pred eeCCchHHhhhccCCCcCccccccccccCcccccCCCcccccchhhhccCCccccCCCccccccccCHHHHHHHHHHHhc
Confidence 9999999873 79999999999999987521 111 1368999999999999999
Q ss_pred ceeEEEecCCCcee--cccC--------------CCCCCCHHHHHHHHHHHHHHhccccCC----CccccceeccceeEe
Q 037202 131 HFTASASLHGVISL--IQRY--------------YYGCPDDEAFQFLASVYSRSHYNMSLS----TEFQGGIINGASWYP 190 (393)
Q Consensus 131 ~~~~~idlHsg~~~--~p~~--------------y~~~pd~~~~~~la~~~~~~~~~m~~~----~~y~~g~~~~~~~y~ 190 (393)
+|++++|+|+|+++ +||. |+.+||++.|+.||..|+.+|+.|+.+ ..|..||+||+.||+
T Consensus 184 ~fvls~nlHgG~~v~~YPyd~~~~~~~~~~~~~~~~~tpDd~~f~~la~~ya~~h~~m~~~~~c~~~f~~gitnGa~wy~ 263 (392)
T cd03864 184 NFVLSANLHGGAVVANYPYDKSREPRVRGFRRTAYSPTPDDKLFQKLAKTYSYAHGWMHKGWNCGDYFDEGITNGASWYS 263 (392)
T ss_pred CcEEEEEccCCceeeeCCcccccccccccccccccCCCCChHHHHHHHHHHHHhCCcccCCCCCcccCCCCcccCceeEe
Confidence 99999999999987 6764 345899999999999999999999864 368999999999999
Q ss_pred cCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEecee
Q 037202 191 IYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGIN 269 (393)
Q Consensus 191 ~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~ 269 (393)
++||||||+|.+.+|+++|+||+|+|||++++|+.+|++|++|||+++++ +|.||+|+|+|+ +|+|++ |+|.|.|++
T Consensus 264 ~~GgmqD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~-~~~gI~G~V~D~-~g~pi~~A~V~v~g~~ 341 (392)
T cd03864 264 LSKGMQDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNREALISYIEQ-VHQGIKGMVTDE-NNNGIANAVISVSGIS 341 (392)
T ss_pred cCCCchhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHH-hcCeEEEEEECC-CCCccCCeEEEEECCc
Confidence 99999999999999999999999999999999999999999999999996 899999999997 799999 999999999
Q ss_pred eeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC--ceEEEEEEc
Q 037202 270 YTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE--TATADFILD 320 (393)
Q Consensus 270 ~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~--~~~~~f~L~ 320 (393)
+.++|+ .+|+|||+|+|| +|+|+||+.||++++++|+|.. ++++||+|.
T Consensus 342 ~~~~T~-~~G~y~r~l~pG-~Y~l~vs~~Gy~~~t~~v~V~~~~~~~~df~L~ 392 (392)
T cd03864 342 HDVTSG-TLGDYFRLLLPG-TYTVTASAPGYQPSTVTVTVGPAEATLVNFQLK 392 (392)
T ss_pred cceEEC-CCCcEEecCCCe-eEEEEEEEcCceeEEEEEEEcCCCcEEEeeEeC
Confidence 988887 899999999999 9999999999999999999987 567899884
No 6
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=100.00 E-value=2.7e-80 Score=610.02 Aligned_cols=312 Identities=31% Similarity=0.564 Sum_probs=289.8
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
|++||+|+|||+|++++||++++.++ .||.|+++|||||+||+|++++++|+++||.+|.+|+.+++||++++|+|+|+
T Consensus 25 l~~IG~S~eGR~l~~l~Is~~~~~~~~~kp~v~~~~giHg~E~ig~e~~l~l~~~L~~~y~~d~~v~~ll~~~~i~ivP~ 104 (363)
T cd06245 25 LTSLGQSVEFRPILSLEISNKPNNSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCMNYGKNPAVTKLIDRTRIVIVPS 104 (363)
T ss_pred EEEeeecCCCceEEEEEecCCCCCCCCCCCEEEEECCccCCcHHHHHHHHHHHHHHHHHccCCHHHHHHHhCCEEEEEec
Confidence 57899999999999999998775443 69999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccc---------cCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCcee--cccC
Q 037202 80 MNPDGYALKR---------RGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISL--IQRY 148 (393)
Q Consensus 80 ~NPDG~~~~~---------R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~--~p~~ 148 (393)
+|||||++++ |.||+|||||||||+.|.+ ..+++||||+|+++|+.+.+|+++++||+|+++ +||+
T Consensus 105 ~NPDG~e~~~~~~~~~~~~r~na~GvDLNRNf~~~~~g---~~~~sepEt~Av~~~~~~~~f~l~~~lH~~~~~~~yPy~ 181 (363)
T cd06245 105 LNPDGREKAQEKQCTSKEGHTNAHGKDLDTDFTSNASN---MSADVQPETKAIIDNLISKDFTLSVALDGGSVVATYPYD 181 (363)
T ss_pred cCCchHHHeecCCCcccCCCCCcccccCCCCCCcccCC---CCCCCcHHHHHHHHHHHhCCceEEEEEcCCcEEEEecCC
Confidence 9999999873 7899999999999988754 478999999999999999999999999999987 7887
Q ss_pred CC--CCCCHHHHHHHHHHHHHHhccccCC---------CccccceeccceeEecCCCccccccccCCceEEEEEecCCCC
Q 037202 149 YY--GCPDDEAFQFLASVYSRSHYNMSLS---------TEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKW 217 (393)
Q Consensus 149 y~--~~pd~~~~~~la~~~~~~~~~m~~~---------~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~ 217 (393)
|. .+||++.++.||+.|+.+|+.|+.+ ..|..|++||+.||++.|+||||+|.+.+|+++|+|++|+|+
T Consensus 182 ~~~~~~pd~~~~~~la~~~a~ah~~m~~~~~~c~~~~~~~~~~Gitnga~wy~~~g~mqd~~y~~~~~~e~t~e~~~~k~ 261 (363)
T cd06245 182 KPVQTVENKETLKHLAKVYANNHPTMHLGQPGCPNNSDENIPGGVMRGAEWNSHLGSMKDFSVDFGHCPEITVYTSCCLF 261 (363)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhChhhhcCCCCCCCCcccccCCCccccceeecccCCcchhhhhhcCCceeEEEeccccC
Confidence 64 5789999999999999999999753 257899999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEE
Q 037202 218 PSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMAS 296 (393)
Q Consensus 218 p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs 296 (393)
|++++|+.+|++|++||+.++++ +|.||+|+|+|. +|+||+ |+|.|.|.. .++|+ .+|+|++.|+|| +|+|+++
T Consensus 262 P~~~~l~~~w~~n~~all~~~~~-~~~gI~G~V~d~-~g~pi~~A~V~v~g~~-~~~T~-~~G~y~~~L~pG-~y~v~vs 336 (363)
T cd06245 262 PSASQLPDLWAENKKSLLSMIVE-AHKGVHGVVTDK-AGKPISGATIVLNGGH-RVYTK-EGGYFHVLLAPG-QHNINVI 336 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-cCcEEEEEEEcC-CCCCccceEEEEeCCC-ceEeC-CCcEEEEecCCc-eEEEEEE
Confidence 99999999999999999999986 899999999997 899999 999999975 67776 899999999999 9999999
Q ss_pred ecCcceeeEEEEeCC--ceEEEEEEc
Q 037202 297 MPGYKPKSTSIWLEE--TATADFILD 320 (393)
Q Consensus 297 ~~Gy~~~~~~v~v~~--~~~~~f~L~ 320 (393)
+.||++++++|+|.. .+.+||+|+
T Consensus 337 ~~Gy~~~~~~V~v~~~~~~~~~f~L~ 362 (363)
T cd06245 337 AEGYQQEHLPVVVSHDEASSVKIVLD 362 (363)
T ss_pred EeCceeEEEEEEEcCCCeEEEEEEec
Confidence 999999999999986 778899986
No 7
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=3.3e-77 Score=591.18 Aligned_cols=312 Identities=40% Similarity=0.751 Sum_probs=284.3
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCC-CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVE-EPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~-~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
|++||+|+|||+|++++||++++.+ ..+|.|+++|||||+||+|++++++|+++|+++|.+|+.++++|++++|+|+|+
T Consensus 28 l~~IG~S~eGR~i~~l~ig~~~~~~~~~~P~v~~~~~iHg~E~ig~~~~l~l~~~L~~~y~~d~~i~~lL~~~~i~ivP~ 107 (376)
T cd03866 28 LHSIGQSVEGRELWVLVLGRFPREHRIGIPEFKYVANMHGNEVVGRELLLHLIDYLVTSYGSDPVITRLLNSTRIHIMPS 107 (376)
T ss_pred EEEeeccCCCceEEEEEeccCCccccCCCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCEEEEEec
Confidence 4799999999999999999866432 368999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccc--------ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCcee--cccCC
Q 037202 80 MNPDGYALK--------RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISL--IQRYY 149 (393)
Q Consensus 80 ~NPDG~~~~--------~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~--~p~~y 149 (393)
+|||||++. +|.|++|||||||||+.|... ..++||||+|+++|+++.+|++++|||+|+++ +||++
T Consensus 108 ~NPDG~e~~~~~~~~~~~R~N~~GvDLNRnf~~~w~~~---~~~sepEt~al~~~~~~~~~~l~~~~H~~~~~~~YP~~~ 184 (376)
T cd03866 108 MNPDGFEASKPDCYYSVGRYNKNGYDLNRNFPDAFEEN---NEQRQPETRAVMEWLKSETFVLSANLHGGALVASYPYDN 184 (376)
T ss_pred cCCchhhhcccccccccccccCCCcccCcCchhhhccC---CCCCcHHHHHHHHHHHhcCcEEEEEccCCceEEeccccC
Confidence 999999996 899999999999999999764 24599999999999999999999999999987 77765
Q ss_pred C-----------CCCCHHHHHHHHHHHHHHhccccCC------CccccceeccceeEecCCCccccccccCCceEEEEEe
Q 037202 150 Y-----------GCPDDEAFQFLASVYSRSHYNMSLS------TEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEI 212 (393)
Q Consensus 150 ~-----------~~pd~~~~~~la~~~~~~~~~m~~~------~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El 212 (393)
. .+||++.++.||+.|+.+|..|+.+ ..|..|++||+.||+++|+|+||+|.+++|+++|+||
T Consensus 185 ~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~g~~~~~~~~~~~Gi~nga~~Y~~sG~~~Dw~y~~~~~~~~T~El 264 (376)
T cd03866 185 GNGGTGQQGYRSVSPDDDVFVHLAKTYSYNHANMYKGNHCSDKQSFPSGITNGYQWYPLQGGMQDYNYVWAQCFEITLEL 264 (376)
T ss_pred CCCccccccCCCCCCCHHHHHHHHHHHHHhCHHhhCCCCCCccccCCCCcccceEEEEcCCCchhhhhhhCceEEEEEEe
Confidence 3 3589999999999999999999754 5789999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEeceeee--eeeecCceeEEeecCCCc
Q 037202 213 SDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYT--VNAGRAFADYYRLLTPGK 289 (393)
Q Consensus 213 ~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~--~~t~~~~G~y~r~l~pG~ 289 (393)
+|+|+|++++|+++|++|+++|+.++++ ++.||+|+|+|. +|+||+ |+|.|.|.++. ++|+ .+|+|++.|+||
T Consensus 265 ~~~k~p~~~~l~~~w~~n~~~ll~~i~q-~~~gI~G~V~D~-~g~pi~~A~V~v~g~~~~~~~~T~-~~G~y~~~l~pG- 340 (376)
T cd03866 265 SCCKYPPEEQLPAFWEDNKAALIEYIKQ-VHLGVKGQVFDS-NGNPIPNAIVEVKGRKHICPYRTN-VNGEYFLLLLPG- 340 (376)
T ss_pred cCCCCCCHHHHHHHHHHhHHHHHHHHHH-hcCceEEEEECC-CCCccCCeEEEEEcCCceeEEEEC-CCceEEEecCCe-
Confidence 9999999999999999999999999985 899999999997 899999 89999998753 4565 899999999999
Q ss_pred eeEEEEEecCcceeeEEEEeCC------ceEEEEEE
Q 037202 290 RYEVMASMPGYKPKSTSIWLEE------TATADFIL 319 (393)
Q Consensus 290 ~Y~v~vs~~Gy~~~~~~v~v~~------~~~~~f~L 319 (393)
+|+|+++++||++++++|.+.. +.++||.|
T Consensus 341 ~Y~v~vsa~Gy~~~~~~v~v~~~~~~~~~~~~~~~~ 376 (376)
T cd03866 341 KYMINVTAPGFKTVITNVIIPYNPDNFSALKHDFSL 376 (376)
T ss_pred eEEEEEEeCCcceEEEEEEeCCCCCccceeEeeeeC
Confidence 9999999999999999998874 34455543
No 8
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=100.00 E-value=9.4e-75 Score=575.79 Aligned_cols=315 Identities=43% Similarity=0.780 Sum_probs=288.8
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCC-CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVE-EPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~-~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
+++||+|+|||+|++++||++++.. ..||.|+++||||||||+|++++++|+++||++|..|+.+++||++++|+|||+
T Consensus 24 l~~iG~S~eGR~i~~l~is~~~~~~~~~kp~v~~~~~iH~~E~ig~~~~l~l~~~L~~~y~~d~~~~~ll~~~~~~ivP~ 103 (372)
T cd03868 24 LHSIGRSVEGRELWVLRITDNVNRREPGEPMFKYVGNMHGDETVGRQVLIYLAQYLLENYGGDERVTELVNTTDIYLMPS 103 (372)
T ss_pred EEeccccCCCceEEEEEEecCCCCCCCCCCeEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhCCEEEEEee
Confidence 4789999999999999999876543 359999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccc-----------ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCcee--cc
Q 037202 80 MNPDGYALK-----------RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISL--IQ 146 (393)
Q Consensus 80 ~NPDG~~~~-----------~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~--~p 146 (393)
+|||||++. +|.|++|||||||||++|.....+.+++||||+|+++|+.+++|++++|+|+++++ +|
T Consensus 104 ~NPDG~~~~~~~~~~~~~~~~R~n~~GvDLNRnf~~~~~~~~~~~~~sepEt~av~~~~~~~~~~l~~~lH~~~~~~~yP 183 (372)
T cd03868 104 MNPDGFERSQEGDCSCGGYGGRENANNVDLNRNFPDQFEGKLQRLSERQPETVAMMKWIRSNPFVLSGNLHGGSVVASYP 183 (372)
T ss_pred eCCchHHhhcccCccccCCCccCCCCCccCCCCCCcccCCcCCCCCCCCHHHHHHHHHHhhCCcEEEEEccCccEEEecc
Confidence 999999974 58899999999999999987655689999999999999999999999999999976 67
Q ss_pred cCCC----------CCCCHHHHHHHHHHHHHHhccccC------CCccccceeccceeEecCCCccccccccCCceEEEE
Q 037202 147 RYYY----------GCPDDEAFQFLASVYSRSHYNMSL------STEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTL 210 (393)
Q Consensus 147 ~~y~----------~~pd~~~~~~la~~~~~~~~~m~~------~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~ 210 (393)
|++. .+||++.++.||+.++.++..|.. +..|..|+++++.||+++|+|+||+|..++|+++|+
T Consensus 184 ~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~~G~~~~~~~Y~~~G~~~Dw~y~~~~~~~~T~ 263 (372)
T cd03868 184 YDDSSSHNECGVYSKSPDDAVFKYLALTYANNHPTMRTGKPCCEGETFKDGITNGAHWYDVPGGMQDYNYLHSNCFEITL 263 (372)
T ss_pred ccccCCCCCCcccCCCCCHHHHHHHHHHHHhhCHHhhCCCCCCccccCCCCcccCceeeeCCCCcchhhhhccCeeEEEE
Confidence 7653 368999999999999999987743 678999999999999999999999999999999999
Q ss_pred EecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCc
Q 037202 211 EISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGK 289 (393)
Q Consensus 211 El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~ 289 (393)
||+|+|+|++++|+++|++|+++|+.++++ ++.+|+|+|+|+ +|+|++ |+|.|.|.++.+.|+ .+|+|++.|+||
T Consensus 264 El~~~~~p~~~~l~~~w~~n~~al~~~~~~-~~~~i~G~V~d~-~g~pv~~A~V~v~~~~~~~~td-~~G~y~~~l~~G- 339 (372)
T cd03868 264 ELSCCKYPPASELPEEWNNNRESLLAYLEQ-VHIGVKGFVRDA-SGNPIEDATIMVAGIDHNVTTA-KFGDYWRLLLPG- 339 (372)
T ss_pred EecCCCCCCHHHHHHHHHHhHHHHHHHHHH-hCCceEEEEEcC-CCCcCCCcEEEEEecccceEeC-CCceEEecCCCE-
Confidence 999999999999999999999999999986 899999999998 899999 999999988888777 899999889999
Q ss_pred eeEEEEEecCcceeeEE-EEeCC--ceEEEEEE
Q 037202 290 RYEVMASMPGYKPKSTS-IWLEE--TATADFIL 319 (393)
Q Consensus 290 ~Y~v~vs~~Gy~~~~~~-v~v~~--~~~~~f~L 319 (393)
+|+|++++.||++++++ +.|.. .+.+||+|
T Consensus 340 ~Y~l~vs~~Gf~~~~~~~v~v~~g~~~~~~~~L 372 (372)
T cd03868 340 TYTITAVAPGYEPSTVTDVVVKEGEATSVNFTL 372 (372)
T ss_pred EEEEEEEecCCCceEEeeEEEcCCCeEEEeeEC
Confidence 99999999999999887 55765 67788875
No 9
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=100.00 E-value=1.4e-74 Score=576.68 Aligned_cols=315 Identities=42% Similarity=0.748 Sum_probs=282.9
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCC-CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhc-cCChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVE-EPEPAFKFIGNVHGDEPVGRELLILLANWICDNH-VKDSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~-~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y-~~d~~~~~ll~~~~i~ivP 78 (393)
+++||+|+|||+|++++||++++.. ..||.|+++||||||||+|++++++|+++||.+| ..|+.+++||++++|+|||
T Consensus 24 ~~~iG~S~EGR~i~~l~is~~~~~~~~~kp~v~i~~giHg~E~ig~~~~~~l~~~L~~~~~~~d~~v~~ll~~~~i~ivP 103 (395)
T cd03867 24 TYSIGRSFEGRDLLVIEFSSNPGQHELLEPEVKYIGNMHGNEVLGRELLIYLAQFLCSEYLLGNQRIQTLINTTRIHLLP 103 (395)
T ss_pred EEEccccCCCceEEEEEeccCCCcccccCCeEEEEccccCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhCcEEEEEe
Confidence 5789999999999999999876543 3589999999999999999999999999999988 4689999999999999999
Q ss_pred ccCccccccc------------ccCCCCCCCCCCCCCCCCCCC---------CC---C------CCCChHHHHHHHHHHH
Q 037202 79 SMNPDGYALK------------RRGNANNIDLNRDFPDQFFPM---------NN---D------EEACQPETRAIMSWVR 128 (393)
Q Consensus 79 ~~NPDG~~~~------------~R~N~~gvDLNRNfp~~w~~~---------~~---~------~~~sepEt~ai~~~~~ 128 (393)
++|||||+++ +|.||+|||||||||+.|... +. + .+.|||||+||++|+.
T Consensus 104 ~~NPDG~e~~~~~~~~~~~wr~~R~n~~GvDLNRNf~~~~~~~~~~~~~~g~~~~~~p~p~~~~~~~sepEt~Av~~~~~ 183 (395)
T cd03867 104 SMNPDGYEAAASEGAGYNGWTNGRQNAQNIDLNRNFPDLTSEVYRRRRQRGARTDHIPIPDSYWFGKVAPETKAVMKWMR 183 (395)
T ss_pred ccCCchHHhhhhcCccccccccCCcCCCCcccccCCCcchhhhcchhhcccccccCCCCccccccCccCHHHHHHHHHHh
Confidence 9999999973 478899999999999988531 10 1 2368999999999999
Q ss_pred hcceeEEEecCCCcee--cccCCC----------CCCCHHHHHHHHHHHHHHhccccCC-------Cc-cccceecccee
Q 037202 129 QIHFTASASLHGVISL--IQRYYY----------GCPDDEAFQFLASVYSRSHYNMSLS-------TE-FQGGIINGASW 188 (393)
Q Consensus 129 ~~~~~~~idlHsg~~~--~p~~y~----------~~pd~~~~~~la~~~~~~~~~m~~~-------~~-y~~g~~~~~~~ 188 (393)
+++|+++++||+|+++ +||+|+ .+||++.++.||+.|+++|..|+.+ .. +.+|+++|+.|
T Consensus 184 ~~~~~l~~s~Hs~~~~~~yP~~~t~~~~~~~~~~~~~d~~~~~~lA~~~a~a~~~~~~~~~~~~~~~~~~~g~i~~ga~~ 263 (395)
T cd03867 184 SIPFVLSASLHGGDLVVSYPYDFSRHPLEEKMFSPTPDEKVFKMLARTYADAHPTMSDRSTRRCGGNFHKRGGIINGAEW 263 (395)
T ss_pred hCCceEEEEccCcceeEEcccccccCcccccccCCCCcHHHHHHHHHHHHHhCccccCCCCCCCccccccCCCceeccee
Confidence 9999999999999976 788764 4589999999999999999988632 22 35778899999
Q ss_pred EecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEec
Q 037202 189 YPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKG 267 (393)
Q Consensus 189 y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g 267 (393)
|+++|+|+||+|.+++|+++|+||+|+|+||+++|+++|+||+++|+.++++ ++.+|+|+|+|+ +|+|++ |+|.|.|
T Consensus 264 Y~~sG~~~Dw~y~~~~~~~~T~EL~~~~~pp~~~i~~~~~e~~~~l~~~~~~-~~~~i~G~V~D~-~g~pi~~A~V~v~g 341 (395)
T cd03867 264 YSFSGGMSDFNYLHTNCFEVTVELGCDKFPPEEELYTIWQENKEALLSFMEM-VHRGIKGFVKDK-DGNPIKGARISVRG 341 (395)
T ss_pred eEcCCCcchhhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh-ccceeEEEEEcC-CCCccCCeEEEEec
Confidence 9999999999999999999999999999999999999999999999999986 789999999997 799999 9999999
Q ss_pred eeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC----ceEEEEEE
Q 037202 268 INYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE----TATADFIL 319 (393)
Q Consensus 268 ~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~----~~~~~f~L 319 (393)
.++.++|+ .+|+|++.|+|| +|+|++++.||++++++|++.. +.++||+|
T Consensus 342 ~~~~~~Td-~~G~y~~~l~~G-~y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~d~~l 395 (395)
T cd03867 342 IRHDITTA-EDGDYWRLLPPG-IHIVSAQAPGYTKVMKRVTLPARMKRAGRVDFVL 395 (395)
T ss_pred cccceEEC-CCceEEEecCCC-cEEEEEEecCeeeEEEEEEeCCcCCCceEeeeEC
Confidence 98888887 899999999999 9999999999999999999963 67888876
No 10
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=100.00 E-value=1.1e-68 Score=533.56 Aligned_cols=315 Identities=48% Similarity=0.898 Sum_probs=286.2
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCC-CCCEEEEEeccCCCChhHHHHHHHHHHHHHHhcc-CChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEE-PEPAFKFIGNVHGDEPVGRELLILLANWICDNHV-KDSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~-~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~-~d~~~~~ll~~~~i~ivP 78 (393)
+.+||+|+|||+|++++||++++... .||.|+++|++||+||+|++++++|+++|+.+|. +|+.+++||++++|+|||
T Consensus 24 ~~~iG~S~eGR~i~~l~i~~~~~~~~~~kp~v~i~agiH~~E~~g~~~~~~l~~~L~~~~~~~d~~~~~ll~~~~~~ivP 103 (374)
T cd03858 24 LYSIGKSVQGRDLWVLEISDNPGVHEPGEPEFKYVGNMHGNEVVGRELLLRLAQYLCENYGAGDPRITRLVDNTRIHIMP 103 (374)
T ss_pred EEEcccCCCCCEEEEEEEecCCCCCCCCCceEEEeccccCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEc
Confidence 46899999999999999998765433 7999999999999999999999999999999987 799999999999999999
Q ss_pred ccCcccccc---------cccCCCCCCCCCCCCCCCCCCC--CCCCCCChHHHHHHHHHHHhcceeEEEecCCCcee--c
Q 037202 79 SMNPDGYAL---------KRRGNANNIDLNRDFPDQFFPM--NNDEEACQPETRAIMSWVRQIHFTASASLHGVISL--I 145 (393)
Q Consensus 79 ~~NPDG~~~---------~~R~N~~gvDLNRNfp~~w~~~--~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~--~ 145 (393)
++|||||++ .+|.|+.|||||||||..|... .+..+++||||+|+++|+.+++|++++|+|+++++ +
T Consensus 104 ~~NPDG~~~~~~~~~~w~~~R~n~~GvDLNRnf~~~~~~~~~~G~~~~sepEt~al~~~~~~~~~~~~i~~Hs~~~~~~y 183 (374)
T cd03858 104 SMNPDGYEKAAEGDCGGLTGRYNANGVDLNRNFPDLFFTNYRSSDNGPRQPETKAVMNWIKSIPFVLSANLHGGALVANY 183 (374)
T ss_pred ccCCchhhhhcccCCcccccCCCCcceecccCCCcccccccccCCCcccCHHHHHHHHHHhhCCceEEEEccCCceEEEc
Confidence 999999998 3688999999999999999754 35588999999999999999999999999999865 6
Q ss_pred ccCCC---------CCCCHHHHHHHHHHHHHHhccccCC--------CccccceeccceeEecCCCccccccccCCceEE
Q 037202 146 QRYYY---------GCPDDEAFQFLASVYSRSHYNMSLS--------TEFQGGIINGASWYPIYGGMQDWNYIYGGCFEL 208 (393)
Q Consensus 146 p~~y~---------~~pd~~~~~~la~~~~~~~~~m~~~--------~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~ 208 (393)
||.+. .+||++.++.||+.++.++..|+.+ ..|..|+++++.||+++|+|+||+|..++++++
T Consensus 184 p~~~~~~~~~~~~~~~~d~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~y~~G~~~~~~~Y~~~G~~~Dw~y~~~~~~~~ 263 (374)
T cd03858 184 PYDDSPSGKRTAYSATPDDELFRYLAKTYADAHPTMHKGGPCCCNDDEEFPGGITNGAAWYSVTGGMQDWNYLHTNCFEI 263 (374)
T ss_pred ccccCCCccccCCCCCCCHHHHHHHHHHHHHhCHHhcCCCCCCCcccccCCCCcEEcceeeEcCCCchhhhhhccCceEE
Confidence 77664 3578999999999999999888754 378999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCC
Q 037202 209 TLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTP 287 (393)
Q Consensus 209 T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~p 287 (393)
|+||+|+++||+++|+++|++|+++|+.++++ ++.+|+|+|+|+ +|+|++ |+|.|.|....+.|+ .+|.|.+.|+|
T Consensus 264 t~El~~~~~p~~~~i~~i~~en~~all~l~~~-a~~~i~G~V~d~-~g~pl~~A~V~i~~~~~~~~Td-~~G~f~~~l~~ 340 (374)
T cd03858 264 TLELSCCKFPPASELPKYWEENREALLAYIEQ-VHRGIKGFVRDA-NGNPIANATISVEGINHDVTTA-EDGDYWRLLLP 340 (374)
T ss_pred EEeccCCCCCChhHhHHHHHHHHHHHHHHHhh-cCCceEEEEECC-CCCccCCeEEEEecceeeeEEC-CCceEEEecCC
Confidence 99999999999999999999999999999976 678999999998 899999 999999988888887 89999988999
Q ss_pred CceeEEEEEecCcceeeEEEEeCC---ceEEEEEE
Q 037202 288 GKRYEVMASMPGYKPKSTSIWLEE---TATADFIL 319 (393)
Q Consensus 288 G~~Y~v~vs~~Gy~~~~~~v~v~~---~~~~~f~L 319 (393)
| +|+|++++.||++++.++.+.. .+++||.|
T Consensus 341 G-~y~l~vs~~Gy~~~~~~v~v~~~g~~~~~~~~l 374 (374)
T cd03858 341 G-TYNVTASAPGYEPQTKSVVVPNDNSAVVVDFTL 374 (374)
T ss_pred E-eEEEEEEEcCcceEEEEEEEecCCceEEEeeEC
Confidence 9 9999999999999999987765 56677765
No 11
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=100.00 E-value=4e-52 Score=400.67 Aligned_cols=235 Identities=23% Similarity=0.352 Sum_probs=208.4
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+++||+|+|||+|++++|++++ ..||.|+++||+||+||+|++++++++++|+.+|.+|+.++++|++++|+|||++
T Consensus 29 ~~~iG~S~eGR~I~~l~is~~~---~~kp~v~i~~giHarE~i~~~~~l~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~ 105 (301)
T cd03870 29 KLQIGRSYEGRPIYVLKFSTGG---SNRPAIWIDAGIHSREWITQATGVWFAKKITEDYGQDPSFTAILDSMDIFLEIVT 105 (301)
T ss_pred EEecccCCCCCeEEEEEEecCC---CCCceEEEeccccccchhhHHHHHHHHHHHHHhcccCHHHHHHHHhCcEEEEeee
Confidence 4689999999999999999864 3689999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccC--------CCCCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhc-ceeE
Q 037202 81 NPDGYALK------RRG--------NANNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQI-HFTA 134 (393)
Q Consensus 81 NPDG~~~~------~R~--------N~~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~-~~~~ 134 (393)
|||||+++ ||+ ||.|||||||||..|.... +..|+|||||+||++|+.+. ++.+
T Consensus 106 NPDG~~~s~~~~r~wrknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~~~~Y~G~~pfSEpEt~av~~~~~~~~~~~~ 185 (301)
T cd03870 106 NPDGYVFTHSQNRLWRKTRSVTSGSLCVGVDPNRNWDAGFGGAGASSNPCSETYHGPYANSEVEVKSIVDFVKSHGNFKA 185 (301)
T ss_pred cCchhhheecccceeecCCCCCCCCCccccccccCCCcccCcCCCCCCCCccccCCCCCCccHHHHHHHHHHhhCCCeEE
Confidence 99999976 776 4689999999999997421 34789999999999999987 7999
Q ss_pred EEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEE
Q 037202 135 SASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTL 210 (393)
Q Consensus 135 ~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~ 210 (393)
++|+|+++++ +||+|. ..||.+.++.+|..++.++... .+..|..|.+. ..+|+++|++.||+|..++++++|+
T Consensus 186 ~l~lHS~g~~i~yP~~~~~~~~~~~~~~~~la~~~~~ai~~~-~g~~y~~g~~~-~~~y~a~G~s~Dw~y~~~~~~s~t~ 263 (301)
T cd03870 186 FISIHSYSQLLLYPYGYTTQSIPDKTELNQVAKSAVAALKSL-YGTSYKYGSII-TTIYQASGGSIDWSYNQGIKYSFTF 263 (301)
T ss_pred EEEeccCCceEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHh-cCCcccccccc-ceeecCCCChhhhhhcCCCcEEEEE
Confidence 9999999976 688775 3578889999999888877554 35788888764 5789999999999999999999999
Q ss_pred EecCC----CCCCCCChHHHHHHHHHHHHHHHHh
Q 037202 211 EISDD----KWPSAEELPTIWEYNKMSMLNLVAS 240 (393)
Q Consensus 211 El~~~----~~p~~~~i~~~~~~~~~sll~l~~~ 240 (393)
||++. +++|+++|.+..+|.+.++..+++.
T Consensus 264 El~~~g~~gF~lP~~~i~p~~~E~~~~i~~~~~~ 297 (301)
T cd03870 264 ELRDTGRYGFLLPASQIIPTAQETWLGLLTIMEH 297 (301)
T ss_pred EeCCCCCCCCCCChHHCchhhHHHHHHHHHHHHH
Confidence 99984 5799999999999999999988875
No 12
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=100.00 E-value=2.4e-52 Score=401.76 Aligned_cols=235 Identities=17% Similarity=0.305 Sum_probs=206.1
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+++||+|+|||+|++++||++. ..||.|+++||+|||||+|++++++++++|+.+|.+|+.+++||++++|+|||++
T Consensus 29 ~~~IG~S~eGR~i~~l~i~~~~---~~kp~v~i~~giHarE~i~~~~~l~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~ 105 (300)
T cd03871 29 RSQIGTTFEGRPIYLLKVGKPG---VNKPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREAIMTELLDKLDFYVLPVL 105 (300)
T ss_pred EEEeeeCCCCCeeEEEEEccCC---CCCCeEEEeccccccccccHHHHHHHHHHHHHHccCCHHHHHHHHcCeEEEEEee
Confidence 4689999999999999999862 4689999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccCC--------CCCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhc--cee
Q 037202 81 NPDGYALK------RRGN--------ANNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQI--HFT 133 (393)
Q Consensus 81 NPDG~~~~------~R~N--------~~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~--~~~ 133 (393)
|||||+++ |||| |.|||||||||..|...+ ++.|+|||||+||++|+.+. ++.
T Consensus 106 NPDG~~~s~~~~r~wrknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~~pc~~~Y~G~~p~SEpEt~Al~~~~~~~~~~~~ 185 (300)
T cd03871 106 NIDGYIYTWTKNRMWRKTRSTNAGSSCIGTDPNRNFNAGWCTVGASRNPCDETYCGSAPESEKETKALADFIRNNLSSIK 185 (300)
T ss_pred cCCcCeeeeccCHHHHHhcCCCCCCCccccccCcCCCCccCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhcCccee
Confidence 99999986 6765 469999999999997421 35899999999999999987 678
Q ss_pred EEEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEE
Q 037202 134 ASASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELT 209 (393)
Q Consensus 134 ~~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T 209 (393)
.++|+|+++++ +||+|. ..||++.++.+|+.+++++..+ .+..|..|.. ++.||+++|++.||+|..++++++|
T Consensus 186 ~~l~~HSyg~~i~~Py~~~~~~~~~~~~~~~la~~~~~ai~~~-~g~~y~~g~~-~~~~Y~a~G~s~Dw~y~~~~~~s~t 263 (300)
T cd03871 186 AYLTIHSYSQMLLYPYSYTYKLPENHAELNSVAKGAVKELASL-YGTKYTYGPG-ATTIYPAAGGSDDWAYDQGIKYSFT 263 (300)
T ss_pred EEEEeccCccEEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHh-hCCCCcCCcc-ccccccCCCCHHHHHhcCCCcEEEE
Confidence 89999999976 788774 3467888999999887776544 3667887765 5789999999999999999999999
Q ss_pred EEecCC----CCCCCCChHHHHHHHHHHHHHHHHh
Q 037202 210 LEISDD----KWPSAEELPTIWEYNKMSMLNLVAS 240 (393)
Q Consensus 210 ~El~~~----~~p~~~~i~~~~~~~~~sll~l~~~ 240 (393)
+||+|. +.+|+++|.++++|.+.++..++..
T Consensus 264 ~El~~~g~~gf~lp~~~I~~~~~E~~~~i~~~~~~ 298 (300)
T cd03871 264 FELRDKGRYGFLLPESQIKPTCEETMLAVKYIANY 298 (300)
T ss_pred EEeCCCCCCCCCCCHHHCccccHHHHHHHHHHHHh
Confidence 999873 6789999999999999998888753
No 13
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=100.00 E-value=3.2e-52 Score=401.48 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=207.2
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+++||+|+|||+|++++|++++ ...||.|+++||+||+||+|++++++++++|++.|..|+.++++|++++|+|||++
T Consensus 28 ~~~iG~S~egR~I~~l~is~~~--~~~k~~v~i~~giHarE~i~~~~~l~~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~ 105 (300)
T cd06246 28 KIHIGSSFEKRPLYVLKVSGKE--QTAKNAIWIDCGIHAREWISPAFCLWFVGHATQFYGIDGQMTNLLRHMDFYIMPVM 105 (300)
T ss_pred EEecccCCCCCeEEEEEEeCCC--CCCCCeEEEecccCccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHhCeEEEEEee
Confidence 4789999999999999999753 25689999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccCC--------CCCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhc--cee
Q 037202 81 NPDGYALK------RRGN--------ANNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQI--HFT 133 (393)
Q Consensus 81 NPDG~~~~------~R~N--------~~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~--~~~ 133 (393)
|||||+++ |||| |.|||||||||..|...+ ++.|+|||||+||++|+.++ .+.
T Consensus 106 NPDG~~~~~~~~r~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~p~SEpEt~av~~~~~~~~~~i~ 185 (300)
T cd06246 106 NVDGYDYTWKKNRMWRKNRSFYANSHCIGTDLNRNFDAKWCCEGASSSSCSETYCGPYPESEPEVKAVASFLRRHINQIK 185 (300)
T ss_pred cCCceeEEEeccceeecCCCCCCCCCccCcccccccccccCCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhCCccee
Confidence 99999975 7876 579999999999997421 34799999999999999987 477
Q ss_pred EEEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEE
Q 037202 134 ASASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELT 209 (393)
Q Consensus 134 ~~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T 209 (393)
++||+|+++++ +||+|. ..||.+.++.+|..++.++... .+..|..|.+ +..+|+++|++.||+|..++++++|
T Consensus 186 ~~is~Hs~g~~i~~P~~~~~~~~~~~~~~~~la~~~~~ai~~~-~~~~y~~g~~-~~~~Y~a~G~s~Dw~y~~~~~~s~t 263 (300)
T cd06246 186 AYISMHSYSQMILFPYSYTRSKSKDHEELSLLAKEAVRAIRRT-SNNRYTHGSG-AETIYLAPGGSDDWAYDLGIKYSFT 263 (300)
T ss_pred EEEEeccCCcEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh-hCCCCeecCC-CCeeeccCCChhhHhhcCCCCEEEE
Confidence 89999999965 788775 4578899999999888766443 3678888765 3578999999999999999999999
Q ss_pred EEecCC----CCCCCCChHHHHHHHHHHHHHHHHh
Q 037202 210 LEISDD----KWPSAEELPTIWEYNKMSMLNLVAS 240 (393)
Q Consensus 210 ~El~~~----~~p~~~~i~~~~~~~~~sll~l~~~ 240 (393)
+||+|. +.+|+++|.+..+|.+.++..+++.
T Consensus 264 ~El~~~g~~gF~lp~~~I~p~~~E~~~~~~~~~~~ 298 (300)
T cd06246 264 FELRDTGTYGFLLPESYIKPTCSEALAAVKKIAWH 298 (300)
T ss_pred EEecCCCCCCCCCCHHHcccccHHHHHHHHHHHHh
Confidence 999984 5799999999999999999988764
No 14
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=100.00 E-value=5.8e-52 Score=401.27 Aligned_cols=237 Identities=23% Similarity=0.342 Sum_probs=208.3
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+++||+|+|||+|++++|+++++....||.|+++|++||+||+|++++++++++|+++|..|+.++.||++++|+|||++
T Consensus 27 ~~~iG~S~eGR~i~~l~I~~~~~~~~~k~~v~i~~giHarE~~~~~~~l~~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~ 106 (304)
T cd06248 27 LFTIGKSYEGRTILGLHIWGSGGEKGSKPAIVIHGTVHAREWISTMTVEYLAYQLLTGYGSDATVTALLDKFDFYIIPVV 106 (304)
T ss_pred EeceEECCCCCeEEEEEEecCCCCCCCCcEEEEECCcCcCccccHHHHHHHHHHHHHhhccCHHHHHHHHhCcEEEEeee
Confidence 46899999999999999998765446799999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccCCC--------CCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhc----c
Q 037202 81 NPDGYALK------RRGNA--------NNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQI----H 131 (393)
Q Consensus 81 NPDG~~~~------~R~N~--------~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~----~ 131 (393)
|||||++. ||+|+ .|||||||||..|...+ ++.|+|||||+||++|+.++ +
T Consensus 107 NPDG~~~~~~~~~~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~s~~Y~G~~~~sEpEt~av~~~~~~~~~~~~ 186 (304)
T cd06248 107 NPDGFVYTQTSDRLWRKNRQPTSGSSCVGTDLNRNWPYKWDGGGSSTNPCSETYRGESPGDAPEAKALAAFLNKLAEGQG 186 (304)
T ss_pred cCchhhhhccchhhhhhcCCCCCCCCceeecCCCCCCCcccCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhccccCc
Confidence 99999975 77764 69999999999997421 23689999999999999987 5
Q ss_pred eeEEEecCCCcee--cccCCCC---CCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCC-c
Q 037202 132 FTASASLHGVISL--IQRYYYG---CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGG-C 205 (393)
Q Consensus 132 ~~~~idlHsg~~~--~p~~y~~---~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~-~ 205 (393)
+++++|+|+++++ +||.|.. .||.+.++.||..+++++... .+..|+.|.+. +.+|+++|++.||+|...+ +
T Consensus 187 ~~~~l~~Hs~~~~i~~P~~~~~~~~~~d~~~~~~la~~~a~ai~~~-~g~~y~~g~~~-~~~y~~~G~~~D~~y~~~gi~ 264 (304)
T cd06248 187 IVGYIDWHSYSQLILYPYGYSCDAVPPNLENLEELAAGLAKAIRAV-SGTTYTVGPAC-NTLYQTTGSSVDWVYHVAGAA 264 (304)
T ss_pred eEEEEEeccCcceEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHh-cCCCCcccccc-cccccCCCCcchhhhccCCCc
Confidence 9999999999865 7887753 458899999999998877543 35678888753 6899999999999998777 8
Q ss_pred eEEEEEecC----CCCCCCCChHHHHHHHHHHHHHHHH
Q 037202 206 FELTLEISD----DKWPSAEELPTIWEYNKMSMLNLVA 239 (393)
Q Consensus 206 ~~~T~El~~----~~~p~~~~i~~~~~~~~~sll~l~~ 239 (393)
++||+||++ ++.+|+++|.+..+|++.++..++.
T Consensus 265 ~~~t~El~~~~~~gf~~p~~~i~p~~~e~~~~~~~~~~ 302 (304)
T cd06248 265 WSYQLELRDTGTYGFVLPAKQIIPTGEETWAGIKYLLK 302 (304)
T ss_pred EEEEEEeCCCCCCCCCCCHHHCcchhHHHHHHHHHHHh
Confidence 999999987 4678999999999999999988875
No 15
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=100.00 E-value=9.8e-52 Score=396.82 Aligned_cols=235 Identities=20% Similarity=0.323 Sum_probs=205.9
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
|++||+|+|||+|++++||++.+ ..||.|+++||+||+||+|++++++++++|+.+|..|+.+++||++++|+|||++
T Consensus 27 l~~iG~S~EgR~I~~l~i~~~~~--~~k~~i~i~~giHarEwi~~~~~l~~i~~Ll~~y~~d~~~~~ll~~~~i~ivP~~ 104 (298)
T cd06247 27 QHYLGCTYELRPMYYLKIGWPSD--KPKKIIWMDCGIHAREWISPAFCQWFVKEILQNYKTDPILRKVLKNVDFYVLPVL 104 (298)
T ss_pred EEeceECcCCceEEEEEeecCCC--CCCcEEEEeccccccccccHHHHHHHHHHHHHHhccCHHHHHHHhcCeEEEEeee
Confidence 47899999999999999997532 5689999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccCC--------CCCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhcc--ee
Q 037202 81 NPDGYALK------RRGN--------ANNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQIH--FT 133 (393)
Q Consensus 81 NPDG~~~~------~R~N--------~~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~~--~~ 133 (393)
|||||+++ |||| |.||||||||+.+|.... +..|+|||||+||++|+.+.+ +.
T Consensus 105 NPDGy~ys~~~~r~wRknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~pfSEpEt~ai~~~~~~~~~~i~ 184 (298)
T cd06247 105 NIDGYIYTWTTDRLWRKNRSPHNNGTCYGVDLNRNFNSQWCSIGASRNCRSNIFCGTGPESEPETKAVARLIESKKSDIL 184 (298)
T ss_pred cCCcceEEecccceecccCCCCCCCCccccccccCCCCccccCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcCcceE
Confidence 99999986 7775 469999999999997421 347899999999999999984 55
Q ss_pred EEEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEE
Q 037202 134 ASASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELT 209 (393)
Q Consensus 134 ~~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T 209 (393)
+++|+|+++++ +||+|. ..||++.++.+|..+++++... .+..|..|.+ ++.+|+++|++.||+|..+.++++|
T Consensus 185 ~~l~~Hsyg~~i~~P~g~~~~~~~n~~~~~~~a~~~~~ai~~~-~~~~y~~g~~-~~~~y~a~G~s~Dwa~~~~~~~s~t 262 (298)
T cd06247 185 CYLTIHSYGQLILLPYGYTKEPSSNHEEMMLVAQKAAAALKEK-HGTEYRVGSS-ALILYSNSGSSRDWAVDIGIPFSYT 262 (298)
T ss_pred EEEEeccCCCeEEeCCcCCCCCCCCHHHHHHHHHHHHHHHHHh-cCCCCccCCc-ccccccCCCChhhhhhccCCCEEEE
Confidence 69999999865 788775 3567888999988888776543 3678998876 4678999999999999888899999
Q ss_pred EEecC----CCCCCCCChHHHHHHHHHHHHHHHH
Q 037202 210 LEISD----DKWPSAEELPTIWEYNKMSMLNLVA 239 (393)
Q Consensus 210 ~El~~----~~~p~~~~i~~~~~~~~~sll~l~~ 239 (393)
+||++ +++||+++|.+..+|++.++..+++
T Consensus 263 ~El~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~ 296 (298)
T cd06247 263 FELRDNGTYGFVLPEDQIQPTCEETMTAVMSMVE 296 (298)
T ss_pred EEeCCCCCCCCCCChHHCcchhHHHHHHHHHHHh
Confidence 99998 4679999999999999999998875
No 16
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=100.00 E-value=2.2e-51 Score=393.45 Aligned_cols=227 Identities=23% Similarity=0.413 Sum_probs=198.4
Q ss_pred CeEeeeeC------CCceEEEEEEeCCCC--CCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCe
Q 037202 1 MFSIGKSV------SGFPLWVIEISDKPG--VEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENM 72 (393)
Q Consensus 1 l~~iG~S~------egr~i~~l~i~~~~~--~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~ 72 (393)
+++||+|+ |||+|++++|+++.. ....||.|+++|+|||+||+|++++++|+++|+.+|..|+.+++||+++
T Consensus 7 ~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~~~~~~kp~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~v~~lL~~~ 86 (293)
T cd06226 7 WVDIGDSWDKPGGPAGYDIRALKLTNKATNSPTGPKPVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDADATWLLDYH 86 (293)
T ss_pred EEEeeEecccCcccCCceEEEEEEecCCCCcCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhcC
Confidence 47899999 999999999998754 2467999999999999999999999999999999998899999999999
Q ss_pred EEEEEeccCccccccc-----ccCCC------------CCCCCCCCCCCCCCCCC------------CCCCCChHHHHHH
Q 037202 73 HLHILPSMNPDGYALK-----RRGNA------------NNIDLNRDFPDQFFPMN------------NDEEACQPETRAI 123 (393)
Q Consensus 73 ~i~ivP~~NPDG~~~~-----~R~N~------------~gvDLNRNfp~~w~~~~------------~~~~~sepEt~ai 123 (393)
+|+|||++|||||++. ||+|+ .|||||||||..|.... ++.|+|||||+||
T Consensus 87 ~i~ivP~~NPDG~~~~~~~~~wRkNr~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~~~~p~~~~y~G~~p~SEpEt~Av 166 (293)
T cd06226 87 EIHVVPIVNPDGRKIAEQGLSQRKNANTSGGSNCSGSSYGVDLNRNYSFGWGGAGASSGDPCSETYRGPAPGSEPETAAL 166 (293)
T ss_pred eEEEEecccCCcceeeccCcceeccCCCCCCCCccccccccccccCCCCcCCcCCCCCCCCCCCCcCCCCCCCcHHHHHH
Confidence 9999999999999975 78885 59999999999996421 3478999999999
Q ss_pred HHHHHhcc----------------eeEEEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCcccccee
Q 037202 124 MSWVRQIH----------------FTASASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGII 183 (393)
Q Consensus 124 ~~~~~~~~----------------~~~~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~ 183 (393)
++|+.++. +.++||+|+++++ +||.|. ..||.+.++.||+.++. ...|.. .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~HS~g~~i~~P~g~~~~~~p~~~~~~~la~~~~~-------~~gy~~--~ 237 (293)
T cd06226 167 EDYIRGLFPDQRGPGDTDPAPDDTTGVYLDIHSYSNLVLYPWGWTTQPAPNDTQLRALGRKFAS-------FNGYTP--Q 237 (293)
T ss_pred HHHHHhccccccccccccccccccceEEEEeccCCCeEeecCcCCCCCCCCHHHHHHHHHHHhh-------cCCccc--c
Confidence 99999975 7899999999865 677665 46788899999998764 234544 3
Q ss_pred ccceeEecCCCccccccccCCceEEEEEecCCCCCCCCCh-HHHHHHHHHHHHH
Q 037202 184 NGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEEL-PTIWEYNKMSMLN 236 (393)
Q Consensus 184 ~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i-~~~~~~~~~sll~ 236 (393)
++..+|+++|++.||+|...+++++|+||+++++++.+.+ +.+|++|+++|+-
T Consensus 238 ~~~~~Y~~~G~~~Dw~y~~~gi~s~TiElg~~~~~~~~~~~~~~~~~n~~~~~~ 291 (293)
T cd06226 238 QSVGLYPTDGTTDDWSYGELGVAAYTFEIGTSFFQSCSSFESGILPDNRPALYY 291 (293)
T ss_pred ccceEEecCCChhHhHhhcCCceEEEEEccCCCCCCcccccccccccCHHHHhh
Confidence 4567899999999999999999999999999999988877 6999999999874
No 17
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=100.00 E-value=1.9e-51 Score=396.95 Aligned_cols=225 Identities=26% Similarity=0.400 Sum_probs=198.7
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+++||+|+|||+|++++|+++++....||+|+++|++||+||+|++++++|+++|+.+|..|+.++++|++++|+|||++
T Consensus 27 ~~~iG~S~eGR~i~~l~i~~~~~~~~~kp~i~i~~~iH~~E~~g~~~~l~~i~~L~~~~~~d~~~~~lL~~~~i~ivP~~ 106 (295)
T cd03859 27 VKSIGKSYEGRDIIAVKISDNVATDENKPEVLYTSTHHAREWLSLEMAIYLMHYLLENYGKDPRIQNLVDNRELWFVPVV 106 (295)
T ss_pred EEeeeecCCCCeEEEEEEecCCCCCCCCCEEEEECCcCccchhhHHHHHHHHHHHHHhhccCHHHHHHHhcCeEEEEeee
Confidence 47899999999999999999875556799999999999999999999999999999999889999999999999999999
Q ss_pred Cccccccc--------ccCC----------CCCCCCCCCCCCCCCCC----C---------CCCCCChHHHHHHHHHHHh
Q 037202 81 NPDGYALK--------RRGN----------ANNIDLNRDFPDQFFPM----N---------NDEEACQPETRAIMSWVRQ 129 (393)
Q Consensus 81 NPDG~~~~--------~R~N----------~~gvDLNRNfp~~w~~~----~---------~~~~~sepEt~ai~~~~~~ 129 (393)
|||||++. ||+| +.|||||||||.+|... + ++.|+|||||+||++|+.+
T Consensus 107 NPDG~~~~~~~~~~~~wrkn~~~~~~~~~~~~GvDLNRNf~~~w~~~~~g~s~~p~~~~y~G~~p~sepEt~av~~~~~~ 186 (295)
T cd03859 107 NPDGYEYDETTGGYRSWRKNRRDNSGDISSSDGVDLNRNYGYKWGYDSGGSSNDPSSETYRGPSAFSEPETQAIRDFVES 186 (295)
T ss_pred CCCcceEEeeccCccceeccCCCCCCCcCcceeecCCCCCCcccCCCCCCCCCCCCCCCccCCCCCchHHHHHHHHHHHh
Confidence 99999965 4544 57999999999999752 1 2379999999999999999
Q ss_pred c-ceeEEEecCCCcee--cccCCC-----CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccc
Q 037202 130 I-HFTASASLHGVISL--IQRYYY-----GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYI 201 (393)
Q Consensus 130 ~-~~~~~idlHsg~~~--~p~~y~-----~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~ 201 (393)
+ ++++++|+|+++.+ +||.+. .+||...++.||+.++.++ .|+.|.+ ..+|+++|+++||+|.
T Consensus 187 ~~~~~~~l~~Hs~g~~i~~P~~~~~~~~~~~~d~~~~~~la~~~~~~~-------~y~~~~~--~~~Y~~~G~~~Dw~y~ 257 (295)
T cd03859 187 HKNIKTALNYHTYSNLWLYPYGYQYNEPMPSKDEIDFVALGGTMAESN-------GYTPKVS--SDLYTANGDADDWMYG 257 (295)
T ss_pred CCCeEEEEEeecCCceEEeCCcCCCCCCCCCccHHHHHHHHHHHHHHh-------CCcccCc--ceeEecCCchHHHHhh
Confidence 9 99999999999865 677664 2568899999999998764 4666654 4689999999999999
Q ss_pred cCCceEEEEEecC-----CCCCCCCChHHHHHHHHHHH
Q 037202 202 YGGCFELTLEISD-----DKWPSAEELPTIWEYNKMSM 234 (393)
Q Consensus 202 ~~~~~~~T~El~~-----~~~p~~~~i~~~~~~~~~sl 234 (393)
..+++++|+||++ +++||+++|.++|++|++++
T Consensus 258 ~~~~~~~t~El~~~~~~~gf~~p~~~i~~~~~~~~~~~ 295 (295)
T cd03859 258 RHKIISLTPEMGPESGGTGFYPPDEEISRETSRNYPAL 295 (295)
T ss_pred CCCcEEEEEEeCCCCCCCCCcCCHHHHHHHHHhccCCC
Confidence 9999999999998 46899999999999998753
No 18
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=100.00 E-value=7e-51 Score=390.88 Aligned_cols=237 Identities=19% Similarity=0.309 Sum_probs=205.9
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
|++||+|+|||+|++++||++.. ..||.|+++||+||+||+|++++++++++|+.+|.+|+.++++|++++|+|||++
T Consensus 25 l~~iG~S~EGR~i~~l~i~~~~~--~~k~~i~i~~giHarEwi~~~~~~~~i~~Ll~~~~~d~~~~~lL~~~~~~ivP~v 102 (300)
T cd03872 25 LFSIGKSYEGRSLYVLKLGKRTR--SYKKAVWIDCGIHAREWIGPAFCQWFVKEALNSYQTDPAMKKMLNQLYFYVMPVF 102 (300)
T ss_pred EEEeeecCCCCceEEEEEecCCC--CCCCeEEEecccccccccCHHHHHHHHHHHHHhccCChHHHHHHhhCeEEEEeee
Confidence 47899999999999999998642 4689999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccCC--------CCCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhc--cee
Q 037202 81 NPDGYALK------RRGN--------ANNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQI--HFT 133 (393)
Q Consensus 81 NPDG~~~~------~R~N--------~~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~--~~~ 133 (393)
|||||+++ |||| |.||||||||+..|...+ ++.|+|||||+||++|+.+. ++.
T Consensus 103 NPDGy~ys~~~~r~wrknR~~~~~~~c~GVDLNRNf~~~w~~~g~s~~Pcs~~Y~G~~pfSEpEt~al~~~~~~~~~~i~ 182 (300)
T cd03872 103 NVDGYHYSWTNDRFWRKTRSKNSRYQCRGVDANRNWKVKWCDEGASLHPCDDTYCGPFPESEPEVKAVAQFLRKHRKHVR 182 (300)
T ss_pred cCCcceeeeccchhhhccCCCCCCCCccccccccccCcccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCCccce
Confidence 99999985 7765 689999999999997421 34789999999999999987 688
Q ss_pred EEEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEE
Q 037202 134 ASASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELT 209 (393)
Q Consensus 134 ~~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T 209 (393)
+++|+|+++++ +||+|+ ..|+.+.++.+|...+.++... .+..|..|.+ +..+|+++|++.||+|..+.++++|
T Consensus 183 ~~ls~Hsyg~~i~~P~g~~~~~~~~~~~~~~~~~~~~~ai~~~-~~~~Y~~g~~-~~~lY~a~G~s~Dw~y~~~i~~s~t 260 (300)
T cd03872 183 AYLSFHAYAQMLLYPYSYKYATIPNFGCVESAAYNAVNALQSA-YGVRYRYGPA-SSTLYVSSGSSMDWAYKNGIPYAFA 260 (300)
T ss_pred EEEEEccCCcEEEecCCCcCCCCCChHHHHHHHHHHHHHHHHh-hCCCCcccCc-ccceecCCCCHHHHhhcCCCcEEEE
Confidence 99999999975 788875 3467777778777666665443 2578988876 4578999999999999887889999
Q ss_pred EEecCC----CCCCCCChHHHHHHHHHHHHHHHHhh
Q 037202 210 LEISDD----KWPSAEELPTIWEYNKMSMLNLVASL 241 (393)
Q Consensus 210 ~El~~~----~~p~~~~i~~~~~~~~~sll~l~~~~ 241 (393)
+||++. +.+|+++|.+..+|++.++..++.+.
T Consensus 261 ~EL~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~ 296 (300)
T cd03872 261 FELRDTGYYGFLLPEGLIKPTCTETMLAVKNITMHL 296 (300)
T ss_pred EEeCCCCCCCCcCCHHHCCcccHHHHHHHHHHHHHH
Confidence 999984 57999999999999999999998763
No 19
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=100.00 E-value=6.6e-51 Score=401.97 Aligned_cols=235 Identities=25% Similarity=0.365 Sum_probs=210.2
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+..||+|+|||+|.+++|+.+. ...||.|+|+||+|||||+++++++++|.+|+..|++|+.++++|++.+|||+|++
T Consensus 144 ~~~IG~s~EgR~i~~lkIs~~~--~~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~~~~~~ll~~~dwyI~Pv~ 221 (418)
T KOG2650|consen 144 LIHIGRSYEGRPLKVLKISGGD--NRNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRDPAVTKLLDKLDWYILPVV 221 (418)
T ss_pred EEEcccccCCceEEEEEecCCC--CCCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccCHHHHHHHhcCcEEEEeee
Confidence 4689999999999999998863 25689999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc------ccCC---------CCCCCCCCCCCCCCCCC-C-----------CCCCCChHHHHHHHHHHHhc--c
Q 037202 81 NPDGYALK------RRGN---------ANNIDLNRDFPDQFFPM-N-----------NDEEACQPETRAIMSWVRQI--H 131 (393)
Q Consensus 81 NPDG~~~~------~R~N---------~~gvDLNRNfp~~w~~~-~-----------~~~~~sepEt~ai~~~~~~~--~ 131 (393)
|||||+++ |||| |.||||||||+.+|++. + ++.|+|||||+||.+|+.+. +
T Consensus 222 NPDGYeYS~t~~R~WRKnRs~~~~~~~C~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~~pfSEpEt~av~~fi~~~~~~ 301 (418)
T KOG2650|consen 222 NPDGYEYSRTTDRLWRKNRSPNGCASRCIGVDLNRNFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAVRDFITSFENN 301 (418)
T ss_pred cCCcceeeecccccccccCCCCCCCCeeeCCCCCCCccCcCCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhcCcc
Confidence 99999998 7876 47999999999999862 1 34899999999999999986 6
Q ss_pred eeEEEecCCCcee--cccCCCC--CCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccc-cCCce
Q 037202 132 FTASASLHGVISL--IQRYYYG--CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYI-YGGCF 206 (393)
Q Consensus 132 ~~~~idlHsg~~~--~p~~y~~--~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~-~~~~~ 206 (393)
+.++|+||+|+++ +||+|.. .+|.+.++++|+..++++... .|+.|..|.+ +...|+++|++.||+|. .+.++
T Consensus 302 i~~yislHSYsQ~llyPyg~~~~~~~~~~dl~~va~~a~~ai~~~-~gt~Y~~G~~-~~~~y~asG~S~Dway~~~gi~~ 379 (418)
T KOG2650|consen 302 IKAYISLHSYSQLLLYPYGYTNDLPEDYEDLQEVARAAADALKSV-YGTKYTVGSS-ADTLYPASGGSDDWAYDVLGIPY 379 (418)
T ss_pred eEEEEEecccceeEEecccccCCCCCCHHHHHHHHHHHHHHHHHH-hCCEEEeccc-cceeeccCCchHHHhhhccCCCE
Confidence 8999999999976 7888863 357788899999998888665 5889999965 57899999999999997 88999
Q ss_pred EEEEEecC----CCCCCCCChHHHHHHHHHHHHHHHH
Q 037202 207 ELTLEISD----DKWPSAEELPTIWEYNKMSMLNLVA 239 (393)
Q Consensus 207 ~~T~El~~----~~~p~~~~i~~~~~~~~~sll~l~~ 239 (393)
+||+||++ ++.+|+++|.+..+|.+.++..+++
T Consensus 380 ~ft~ELrd~g~~GF~LP~~~I~pt~~Et~~~i~~i~~ 416 (418)
T KOG2650|consen 380 AFTFELRDTGRYGFLLPASQIIPTAKETWAGIKAIAE 416 (418)
T ss_pred EEEEEeccCCCCCccCChHHhhhhHHHHHHHHHHHHh
Confidence 99999996 3679999999999999999888775
No 20
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=100.00 E-value=1.5e-47 Score=370.01 Aligned_cols=233 Identities=25% Similarity=0.353 Sum_probs=201.4
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+++||+|+|||+|++++|++++ ...||.|+++|++||+|++|++++++++++|+.++. +.++.||++++|+|||++
T Consensus 24 ~~~iG~S~egr~i~~l~i~~~~--~~~k~~v~i~~~~Hg~E~~g~~~~~~~~~~L~~~~~--~~~~~ll~~~~i~iiP~~ 99 (294)
T cd03860 24 VETIGRSYEGRPIKGVKISNGG--RSNKPAIFIDAGIHAREWISPATALYIINQLVESYD--PEVTDLLDNYDWYILPVA 99 (294)
T ss_pred EEeeeeCCCCCeEEEEEEecCC--CCCCcEEEEECCcCcCccccHHHHHHHHHHHHHccC--HHHHHHHHcCeEEEEeee
Confidence 4689999999999999999875 356899999999999999999999999999998753 778999999999999999
Q ss_pred Cccccccc------ccCC--------CCCCCCCCCCCCCCCCCC-----------CCCCCChHHHHHHHHHHHhc--cee
Q 037202 81 NPDGYALK------RRGN--------ANNIDLNRDFPDQFFPMN-----------NDEEACQPETRAIMSWVRQI--HFT 133 (393)
Q Consensus 81 NPDG~~~~------~R~N--------~~gvDLNRNfp~~w~~~~-----------~~~~~sepEt~ai~~~~~~~--~~~ 133 (393)
||||+++. ||+| +.|||||||||..|.... ++.|+|||||+|+++++.++ +++
T Consensus 100 NPDG~~~~~~~~~~wrknr~~~~~~~~~GvDLNRnf~~~w~~~~~~~~p~~~~y~G~~~~sepEt~al~~~~~~~~~~~~ 179 (294)
T cd03860 100 NPDGYEYTHTTDRLWRKNRSPNSGGGCVGVDLNRNFDYHWGGGGASSDPCSETYAGPSAFSEPETRAVRDFLLSLRGRIK 179 (294)
T ss_pred cCCchhhhccccchhcccCCCCCCCCceeeccCCCCCCCCccCCCCCCCCCCCccCCCCCchHHHHHHHHHHHhccccEE
Confidence 99999975 6655 579999999999997421 34689999999999999999 899
Q ss_pred EEEecCCCcee--cccCCC--CCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCC-ceEE
Q 037202 134 ASASLHGVISL--IQRYYY--GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGG-CFEL 208 (393)
Q Consensus 134 ~~idlHsg~~~--~p~~y~--~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~-~~~~ 208 (393)
+++|+|+++.+ +||.+. ..||.+.++.+|..++++.... .+..|..|.+ .+.||++.|++.||+|...+ ++++
T Consensus 180 ~~ld~Hs~~~~i~~P~~~~~~~~~d~~~~~~la~~~~~~~~~~-~g~~Y~~g~~-~~~~y~~~G~~~Dw~y~~~~~~~~~ 257 (294)
T cd03860 180 AYLSLHSYGQLILYPWGYTSELPPNYEDLREVAKAAADAIRAV-YGTRYTVGSS-AETLYPASGGSDDWAYGVAGIPYSY 257 (294)
T ss_pred EEEEeccCCceEEcCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-cCCCCccccc-cCccccCCCchhhhhhccCCCcEEE
Confidence 99999998865 677664 3568899999999988876543 3567887766 36799999999999998775 5899
Q ss_pred EEEecC----CCCCCCCChHHHHHHHHHHHHHHHH
Q 037202 209 TLEISD----DKWPSAEELPTIWEYNKMSMLNLVA 239 (393)
Q Consensus 209 T~El~~----~~~p~~~~i~~~~~~~~~sll~l~~ 239 (393)
|+||++ +++||+++|.++.+|++.+++.++.
T Consensus 258 t~El~~~~~~gf~~p~~~i~~~~~e~~~~~~~~~~ 292 (294)
T cd03860 258 TLELRDTGRYGFLLPASQIIPTAEETFAGIKAMAD 292 (294)
T ss_pred EEEecCCCCCCCcCChHHchhHHHHHHHHHHHHHh
Confidence 999997 4689999999999999999998875
No 21
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=6.3e-47 Score=365.52 Aligned_cols=225 Identities=20% Similarity=0.206 Sum_probs=190.7
Q ss_pred eeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhcc------------CChHHHHhhcC
Q 037202 4 IGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHV------------KDSLARLIVEN 71 (393)
Q Consensus 4 iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~------------~d~~~~~ll~~ 71 (393)
=++|+|||+|++++||++.+ ..||.|+|+|++||+||++++++++|+++|+.+|. +|+.++++|+
T Consensus 6 ~~~S~EgR~I~~l~I~~~~~--~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~lL~- 82 (332)
T cd06228 6 PHKTYEGRTPHGAKIGAGTL--TSRYGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKAILD- 82 (332)
T ss_pred CCCCCCCCeeEEEEEeCCCC--CCCCEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHHHHh-
Confidence 37999999999999998642 46899999999999999999999999999999874 4788999999
Q ss_pred eEEEEEeccCccccccc------ccCC-----------CCCCCCCCCCCCCCCC------------CC---------CCC
Q 037202 72 MHLHILPSMNPDGYALK------RRGN-----------ANNIDLNRDFPDQFFP------------MN---------NDE 113 (393)
Q Consensus 72 ~~i~ivP~~NPDG~~~~------~R~N-----------~~gvDLNRNfp~~w~~------------~~---------~~~ 113 (393)
++|+|||++|||||+++ |||| |.||||||||+..|.. .+ +..
T Consensus 83 ~~i~IvP~vNPDGy~~s~~~~r~WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcse~Y~G~~ 162 (332)
T cd06228 83 AGIVVFPLVNPDGRAHDQTANSCWRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPASETFHGTA 162 (332)
T ss_pred CeEEEEEeecCcchhheeccchhhhccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCccccCCCC
Confidence 99999999999999986 7876 4599999999999962 11 348
Q ss_pred CCChHHHHHHHHHHHhcc-eeEEEecCCCcee--cccCCCC----------------------------------CCCHH
Q 037202 114 EACQPETRAIMSWVRQIH-FTASASLHGVISL--IQRYYYG----------------------------------CPDDE 156 (393)
Q Consensus 114 ~~sepEt~ai~~~~~~~~-~~~~idlHsg~~~--~p~~y~~----------------------------------~pd~~ 156 (393)
|+|||||+||++++.+.+ +.++||+|+++++ +||+|.. .+|.+
T Consensus 163 pfSEPET~av~~~~~~~~~~~~yls~HSygq~il~P~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (332)
T cd06228 163 AFSEPETRNVVWVMDTFKNIRWFVDLHSYGGDVLYSWGDDENQSTNPAMNFMNPAYDGKRGIVAAPDTRYGEYIDSDDWD 242 (332)
T ss_pred CCccHHHHHHHHHHhccCCeEEEEEeccCCceEEecccCCccccccccccccccccccccccccccccccccccCCCCHH
Confidence 999999999999999984 9999999999865 7887752 23567
Q ss_pred HHHHHHHHHHHHhccccCCCccccceeccceeEecCCCcccccccc-------CCceEEEEEecC-------CCCCCCCC
Q 037202 157 AFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIY-------GGCFELTLEISD-------DKWPSAEE 222 (393)
Q Consensus 157 ~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~-------~~~~~~T~El~~-------~~~p~~~~ 222 (393)
.+..+|..++.++... .+..|..|.+ ..+|+++|++.||+|.. ..++++|+||++ +++||+++
T Consensus 243 ~l~~~a~~~~~ai~~~-~g~~Y~~g~~--~~lY~~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~~~~~~~~gF~~p~~~ 319 (332)
T cd06228 243 AAVNLAARMGLAMAAA-RGRIYTVSQS--VGLYPTSGASDDYAFSRHFADAVKRKVFSYTIEFGETNSEAECPFYPTYSE 319 (332)
T ss_pred HHHHHHHHHHHHHHHH-hCCCceeCCc--ccccCCCCChhhhhhhccccccccCceEEEEEEeCCCCCCCCcCCCCCHHH
Confidence 7888888777766443 3778888865 35899999999999964 468999999986 46899999
Q ss_pred hHHHHHHHHHHH
Q 037202 223 LPTIWEYNKMSM 234 (393)
Q Consensus 223 i~~~~~~~~~sl 234 (393)
|.++.+|.+.++
T Consensus 320 i~~~~~E~~~g~ 331 (332)
T cd06228 320 YNQIIKEVAAGL 331 (332)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 22
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=2.7e-46 Score=355.13 Aligned_cols=210 Identities=21% Similarity=0.212 Sum_probs=178.9
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccC----ChHHHHhhcCeEEEE
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVK----DSLARLIVENMHLHI 76 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~----d~~~~~ll~~~~i~i 76 (393)
+.+||+|+|||+|++++|+...+..+.||.++++||+||+||+|++++++|+++|+.+|.. |+.++++|++++|+|
T Consensus 25 ~~~ig~S~egr~i~~i~~~~~~~~~~~k~~i~i~agiHarE~i~~~~~l~li~~L~~~~~~~~~~~~~~~~lL~~~~i~i 104 (272)
T cd06227 25 LGELIESVKVRNFSSITLNPNGDPSKKKVKALLLFGEHARELISPETGLHLLSNLCGELAETFDWGDLLKNILDNFDLKI 104 (272)
T ss_pred EeeeeeccCCceeeEEEecCCCCCCCCCCEEEEECCccCCchhhHHHHHHHHHHHHHhcccccchhHHHHHHHhcCcEEE
Confidence 4689999999999999999865433469999999999999999999999999999998864 378999999999999
Q ss_pred EeccCcccccc------cccCCCCCCCCCCCCCCCCCCCC---------CCCCCChHHHHHHHHHHHhcceeEEEecCCC
Q 037202 77 LPSMNPDGYAL------KRRGNANNIDLNRDFPDQFFPMN---------NDEEACQPETRAIMSWVRQIHFTASASLHGV 141 (393)
Q Consensus 77 vP~~NPDG~~~------~~R~N~~gvDLNRNfp~~w~~~~---------~~~~~sepEt~ai~~~~~~~~~~~~idlHsg 141 (393)
||++|||||++ .||+|++|||||||||..|.... ++.|+|||||+||++|+.++++++++|+|++
T Consensus 105 vP~~NPDG~~~~~~~~~~wR~N~~GVDLNRNf~~~w~~~~~~~~~~~y~G~~~~sEpEt~av~~~~~~~~~~~~i~~Hs~ 184 (272)
T cd06227 105 IPNENPDGRKKVESGNYCLRENENGVDLNRNYGADWGFKEDDYEDEEYSGPAPFSEPETRVLRDLLTSFSPDVFLSVHSG 184 (272)
T ss_pred EeccCCchheeEeccCcccccCCccccccccCCcccccCCCCccccccCCCCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 99999999998 49999999999999999997432 3479999999999999999999999999999
Q ss_pred cee--cccCCCC--C-CCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCC-ceEEEEEecCC
Q 037202 142 ISL--IQRYYYG--C-PDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGG-CFELTLEISDD 215 (393)
Q Consensus 142 ~~~--~p~~y~~--~-pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~-~~~~T~El~~~ 215 (393)
+++ +||.|+. . |+......++...+.. .+..|+.|.+.....|+++|++.||+|...+ ++++|+||+..
T Consensus 185 ~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~y~~G~~~~~~~Y~a~G~s~Dway~~~gip~s~t~EL~~~ 259 (272)
T cd06227 185 TLALFTPYAYKKEQPEPNLAEDMRILLLISNK-----HCPRCQVGSAGKLVGYLAHGTSMDYMYDVLKVPYSFTFEIYGD 259 (272)
T ss_pred CCEEEecCCCCCCCCCCCHHHHHHHHHHHHHH-----hCCCCceecCccceeecCCCCHHHHHhhcCCCcEEEEEEccCC
Confidence 865 6887753 2 4666666666666552 3678998877655569999999999997656 57999999953
No 23
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=100.00 E-value=9.6e-47 Score=362.14 Aligned_cols=232 Identities=31% Similarity=0.539 Sum_probs=195.4
Q ss_pred CeEeeeeCCCceEEEEEEeCCC-CCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKP-GVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~-~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
+.+||+|.+||+|++++|+++. .....||.|+|+|++||+|++|++++++|+++|+.+| .|+.++.||++++|+|||+
T Consensus 18 ~~~iG~S~~Gr~i~~~~i~~~~~~~~~~k~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~-~~~~~~~ll~~~~i~iiP~ 96 (279)
T PF00246_consen 18 LESIGKSYEGRPIYALTIGSNSNGSDPGKPTVLIIAGIHGNEWIGSEALLYLIEELLSGY-DDPEVKELLDNVVIYIIPM 96 (279)
T ss_dssp EEEEEE-TTS-EEEEEEESSSTTTTSTTSEEEEEEE-SSTT-THHHHHHHHHHHHHHHHT-TSHHHHHHHHHEEEEEES-
T ss_pred EEEeeECCCCCeEEEEEeecccccccccccceEEEecccccccCchHHHHHHHHHhhccc-cchhhhhhcccceEEEEee
Confidence 4689999999999999999863 2235799999999999999999999999999999988 8999999999999999999
Q ss_pred cCcccccccc---------cCCCCCCCCCCCCCCCCCCC-----------CCCCCCChHHHHHHHHHHHhcceeEEEecC
Q 037202 80 MNPDGYALKR---------RGNANNIDLNRDFPDQFFPM-----------NNDEEACQPETRAIMSWVRQIHFTASASLH 139 (393)
Q Consensus 80 ~NPDG~~~~~---------R~N~~gvDLNRNfp~~w~~~-----------~~~~~~sepEt~ai~~~~~~~~~~~~idlH 139 (393)
+||||+++.+ |.|++|||||||||..|... .+..+++||||+|+++++++.++++++|+|
T Consensus 97 ~NPDG~~~~~~~~~~w~~~R~n~~GvDlNRnf~~~w~~~~~~~~~~~~~y~g~~~~sepEt~al~~~~~~~~~~~~id~H 176 (279)
T PF00246_consen 97 VNPDGYEYGTSGDRGWRKNRSNANGVDLNRNFPYQWNEEGSSSNPCSETYRGPAPFSEPETRALRNLIQDWNPDFFIDFH 176 (279)
T ss_dssp SSHHHHHHHHHT-TTCCSTSSBTTS--GGGSSSSSTTSSSSBSSTTSTTB--SSTTTSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ecccceeeeeecccccccccccccccccccccCcccccccccCCCCCcccCCCcchhhhHHHHHHHHHhhcceeEEEecc
Confidence 9999999986 99999999999999999532 133688999999999999999999999999
Q ss_pred CCcee--cccCCC---CCCCHHHHHHHHHHHHHHhccccCCCcc-ccceeccceeEecCCCccccccccCCc-eEEEEEe
Q 037202 140 GVISL--IQRYYY---GCPDDEAFQFLASVYSRSHYNMSLSTEF-QGGIINGASWYPIYGGMQDWNYIYGGC-FELTLEI 212 (393)
Q Consensus 140 sg~~~--~p~~y~---~~pd~~~~~~la~~~~~~~~~m~~~~~y-~~g~~~~~~~y~~~G~~~Dw~y~~~~~-~~~T~El 212 (393)
+++.. +||.+. ..++.+.++.++..++.+...+..+..| ..|..+++.||++.|++.||+|...++ +++|+|+
T Consensus 177 ~~~~~~~~p~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~G~~~D~~~~~~g~~~~~t~E~ 256 (279)
T PF00246_consen 177 SGGNAILYPYGYSYDEPPPDADELRSLARAFAEALGSMSRGQNYDSYGITNGDNWYPASGSSDDYAYYHHGIPFSFTLEL 256 (279)
T ss_dssp ESSSEEEESESSSSTSSTTTHHHHHHHHHHHHHHHHCHTTTTTBSEEEEEHHHHTTTTSSSHHHHHHHHTTSSEEEEEEE
T ss_pred ccccceeeecccccccCCchhhhhhHHHHHHHHHhhhccccccccccCCcccccccccccccceeehhhcCCcEEEEEEe
Confidence 98753 677663 3567888999999999988776554457 667677777999999999999988888 9999999
Q ss_pred cCCC--CCCCCChHHHHHHHHHH
Q 037202 213 SDDK--WPSAEELPTIWEYNKMS 233 (393)
Q Consensus 213 ~~~~--~p~~~~i~~~~~~~~~s 233 (393)
+|++ +||+++|.++|++++++
T Consensus 257 ~~~~~f~p~~~~i~~~~~~~~~~ 279 (279)
T PF00246_consen 257 GCCGNFYPPASEIEPIWEENWEA 279 (279)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHH-
T ss_pred CCCCCccCCHHHHHHHHHHHhhC
Confidence 9987 89999999999998864
No 24
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=100.00 E-value=2e-45 Score=348.06 Aligned_cols=209 Identities=23% Similarity=0.313 Sum_probs=175.6
Q ss_pred eCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCC-----hHHHHhhcCeEEEEEeccC
Q 037202 7 SVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD-----SLARLIVENMHLHILPSMN 81 (393)
Q Consensus 7 S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d-----~~~~~ll~~~~i~ivP~~N 81 (393)
|+|||+|++++||+++ |.|+++|++||+||+|++++++++++|+.+|..+ ..+++||++++|+|||++|
T Consensus 1 S~eGR~I~~~~ig~~~------~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~ivP~~N 74 (255)
T cd06229 1 SVLGRDIYEVKLGNGP------KTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFVPMVN 74 (255)
T ss_pred CCCCceeeEEEEcCCC------ceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEEeCcc
Confidence 7999999999999863 8999999999999999999999999999988654 4579999999999999999
Q ss_pred ccccccc--------------------------ccCCCCCCCCCCCCCCCCCCCC------------CCCCCChHHHHHH
Q 037202 82 PDGYALK--------------------------RRGNANNIDLNRDFPDQFFPMN------------NDEEACQPETRAI 123 (393)
Q Consensus 82 PDG~~~~--------------------------~R~N~~gvDLNRNfp~~w~~~~------------~~~~~sepEt~ai 123 (393)
||||++. ||.|+.|||||||||..|.... ++.|+|||||+|+
T Consensus 75 PDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s~~p~~~~y~G~~p~SEpEtral 154 (255)
T cd06229 75 PDGVEIVQNGPYAIRNYYLELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGPKAPAPRNYKGEQPLSEPETIAL 154 (255)
T ss_pred CCchheeeecccccccchhhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCCCCCCCCccCcCCCCCCCchhHHHH
Confidence 9999975 2678999999999999996421 2378999999999
Q ss_pred HHHHHhcceeEEEecCCCceecccCCCCCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccC
Q 037202 124 MSWVRQIHFTASASLHGVISLIQRYYYGCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYG 203 (393)
Q Consensus 124 ~~~~~~~~~~~~idlHsg~~~~p~~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~ 203 (393)
++++.++++++++|+|+++.+..|.|.... ....+.+++.++.. ..|..+...+ |+++|++.||+|...
T Consensus 155 ~~~~~~~~~~~~i~~Hs~g~~i~~~~~~~~-~~~~~~~~~~~~~~-------~gy~~~~~~~---~~~~G~~~Dw~~~~~ 223 (255)
T cd06229 155 AELTRENRFRAVLAYHSQGEEIYWGYGGLE-PPESQKMAELLAEV-------SGYELVDSES---KRSYGGYKDWFIQKF 223 (255)
T ss_pred HHHHHhCCCeEEEEecCCCCeEEecCCCCC-chHHHHHHHHHhhc-------cCCccccccc---cCCCCCHHHHHHhhc
Confidence 999999999999999999876555554322 24456666666543 2466665432 899999999999988
Q ss_pred CceEEEEEecCCCC-CCCCChHHHHHHHHH
Q 037202 204 GCFELTLEISDDKW-PSAEELPTIWEYNKM 232 (393)
Q Consensus 204 ~~~~~T~El~~~~~-p~~~~i~~~~~~~~~ 232 (393)
+++++|+||+..+- +|.+|+.++|++|+.
T Consensus 224 gi~s~t~El~~~~~~~~~~~~~~~~~~~~~ 253 (255)
T cd06229 224 RRPGFTIEIGRGTNPLPLSQFKTIYKENKG 253 (255)
T ss_pred CCeEEEEEeCCCCCCCChHHhHHHHHhhcC
Confidence 99999999998654 489999999999975
No 25
>smart00631 Zn_pept Zn_pept.
Probab=100.00 E-value=1.8e-44 Score=345.85 Aligned_cols=216 Identities=33% Similarity=0.540 Sum_probs=179.2
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+.+||+|.+||+|++++|++++. +.||.|+|+|++||+|++|++++++++++|+.+|.+|+.++.+|++++|+|||++
T Consensus 24 ~~~iG~S~~Gr~i~~~~i~~~~~--~~k~~v~i~a~~Hg~E~~g~~~~~~~i~~L~~~~~~~~~~~~ll~~~~i~ivP~~ 101 (277)
T smart00631 24 LVSIGKSVEGRPIWVLKISDGGS--HNKPAIFIDAGIHAREWIGPATALYLINQLLENYGRDPRITKLLDKTDIYIVPVL 101 (277)
T ss_pred EEeceecCCCCceEEEEEeCCCC--CCCcEEEEECCccccccccHHHHHHHHHHHHHhcccCHHHHHHHHcCcEEEEEee
Confidence 46899999999999999998752 4589999999999999999999999999999999889999999999999999999
Q ss_pred Cccccccc------ccC------CCCCCCCCCCCCCCCCCC--------CCCCCCChHHHHHHHHHHHhc-ceeEEEecC
Q 037202 81 NPDGYALK------RRG------NANNIDLNRDFPDQFFPM--------NNDEEACQPETRAIMSWVRQI-HFTASASLH 139 (393)
Q Consensus 81 NPDG~~~~------~R~------N~~gvDLNRNfp~~w~~~--------~~~~~~sepEt~ai~~~~~~~-~~~~~idlH 139 (393)
||||+++. ||+ |++|||||||||..|.+. .++.|+|||||+||++++.++ ++++++|+|
T Consensus 102 NPDG~~~~~~~~~~wr~~r~~~~~~~GvDLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt~ai~~~~~~~~~~~~~id~H 181 (277)
T smart00631 102 NPDGYEYTHTGDRLWRKNRSPNSNCRGVDLNRNFPFHWGKTGNPCSETYAGPSPFSEPETKAVRDFIRSNRRFVLYIDLH 181 (277)
T ss_pred cCchhhheecccccccCCCCCCCCCcCcccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCeeEEEEec
Confidence 99999975 466 688999999999999762 134679999999999999999 999999999
Q ss_pred CCcee--cccCCCC--CC-CH----HHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCC-ceEEE
Q 037202 140 GVISL--IQRYYYG--CP-DD----EAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGG-CFELT 209 (393)
Q Consensus 140 sg~~~--~p~~y~~--~p-d~----~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~-~~~~T 209 (393)
+++.. +||.+.. .| +. +.++.+++.++..+ +..|..|+..++ +|++.|++.||+|...+ ++++|
T Consensus 182 s~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~y~~g~~~~~-~y~~~G~~~D~~~~~~gi~~~~t 255 (277)
T smart00631 182 SYSQLILYPYGYTKNDLPPNVDDLDAVAKALAKALASVH-----GTRYTYGISNGA-IYPASGGSDDWAYGTLGIPFSFT 255 (277)
T ss_pred cCCcEEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhc-----CCccccccccCc-ccCCCCchhhhhhccCCCcEEEE
Confidence 98755 6665543 22 32 44556666655543 446888877664 68889999999998777 79999
Q ss_pred EEecCCC----CCCCCChH
Q 037202 210 LEISDDK----WPSAEELP 224 (393)
Q Consensus 210 ~El~~~~----~p~~~~i~ 224 (393)
+||++++ .+|.+++.
T Consensus 256 ~El~~~~~~~~~~p~~~~~ 274 (277)
T smart00631 256 LELRDDGRYGFLLPPSQII 274 (277)
T ss_pred EEecCCCCCCccCCHHHcc
Confidence 9999974 34555544
No 26
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=7.7e-44 Score=349.51 Aligned_cols=219 Identities=24% Similarity=0.367 Sum_probs=176.4
Q ss_pred CeEeeeeCCCceEEEEEEeCCCC-CCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPG-VEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~-~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
+++||+|+|||+|++++|++++. ....||.|+|+|++||+||+|++++++++++|+.+|.+|+.++++|++++|+|||+
T Consensus 27 l~~IG~S~EGR~I~~l~Is~~~~~~~~~Kp~I~i~~giHarEwig~~~~l~li~~Ll~~y~~d~~i~~lLd~~~~~IvP~ 106 (360)
T cd06905 27 LESIGKSYEGRDIWLLTLTNQATGPDREKPAFWIDANIHATEVTGSAVALYVIQTLLNGYGSDPEVTRLLDGYTFYILPR 106 (360)
T ss_pred EEEeeecCCCCceEEEEecCCCCCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHHHHhccCCHHHHHHHhcCeEEEEee
Confidence 47899999999999999998642 23569999999999999999999999999999999989999999999999999999
Q ss_pred cCccccccc-------ccCCC-----------------------------------------------------------
Q 037202 80 MNPDGYALK-------RRGNA----------------------------------------------------------- 93 (393)
Q Consensus 80 ~NPDG~~~~-------~R~N~----------------------------------------------------------- 93 (393)
+|||||++. ||+|+
T Consensus 107 vNPDG~e~~~~~~~r~wRk~r~~~~~~~~~~g~~~~D~n~D~~~~~mr~~d~~g~w~~~~~~p~~m~~~~~~~~~g~~y~ 186 (360)
T cd06905 107 LNPDGAEQALTHPPYVRRSSRRPYPYPDRIDGLYPEDIDGDGLILQMRVKDPCGAWKVSERDPRIMVRREPDEFGGTYYR 186 (360)
T ss_pred eCCChheEEeeccccccccCCCCcccccccccccccccCccchhheeeccccccccccccccchhhccccccccCceeee
Confidence 999999965 45442
Q ss_pred ---------------------CCCCCCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHhc-ceeEEEecCCCcee--
Q 037202 94 ---------------------NNIDLNRDFPDQFFPM-----NNDEEACQPETRAIMSWVRQI-HFTASASLHGVISL-- 144 (393)
Q Consensus 94 ---------------------~gvDLNRNfp~~w~~~-----~~~~~~sepEt~ai~~~~~~~-~~~~~idlHsg~~~-- 144 (393)
.|||||||||++|.+. .++.|+|||||+||++|+.++ ++.+++++|+++++
T Consensus 187 ~~~eg~~~~~dg~~~~~~~~~~GvDlNRNf~~~W~~~~~~~y~G~~p~SEpEt~av~~~~~~~~~i~~~is~Hsyg~~il 266 (360)
T cd06905 187 LLPEGLIRNYDGYNIKIAPPLEGLDFNRNFPHDWRPEGEQYGAGPFPFSEPETRAVVEFWTDHPNINGFISYHTYSGVIL 266 (360)
T ss_pred ecccccccccccccccccccccCCCcccCcCCCCCCCCCcCCCCCCCCChHHHHHHHHHHhcCCCeEEEEEecCCcCeee
Confidence 3999999999999753 256899999999999999987 78999999999976
Q ss_pred cccCCCCC-----CCHHHHHHHHHHHHHHhc-c-ccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCC-
Q 037202 145 IQRYYYGC-----PDDEAFQFLASVYSRSHY-N-MSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDK- 216 (393)
Q Consensus 145 ~p~~y~~~-----pd~~~~~~la~~~~~~~~-~-m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~- 216 (393)
+||+|... +|.+.++.+|..++.... . ++....|..|.+ ++++|++.||+|...+++++|+||++.+
T Consensus 267 ~P~g~~~~~~~~~~~~~~~~~la~~~~~~~~y~~~~~~~~~~~~~~-----~~~~G~~~Dw~y~~~gi~s~t~EL~~~~~ 341 (360)
T cd06905 267 RPYSDKPDDQMPVDDLELYKALGEKGEELTGYPTVSVYHEFRYHPK-----EVTYGAFDDWAYDHLGIFAFTVELWDLPT 341 (360)
T ss_pred eCCCCCcCcCCChhhHHHHHHHHHHHHHhcCccccccccceecCCc-----ccccCChhhhhhhcCCeEEEEEEcCCCCc
Confidence 67777532 244567788877765211 0 111133433332 3789999999999888999999999864
Q ss_pred ---CCCCCChH
Q 037202 217 ---WPSAEELP 224 (393)
Q Consensus 217 ---~p~~~~i~ 224 (393)
.++..+++
T Consensus 342 ~~~~~~~~~~~ 352 (360)
T cd06905 342 EAGVKKYDFIQ 352 (360)
T ss_pred ccCCChHHhhh
Confidence 44444433
No 27
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=5.4e-40 Score=307.58 Aligned_cols=191 Identities=23% Similarity=0.274 Sum_probs=153.1
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+.+||+|+|||+|++++||++ +.||.|+++|++||+|++|+++++.|+++|+.+ ++.++.+|++++|+|||++
T Consensus 28 ~~~iG~S~eGR~i~~l~ig~~----~~k~~v~i~~~iH~~E~~g~~~~~~~~~~l~~~---~~~~~~ll~~~~i~ivP~~ 100 (244)
T cd06237 28 LELLGLSTQGRPLKALERGNP----DSKEWIVVISRQHPPEVTGALAMKAFIETLLSD---SELAKKFRAKYNVLLVPNM 100 (244)
T ss_pred EEEeeEcCCCCEEEEEEecCC----CCCceEEEEcCcCCCcHHHHHHHHHHHHHHHhC---CHHHHHHHHhCEEEEEEee
Confidence 468999999999999999876 347999999999999999999999999999862 4567899999999999999
Q ss_pred Cccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc-----ceeEEEecCCCcee--cccCCCCC
Q 037202 81 NPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI-----HFTASASLHGVISL--IQRYYYGC 152 (393)
Q Consensus 81 NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~-----~~~~~idlHsg~~~--~p~~y~~~ 152 (393)
||||+++. ||+|++||||||||+ +++||||+|+++++.+. ++++++|+|+++.. +|+.+...
T Consensus 101 NPDG~~~~~wR~N~~GvDLNRnw~----------~~sepEt~a~~~~~~~~~~~~~~~~~~id~Hs~~~~i~~~~~~~~~ 170 (244)
T cd06237 101 NPDGVDLGHWRHNANGIDLNRDWS----------NFNQPETRAIRDYLVRLVKEGGKIVFALDFHSTWHDVFYTMPEDYK 170 (244)
T ss_pred CcchhhcCCccCCCCCcCCCCCCC----------CCCCHHHHHHHHHHHHHhccCCCEEEEEEeccCCcceEecCCCCCC
Confidence 99999986 899999999999994 68999999999999864 89999999998865 44433211
Q ss_pred CC-HHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCC
Q 037202 153 PD-DEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDK 216 (393)
Q Consensus 153 pd-~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~ 216 (393)
+. .+....+...++. .| ..|..+.+. ..|+++|++.||++...++++||+|++++.
T Consensus 171 ~~~p~~~~~~~~~l~~---~~---~~Y~~~~~~--~~~~~~g~~~Dw~~~~~~~~~~T~E~g~~~ 227 (244)
T cd06237 171 LQFPGFVADWLKELDK---RI---LDYKVNNRS--GSSPDRGVSKQYFADEHGAHAITYEVGDNT 227 (244)
T ss_pred cccchHHHHHHHHhcC---cC---CCceecccc--CcccCCCcHHHHHHHhCCCcEEEEecCCCC
Confidence 11 1122222222211 11 457665432 346889999999999988999999999764
No 28
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=6.2e-38 Score=297.56 Aligned_cols=199 Identities=24% Similarity=0.372 Sum_probs=165.7
Q ss_pred CCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCccccccc
Q 037202 9 SGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALK 88 (393)
Q Consensus 9 egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~ 88 (393)
...+|++++||++. ..+|+|+++||+||+||+|++++++++++|+.+|..|+.++.++++++|+|||++||||+...
T Consensus 8 ~~~pi~~v~ig~~~---~~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG~~~~ 84 (273)
T cd03862 8 LRFPIYALELGSPD---PKAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVGMALK 84 (273)
T ss_pred CcceeEEEEecCCC---CCCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCHHHhc
Confidence 46789999998753 457999999999999999999999999999999988999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCC--------CC---------CC-CCCChHHHHHHHHHHHhc----ceeEEEecCCCc---e
Q 037202 89 RRGNANNIDLNRDFPDQFFP--------MN---------ND-EEACQPETRAIMSWVRQI----HFTASASLHGVI---S 143 (393)
Q Consensus 89 ~R~N~~gvDLNRNfp~~w~~--------~~---------~~-~~~sepEt~ai~~~~~~~----~~~~~idlHsg~---~ 143 (393)
+|.|++|||||||||..|.+ .. +. .+++||||+||++++++. ++++++|+|||. +
T Consensus 85 ~R~n~~GVDLNRNfp~~~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~~~~~~~~~~ld~HSg~G~~~ 164 (273)
T cd03862 85 TRSNGNGVDLMRNAPVDAEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVRELLFESPFSIALDCHSGFGLVD 164 (273)
T ss_pred ccCCCCCcccCCCCCCCccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcccCCeEEEEEECCCCCccC
Confidence 99999999999999998752 11 11 379999999999999985 889999999963 2
Q ss_pred --ecccCCCC--CCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCC-------ceEEEEEe
Q 037202 144 --LIQRYYYG--CPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGG-------CFELTLEI 212 (393)
Q Consensus 144 --~~p~~y~~--~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~-------~~~~T~El 212 (393)
++||+|.. .++.+....++..+..+. .+..|..|... ..|+++|++.||+|...+ .+++|+|+
T Consensus 165 ~i~~Pyg~~~~~~~~~~~~~~l~~~~~~~~----~~~~Y~~g~~s--~~Y~a~G~~~D~~y~~~~~~~~~~~~l~~TlE~ 238 (273)
T cd03862 165 RIWFPYAYTKEPIPHLAEIYALKELLERTY----PNHVYRFEPQS--RHYLTHGDLWDYLYDQHQKQQPNGRFLPLTLEM 238 (273)
T ss_pred EEEcCCcCCCCCCCCHHHHHHHHHHHHHhC----CCCceEECCcc--eeEECCCCHHHHHHhhcCcccccccceeEEEEe
Confidence 36888754 456778888888775543 23467765443 479999999999997533 47999999
Q ss_pred cCCC
Q 037202 213 SDDK 216 (393)
Q Consensus 213 ~~~~ 216 (393)
|...
T Consensus 239 Gt~~ 242 (273)
T cd03862 239 GSWL 242 (273)
T ss_pred ecch
Confidence 9763
No 29
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=1.3e-37 Score=293.51 Aligned_cols=201 Identities=22% Similarity=0.315 Sum_probs=163.9
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
+.+||+|+|||+|++++||++. ..||.|+|+|++||+|+.|..+++.|+++|+++ .|+.+++++++++|+|||++
T Consensus 31 ~~~iG~S~eGR~i~~l~I~~~~---~~k~~V~i~a~iH~~E~~g~~~~~~ll~~L~~~--~d~~~~~ll~~~~~~IvP~~ 105 (263)
T cd06234 31 LEVLGQTVQGRDIDLLTFGEPG---PGKKKLWIIARQHPGETMAEWFMEGLLERLLDP--DDAVARALLEKAVFYVVPNM 105 (263)
T ss_pred EEEEEEcCCCCeEEEEEEccCC---CCCCEEEEECCCCCCcHHHHHHHHHHHHHHhhc--CCHHHHHHHhcCEEEEEeee
Confidence 3689999999999999998742 468999999999999999999999999999974 48899999999999999999
Q ss_pred Cccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCceecccCCC----CCCCH
Q 037202 81 NPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISLIQRYYY----GCPDD 155 (393)
Q Consensus 81 NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~~p~~y~----~~pd~ 155 (393)
||||+++. +|.|+.|+||||||+. +.+++||||+++++++++.++++++|+|+++++ ||.|. ..|+.
T Consensus 106 NPDG~~~g~~R~n~~GvDLNRnw~~-------p~~~s~PEt~av~~~~~~~~~~~~ld~Hs~~~~-py~f~~g~~~~p~~ 177 (263)
T cd06234 106 NPDGSARGHLRTNAAGANLNREWAE-------PSAERSPEVFAVRQRMEETGVDFFLDVHGDEAL-PYNFIAGSEGVPGW 177 (263)
T ss_pred cchhhhhcCCccCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCCC-CccEeccCCCCCCc
Confidence 99999997 7999999999999974 357899999999999999999999999999876 66553 23543
Q ss_pred -HHHHHHHHHHHHHhccccCCCcccc--ceeccceeEecCCCccccccccCCceEEEEEecCCC
Q 037202 156 -EAFQFLASVYSRSHYNMSLSTEFQG--GIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDK 216 (393)
Q Consensus 156 -~~~~~la~~~~~~~~~m~~~~~y~~--g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~ 216 (393)
..++.+++.+..+..... ..|.. |-......++..|.+.+|.+...+|+++|+|++...
T Consensus 178 ~~~l~~l~~~~~~al~~~~--~~f~~~~~y~~~~~g~~~~~~a~~~~~~~~~~~s~TlEmpf~~ 239 (263)
T cd06234 178 TPRLAALEARFKAALLRAS--PDFQTEHGYPKDAPGQANLTIATNWVAHRFDCLSMTLEMPFKD 239 (263)
T ss_pred cHHHHHHHHHHHHHHHHhC--cccccccccCCCCCCchhHHHHHHHHHhhcCceEEEEEeecCC
Confidence 577788887777664432 22221 111111123345678899999999999999999765
No 30
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=100.00 E-value=4.8e-37 Score=291.79 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=161.0
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
|.+||+|.+||+|++++++.. ..||.|+|+|++||+||+|+++++.++++|+.+ ++.++.++++++|+|||++
T Consensus 30 l~~IG~s~egr~i~~~~~~~~----~~k~~i~i~a~iH~~E~~~~~~~~~li~~Ll~~---~~~~~~ll~~~~~~ivP~~ 102 (269)
T cd03856 30 LLTITSPPEGNDIKYEHLCSF----ANKKYIFLIARVHPGETNASWVMKGFLEFLLSD---NPTAQSLRESFVFKIVPML 102 (269)
T ss_pred EEEeccCCCCccccceeccCC----CCCcEEEEEcCcCCCchHHHHHHHHHHHHHHhC---CHHHHHHHhcCeEEEEeee
Confidence 468999999999999998764 458999999999999999999999999999874 5668999999999999999
Q ss_pred Cccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc-----ceeEEEecCCCc---eecccCCCC
Q 037202 81 NPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI-----HFTASASLHGVI---SLIQRYYYG 151 (393)
Q Consensus 81 NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~-----~~~~~idlHsg~---~~~p~~y~~ 151 (393)
||||++.. ||+|+.|+||||||+. +.++++||++++++++.++ ++++++|+|+++ +++.|++..
T Consensus 103 NPDG~~~g~~R~n~~G~DLNR~~~~-------p~~~~~pE~~~~~~~~~~~~~~~~~~~~~idlH~~~~~~~~f~yG~~~ 175 (269)
T cd03856 103 NPDGVIRGNYRCSLSGVDLNRQWQN-------PSPDLHPEIYLVKGLMLYLAAGKRGVLFYCDFHGHSRKKNVFMYGCSF 175 (269)
T ss_pred CCccccccCCcCCCCCCCcCCCCCC-------CCCCCCCCHHHHHHHHHHHHhccCCceEEEEecCCCccCceEeecCCC
Confidence 99999997 8999999999999974 4689999999999999987 899999999998 444455442
Q ss_pred --CCCHHHHHHHHHHHHHHhccc-cCCCccccceeccceeEecCCCccccccccCCc-eEEEEEecCCCC
Q 037202 152 --CPDDEAFQFLASVYSRSHYNM-SLSTEFQGGIINGASWYPIYGGMQDWNYIYGGC-FELTLEISDDKW 217 (393)
Q Consensus 152 --~pd~~~~~~la~~~~~~~~~m-~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~-~~~T~El~~~~~ 217 (393)
.++....+.++...+...... ..+..|..+... ..|+.+|++.||+|...++ +++|+|++.++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~gtsr~~~~~~~~i~~syTlE~~~~g~ 243 (269)
T cd03856 176 KDEVWDQGYRIIPKMLSQNAPLFCMFGCSFKVEKSK--ASDPDRGTGRVVVAKQIKVQHSYTMEVTFNGN 243 (269)
T ss_pred chhhhhhHHHHHHHHHHhhChhhhhcCCCcCCCcCC--cccCCCChHHHHHHHhcCCcEEEEEecCCCCc
Confidence 223333344444432221111 125577766543 3688999999999976565 999999998753
No 31
>PRK10602 murein peptide amidase A; Provisional
Probab=100.00 E-value=1.2e-36 Score=282.33 Aligned_cols=195 Identities=24% Similarity=0.315 Sum_probs=154.8
Q ss_pred eEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccC
Q 037202 2 FSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMN 81 (393)
Q Consensus 2 ~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~N 81 (393)
.+||+|+|||+|++++++.+ +++.++++||+||+||+|++++++++++|..+ +.+++|||++|
T Consensus 18 ~~iG~S~egrpi~~l~~~~~-----~~~~vli~agiHG~E~~g~~~~~~l~~~l~~~------------~~~~~iipvvN 80 (237)
T PRK10602 18 EHYGRSLLGAPLLWFPAPAA-----SRESGLILAGTHGDETASVVTLSCALRTLTPS------------LRRHHVVLAVN 80 (237)
T ss_pred cccccccCCCceEEEEcCCC-----CCceEEEEecCCCCcHHHHHHHHHHHHhhhhh------------ccceEEEEEEC
Confidence 57999999999999999764 36889999999999999999999999998642 23578999999
Q ss_pred cccccccccCCCCCCCCCCCCCC-CCCCC------------------CCCCCCChHHHHHHHHHHHhcceeEEEecCCCc
Q 037202 82 PDGYALKRRGNANNIDLNRDFPD-QFFPM------------------NNDEEACQPETRAIMSWVRQIHFTASASLHGVI 142 (393)
Q Consensus 82 PDG~~~~~R~N~~gvDLNRNfp~-~w~~~------------------~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~ 142 (393)
||||++..|.|++|+|||||||. .|... .++.|+|||||+++++++.++++.+++++|+
T Consensus 81 PDG~~~~~R~n~~GvDLNRnFp~~~w~~~~~~~~w~~~~~~~~~~~y~G~~p~SepEt~al~~~i~~~~~~~~~s~Hs-- 158 (237)
T PRK10602 81 PDGCQLGLRANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRLQPAWVVSFHD-- 158 (237)
T ss_pred ccccccccccCCCCCchhhcCCCcccccccccccccCCCCccchhhccCCCCCCCHHHHHHHHHHHHcCCCEEEEeec--
Confidence 99999999999999999999997 55321 1357899999999999999999999999999
Q ss_pred eecccCCCCCCC-HHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCC
Q 037202 143 SLIQRYYYGCPD-DEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAE 221 (393)
Q Consensus 143 ~~~p~~y~~~pd-~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~ 221 (393)
|+.+...|+ .++.+.+|+++.. +.. ....|+..|++.||++ ..+++.+|+|+++ .+..+
T Consensus 159 ---P~~~~~~~~~~~~~~~la~af~~-------------~~~-~~~~y~~~Gs~~~~a~-~~giP~it~El~~--~~~~~ 218 (237)
T PRK10602 159 ---PLACIEDPRHSELGEWLAQAFEL-------------PLV-TSVGYETPGSFGSWCA-DLNLHCITAELPP--ISADE 218 (237)
T ss_pred ---cccccCCccchHHHHHHHHHhCC-------------CeE-eecCCCCCCcHHHHHH-HcCCcEEEEecCC--cCcHH
Confidence 444433232 2334444444321 111 1356888999999998 4688889999996 78888
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 037202 222 ELPTIWEYNKMSMLNLVA 239 (393)
Q Consensus 222 ~i~~~~~~~~~sll~l~~ 239 (393)
+++.+|.+ +++++.
T Consensus 219 ~v~~~~~~----~~~~l~ 232 (237)
T PRK10602 219 ASEKYLFA----MANLLR 232 (237)
T ss_pred HHHHHHHH----HHHHHh
Confidence 88888887 555554
No 32
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=100.00 E-value=1.7e-35 Score=269.65 Aligned_cols=190 Identities=33% Similarity=0.543 Sum_probs=162.7
Q ss_pred EEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccc-cccCCCCCCCCCCCCCCCCCCC
Q 037202 31 FKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYAL-KRRGNANNIDLNRDFPDQFFPM 109 (393)
Q Consensus 31 v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~-~~R~N~~gvDLNRNfp~~w~~~ 109 (393)
|+++|++||+|++|++++++++++|+.++..+ +.++++.+|+|+|++||||++. .||+|++|+|||||||..|..
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~---~~l~~~~~i~iiP~~NPdG~~~~~~R~n~~g~DlNR~f~~~~~~- 76 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRD---TKLLENGRLLVVPVLNPDGYEAVNWRKNANGVDLNRNFPGLWGK- 76 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcch---HHHHhCCeEEEEeCcccccceeeeEEeCCCCcCccCCCCCcccC-
Confidence 58999999999999999999999999876433 7899999999999999999999 899999999999999998754
Q ss_pred CCCCCCChHHHHHHHHHHHhcceeEEEecCCCce--ecccCCCCC--CCHHHHHHHHHHHHHHhccccCCCccccceecc
Q 037202 110 NNDEEACQPETRAIMSWVRQIHFTASASLHGVIS--LIQRYYYGC--PDDEAFQFLASVYSRSHYNMSLSTEFQGGIING 185 (393)
Q Consensus 110 ~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~--~~p~~y~~~--pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~ 185 (393)
.++++||++++++++.++++++++|+|+++. ++|+.+... |+....+.+|..++..+. +..+. ....
T Consensus 77 ---~~~~~~e~~~~~~~~~~~~~~~~idlH~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~--~~~~ 147 (196)
T cd00596 77 ---GPLSEPETRALAELIQQRKVDLYIDLHSGSLGVLYPYSHSDTPPPDAEIPKALAQLLADAAR----GSKYG--VGFG 147 (196)
T ss_pred ---CCCCcHHHHHHHHHHHhCCceEEEEEecCCceEEecCCCCCCCCCCHHHHHHHHHHHHHhcc----CCCCc--eeec
Confidence 5789999999999999999999999999864 366666543 577889999999887542 11222 2223
Q ss_pred ceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHH
Q 037202 186 ASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMS 233 (393)
Q Consensus 186 ~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~s 233 (393)
..+|+..|++.||+|...+++++|+|+++++.|+.+++...|++++..
T Consensus 148 ~~~~~~~g~~~d~~~~~~~~~~~tiE~g~~~~~~~~~~~~~~~~~~~~ 195 (196)
T cd00596 148 AKWYETGGGFDDWAYGNHGCPSFTIELGGQGYPPEEELPSRGEENKEA 195 (196)
T ss_pred ceEEEcCCchhhhhhhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999888999999999999999999999999998764
No 33
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=2.4e-34 Score=270.83 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=155.2
Q ss_pred CeEeeeeCCCceEEEEEEeCCCC--CCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPG--VEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~--~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP 78 (393)
+.+||+|+|||+|++++|+++++ ....||.|+|+|++|++||+|+.++++|+++|+.+ |+.++.|+++++|+|||
T Consensus 14 ~~~iG~S~eGR~i~~l~It~~~~~~~~~~k~~I~i~ariHp~E~~~s~~~~~li~~L~~~---~~~~~~L~~~~~~~IvP 90 (261)
T cd06908 14 REQLGQSVQKRRLDLLTIDSPDNLREDSEKKVIFITARVHPGESPSSYVCQGLIDFLVSN---HPIAKVLREHLVFKIVP 90 (261)
T ss_pred EEEeEEcCCCCeeEEEEEcCCCccccCCCCcEEEEECCcCCCChHHHHHHHHHHHHHhhC---CHHHHHHHHhCcEEEEe
Confidence 36899999999999999998653 22468999999999999999999999999999974 89999999999999999
Q ss_pred ccCccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc------ceeEEEecCCCcee---cccC
Q 037202 79 SMNPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI------HFTASASLHGVISL---IQRY 148 (393)
Q Consensus 79 ~~NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~------~~~~~idlHsg~~~---~p~~ 148 (393)
++||||++++ +|.|+.|+||||||+. +.++++||++++++++++. ++++++|+|+++.. ++|+
T Consensus 91 ~~NPDGv~~gn~R~~~~G~DLNR~w~~-------p~~~~~PEv~av~~~i~~~~~~~~~~i~~~lD~H~hs~~~~~F~yG 163 (261)
T cd06908 91 MLNPDGVFLGNYRCSLMGHDLNRHWHD-------PSPWAHPTLHAVKNLLKELDNDSTTQLDFYIDLHAHSSLMNCFIYG 163 (261)
T ss_pred eecCcceeecCCcCcCcCcCCCCCCCC-------CCcccChHHHHHHHHHHHhhhccccCeeEEEEeeccccccceeecc
Confidence 9999999999 7999999999999974 3678999999999999974 79999999999864 4666
Q ss_pred CCC--CCCHHHHHHHHHHHHHHhccccC-CCccccceeccceeEecCCCccccccccCCc--eEEEEEecCCCCC
Q 037202 149 YYG--CPDDEAFQFLASVYSRSHYNMSL-STEFQGGIINGASWYPIYGGMQDWNYIYGGC--FELTLEISDDKWP 218 (393)
Q Consensus 149 y~~--~pd~~~~~~la~~~~~~~~~m~~-~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~--~~~T~El~~~~~p 218 (393)
+.. .++....+.+...++......+. ...|.... .-.|+..=|.+...++ .++|+|++-+++.
T Consensus 164 ~~~~~~~~~~~~~~fp~~l~~~~~~F~~~~~~f~~~~-------~k~gtar~~~~~~~~~~~~s~TlE~sf~g~~ 231 (261)
T cd06908 164 NTYDDVYRYERQLVFPKLLAQNAEDFSMEHTMFNRDA-------VKAGTGRRFLGSLLSDNVNCYTLEVSFYGYN 231 (261)
T ss_pred ccCCccccHHHHHHHHHHHHHhCHHhcccCCcccCCC-------CCCChHHHHHHHHhCCCceEEEEeecCCccc
Confidence 542 23334444555555443322111 11221110 1235555677776665 9999999866543
No 34
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=100.00 E-value=5.3e-33 Score=262.96 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=153.0
Q ss_pred CeEeeeeCCCceEEEEEEeCCCC---CCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEE
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPG---VEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHIL 77 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~---~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~iv 77 (393)
+.+||+|.+||+|++++|++... ....||.|+|+|++||+|++|+.+++.++++|+.. ++.++.|++++.|+||
T Consensus 15 ~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~k~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~~---~~~~~~Ll~~~~~~ii 91 (258)
T cd06235 15 RKILCTTLGGLPVPLLTITSPSSKSIPIKKKKVIVITARQHPGETNSSFVMQGFIDFLLSD---SPEAQYLRENFIFKII 91 (258)
T ss_pred EEEeEEcCCCCeeeEEEEeCCcccccccCCCcEEEEECCcCCCChHHHHHHHHHHHHHhcC---CHHHHHHHhccEEEEE
Confidence 36899999999999999998532 23579999999999999999999999999999864 5678999999999999
Q ss_pred eccCccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc----ceeEEEecCCCcee---cccCC
Q 037202 78 PSMNPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI----HFTASASLHGVISL---IQRYY 149 (393)
Q Consensus 78 P~~NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~----~~~~~idlHsg~~~---~p~~y 149 (393)
|++||||+.+. +|.|+.|+||||||.. +.++++||+++++++++++ ++++++|+|+++.. +.|+.
T Consensus 92 Pm~NPDG~~~g~~R~n~~GvDLNR~w~~-------p~~~~~PE~~~~~~~i~~~~~~~~~~~~iDlH~~s~~~~~F~yg~ 164 (258)
T cd06235 92 PMLNPDGVIHGNYRCSLSGIDLNRQWKN-------PDKKLHPEIYHVKQLIKKLSQERNIALFIDLHGHSRKKNSFMYGC 164 (258)
T ss_pred ccccccceeecCCcCCCCCCCcCCCCCC-------CCcccCcHHHHHHHHHHHHhccCCceEEEecccccccCCeeeecC
Confidence 99999999985 8999999999999974 2578999999999999997 89999999998854 33433
Q ss_pred CCCCCH---HHHHHHHHHHHHHhccccC-CCccccceeccceeEecCCCccccccccCCc-eEEEEEecCCC
Q 037202 150 YGCPDD---EAFQFLASVYSRSHYNMSL-STEFQGGIINGASWYPIYGGMQDWNYIYGGC-FELTLEISDDK 216 (393)
Q Consensus 150 ~~~pd~---~~~~~la~~~~~~~~~m~~-~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~-~~~T~El~~~~ 216 (393)
...++. ...+.+.+.++...+.... ...|..+ ....|++..+.|...++ .++|+|++-++
T Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~f~~~~c~f~~~-------~~k~~tar~~~~~~~~~~~syTlE~sf~g 229 (258)
T cd06235 165 SNSDDPLNYYKERLFPKLLSKLCPYFSFSSCSFKVQ-------KDKEGTARVALWRELGIPNSYTLETSFGG 229 (258)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhCcccCccccccCCC-------CCCCCcHHHHHHHHcCCceEEEEeeeccc
Confidence 333322 3334445544443221110 1122211 12467788888876555 99999999654
No 35
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=100.00 E-value=9.5e-33 Score=261.84 Aligned_cols=194 Identities=20% Similarity=0.240 Sum_probs=153.9
Q ss_pred eeeeCCCceEEEEEEeCCCCC-----------------------CCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhcc
Q 037202 4 IGKSVSGFPLWVIEISDKPGV-----------------------EEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHV 60 (393)
Q Consensus 4 iG~S~egr~i~~l~i~~~~~~-----------------------~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~ 60 (393)
+|+|.|||+|.++.|+++... .+.+|.|+|.++|||+||+|.+++++++++|+..
T Consensus 1 ~G~s~egR~l~~~~I~s~~n~~~l~~~~~~~~~la~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~-- 78 (271)
T cd06238 1 YGRTHEGRPLLLATITSPENIARLDQIREDHLALADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAA-- 78 (271)
T ss_pred CCcCCCCCeeEEEEEeCHHHHHhHHHHHHHHHHhcCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHc--
Confidence 699999999999999986321 1357899999999999999999999999999984
Q ss_pred CChHHHHhhcCeEEEEEeccCcccccc-c--------------------------ccCCCCCCCCCCCCCCCCCCCCCCC
Q 037202 61 KDSLARLIVENMHLHILPSMNPDGYAL-K--------------------------RRGNANNIDLNRDFPDQFFPMNNDE 113 (393)
Q Consensus 61 ~d~~~~~ll~~~~i~ivP~~NPDG~~~-~--------------------------~R~N~~gvDLNRNfp~~w~~~~~~~ 113 (393)
.|+.++++|+++.|+|+|++||||++. . .|.|+.|+||||||.
T Consensus 79 ~~~~~~~ll~~~~i~i~P~~NPDG~~r~~~w~~~~~~~~~~~d~~~r~~~~~wp~~R~n~~g~DLNRD~~---------- 148 (271)
T cd06238 79 QGDEIEALLDNAVVLIDPMQNPDGRDRFVNWYNSNRGMVPSADPQDREHNEPWPGGRTNHYWFDLNRDWL---------- 148 (271)
T ss_pred CCHHHHHHHhcCEEEEEeccCCCHHHHHHHhhhhccCCccccchhhhhcccCCccccccccCcccccccc----------
Confidence 578899999999999999999999994 1 267899999999994
Q ss_pred CCChHHHHHHHHHHHhcceeEEEecCCCcee-----cc---cCCCCC--C-CHHHHHHHHHHHHHHhccccCCCccccce
Q 037202 114 EACQPETRAIMSWVRQIHFTASASLHGVISL-----IQ---RYYYGC--P-DDEAFQFLASVYSRSHYNMSLSTEFQGGI 182 (393)
Q Consensus 114 ~~sepEt~ai~~~~~~~~~~~~idlHsg~~~-----~p---~~y~~~--p-d~~~~~~la~~~~~~~~~m~~~~~y~~g~ 182 (393)
+++|||||++++++.++++++++|+|+++.. .| +.+.+. | ..+....++...+++.... +..|..|.
T Consensus 149 ~~s~pEtra~~~~~~~~~p~~~~D~H~~g~~~~~~~~P~~~~~~np~~~p~~~~~~~~~g~~~~~al~~~--G~~Y~t~~ 226 (271)
T cd06238 149 PLTQPESRGRLAAYHEWRPNVVVDFHEMGTNSTYFFAPGAPPRTNPLTPDQNRDLTATIGRNHAKAFDEI--GWLYFTRE 226 (271)
T ss_pred cccCHHHHHHHHHHHhcCCeEEEEeccCCCccceEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHhc--CCcEEecc
Confidence 6899999999999999999999999996532 23 112221 1 2345556666655555332 45565554
Q ss_pred eccceeEecCCCccccccccCCceEEEEEecCC
Q 037202 183 INGASWYPIYGGMQDWNYIYGGCFELTLEISDD 215 (393)
Q Consensus 183 ~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~ 215 (393)
. -+.|||..|++..|. .|.+.+|+|.+..
T Consensus 227 ~-~d~~ypg~g~s~~~~---~g~ig~l~E~~~~ 255 (271)
T cd06238 227 V-FDDFYPGYGSTYPDL---NGAIGMLYEQASS 255 (271)
T ss_pred c-ccccccCcCcchhhh---cCceeEEEEecCC
Confidence 4 368999999887776 4788999999853
No 36
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.98 E-value=2.3e-31 Score=247.54 Aligned_cols=126 Identities=30% Similarity=0.481 Sum_probs=117.4
Q ss_pred eeeeCCCceEEEEEEeCCCCC----CCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEec
Q 037202 4 IGKSVSGFPLWVIEISDKPGV----EEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPS 79 (393)
Q Consensus 4 iG~S~egr~i~~l~i~~~~~~----~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~ 79 (393)
||+|+|||+|++++|+++++. ...+|.|+++|++||+|++|+++++.++++|+. ..++.++++|+++.|+|+|+
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~~~~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~--~~~~~~~~lL~~~~i~ivP~ 78 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSALDIANRPTVLLVGTQHGDEPAGREALLIIARDLAF--GEDEELVPLLHQTTVLFVPT 78 (236)
T ss_pred CccCCCCCeeEEEEEecCCCccccccCCCCEEEEECCcCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHhcceEEEEeC
Confidence 799999999999999987642 247899999999999999999999999999986 45788999999999999999
Q ss_pred cCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCC
Q 037202 80 MNPDGYALKRRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGV 141 (393)
Q Consensus 80 ~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg 141 (393)
+||||++..+|.|++|+||||||+ +.++|||+++++++.++++++++|+|++
T Consensus 79 ~NPDG~~~~~R~n~~g~DlNRd~~----------~~~~pEt~al~~~~~~~~p~~~iDlHe~ 130 (236)
T cd06243 79 ANPDGREADTRSNADGIDINRDHL----------LLNTPEAQALASVLRDYRPDVVVDAHEY 130 (236)
T ss_pred cCccHhhcCCcCCCCCcccCCCCC----------CCCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 999999999999999999999996 4689999999999999999999999998
No 37
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.98 E-value=1.2e-31 Score=248.52 Aligned_cols=128 Identities=30% Similarity=0.461 Sum_probs=118.0
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
++.||+|++||+|++++|+++ +|+|++.|++||+|+.|++++++|+++|+.+. ++.++.++++++|+|||++
T Consensus 12 ~~~iG~S~eGrpI~~l~ig~g------~~~vli~agiHG~E~~g~~all~ll~~L~~~~--~~~~~~ll~~~~v~iiP~l 83 (231)
T cd06239 12 VEVIGKSVEGRPIYSVKFGSG------KIKILLWSQMHGNESTTTKALLDLLNFLGTSK--DQEAKKILDEVTLVIIPML 83 (231)
T ss_pred EEEeeECCCCCeEEEEEEcCC------CcEEEEEeccCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHhCCEEEEEecc
Confidence 468999999999999999984 58999999999999999999999999999753 4556899999999999999
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCceecc
Q 037202 81 NPDGYALKRRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISLIQ 146 (393)
Q Consensus 81 NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~~p 146 (393)
||||++..+|.|++|+||||||+ +.++||+++++++++++++++++|||+++.++.
T Consensus 84 NPDG~~~~~R~N~~GvDLNRdf~----------~~s~PEtr~l~~~~~~~~pd~~iDlH~~~~~y~ 139 (231)
T cd06239 84 NPDGAEAYTRVNANGVDLNRDAQ----------DLSQPESRLLRDVYDGFQPDFCFNLHDQRTIYG 139 (231)
T ss_pred CccHHHHcccCCCcCCcCCCCCC----------CCChHHHHHHHHHHHhcCCEEEEEECCCCCccC
Confidence 99999999999999999999996 468999999999999999999999999987743
No 38
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.98 E-value=2.3e-31 Score=249.39 Aligned_cols=198 Identities=22% Similarity=0.212 Sum_probs=145.4
Q ss_pred eeeeCCCceEEEEEEeCCCC----------------------C-----CCCCCEEEEEeccCCCChhHHHHHHHHHHHHH
Q 037202 4 IGKSVSGFPLWVIEISDKPG----------------------V-----EEPEPAFKFIGNVHGDEPVGRELLILLANWIC 56 (393)
Q Consensus 4 iG~S~egr~i~~l~i~~~~~----------------------~-----~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~ 56 (393)
||||.|||+|+++.|++++. . -+.++.++++++|||+|+.|+++++.++++|+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~ 80 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDETPGIDAQTELIEELA 80 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999998750 0 13577888999999999999999999999999
Q ss_pred HhccC--------------ChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 037202 57 DNHVK--------------DSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFPMNNDEEACQPETRA 122 (393)
Q Consensus 57 ~~y~~--------------d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~a 122 (393)
.++.. ++.+++||+++.|+|+|++||||+++.+|.|++|+||||||. ..++|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~~~R~Na~G~DLNRD~~----------~~sqpEt~a 150 (268)
T cd06244 81 QEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVAGTRENANGFDLNRDNS----------FQTQPETQA 150 (268)
T ss_pred hcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCcceeeeecCCCccccCCCCC----------cccCHHHHH
Confidence 87642 889999999999999999999999999999999999999995 368999999
Q ss_pred HHHHHHhcceeEEEecCCCce-e--cccCCCCCC--CHHHHHHHHHHHHHHhcccc-----CCCccc-----cceeccce
Q 037202 123 IMSWVRQIHFTASASLHGVIS-L--IQRYYYGCP--DDEAFQFLASVYSRSHYNMS-----LSTEFQ-----GGIINGAS 187 (393)
Q Consensus 123 i~~~~~~~~~~~~idlHsg~~-~--~p~~y~~~p--d~~~~~~la~~~~~~~~~m~-----~~~~y~-----~g~~~~~~ 187 (393)
+++++.++++++++|+|++.. . .|..--..| +.+++...+...+.+...-. .+..|. .+. .=+.
T Consensus 151 v~~~~~~w~P~~~~dlHg~~~~~~~~P~~~p~np~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~e-~~D~ 229 (268)
T cd06244 151 IVALIAEWNPASFLDLHGYVEGFLIEPCTPPHEPNFEYDLLADHALAQAHAMGRAGIANSDKYDSYVIPKRDWED-GWDD 229 (268)
T ss_pred HHHHHHHhCCeEEEEeCCCCCceEEcCCCCCCCCCcCHHHHHHHHHHHHHHHHHHhhccCCCcceeeeecccccc-cccc
Confidence 999999999999999998652 2 232110112 23444443333333321100 112221 111 1234
Q ss_pred eEecCCCccccccccCCceEEEEEecCC
Q 037202 188 WYPIYGGMQDWNYIYGGCFELTLEISDD 215 (393)
Q Consensus 188 ~y~~~G~~~Dw~y~~~~~~~~T~El~~~ 215 (393)
||+..|++ |. ...|.+++|+|+...
T Consensus 230 ~y~gy~~~--yp-~~~G~ig~~~E~p~~ 254 (268)
T cd06244 230 MSPIYTPM--YA-MLHGALGHTIEVPTL 254 (268)
T ss_pred ccCccccc--hh-hhcCceeEEEEecCC
Confidence 56666652 22 245888999999763
No 39
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.97 E-value=1.9e-30 Score=246.53 Aligned_cols=130 Identities=26% Similarity=0.338 Sum_probs=117.8
Q ss_pred CeEeeeeCCCceEEEEEEeCCCC--CCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEe
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPG--VEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILP 78 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~--~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP 78 (393)
+.+||+|+|||+|++++|++++. ....||.|+++||+||+||+|+++++.|+++|+.+ +...++|+++.|+|+|
T Consensus 25 ~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~V~i~~giHg~E~~g~~a~l~ll~~L~~~----~~~~~lL~~~~i~ivP 100 (268)
T cd06242 25 HSDIGKSEEGRSIPYVYLSTSKSSSSSSKKLRVWLQGGVHGNEPAGDEAALALLGKLDNN----PKWASVLEKIDIIVLP 100 (268)
T ss_pred EEECccccCCceeEEEEEecCCccccCCCCCEEEEECCcCCCCHHHHHHHHHHHHHHHhC----chHHHHHhcCeEEEEe
Confidence 46899999999999999998642 23578999999999999999999999999999874 3345899999999999
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCcee
Q 037202 79 SMNPDGYALKRRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISL 144 (393)
Q Consensus 79 ~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~ 144 (393)
++||||+++.+|.|++|+||||||. +.++|||+++++++.++++++++|+|.++..
T Consensus 101 ~~NPDG~~~~~R~na~g~DlNRD~~----------~~~~pEtra~~~~~~~~~P~v~iD~He~~~~ 156 (268)
T cd06242 101 RYNPDGSAYFQRTLATGYDPNRDHT----------KLARQQTRDIKEAFSKFNPHIAIDAHEYGAF 156 (268)
T ss_pred ccCcchhhhccccCCcCcccCCCCC----------cccCHHHHHHHHHHHHhCCcEEEEeccCCcc
Confidence 9999999999999999999999994 6789999999999999999999999997754
No 40
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.97 E-value=4.9e-31 Score=236.72 Aligned_cols=156 Identities=28% Similarity=0.472 Sum_probs=126.7
Q ss_pred EEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 037202 31 FKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFPMN 110 (393)
Q Consensus 31 v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~ 110 (393)
++++||+||+|++|.+++++|++.|+.. .+++++|+|||++||||+++.+|.|++|+|||||||..|.+..
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~~---------~l~~~~i~ivP~~NPdG~~~~~R~n~~gvDLNRnFp~~~~~~~ 71 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPGL---------ILRGLSWYVIPVLNPDGLLRATRCNANGVDLNRNFPTKDWPPG 71 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHHH---------hhcCCeEEEEeCcCccHHhhCcccCCCCcChhhcCCccccccC
Confidence 5899999999999999999999999863 2678999999999999999999999999999999999986432
Q ss_pred --------CCCCCChHHHHHHHHHHHhcceeEEEecCCCceecccCCCCCCCHHHHHHHHHHHHHHhccccCCCccccce
Q 037202 111 --------NDEEACQPETRAIMSWVRQIHFTASASLHGVISLIQRYYYGCPDDEAFQFLASVYSRSHYNMSLSTEFQGGI 182 (393)
Q Consensus 111 --------~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~~p~~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~ 182 (393)
++.+.|||||+++++++.+.++++++|+|++..... ...+ . +.||+++.... +
T Consensus 72 ~~~~~~~~G~~~~sepEt~al~~~~~~~~~~~~idlHs~~~~~~---~~~~--~--~~la~~~g~~~--------~---- 132 (178)
T cd06904 72 ASRYRRYPGPKPGSEPESRALMDLIERFKPDVVVSFHAPLGVLD---GDGP--N--EPLARKFGYLG--------F---- 132 (178)
T ss_pred CCcccccCCCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCCeec---CCCc--h--hHHHHHhCCCc--------c----
Confidence 346889999999999999999999999999864321 1111 1 66666553210 0
Q ss_pred eccceeEecCCCccccccccCCceEEEEEecCCC
Q 037202 183 INGASWYPIYGGMQDWNYIYGGCFELTLEISDDK 216 (393)
Q Consensus 183 ~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~ 216 (393)
....|+..|++.||++...+++++|+|+|.+.
T Consensus 133 --~~~~~~~~G~~~~~a~~~~gip~it~Elg~~~ 164 (178)
T cd06904 133 --DDLGYPTPGSLGSWAGVERNIPVITIELPYNL 164 (178)
T ss_pred --ccCCccCCCcHHHHHhhcCCCeEEEEEcCCcc
Confidence 11235568999999998889999999999755
No 41
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.97 E-value=4.9e-30 Score=238.69 Aligned_cols=125 Identities=36% Similarity=0.575 Sum_probs=114.1
Q ss_pred eeeeCCCceEEEEEEeCCCCC------CCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEE
Q 037202 4 IGKSVSGFPLWVIEISDKPGV------EEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHIL 77 (393)
Q Consensus 4 iG~S~egr~i~~l~i~~~~~~------~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~iv 77 (393)
||+|.|||+|++++|+++... .+.||.|++.|++||+|+.|.++++.|+++|+.+ +...+.+|++++|+|+
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~~~~~~~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~~---~~~~~~ll~~~~i~iv 77 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKRALAKEGKPRVWIDAQIHGNESAGSDALLELLRQLASA---SDEEAKMLENIVIVLI 77 (226)
T ss_pred CccCCCCCeEEEEEEeCCccccccccccCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CHHHHHHHhCCEEEEE
Confidence 799999999999999985431 2368999999999999999999999999999863 3445889999999999
Q ss_pred eccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCC
Q 037202 78 PSMNPDGYALKRRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGV 141 (393)
Q Consensus 78 P~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg 141 (393)
|++||||++..+|.|++|+||||||+. .++||++++++++.++++++++|+|++
T Consensus 78 P~~NPDG~~~~~R~n~~g~DLNRd~~~----------~~~pEt~~~~~~~~~~~p~~~iDlH~~ 131 (226)
T cd03857 78 PRANPDGAALFTRENANGLDLNRDFLK----------LTQPETRAVREVFIEWKPQFFIDLHEY 131 (226)
T ss_pred eccCCChHHhccccCCCcccCCCCCCC----------cCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 999999999999999999999999974 589999999999999999999999998
No 42
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.97 E-value=8e-30 Score=243.61 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=120.5
Q ss_pred eEeeeeCCCceEEEEEEeCCCCC----------------------CCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhc
Q 037202 2 FSIGKSVSGFPLWVIEISDKPGV----------------------EEPEPAFKFIGNVHGDEPVGRELLILLANWICDNH 59 (393)
Q Consensus 2 ~~iG~S~egr~i~~l~i~~~~~~----------------------~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y 59 (393)
..+|+|.|||+|++++|++..+. ...||.|+|+|++|++||.|+.++++++++|+.+
T Consensus 19 ~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~~~s~~~~~ll~~Ll~~- 97 (304)
T cd06236 19 EVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGETPSSFVFNGFLKFLLNK- 97 (304)
T ss_pred EEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC-
Confidence 57999999999999999986432 1469999999999999999999999999999974
Q ss_pred cCChHHHHhhcCeEEEEEeccCccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc----ceeE
Q 037202 60 VKDSLARLIVENMHLHILPSMNPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI----HFTA 134 (393)
Q Consensus 60 ~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~----~~~~ 134 (393)
.|+.++.|++++.|+|||++||||++.+ +|.|+.|+||||+|-. +.+.++||++++++++..+ ++++
T Consensus 98 -~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~R~~~~G~DLNR~y~~-------p~~~~~Pei~aik~~i~~~~~~~~i~~ 169 (304)
T cd06236 98 -DDPRAALLRRRFVFKLIPMLNPDGVYRGHYRTDTRGVNLNRVYLN-------PDPELHPSIYAIKKLILYLHEESRLAF 169 (304)
T ss_pred -CCHHHHHHHhCCeEEEEEeEcccccccCccccCCcCCCcCcCCCC-------CCcccCHHHHHHHHHHHHhhccCCceE
Confidence 4888999999999999999999999987 6999999999999853 3588999999999999875 6999
Q ss_pred EEecCCCcee
Q 037202 135 SASLHGVISL 144 (393)
Q Consensus 135 ~idlHsg~~~ 144 (393)
+||||+.+..
T Consensus 170 yiDlH~hs~~ 179 (304)
T cd06236 170 YIDLHAHASK 179 (304)
T ss_pred EEEecccccc
Confidence 9999998864
No 43
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.97 E-value=1.6e-29 Score=236.72 Aligned_cols=199 Identities=17% Similarity=0.209 Sum_probs=147.0
Q ss_pred CeEeeeeCCCceEEEEEEeCCCC---CCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEE
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPG---VEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHIL 77 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~---~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~iv 77 (393)
+++||+|+|||+|++++|++..+ ....||.|+|+|++|++|+.|..++..+++.|+. .|+.++.|++++.|+||
T Consensus 16 ~~~lg~S~eGR~i~~LtIt~~~~~~~~~~~K~~I~I~ariHp~E~~~s~~~~gll~~L~~---~~~~a~~Lr~~~~f~Iv 92 (261)
T cd06907 16 LRVLCRTLAGNTVYLLTITSPSSNPSLAAAKKAVVLTARVHPGETNASWMMKGFLDFLTS---NSPDAQLLRDTFIFKIV 92 (261)
T ss_pred EEEEEECCCCCeeeEEEEcCCCccccccCCCCEEEEECCcCCChHHHHHHHHHHHHHHhc---CCHHHHHHHhcCCEEEE
Confidence 36899999999999999998532 2346999999999999999999999999999985 47889999999999999
Q ss_pred eccCccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc----ceeEEEecCCCcee---cccCC
Q 037202 78 PSMNPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI----HFTASASLHGVISL---IQRYY 149 (393)
Q Consensus 78 P~~NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~----~~~~~idlHsg~~~---~p~~y 149 (393)
|++||||+..+ +|.|+.|+||||||... .+...||+.++++++... ++++++|||+.+.. ++|++
T Consensus 93 PmlNPDGv~~G~~R~~~~G~DLNR~w~~p-------~~~~~P~i~~~k~li~~l~~~~~i~~ylDlHghs~~~~~F~yG~ 165 (261)
T cd06907 93 PMLNPDGVIVGNYRCSLAGRDLNRNYKTP-------LKDSFPTIWYTKNMVKRLLEEREVILYCDLHGHSRKNNVFMYGC 165 (261)
T ss_pred EeecCccccccCCcCCCcCCCCCcCCCCC-------CcccCchHHHHHHHHHHHHhcCCeEEEEEeccchhccceEeecC
Confidence 99999999998 89999999999999753 356889988888776653 89999999998865 55655
Q ss_pred CCCCCHH---HHHHHHHHHHHHhcc-cc-CCCccccceeccceeEecCCCccccccccCCceEEEEEecCCC
Q 037202 150 YGCPDDE---AFQFLASVYSRSHYN-MS-LSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDK 216 (393)
Q Consensus 150 ~~~pd~~---~~~~la~~~~~~~~~-m~-~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~ 216 (393)
...++.. .-+.+.+.++...+. .+ .+..|..... -.|+..=..+...++.++|+|.+-++
T Consensus 166 ~~~~~~~~~~~~~~fp~l~~~~~~~~F~~~~c~F~~~~~-------k~~t~Rv~~~~~~~~~syTlE~s~~G 230 (261)
T cd06907 166 ENKLNPEKWLHERVFPLMMSKNAPDKFSFRSCKFKVQKS-------KEGTGRVVMWRLGILNSFTMEATFCG 230 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCccceecccCCccCCCC-------CCCCceEEhhhhcCceEEEEeeEccc
Confidence 5444322 223344444443221 11 1223322111 13444334445556689999999755
No 44
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.96 E-value=2.8e-29 Score=238.31 Aligned_cols=128 Identities=26% Similarity=0.386 Sum_probs=113.9
Q ss_pred CeEeeeeCCCceEEEEEEeCCCCC------CCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEE
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPGV------EEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHL 74 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~~------~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i 74 (393)
+.+||+|.|||+|++++|+++... .+.||.|+|+||+||+|+.|.++++.|+++|+.++ . ..+|+++.|
T Consensus 15 ~~~iG~S~eGR~i~~l~is~~~~~~~~~~~~~~kp~v~i~agiH~~E~~G~~a~~~ll~~L~~~~--~---~~ll~~~~i 89 (266)
T cd06241 15 LESFGKTPEGRPLHLLVLSKDGAFTPEEAKRSGKPVVLVQAGIHAGEIDGKDAGLMLLRDLADGK--K---DALLDKVVL 89 (266)
T ss_pred EEEeEeCCCCCeeEEEEEecCCccchhhhcccCCCEEEEeCCcCCCCchHHHHHHHHHHHHHhcc--h---HHHHhCCEE
Confidence 468999999999999999975321 24689999999999999999999999999998743 1 279999999
Q ss_pred EEEeccCccccccc---------------ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecC
Q 037202 75 HILPSMNPDGYALK---------------RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLH 139 (393)
Q Consensus 75 ~ivP~~NPDG~~~~---------------~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlH 139 (393)
+|||++||||++.. ||.|++|+||||||+ ..++|||||+++++.++++++++|+|
T Consensus 90 ~ivP~~NpDG~~~~~~~~r~~q~gp~~~~~R~na~g~DLNRdf~----------~~~~pEtra~~~~~~~~~p~~~iD~H 159 (266)
T cd06241 90 VFIPVFNVDGHERRSPYNRTNQNGPEEYGWRGNARNLNLNRDFI----------KLDAPEMRAFAKLFNKWNPDLFIDNH 159 (266)
T ss_pred EEEeCCCccHHHhcccccccccCCCCccCceecccceecCCCCc----------ccCCHHHHHHHHHHHHhCCCEEEEec
Confidence 99999999999864 999999999999996 36799999999999999999999999
Q ss_pred CCce
Q 037202 140 GVIS 143 (393)
Q Consensus 140 sg~~ 143 (393)
+..+
T Consensus 160 ~~~g 163 (266)
T cd06241 160 VTDG 163 (266)
T ss_pred cCCC
Confidence 8643
No 45
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.96 E-value=2.2e-28 Score=231.46 Aligned_cols=200 Identities=22% Similarity=0.262 Sum_probs=146.3
Q ss_pred CeEeeeeCCCceEEEEEEeCCCC----------------------------CCCCCCEEEEEeccCCCChhHHHHHHHHH
Q 037202 1 MFSIGKSVSGFPLWVIEISDKPG----------------------------VEEPEPAFKFIGNVHGDEPVGRELLILLA 52 (393)
Q Consensus 1 l~~iG~S~egr~i~~l~i~~~~~----------------------------~~~~kp~v~i~agiHg~E~~g~~~~l~li 52 (393)
|++||+|+|||+|+++.|++... ....||.|++.|+|||+|++|++++++++
T Consensus 2 l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~~g~ea~l~l~ 81 (273)
T cd06240 2 LVEIGKTEEGRPQIMAAISSPENLAKLDHYKAILRKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTETGGPQMLMELA 81 (273)
T ss_pred eeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHHhhhhccccccchhhhhhhccCCCEEEEECCcCCCchHHHHHHHHHH
Confidence 68999999999999999997542 11358999999999999999999999999
Q ss_pred HHHHHhccCChHHHHhhcCeEEEEEeccCcccccccc--------------------cCCCCCCCCCCCCCCCCCCCCCC
Q 037202 53 NWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKR--------------------RGNANNIDLNRDFPDQFFPMNND 112 (393)
Q Consensus 53 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~--------------------R~N~~gvDLNRNfp~~w~~~~~~ 112 (393)
++|+.+ .|+.++++|+++.|+|+|++||||++... |.|..|+||||+|
T Consensus 82 ~~L~~~--~d~~~~~lLd~~~i~i~P~~NPDG~er~~~w~~~~~~~~~~~~~~~~~~~~~y~g~DlNRD~---------- 149 (273)
T cd06240 82 YRLATE--EDPEIKRILDNVIVLIVPVANPDGRDRVVDWYMRTLGPPKRDRSPLPPLYGKYVGHDNNRDG---------- 149 (273)
T ss_pred HHHHhc--CCHHHHHHHhcCEEEEEeCcCCCHHHHhhhhhhhccCCcccCCCCcccccCccCCcCCCccc----------
Confidence 999874 68999999999999999999999999741 3345689999999
Q ss_pred CCCChHHHHHHHHHHHhcceeEEEecCCCcee----c-cc---CCCCCCCH---HHHHHHHHHHHHHhccccC-CCcccc
Q 037202 113 EEACQPETRAIMSWVRQIHFTASASLHGVISL----I-QR---YYYGCPDD---EAFQFLASVYSRSHYNMSL-STEFQG 180 (393)
Q Consensus 113 ~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~----~-p~---~y~~~pd~---~~~~~la~~~~~~~~~m~~-~~~y~~ 180 (393)
....+||++++.+++.++.+++++|+|..+.- + |. .+.+.-+. +.+..++...+........ |. |+.
T Consensus 150 ~~~~~~et~~~~~~~~~w~P~v~~D~He~g~~~~~~f~p~~~~p~np~~~~~~~~~~~~~g~~~~~~~~~~g~~G~-~t~ 228 (273)
T cd06240 150 YMNQQETTNNSRKLFLEWHPQIMYDLHQSGPAGPRLFVPPGTDPFNPNIDPILITELQMVGAAMAARLTAEGKPGV-FTH 228 (273)
T ss_pred chhcCHHHHHHHHHHHhcCCcEEEEcccCCCCCCeEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCce-eec
Confidence 45789999999999999999999999986422 1 21 11111122 2344455554443321111 22 544
Q ss_pred ceeccceeEecCCCccccccccCCceEEEEEecCCCCC
Q 037202 181 GIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWP 218 (393)
Q Consensus 181 g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p 218 (393)
+.- +.||+-.|+.. -...|.+.++.|.....-|
T Consensus 229 ~~f--D~~ypgyg~t~---p~~~g~ig~l~E~~~~~~~ 261 (273)
T cd06240 229 GFY--DTWWPGYLRWV---AYFHNSIGRLTETFGNATP 261 (273)
T ss_pred Ccc--CCccCCccchh---hhhcCceeeeeEeccCCCC
Confidence 332 46777766532 1235778899998765433
No 46
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.93 E-value=1e-24 Score=205.15 Aligned_cols=133 Identities=19% Similarity=0.293 Sum_probs=113.0
Q ss_pred eEeeeeCCCceEEEEEEeCCCCCC--------CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeE
Q 037202 2 FSIGKSVSGFPLWVIEISDKPGVE--------EPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMH 73 (393)
Q Consensus 2 ~~iG~S~egr~i~~l~i~~~~~~~--------~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~ 73 (393)
..+++|.+||++.+++|++.++.. ..||.|+|+|++|++|..|+.++..+++.|+. .|+.++.|++++.
T Consensus 18 ~~Lc~Tl~G~~v~lltIt~~~~~~~~~~~~~~~~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~---~d~~a~~Lr~~~~ 94 (278)
T cd06906 18 QVLCETLGGNSCPLLTITAMPESNYYEHICQFRNRPYIFLSARVHPGETNASWVMKGTLEFLMS---SSPTAQSLRESYI 94 (278)
T ss_pred ecceeccCCCceeEEEEeCCCccccccccccccCCcEEEEEcccCCCcchHHHHHHHHHHHHhC---CCHHHHHHHHhCc
Confidence 468999999999999999865321 36899999999999999999999999999875 4899999999999
Q ss_pred EEEEeccCccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHH---HHHHHHHHHhc--ceeEEEecCCCcee
Q 037202 74 LHILPSMNPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPE---TRAIMSWVRQI--HFTASASLHGVISL 144 (393)
Q Consensus 74 i~ivP~~NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepE---t~ai~~~~~~~--~~~~~idlHsg~~~ 144 (393)
|+|||++||||+.++ +|.|..|+||||||.. +.+-..|| ++++.+++.+. .+.+++|+|+++..
T Consensus 95 f~IvPmlNPDGvv~Gn~Rc~~~G~DLNR~w~~-------p~~~~~P~i~~~k~l~~~l~~~~~~~~~yiDlHghs~~ 164 (278)
T cd06906 95 FKIVPMLNPDGVINGNHRCSLSGEDLNRQWQS-------PNPELHPTIYHTKGLLQYLAAIKRSPLVYCDYHGHSRK 164 (278)
T ss_pred EEEEeeecCccceecccccCCCCCCCCCCCCC-------CCcccChHHHHHHHHHHHHHHhCCCceEEEeecccccc
Confidence 999999999999997 8999999999999963 24555676 55566776653 67899999998754
No 47
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.92 E-value=4.1e-25 Score=206.00 Aligned_cols=121 Identities=27% Similarity=0.492 Sum_probs=108.0
Q ss_pred eEeeeeCC-CceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 2 FSIGKSVS-GFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 2 ~~iG~S~e-gr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
..+|+..+ +++|+++++.+.. .++|+++|+||+||+|+.|++++++|++++.. .++++++|+|+|++
T Consensus 18 ~~~g~~~~~~~pL~~l~~~~~~---~~~p~vlI~gGiHG~E~~G~~a~l~~l~~l~~---------~~l~~~~i~ivP~v 85 (236)
T cd06231 18 REYGQLAYQSYPLYALKSRGWD---SDLPRVLITAGIHGDEPAGPLGALEFLRAAAL---------ELAQDVNLSVYPCI 85 (236)
T ss_pred EEccccccCCeeEEEEEcCCCC---CCCCEEEEECCCCCCcHHHHHHHHHHHHHHHH---------HHhcCCeEEEEECc
Confidence 45677776 9999999997642 36899999999999999999999999999863 36788999999999
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc--ceeEEEecCCCce
Q 037202 81 NPDGYALKRRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI--HFTASASLHGVIS 143 (393)
Q Consensus 81 NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~--~~~~~idlHsg~~ 143 (393)
|||||+..+|.|++|+|||||||. ..++||++++++++.+. ++++++|||+++.
T Consensus 86 NPdG~~~~~R~n~~g~DLNR~F~~---------~~~~~E~~al~~~~~~~~~~~~~~IDLH~~~~ 141 (236)
T cd06231 86 NPSGFEAITRWNRNGIDPNRSFRS---------ESPSPEVRLLMEWLRRLGAAFDLHIDLHEDTE 141 (236)
T ss_pred ChhHHhcCccCCCCCccccCCCCC---------CCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Confidence 999999999999999999999984 45789999999999988 8999999999873
No 48
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.89 E-value=4.8e-23 Score=187.50 Aligned_cols=108 Identities=26% Similarity=0.317 Sum_probs=95.0
Q ss_pred eeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCccc
Q 037202 5 GKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDG 84 (393)
Q Consensus 5 G~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG 84 (393)
.+|+|||+|++++|+ ..||+|+|+||+||+||+|..++++|+++|+. +++++|+|+|++||||
T Consensus 21 a~S~EGR~I~~l~i~------~~Kp~I~I~gGvHarEwig~~~al~fi~~L~~-----------~~~~n~~I~P~vNPDG 83 (240)
T cd06232 21 ARSRQGRPVTGRYVA------GLDHPVVISAGQHANETSGVVGALRAAEALAA-----------RPGAHFALIPLENPDG 83 (240)
T ss_pred ccccCCCeeeEEEec------CCCcEEEEeCCcCCCcchhHHHHHHHHHHHhc-----------cCCceEEEEEeeCCcH
Confidence 479999999999992 24899999999999999999999999999975 5689999999999999
Q ss_pred ccccc--------------cCCCCCCCCC-CCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCC
Q 037202 85 YALKR--------------RGNANNIDLN-RDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGV 141 (393)
Q Consensus 85 ~~~~~--------------R~N~~gvDLN-RNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg 141 (393)
|++.. |.|+.|.|+| |+++ ++ +|++++++++.+..+.++||+|++
T Consensus 84 Ye~~~~L~r~nP~~~hHaaR~~A~g~D~~fr~~~----------~~--~Es~~~~~~~~~~~~~~hiDlHey 143 (240)
T cd06232 84 YALHERLRAEHPRHMHHAARYTALGDDLEYREFP----------PF--GEREARHQALAKSGAQLHVNLHGY 143 (240)
T ss_pred HHhhchhhccCcccccchhhhcccCCCcccccCC----------cc--hHHHHHHHHHHhhCCcEEEECCCC
Confidence 99873 5666677777 7663 33 899999999999999999999996
No 49
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=99.83 E-value=9.6e-20 Score=180.27 Aligned_cols=253 Identities=19% Similarity=0.213 Sum_probs=151.2
Q ss_pred EeeeeCCC--ceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEecc
Q 037202 3 SIGKSVSG--FPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSM 80 (393)
Q Consensus 3 ~iG~S~eg--r~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~ 80 (393)
.++++..| +.|.+.+++.. .+.|+++|+|++||+|+.|.+++.+|+++|......+ .+ +.+|++||++
T Consensus 4 ~~~~~~~g~~~~ipv~~~~g~----~~gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~~~~-----~l-~G~v~ivP~~ 73 (359)
T cd06250 4 PLPSPAPGTERELTVFRFGGA----GAGPKVYIQASLHADELPGMLVLHHLIELLKKLEAEG-----RI-LGEITLVPVA 73 (359)
T ss_pred ecccCCCCCeEEEEEEEEeCC----CCCCEEEEEeccccCchHHHHHHHHHHHHHhhhcccc-----cc-CceEEEEeCc
Confidence 45666556 66888888653 2359999999999999999999999999997532111 12 4689999999
Q ss_pred Cccccccc------ccCC-CCCCCCCCCCCCCCCCC--------CCC------------------CCCChHHHHHHHHHH
Q 037202 81 NPDGYALK------RRGN-ANNIDLNRDFPDQFFPM--------NND------------------EEACQPETRAIMSWV 127 (393)
Q Consensus 81 NPDG~~~~------~R~N-~~gvDLNRNfp~~w~~~--------~~~------------------~~~sepEt~ai~~~~ 127 (393)
||+|++.. .|.+ .+|.||||+||..-.+. .++ .....-.++.++..+
T Consensus 74 Np~g~~~~~~~~~~~R~~p~dg~dlNR~FPg~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~rla~~l 153 (359)
T cd06250 74 NPIGLNQRLGGFHLGRFDLASGTNFNRDFPDLADAVADFVEGHLTSDPAANVALVRQALREALAALLPPTELQSTLRLTL 153 (359)
T ss_pred ChHHHHhhccccccccccCCCCCccCcCCCCcchhhHHHhhhhcccchHHHHHHHHHHHHHHHhccCCCccHHHHHHHHH
Confidence 99999874 4555 48999999999742100 000 011222333355555
Q ss_pred Hhc--ceeEEEecCCCceecccCCCCCCCHHHHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccc------
Q 037202 128 RQI--HFTASASLHGVISLIQRYYYGCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWN------ 199 (393)
Q Consensus 128 ~~~--~~~~~idlHsg~~~~p~~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~------ 199 (393)
.+. ..|+.||||+++...|+.|...+..+..+.+|+.+...+.-.. ....++... .. .+.-|.
T Consensus 154 ~~~~~~aD~~IDLHsg~~~~~~vy~~~~~~~~~~~lA~~fg~~~i~~~--~~~~g~~~d------~~-~~~~~~~l~~~~ 224 (359)
T cd06250 154 QRLALDADIVLDLHCDDEAVLHLYTAEALWPDAEPLARYLGAEAVLLA--DNSGGGAFD------EA-FSCPWWALQARK 224 (359)
T ss_pred HHHhhcCCEEEECCCCCccCceEEECCccChhHHHHHHHhCCCeEEec--cCCCCccch------hh-HhhHHHHHHhhc
Confidence 443 8999999999986666655543334556678777653221110 000000000 00 011111
Q ss_pred ---c-ccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCcc----eEEEeceeee
Q 037202 200 ---Y-IYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRGRIFSSDSGRPLPG----SITIKGINYT 271 (393)
Q Consensus 200 ---y-~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G~V~d~~~g~Pi~a----~V~v~g~~~~ 271 (393)
+ ...+++++|+|+|.......+.+.. ..+++++++.. .|.+ +. ...|.+. .+...+.. .
T Consensus 225 ~~~~~~~~Gipait~E~G~~~~~~~~~~~~----~~~gi~~~L~~------~g~l-~~-~~~~~~~~~~~~~~~~~~~-~ 291 (359)
T cd06250 225 GPGRPIPFGCEAVTVELRGQEDVDHALAEK----DAEAILRYLVH------RGVI-AG-DAAPLPPLRRPATPLAGVE-M 291 (359)
T ss_pred ccccccccCCeEEEEEcCCCcccCHHHHHH----HHHHHHHHHHH------CcCc-cC-CCCCCCccccceEEccCcE-E
Confidence 1 2469999999999977555444444 45568888853 2333 11 0112111 12223222 2
Q ss_pred eeeecCceeEEeecCCC
Q 037202 272 VNAGRAFADYYRLLTPG 288 (393)
Q Consensus 272 ~~t~~~~G~y~r~l~pG 288 (393)
+.+ +..|.|.....+|
T Consensus 292 v~A-p~~Gl~~~~~~~G 307 (359)
T cd06250 292 LYA-PAGGMVVYRAAPG 307 (359)
T ss_pred EeC-CCCeEEEEecCCC
Confidence 344 4789998888888
No 50
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.81 E-value=5.5e-19 Score=170.30 Aligned_cols=225 Identities=19% Similarity=0.182 Sum_probs=138.6
Q ss_pred eEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccC
Q 037202 12 PLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRG 91 (393)
Q Consensus 12 ~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~ 91 (393)
.|.++.|... .+.|+++++||+||||+.|..++..|+++|.. ...+.+++++|++||+|++...|.
T Consensus 8 ~~pv~~~~g~----~~gp~v~i~~giHGdE~~G~~~~~~l~~~l~~----------~~~~g~v~~vp~~Np~a~~~~~R~ 73 (287)
T cd06251 8 SIPVHVIRGK----KPGPTLLLTAAIHGDELNGVEIIRRLLRQLDP----------KTLRGTVIAVPVVNVFGFLNQSRY 73 (287)
T ss_pred eeeEEEEeCC----CCCCEEEEEcCccCCchhHHHHHHHHHhcCCc----------ccCceEEEEEeCCCHHHHHhcccc
Confidence 3566666443 23499999999999999999999999988732 112468899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc--ceeEEEecCCCcee---cccCCCCCCCHHHHHHHHHHHH
Q 037202 92 NANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI--HFTASASLHGVISL---IQRYYYGCPDDEAFQFLASVYS 166 (393)
Q Consensus 92 N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~--~~~~~idlHsg~~~---~p~~y~~~pd~~~~~~la~~~~ 166 (393)
+.+|.||||+||... ..+++.+....+++.. .+++++|||+++.. .|+.+.... ++...+||+.+.
T Consensus 74 ~~d~~dlNR~fpg~~--------~g~~~~~~a~~i~~~~~~~~d~~iDlHs~~~~~~~~~~v~~~~~-~~~~~~la~~~g 144 (287)
T cd06251 74 LPDRRDLNRSFPGSK--------NGSLASRIAHLFFTEILSHADYGIDLHTGAIGRTNLPQIRADLD-NPEVLELARAFG 144 (287)
T ss_pred CCCccCHhhcCCCCC--------CCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCCCCccceEEEcCC-CHHHHHHHHhcC
Confidence 999999999999632 2233333333333332 48999999998632 344443333 345566776543
Q ss_pred HHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcce
Q 037202 167 RSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGV 246 (393)
Q Consensus 167 ~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi 246 (393)
.. +... . ...++..+.+....+++++|+|+|......++.+.. ...++++++..
T Consensus 145 ~~---------~il~--~-----~~~~g~l~~~~~~~g~~aitvE~G~~~~~~~~~~~~----~~~gi~~~L~~------ 198 (287)
T cd06251 145 AP---------VILN--S-----PGRDGSLRAAAVDAGIPSITYEAGEALRFDEDAIRA----GVRGILNVLRH------ 198 (287)
T ss_pred CC---------EEEe--e-----CCCCchHHHHHHHcCCcEEEEeCCCCcccCHHHHHH----HHHHHHHHHHH------
Confidence 21 1100 0 011233344445679999999999876544444444 44557788753
Q ss_pred eeEEeecCCCCCCcceEEEeceeeeeeeecCceeEEeecCCC
Q 037202 247 RGRIFSSDSGRPLPGSITIKGINYTVNAGRAFADYYRLLTPG 288 (393)
Q Consensus 247 ~G~V~d~~~g~Pi~a~V~v~g~~~~~~t~~~~G~y~r~l~pG 288 (393)
.|.+ +.. -.+....+.+......+.+ +..|.|.....+|
T Consensus 199 ~g~l-~~~-~~~~~~~~~~~~~~~~v~A-~~~G~~~~~~~~G 237 (287)
T cd06251 199 LGML-DGR-RTPKESEPVIARSSVWVRA-PQGGLLRSLVKLG 237 (287)
T ss_pred CCCc-cCC-CCCCCCceEEecCCeEEec-CCCeEEEEecCCC
Confidence 3333 221 0111123333332223344 4788887767676
No 51
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.80 E-value=1.1e-18 Score=168.70 Aligned_cols=234 Identities=19% Similarity=0.158 Sum_probs=144.2
Q ss_pred ceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCccccccccc
Q 037202 11 FPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRR 90 (393)
Q Consensus 11 r~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R 90 (393)
..|...++|++ .|+++|+|++||||+.|..++.+|+++|......+ .+.-+.++++||++||.|+....|
T Consensus 8 ~~~~~~~~g~~------gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~----~~~l~g~v~~vP~~N~~a~~~~~R 77 (298)
T cd06253 8 NRIEGFNFGGG------EKRICIVGGIHGDELQGLYICSLLIRFLKELEKRG----PLKLNGIVDVIPSVNPLGLNLGTR 77 (298)
T ss_pred cEEEeeecCCC------CcEEEEEccCccchHHHHHHHHHHHHHHhhhhccc----ccccCceEEEEeCcCHHHHHHhhC
Confidence 45566667643 48999999999999999999999999997531111 112378999999999999999999
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc--ceeEEEecCCCcee---cccCCCCCCCHHHHHHHHHH
Q 037202 91 GNA-NNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI--HFTASASLHGVISL---IQRYYYGCPDDEAFQFLASV 164 (393)
Q Consensus 91 ~N~-~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~--~~~~~idlHsg~~~---~p~~y~~~pd~~~~~~la~~ 164 (393)
.++ +|.||||.||.. +..+ .++.++..+.+. ..++.+|||+++.. .|+.+...+.++...++|+.
T Consensus 78 ~~p~d~~dlNR~Fpg~--------~~g~-~~~riA~~~~~~~~~~d~~iDLHsg~~~~~~~p~v~~~~~~~~~~~~lA~~ 148 (298)
T cd06253 78 FWPTDNSDINRMFPGD--------PQGE-TTQRIAAAVFEDVKGADYCIDLHSSNIFLEEIPQVRLYKTGSESLLPLAKF 148 (298)
T ss_pred cCCCCCCcccccCCCC--------CCCc-HHHHHHHHHHHHhcCCCEEEEccCCCcccccCCeEEEcCCCCHHHHHHHHH
Confidence 886 799999999962 1112 234444444332 78999999997532 45444333344566678776
Q ss_pred HHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhc
Q 037202 165 YSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKT 244 (393)
Q Consensus 165 ~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~ 244 (393)
+...+.-......+ ..|++ .++....+++++|+|+|.......+.+.. -..++++++.. ..
T Consensus 149 fg~~~i~~~~~~~~------------~~g~~-~~~~~~~g~paitvE~G~~~~~~~~~~~~----~~~gi~~~L~~--~g 209 (298)
T cd06253 149 LNLDVIWIHPSSTV------------DEATL-AHNLQVWGTPAFSVEMGVGMRIDKEYANQ----IVSGILRFMTK--MG 209 (298)
T ss_pred hCCCEEEecCCCCc------------chhhH-HHHHHHhCCeEEEEEcCCCcccCHHHHHH----HHHHHHHHHHH--Cc
Confidence 65322100000000 01332 34445679999999999866444444443 45568888863 11
Q ss_pred ceeeEEeecCCCCCCcceEEEeceeeeeeeecCceeEEeecCCC
Q 037202 245 GVRGRIFSSDSGRPLPGSITIKGINYTVNAGRAFADYYRLLTPG 288 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~a~V~v~g~~~~~~t~~~~G~y~r~l~pG 288 (393)
-+.|.. -.|....+........+.+ +..|.|.....+|
T Consensus 210 ~l~g~~-----~~~~~~~~~~~~~~~~v~A-~~~Gl~~~~~~~G 247 (298)
T cd06253 210 ILKGNV-----HNGYRSTIAEERDVVYVNA-ETSGIFVPAKHLG 247 (298)
T ss_pred CccCCC-----CCCCCCceeecCceEEEEc-CCCeEEEECcCCC
Confidence 233322 1121221111111223344 4789998888887
No 52
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=99.79 E-value=2.9e-18 Score=167.40 Aligned_cols=226 Identities=17% Similarity=0.124 Sum_probs=145.9
Q ss_pred eEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccC
Q 037202 12 PLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRG 91 (393)
Q Consensus 12 ~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~ 91 (393)
+|.+..|..++ .|+++|+||+||+|+.|..++.+|+++|. +. .-+.+|++||++||-|+....|.
T Consensus 36 ~ipv~vi~~~~-----gp~v~i~agvHGdE~~G~~~~~~L~~~l~------~~----~l~G~v~~vP~~N~~g~~~~~r~ 100 (325)
T TIGR02994 36 MIPITVIKNGI-----GPTALLTGGNHGDEYEGPIALFELARTLD------AE----DVSGRIIIVPAMNYPAFRAGTRT 100 (325)
T ss_pred EeeEEEEeCCC-----CCEEEEEeccCCCchHHHHHHHHHHhhCC------hh----hCcEEEEEEcCCCHHHHHhhCCC
Confidence 45555554333 48999999999999999999999999883 21 13588999999999999999998
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-hc--ceeEEEecCCCcee---cccCCCC-C---CCHHHHHH
Q 037202 92 NA-NNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVR-QI--HFTASASLHGVISL---IQRYYYG-C---PDDEAFQF 160 (393)
Q Consensus 92 N~-~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~-~~--~~~~~idlHsg~~~---~p~~y~~-~---pd~~~~~~ 160 (393)
++ +|.||||.||. .+..++ ++.++.++. +. ..++.||||+++.. +|+.+.. . ..++..+.
T Consensus 101 ~p~d~~nlNR~fPG--------~~~gs~-~~riA~~l~~~l~~~aD~~iDlHs~~~~~~~~P~v~~~~~~~~~~~~~~~~ 171 (325)
T TIGR02994 101 SPIDRGNLNRSFPG--------RPDGTV-TEKIADYFQRHLLPLADIVLDFHSGGKTLDFVPFAAAHILPDKAQEAKCFD 171 (325)
T ss_pred CCCCCCccCCCCCC--------CCCCCH-HHHHHHHHHHhHHhhCCEEEECCCCCccccccceEEEecCCcchhhHHHHH
Confidence 87 89999999996 233333 666666664 32 78999999998753 4443322 1 12344556
Q ss_pred HHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 037202 161 LASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVAS 240 (393)
Q Consensus 161 la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~ 240 (393)
||+.++.. |.... .....|++-|++....+++++|+|+|+......+.+... ..++++++..
T Consensus 172 lA~~fg~p---------~~~~~-----~~~~~~gs~~~a~~~~Gip~i~~E~Gg~~~~~~~~~~~~----~~gi~~vL~~ 233 (325)
T TIGR02994 172 AVAAFAAP---------YSMKM-----LEIDSVGMYDTAAEEMGKVFVTTELGGGGTASARTIKIA----KRGVRNVLRH 233 (325)
T ss_pred HHHhcCCC---------eEEEe-----ccCCCCccHHHHHHHCCCeEEEEeCCCCCcCCHHHHHHH----HHHHHHHHHH
Confidence 66655321 11000 011245677777778899999999999876666555554 4458888753
Q ss_pred hhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCC
Q 037202 241 LVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPG 288 (393)
Q Consensus 241 ~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG 288 (393)
..-+.|.+ .+.. ..+.+......+.+ +..|.|.....+|
T Consensus 234 --lgml~~~~------~~~~~~~~~~~~~~~~v~A-p~~Gi~~~~v~~G 273 (325)
T TIGR02994 234 --AGILKGEL------EIAPTIWLDMPSDDCFIFA-EDDGLIEFMIDLG 273 (325)
T ss_pred --cCCcCCCC------CCCCccceecCCCCeEEEc-CCCeEEEEecCCC
Confidence 11122222 1111 11111221222334 4788888777777
No 53
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.79 E-value=4e-18 Score=164.44 Aligned_cols=230 Identities=21% Similarity=0.189 Sum_probs=136.2
Q ss_pred ceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCccccccccc
Q 037202 11 FPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRR 90 (393)
Q Consensus 11 r~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R 90 (393)
-.|.+..|... ++.|+++|+||+||||+.|..++.+|+++|- +. .-+.+++++|++||.|++...|
T Consensus 4 ~~~pv~~~~g~----~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~------~~----~~~g~v~~vp~~N~~a~~~~~r 69 (288)
T cd06254 4 LAIPVTLINGV----NPGPTLAITAGVHGGEYPGIQALQKLAREID------PA----KLSGTLIIVHVLNLSGFYARTP 69 (288)
T ss_pred ccccEEEEeCC----CCCCEEEEEecccCCchhHHHHHHHHHHhCC------cc----cCeEEEEEEeCcCHHHHHhcCc
Confidence 35666777554 2359999999999999999999999998872 21 1267899999999999998877
Q ss_pred C-C-CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc---ceeEEEecCCCcee---cccCCCCCCCHHHHHHHH
Q 037202 91 G-N-ANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI---HFTASASLHGVISL---IQRYYYGCPDDEAFQFLA 162 (393)
Q Consensus 91 ~-N-~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~---~~~~~idlHsg~~~---~p~~y~~~pd~~~~~~la 162 (393)
. + .+|.||||+||.... ..+++.++.++.+. +.++.+|||+++.. .|+.+....++...+..+
T Consensus 70 ~~~~~d~~dlNR~fpg~~~---------g~~~~r~a~~~~~~~~~~~d~~iDlHs~~~~~~~~p~~~~~~~~~~~~~~~~ 140 (288)
T cd06254 70 YIVPEDGKNLNRVFPGDKD---------GTLTERIAYFLTEEVIDKADFLIDLHSGDGNEQLRPYVYYPVTGDEDVRTAS 140 (288)
T ss_pred ccCCCCCCchhhcCCCCCC---------CCHHHHHHHHHHHHHHhhCcEEEECCCCCCccccCceEEecCCcchhhhHHH
Confidence 4 3 489999999997422 23455555555442 78999999997632 566544332222222222
Q ss_pred HHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhh
Q 037202 163 SVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLV 242 (393)
Q Consensus 163 ~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~ 242 (393)
...+... ...+..... +..|++..|+ ...+++++|+|+|.......+.+ +....++++++..
T Consensus 141 ~~~a~~~-----~~~~i~~~~------~~~~~~~~~a-~~~G~~a~tiE~G~~~~~~~~~~----~~~~~gi~~~L~~-- 202 (288)
T cd06254 141 LAAAFGI-----DHIIIYRSR------DRSGGSYNYA-ATRGIPAILLERGGLGTCDAEDV----EAYKDDIYNVLRH-- 202 (288)
T ss_pred HHHHhCC-----CCeEEecCC------CCCccHHHHH-HHcCCcEEEEECCCCCCCCHHHH----HHHHHHHHHHHHH--
Confidence 2222111 000100000 0112322232 46699999999998654444333 4455668888864
Q ss_pred hcceeeEEeecCCCCCCcceEEEeceeeeeeeecCceeEEeecCCC
Q 037202 243 KTGVRGRIFSSDSGRPLPGSITIKGINYTVNAGRAFADYYRLLTPG 288 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~a~V~v~g~~~~~~t~~~~G~y~r~l~pG 288 (393)
..-++|.. ...|... +.+.+. ..+.+ +..|.|.....+|
T Consensus 203 lg~l~~~~----~~~~~~~-~~~~~~-~~v~A-p~~G~~~~~~~~G 241 (288)
T cd06254 203 LGMLEGKK----PPEEVPI-PEIDDV-YYVTS-PASGLWYPFVKAG 241 (288)
T ss_pred cCCccCCC----CCCCCCc-eeccCC-EEEec-CCCeEEEEecCCC
Confidence 11233321 1112111 222222 22334 4788887777787
No 54
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.78 E-value=7.3e-18 Score=164.59 Aligned_cols=230 Identities=17% Similarity=0.139 Sum_probs=141.4
Q ss_pred CceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccc
Q 037202 10 GFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKR 89 (393)
Q Consensus 10 gr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~ 89 (393)
.-.|.+..|..+. .|+++|+||+||||+.|..++.+|+++|. +. .-+.+++++|++||.|++...
T Consensus 21 ~~~iPv~v~~g~~-----gp~v~I~aGiHGdE~~G~~~~~~L~~~l~------~~----~l~G~vi~vP~~Np~a~~~~~ 85 (316)
T cd06252 21 TVMIPITVIKNGD-----GPTVLLTGGNHGDEYEGQIALLRLARRLD------PE----EVRGRVIILPALNFPAVQAGT 85 (316)
T ss_pred ceEeeEEEEeCCC-----CCEEEEEccCCCCchHHHHHHHHHHHhCC------hh----hCeEEEEEEeCCCHHHHHhcc
Confidence 3567777776543 48999999999999999999999999883 21 126799999999999999999
Q ss_pred cCCC-CCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-hc--ceeEEEecCCCcee---cccCCCC-CCC---HHHH
Q 037202 90 RGNA-NNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVR-QI--HFTASASLHGVISL---IQRYYYG-CPD---DEAF 158 (393)
Q Consensus 90 R~N~-~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~-~~--~~~~~idlHsg~~~---~p~~y~~-~pd---~~~~ 158 (393)
|.++ +|.||||.||.. +..+.| +.++.++. +. +.++.+|||+++.. .|+.+.. ..| .+..
T Consensus 86 R~~p~D~~DLNR~Fpg~--------~~gs~~-~riA~~i~~~l~~~aD~~iDLHt~~~~~~~~p~~~~~~~~~~~~~~~~ 156 (316)
T cd06252 86 RTSPIDGGNLNRVFPGD--------PDGTVT-EMIAHYLTTELLPRADYVIDLHSGGRSLDFLPFALMHRLPDPEQEARC 156 (316)
T ss_pred ccCCCCCCcHHhhCCCC--------CCCCHH-HHHHHHHHHhhhhcCcEEEEccCCCCccccCCeEEeeccCChhhhHHH
Confidence 9987 789999999973 222333 34444444 33 78999999998643 2443322 122 3445
Q ss_pred HHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHH
Q 037202 159 QFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLV 238 (393)
Q Consensus 159 ~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~ 238 (393)
++||+.+... +..-... ...+++.+......+++++|+|+|+.....++.+. ....++++++
T Consensus 157 ~~la~~~~~~---------~il~~~~-----~~~~g~~~~~a~~~G~~~itiE~G~~~~~~~~~~~----~~~~gi~~~L 218 (316)
T cd06252 157 LAAARAFGAP---------YTLLMRE-----IDEAGTFDAAAERLGKTFVSTELGGGGTVTPDAVA----IAERGVRNVL 218 (316)
T ss_pred HHHHHHhCCC---------EEEEecC-----CCCcccHHHHHHHCCCcEEEEeCCCCCccCHHHHH----HHHHHHHHHH
Confidence 6666654321 1000000 01123333333456899999999986655444444 3455577777
Q ss_pred HhhhhcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCC
Q 037202 239 ASLVKTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPG 288 (393)
Q Consensus 239 ~~~~~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG 288 (393)
.. ..-+.|.. ...|.. ..+.+......+.+ +..|.|.....+|
T Consensus 219 ~~--lg~l~~~~----~~~~~~~~~~~~~~~~~~v~A-~~~G~~~~~~~~G 262 (316)
T cd06252 219 IH--LGILDGDP----DAPPEATRALDVPDARCYVFA-PHPGLFEPLVDLG 262 (316)
T ss_pred HH--cCCccCCC----CCCCCCcceEEecCCcEEEEc-CCCeEEEEecCCC
Confidence 53 11233332 111211 22333322223344 4789888888887
No 55
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.77 E-value=9.1e-18 Score=162.20 Aligned_cols=240 Identities=19% Similarity=0.238 Sum_probs=145.6
Q ss_pred eeeeCCCce--EEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccC
Q 037202 4 IGKSVSGFP--LWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMN 81 (393)
Q Consensus 4 iG~S~egr~--i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~N 81 (393)
+++...|.+ |.+..|... ++.|+++++||+||||..|.+++.+|+++|.. . .-+.+++++|++|
T Consensus 2 ~~~~~~g~~~~~pv~~~~g~----~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~------~----~~~g~~~~vp~~N 67 (293)
T cd06255 2 VGTMADGSAVALPVTILRGA----EPGPTLWLHAQVHGNEYNGTQAIVDLYRSLDP------A----ALKGRLVALPTAN 67 (293)
T ss_pred cccCCCCCccceeEEEEeCC----CCCCEEEEEcccCCCcHHHHHHHHHHHHhCCH------h----hcCCeEEEEeCcC
Confidence 455566665 566777554 23499999999999999999999999998732 1 1246889999999
Q ss_pred cccccccccCCC-CCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhcceeEEEecCCCceec-cc-CCCCC--CCHH
Q 037202 82 PDGYALKRRGNA-NNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQIHFTASASLHGVISLI-QR-YYYGC--PDDE 156 (393)
Q Consensus 82 PDG~~~~~R~N~-~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~~-p~-~y~~~--pd~~ 156 (393)
|+|++...|.|+ ++.||||.||.. .+...++..+.++.+-+. ...++.||||+++... ++ .+... ...+
T Consensus 68 ~~a~~~~~R~~p~d~~dlNR~fpg~-----~~g~~~~r~A~~~~~~~~-~~~d~~iDlHs~~~~~~~~~v~~~~~~~~~~ 141 (293)
T cd06255 68 PTALDARTRMSPFDELDLNRTFPGN-----PNGMVTQQMAHALFEEVR-GVADYLVDLHTMTTISKRYTVYKVYPGVTEE 141 (293)
T ss_pred HHHHHhhcccCCCCCCCcccCCCCC-----CCCCHHHHHHHHHHHHHH-hcCCEEEECCCCCCCCCCCeEEecCCccccH
Confidence 999999999998 999999999962 112233334444433332 2679999999986431 11 11111 1245
Q ss_pred HHHHHHHHHHHHhccccCCCccccceeccceeEecCCCccccccccCC-ceEEEEEecCCCCCCCCChHHHHHHHHHHHH
Q 037202 157 AFQFLASVYSRSHYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGG-CFELTLEISDDKWPSAEELPTIWEYNKMSML 235 (393)
Q Consensus 157 ~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~-~~~~T~El~~~~~p~~~~i~~~~~~~~~sll 235 (393)
...+||+.++.....+ ..+.... ...|++...+ ...+ ++++|+|+|......++.+... ..+++
T Consensus 142 ~~~~lA~~fg~~~~~~------~~~~~~~----~~~g~~~~~a-~~~g~ipait~E~G~~~~~d~~~~~~~----~~GI~ 206 (293)
T cd06255 142 NLERMTRAFGSKLYRP------DVGGKGE----LLPGNIAGVL-DYQCLVPAFMVELGGGGPYQPENVERA----ATGLR 206 (293)
T ss_pred HHHHHHHHcCCCEEee------ccCCCCC----cCCccHHHHH-HHCCCCcEEEEeCCCCccCCHHHHHHH----HHHHH
Confidence 5667777765321000 0000000 0124433333 4456 9999999999876655555544 45588
Q ss_pred HHHHhhhhcceeeEEeecCCCCCCcceEEEeceeeeeeeecCceeEEeecCCC
Q 037202 236 NLVASLVKTGVRGRIFSSDSGRPLPGSITIKGINYTVNAGRAFADYYRLLTPG 288 (393)
Q Consensus 236 ~l~~~~~~~Gi~G~V~d~~~g~Pi~a~V~v~g~~~~~~t~~~~G~y~r~l~pG 288 (393)
+++.. ..-+.|.+ ....|.. ..+ + ...+.+ +..|.|.....+|
T Consensus 207 ~vL~~--lgml~~~~---~~~~~~~--~~~-~-~~~v~A-p~~Gi~~~~~~~G 249 (293)
T cd06255 207 NMLRH--LGILDGEV---EDHAPAP--AFV-S-RDWVAA-IHGGLFEPSVPAG 249 (293)
T ss_pred HHHHH--CCCccCCC---ccCCCCC--eee-e-eEEEec-CCCeEEEEecCCC
Confidence 88753 12234432 0112221 112 1 222344 4789998888888
No 56
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.76 E-value=6.5e-18 Score=160.53 Aligned_cols=170 Identities=22% Similarity=0.266 Sum_probs=118.9
Q ss_pred CCceEEEEEEeCCCCCCCCCCEEEEEeccCCCC-hhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccc
Q 037202 9 SGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDE-PVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYAL 87 (393)
Q Consensus 9 egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E-~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~ 87 (393)
+--+|.++.|+.. .++|.++++||+||.| ++|+.+++.+++++.. ..+..++.|++||++||+||..
T Consensus 36 ~~l~i~v~~~g~~----~~~~~l~i~sGvHG~Eg~~Gs~~~~~ll~~~~~--------~~~~~~~~vi~vh~vNP~Gf~~ 103 (283)
T cd06233 36 EALAIDVARLGPA----DAKRLLVITSGTHGVEGFCGSAIQLALLRELLP--------RSLPAGVAVLLVHALNPYGFAH 103 (283)
T ss_pred ceeeeeEEEEcCC----CCCcEEEEEecccCCcccchHHHHHHHHHhcch--------hhccCCceEEEEeCcCHHHHhh
Confidence 3446888888775 3467999999999999 8999999999998743 2455678999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCC-------------------------------------------------------
Q 037202 88 KRRGNANNIDLNRDFPDQFFPMNND------------------------------------------------------- 112 (393)
Q Consensus 88 ~~R~N~~gvDLNRNfp~~w~~~~~~------------------------------------------------------- 112 (393)
..|.|.+||||||||-+...+.+.+
T Consensus 104 ~~R~nedgvDLNRnf~d~~~~~p~N~~Y~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~G~~a~~~A~~~GQY~~P~Glfy 183 (283)
T cd06233 104 LRRVNENNVDLNRNFLDFSAPLPENPGYAELHPLLLPPRWPPAAAAFAAKLLAYILKHGEKALKQALSGGQYTHPDGLFY 183 (283)
T ss_pred cccCCCCCCChhhcccccCCCCCCCccHHHHhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccc
Confidence 9999999999999996654332100
Q ss_pred -CCCChHHHHHHHHHHHhc----ceeEEEecCCCceecccCCC-----CCCCHHHHHHHHHHHHHHhccccCCCccccce
Q 037202 113 -EEACQPETRAIMSWVRQI----HFTASASLHGVISLIQRYYY-----GCPDDEAFQFLASVYSRSHYNMSLSTEFQGGI 182 (393)
Q Consensus 113 -~~~sepEt~ai~~~~~~~----~~~~~idlHsg~~~~p~~y~-----~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~ 182 (393)
+...+..++.++++++++ .-+++||+|+|.+- |.+. ..+++..+..+.+.++..... .+. +
T Consensus 184 GG~~p~wS~~~L~~il~~~~~~~~~v~~iD~HTGlGp--~g~~~~i~~~~~~~~~~~~a~~~~g~~~~~-----~~~-~- 254 (283)
T cd06233 184 GGTAPQWSNRTLREILRRHLAGAERVAWIDVHTGLGP--WGYGELIFLGPDEDGALERARRWWGSSVTL-----PAA-G- 254 (283)
T ss_pred CCCCccHHHHHHHHHHHHhcccccEEEEEEeCCCCCC--CCCCeEEEecCCccHHHHHHHHHhCccccc-----ccC-C-
Confidence 234456677777777775 67899999998753 3321 222334555555555432211 111 1
Q ss_pred eccceeEecCCCccccccc
Q 037202 183 INGASWYPIYGGMQDWNYI 201 (393)
Q Consensus 183 ~~~~~~y~~~G~~~Dw~y~ 201 (393)
...-|...|.+.+|...
T Consensus 255 --~~~~~~~~G~~~~~~~~ 271 (283)
T cd06233 255 --TSVSYDVTGLLGDALLA 271 (283)
T ss_pred --CccccccCCcHHHHHHH
Confidence 11346678888887764
No 57
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=99.74 E-value=4e-17 Score=159.32 Aligned_cols=204 Identities=23% Similarity=0.255 Sum_probs=145.6
Q ss_pred eeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCC-hhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcc
Q 037202 5 GKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDE-PVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPD 83 (393)
Q Consensus 5 G~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E-~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPD 83 (393)
|..-|.-.+.++.++.. ..+..+++++|.||-| .+|+.+...+++.... ..+.+++.|.+|..+||.
T Consensus 32 G~~ge~L~~Dva~lg~~----~a~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~~--------~~~~~~~avllVHAlNPy 99 (341)
T PF10994_consen 32 GPDGEDLATDVAWLGPK----DASRLLVLTSGTHGVEGFAGSAIQIALLREDLA--------RSLPAGVAVLLVHALNPY 99 (341)
T ss_pred CCCCCcceeEEEEecCC----CCCeEEEEEecCCcccccccHHHHHHHHHcccc--------cccCCCCeEEEEEccCcc
Confidence 44556667788999876 3456889999999999 9999999999988622 456678999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCC---------------------------------------------------
Q 037202 84 GYALKRRGNANNIDLNRDFPDQFFPMNND--------------------------------------------------- 112 (393)
Q Consensus 84 G~~~~~R~N~~gvDLNRNfp~~w~~~~~~--------------------------------------------------- 112 (393)
||.+..|.|.+||||||||-+...+.+.+
T Consensus 100 Gfa~~RR~nE~NVDLNRNfldf~~~~p~N~~Y~~l~~~l~p~~~~~~~~~~~~~~l~~~~~~~G~~a~~~av~~GQY~~P 179 (341)
T PF10994_consen 100 GFAWLRRVNENNVDLNRNFLDFSQPLPANPGYEELHPLLNPSDWPPPADAAAFAALAKYIARHGFAAFKQAVSGGQYTHP 179 (341)
T ss_pred ccceeeccCCcCcCcccccCcccCCCCCCccHHHHHHhhCCCCCCchhhHHHHHHHHHHHHHHhHHHHHHHHhCcCcCCC
Confidence 99999999999999999996433221100
Q ss_pred ------CCCChHHHHHHHHHHHhc----ceeEEEecCCCceecccC---CCCCCCHHHHHHHHHHHHHHhccccCCCccc
Q 037202 113 ------EEACQPETRAIMSWVRQI----HFTASASLHGVISLIQRY---YYGCPDDEAFQFLASVYSRSHYNMSLSTEFQ 179 (393)
Q Consensus 113 ------~~~sepEt~ai~~~~~~~----~~~~~idlHsg~~~~p~~---y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~ 179 (393)
+...+...+.++++++++ +-+++||+|+|.+-+-+. +...++....+.+.+.|+..... .+.
T Consensus 180 ~GlfYGG~~p~wS~~~L~~il~~~~~~~~~v~~iDlHTGlGp~G~~~~i~~~~~~~~~~~~a~~~~g~~v~~-----~~~ 254 (341)
T PF10994_consen 180 DGLFYGGTEPEWSNRTLREILREHLAGAERVAWIDLHTGLGPYGHGELICDGPPDSAALERARRWWGPDVTS-----PYD 254 (341)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCCCCceEEEecCCCChHHHHHHHHHhCcceee-----ccC
Confidence 334566788888888876 678999999987532221 12334667777777766553311 122
Q ss_pred cceeccceeEecCCCccccccc---cCCceEEEEEecCCCCCCCCChHHHHHHHH
Q 037202 180 GGIINGASWYPIYGGMQDWNYI---YGGCFELTLEISDDKWPSAEELPTIWEYNK 231 (393)
Q Consensus 180 ~g~~~~~~~y~~~G~~~Dw~y~---~~~~~~~T~El~~~~~p~~~~i~~~~~~~~ 231 (393)
+ ...-|+..|.+.++.+. ......+++|+|. +|....+..+..||+
T Consensus 255 g----~~~s~~~~G~~~~~~~~~~~~~~~~~~~~EfGT--~~~~~v~~alr~enw 303 (341)
T PF10994_consen 255 G----TSVSYDITGLLIDAWAELLPDAEYTPITLEFGT--YPGLEVLRALRAENW 303 (341)
T ss_pred C----CCcccccCCcHHHHHHHHcCCCceeEEEEEeCC--CCHHHHHHHHHHHHH
Confidence 2 12447889999999874 3458889999974 555555555555554
No 58
>COG3608 Predicted deacylase [General function prediction only]
Probab=99.71 E-value=3.7e-16 Score=149.93 Aligned_cols=197 Identities=21% Similarity=0.228 Sum_probs=127.4
Q ss_pred EEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCC
Q 037202 14 WVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNA 93 (393)
Q Consensus 14 ~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~ 93 (393)
.++.+++++| |+++++|+.||||..|..++.+|+++| |+.. =..+|+|||.+||-+++...|.++
T Consensus 39 ~~~~~~~g~g-----p~~~l~ag~HGdEl~G~~al~~Li~~L------~~a~----i~GtV~iVP~aN~~a~~~~~R~~p 103 (331)
T COG3608 39 PVFVFGNGPG-----PSVLLQAGVHGDELPGVIALRRLIPAL------DPAD----ISGTVIIVPIANPPAFEAQGRFSP 103 (331)
T ss_pred eEEEecCCCC-----CEEEEEecccccccchHHHHHHHHHhc------CHhh----cCceEEEEeccCHHHHHhhcccCC
Confidence 4455566654 999999999999999999999999999 3321 258999999999999999999988
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc---ceeEEEecCCCceecccC-CCCCCCHHHHHHHHHHHHHH
Q 037202 94 -NNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI---HFTASASLHGVISLIQRY-YYGCPDDEAFQFLASVYSRS 168 (393)
Q Consensus 94 -~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~---~~~~~idlHsg~~~~p~~-y~~~pd~~~~~~la~~~~~~ 168 (393)
.+.|+||+||.. ....-|.++.++++++ ..|+.+|||+++....+. |-.+...+..+.+++++...
T Consensus 104 ~d~~N~NR~fPg~---------~dgs~t~ria~~l~r~L~~~aD~VlDlHsg~~~~~~~~~i~~~~~p~~~~~a~al~~~ 174 (331)
T COG3608 104 GDDTNLNRAFPGR---------PDGSATERIADRLKRLLLPLADIVLDLHSGGEGLDYLPYILAHEIPDIASLAKALAIA 174 (331)
T ss_pred CCCCcccccCCCC---------CCCCHHHHHHHHHHHhhhcccCEEEEccCCCCcccccceeccccCCcHHHHHHHHHHH
Confidence 899999999941 1233456667777554 689999999988543332 32222222233334333322
Q ss_pred hccccCCCccccceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcceee
Q 037202 169 HYNMSLSTEFQGGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVASLVKTGVRG 248 (393)
Q Consensus 169 ~~~m~~~~~y~~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~~~~~Gi~G 248 (393)
..- +..|.....+ ...-++.+=.....+++++|.|++.+.--.++.+ +....+|++++.. .|
T Consensus 175 ~~f---~~~~~~~~~~-----~~~~g~l~~~~~~~gi~~iT~E~gg~g~v~~~~i----~~~~~gi~n~L~~------~G 236 (331)
T COG3608 175 AAF---GSPYSVIFDE-----ADADGMLRTAAERAGIPVITVELGGAGDVDAESI----EIAAEGILNFLRH------RG 236 (331)
T ss_pred HHh---cCCcceeecc-----cCchhHHHHHHHHcCCcEEEeeecCccccCHHHH----HHHHHHHHHHHHH------hC
Confidence 110 1111110000 0111223333356789999999998764444444 4455669999863 67
Q ss_pred EEee
Q 037202 249 RIFS 252 (393)
Q Consensus 249 ~V~d 252 (393)
.|..
T Consensus 237 il~g 240 (331)
T COG3608 237 ILAG 240 (331)
T ss_pred eecC
Confidence 7743
No 59
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=99.70 E-value=6.4e-17 Score=156.26 Aligned_cols=185 Identities=21% Similarity=0.155 Sum_probs=121.9
Q ss_pred CCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCC-CCCCCCCCCCCCC
Q 037202 28 EPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNA-NNIDLNRDFPDQF 106 (393)
Q Consensus 28 kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~-~gvDLNRNfp~~w 106 (393)
.|+++|+||+||||+.|..++.+|+++|.... -..+++++|++||.|+....|... +|.||||.||...
T Consensus 2 Gp~l~i~agvHGnE~~G~~a~~~L~~~l~~~~----------~~G~~~~vp~~N~~a~~~~~R~~~~d~~dLNR~Fpg~~ 71 (292)
T PF04952_consen 2 GPTLLITAGVHGNEYNGIEALQRLLRELDPAD----------LSGTVIIVPVANPPAFRQGTRFVPIDGRDLNRCFPGDA 71 (292)
T ss_dssp S-EEEEEE-SSTTBCHHHHHHHHHHHHHHGGG----------CTCEEEEEEESSHHHHHHTSSSSTTTSSBGGGSTTHHH
T ss_pred CCEEEEEcCcccChHHHHHHHHHHHhcchhcc----------cCCceEEEEEeCHHHHHhccccCCCCCCCHHHhCCCCc
Confidence 38999999999999999999999999985421 357999999999999999999988 8999999999632
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhc---ceeEEEecCCCcee---cccCCCCC-CCHHHHHHHHHHHHHHhccccCCCccc
Q 037202 107 FPMNNDEEACQPETRAIMSWVRQI---HFTASASLHGVISL---IQRYYYGC-PDDEAFQFLASVYSRSHYNMSLSTEFQ 179 (393)
Q Consensus 107 ~~~~~~~~~sepEt~ai~~~~~~~---~~~~~idlHsg~~~---~p~~y~~~-pd~~~~~~la~~~~~~~~~m~~~~~y~ 179 (393)
.+..........+++.++..+.+. +.++.+|||+++.. .++.+... ++.....++|+.+... +.
T Consensus 72 ~~~~~~~~~~~~~~~~ia~~l~~~~~~~aD~~iDLHs~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~ 142 (292)
T PF04952_consen 72 LGSSLQEDYEATETERIAHALFEEILPDADYVIDLHSGSSSSDHPPFVRYPENDDEAQLLALARAFGAP---------AV 142 (292)
T ss_dssp HCHCTTHHHHHHHHHHHHHHHHHTTCCCGSEEEEEEEESSTBEEEEEEEEECGSSHHHHHHHHHHHTTS---------EE
T ss_pred cccccccccchhHHHHHHHHHhhhhhccceEEEEeccCCCCCccceEEEecccchhhHhhhhHHHcCCC---------eE
Confidence 221111112235777888877754 78999999997632 34443333 3333335555544221 11
Q ss_pred cceeccceeEecCCCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 037202 180 GGIINGASWYPIYGGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVAS 240 (393)
Q Consensus 180 ~g~~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~~ 240 (393)
..... ...+++........+++++|+|+|......++.+.. ...++++++..
T Consensus 143 ~~~~~-----~~~~~~~~~~~~~~g~~a~tvE~G~~~~~~~~~~~~----~~~~i~~~L~~ 194 (292)
T PF04952_consen 143 LILDE-----DGTGGTLRSAANRAGIPAVTVELGGGGDFDEEAVEQ----AVDGILNVLRH 194 (292)
T ss_dssp EEEES-----SHCSSHHHHHHHHCSSEEEEEEEEETTTTTHHHHHH----HHHHHHHHHHH
T ss_pred EEEee-----CCCccchhHHHHhcCCeEEEEEeCCCCCCCHHHHHH----HHHHHHHHHHH
Confidence 00000 012344555556779999999999875444444443 44457777764
No 60
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.67 E-value=7.6e-16 Score=145.86 Aligned_cols=117 Identities=25% Similarity=0.258 Sum_probs=84.5
Q ss_pred EEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 037202 31 FKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFPMN 110 (393)
Q Consensus 31 v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~ 110 (393)
++|+||+||||+.|.+++..|++++.... .-+.+++++|++||+|++...|.+. .||||+||..-.
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~---------~l~g~v~~vp~~N~~g~~~~~R~~~--~DLNR~fpg~~~--- 66 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ---------ALRGPVKLVPAANPLALEAGQRYLD--RDLNRIFPGDPD--- 66 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc---------ccccEEEEEeCcCHHHHHhCCCCCC--cCCCCCCCCCCC---
Confidence 57999999999999999999999985421 2357899999999999999999987 999999996321
Q ss_pred CCCCCChHHHHHHHHHHHhc--ceeEEEecCCCcee-cccCCCCCCCHHHHHHHHHHHH
Q 037202 111 NDEEACQPETRAIMSWVRQI--HFTASASLHGVISL-IQRYYYGCPDDEAFQFLASVYS 166 (393)
Q Consensus 111 ~~~~~sepEt~ai~~~~~~~--~~~~~idlHsg~~~-~p~~y~~~pd~~~~~~la~~~~ 166 (393)
...+|.+....+.+.+ ..++.+|||++... .|+.+... .++..+.+|+.++
T Consensus 67 ----~~~~~~~~a~~l~~~i~~~~d~~iDlH~~~~~~~~~~~~~~-~~~~~~~la~~~~ 120 (252)
T cd06230 67 ----SGTYEDRLAAELCPELEGLADAVLDLHSTSSEGPPFILVGD-HDEENRALALALG 120 (252)
T ss_pred ----CCCHHHHHHHHHHHHHhhhccEEEECCCCCCCCCCEEEEcC-CCHHHHHHHHHcC
Confidence 1345555554444444 37999999998763 23333322 2245566666554
No 61
>PRK02259 aspartoacylase; Provisional
Probab=99.52 E-value=1.3e-13 Score=132.91 Aligned_cols=100 Identities=20% Similarity=0.121 Sum_probs=74.4
Q ss_pred CEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCC
Q 037202 29 PAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFP 108 (393)
Q Consensus 29 p~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~ 108 (393)
++|+++||+||||+.|.+++.++++++... . -....+++|++||.|++...|... .||||.||....+
T Consensus 3 ~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~--------~--~~g~~i~~~i~Np~A~~~~~Ry~~--~DLNR~Fpg~~~~ 70 (288)
T PRK02259 3 NRVAIVGGTHGNEITGIYLVKKWQQQPNLI--------N--RKGLEVQTVIGNPEAIEAGRRYID--RDLNRSFRLDLLQ 70 (288)
T ss_pred cEEEEEcCccCChhHHHHHHHHHHhccccc--------c--cCccEEEEEeeCHHHHHhCCCCCc--ccCCCCCCCcccc
Confidence 689999999999999999999888876321 0 134578899999999999999764 7999999975432
Q ss_pred CCCCCCCChHHHHHHHHHHHhc------ceeEEEecCCCce
Q 037202 109 MNNDEEACQPETRAIMSWVRQI------HFTASASLHGVIS 143 (393)
Q Consensus 109 ~~~~~~~sepEt~ai~~~~~~~------~~~~~idlHsg~~ 143 (393)
. ...+.+|.+....+.... +.++.+|||+++.
T Consensus 71 ~---~~~~~~e~~~A~~l~~~~~~~~~~~~D~~iDLHttts 108 (288)
T PRK02259 71 N---PDLSGYEQLRAKELVQQLGPKGNSPCDFIIDLHSTTA 108 (288)
T ss_pred C---CCCCCHHHHHHHHHHHHHhhccCccCcEEEECCCCCC
Confidence 1 112345555555554443 7899999999753
No 62
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.51 E-value=2.1e-13 Score=130.61 Aligned_cols=99 Identities=19% Similarity=0.103 Sum_probs=71.2
Q ss_pred CEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCC
Q 037202 29 PAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFP 108 (393)
Q Consensus 29 p~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~ 108 (393)
++|+|+||+||||..|..++..+++.+... ......+++|+.||.+++...|.+ ..||||.||....+
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~----------~~~~~~v~~~i~Np~A~~~~~Ry~--d~DLNR~Fpg~~~~ 68 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPELI----------QRPSLEVHPVIANPRAVEACRRYI--DTDLNRCFTLENLS 68 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccccc----------ccCCeEEEEEecCHHHHHhCCccC--CCCCCCCCCCCccC
Confidence 469999999999999999999888876321 123445667778999999999986 58999999975543
Q ss_pred CCCCCCCChHHHHHHHHHHHhc------ceeEEEecCCCc
Q 037202 109 MNNDEEACQPETRAIMSWVRQI------HFTASASLHGVI 142 (393)
Q Consensus 109 ~~~~~~~sepEt~ai~~~~~~~------~~~~~idlHsg~ 142 (393)
.+ ..+.+|.+....+.... +.++.+|||++.
T Consensus 69 ~~---~~~~~e~~~A~~l~~~l~~~~~~~~D~~iDLHstt 105 (282)
T cd06909 69 NS---ELLPYEVKRAKELNQKLGPKGNSPCDFVIDLHNTT 105 (282)
T ss_pred CC---CCCCHHHHHHHHHHHHHhhccCCCceEEEECCCCC
Confidence 21 12234544444444433 489999999974
No 63
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.49 E-value=2.9e-13 Score=132.22 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=96.0
Q ss_pred CEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCC
Q 037202 29 PAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFP 108 (393)
Q Consensus 29 p~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~ 108 (393)
|+++|+||+||||+.|..++.++++++.. . . +... .+++++||-|++...|....|.||||.||....
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~~------~--~-~~~~--~~l~i~Np~A~~~~~R~~~d~~DLNR~Fpg~~~- 102 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALEA------R--P-LPRS--LLLFIGNVAAALAGVRRLDGQPDYNRCWPGPYD- 102 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCCh------h--h-cCCc--EEEEEeCHHHHHhCcccCCCCCCccCCCCCCCC-
Confidence 89999999999999999999999988732 1 1 2223 445579999999999998889999999996321
Q ss_pred CCCCCCCChHHHHHHHHHHHhcceeEEEecCCCceec-ccCCCCCCCHHHHHHHHHHHHHHhccccCCCccccceeccce
Q 037202 109 MNNDEEACQPETRAIMSWVRQIHFTASASLHGVISLI-QRYYYGCPDDEAFQFLASVYSRSHYNMSLSTEFQGGIINGAS 187 (393)
Q Consensus 109 ~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~~~~-p~~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~~~~~ 187 (393)
...+..++.+.+.+.+...++.||||++.... ++..... .++...+||..+...+.
T Consensus 103 -----s~e~r~A~~l~~~l~~~~~d~~IDLHstt~~~~~~~i~~~-~d~~~~~LA~~f~~~~i----------------- 159 (327)
T cd06256 103 -----DPEGRLAEEVLELLADERPEASIDIHNNTGSNPHYGCVNR-LDAPHLALASLFSRTLV----------------- 159 (327)
T ss_pred -----CHHHHHHHHHHHHHHhcCCcEEEECCCCCCCCCCEEEECC-CChHHHHHHHhcCCCEE-----------------
Confidence 12233344444444444568999999875332 2222222 23445577765432110
Q ss_pred eEecCCCccccccccCCceEEEEEecCCC
Q 037202 188 WYPIYGGMQDWNYIYGGCFELTLEISDDK 216 (393)
Q Consensus 188 ~y~~~G~~~Dw~y~~~~~~~~T~El~~~~ 216 (393)
+.....+..-. +...+++++|+|+|...
T Consensus 160 ~~~~~~g~~~~-~~~~~~p~vtiE~G~~~ 187 (327)
T cd06256 160 YFTLPLGVLSE-ASARLCPAVTLECGGAG 187 (327)
T ss_pred EecCCCchHHH-HHHcCCCEEEEccCCCC
Confidence 11111122222 23446779999999763
No 64
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.46 E-value=5.6e-13 Score=127.60 Aligned_cols=119 Identities=21% Similarity=0.091 Sum_probs=81.9
Q ss_pred CEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCC-----CCCCCCCCC
Q 037202 29 PAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNAN-----NIDLNRDFP 103 (393)
Q Consensus 29 p~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~-----gvDLNRNfp 103 (393)
|+++|+|++||||+.|.+++.+|++. ++ .. + +.+++++ ++||.+|....|.++. +.||||.||
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~-------~~--~~-l-~G~li~~-~~N~~A~~~~~~~~p~~~R~~~~dLNR~Fp 68 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE-------GL--RP-R-RGRLTLA-FANVAAYARFDPNNPTASRFVDEDMNRVWS 68 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC-------cc--cc-c-CCCEEEE-EECHHHHHhcccCCCcccccCCCCcCCCCC
Confidence 78999999999999999999998873 11 11 2 3567776 8999999987777774 789999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHhc-ceeEEEecCCCcee-cccCCCCCCCHHHHHHHHHHH
Q 037202 104 DQFFPMNNDEEACQPETRAIMSWVRQI-HFTASASLHGVISL-IQRYYYGCPDDEAFQFLASVY 165 (393)
Q Consensus 104 ~~w~~~~~~~~~sepEt~ai~~~~~~~-~~~~~idlHsg~~~-~p~~y~~~pd~~~~~~la~~~ 165 (393)
..+... +....|.+....+..-. ..++++|||+++.. .|+.+ .+..+..++||+++
T Consensus 69 g~~~~g----~~~~~e~~~A~~l~~~i~~aD~~iDLHt~~~~~~p~~~--~~~~~~~~~la~~~ 126 (272)
T cd06910 69 PDVLDG----PRDSIELRRARELRPVIDTADYLLDLHSMQWPSPPLIL--AGDLQRGRALARAL 126 (272)
T ss_pred CcccCC----CcccHHHHHHHHHHHHHhhCCEEEECCCCCCCCCCEEE--eCCCHHHHHHHHHh
Confidence 754321 11235655544443222 67899999998753 33332 23444566676654
No 65
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=99.43 E-value=2.9e-12 Score=125.59 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCC
Q 037202 26 EPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQ 105 (393)
Q Consensus 26 ~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~ 105 (393)
...|.++|+||+||||+.|.+++.+|++++... .+.-..+ +++|++||.++....|.. ..||||.||..
T Consensus 45 ~~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~--------~~~~~~~-v~~i~~Np~A~~~~~R~v--d~DLNR~FpG~ 113 (329)
T PRK05324 45 PSTKALVLSAGIHGNETAPIELLDQLVRDLLAG--------ELPLRAR-LLVILGNPPAMRAGKRYL--DEDLNRLFGGR 113 (329)
T ss_pred CCCCeEEEECCcccCcHHHHHHHHHHHHhhhcc--------ccccCce-EEEEecCHHHHHhCcccC--CCCcccCCCCC
Confidence 456899999999999999999999999998642 1111234 555689999999999986 46999999986
Q ss_pred CCCCCCCCCCChHHHH---HHHHHHHh----c--ceeEEEecCCC
Q 037202 106 FFPMNNDEEACQPETR---AIMSWVRQ----I--HFTASASLHGV 141 (393)
Q Consensus 106 w~~~~~~~~~sepEt~---ai~~~~~~----~--~~~~~idlHsg 141 (393)
+.+. ...+|.+ .|.+.+.. . ..++.+|||++
T Consensus 114 ~~~~-----~~~~E~~rA~~L~~~i~~~~~~~~~~~D~~iDLHta 153 (329)
T PRK05324 114 HQQF-----PGSDEARRAAELEQAVEDFFAAGAERVRWHYDLHTA 153 (329)
T ss_pred cCCC-----CCcHHHHHHHHHHHHHHHHhcccCccceEEEECCCC
Confidence 6532 1122543 23332222 1 47899999994
No 66
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.42 E-value=3.1e-13 Score=134.15 Aligned_cols=111 Identities=24% Similarity=0.393 Sum_probs=86.3
Q ss_pred eEeeeeCCCc-eEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCC-hHHHHhhcCeEEEEEec
Q 037202 2 FSIGKSVSGF-PLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKD-SLARLIVENMHLHILPS 79 (393)
Q Consensus 2 ~~iG~S~egr-~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d-~~~~~ll~~~~i~ivP~ 79 (393)
..+|+|.+|| ++++.+-+.+ ..++++++.|++|++ |..++..++..|+..|... ..++.++++..++++|.
T Consensus 124 ~~~g~sv~GR~~~~i~~~~~~----~~~~~i~~~~~~H~~---g~~~~~~~~~~li~r~~~~~~~~~~lld~~~~~vvp~ 196 (374)
T COG2866 124 ELIGRSVEGRDDPLITFPESN----PEHKTILITAGQHAR---GEKMVEWFLYNLILRYLDPDVQVRKLLDRADLHVVPN 196 (374)
T ss_pred eecCccccccccceeeecCCC----CccceeeEecccccC---ccHHHHHHHHHHHHHhcCccchhhhhhccccEEEecc
Confidence 4689999999 6665555554 347999999999996 5556666666666665554 78899999999999999
Q ss_pred cCccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHh
Q 037202 80 MNPDGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQ 129 (393)
Q Consensus 80 ~NPDG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~ 129 (393)
+||||+++. .|+|+.|+||||+|+. ..+.+.+.++.+...
T Consensus 197 ~NpDG~~~~~lr~na~~~dLnr~~~~----------~~~~~~~~~~~~~~~ 237 (374)
T COG2866 197 VNPDGSDLGNLRTNANGVDLNRNFIA----------PNEEEGKEVYRWNDA 237 (374)
T ss_pred cCCchhhhcccccccCccchhhhccC----------CCcccchHHHhhhhh
Confidence 999999999 7999999999999964 344455555555443
No 67
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=99.40 E-value=9.7e-12 Score=121.72 Aligned_cols=100 Identities=21% Similarity=0.173 Sum_probs=72.6
Q ss_pred CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCC
Q 037202 26 EPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQ 105 (393)
Q Consensus 26 ~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~ 105 (393)
.+.|.++|+||+||||+.|.+++.++++++.... +.-....++|+.||.++....|... .||||.||..
T Consensus 40 ~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~~---------l~~~~~v~~~~~Np~A~~~~~R~~d--~DLNR~FpG~ 108 (322)
T cd03855 40 PATKAIVISAGVHGNETAPIEILNQLIKDLLAGE---------LPLAHRLLFIFGNPPAMRAGERFVD--ENLNRLFSGR 108 (322)
T ss_pred CCCCeEEEEccccCCchhHHHHHHHHHHhhhhcc---------ccCCeEEEEEeeCHHHHHhCcccCC--CCccCCCCCC
Confidence 4579999999999999999999999999986421 1112335677899999999999753 5999999975
Q ss_pred CCCCCCCCCCChHHHH-------HHHHHHHhc---ceeEEEecCCC
Q 037202 106 FFPMNNDEEACQPETR-------AIMSWVRQI---HFTASASLHGV 141 (393)
Q Consensus 106 w~~~~~~~~~sepEt~-------ai~~~~~~~---~~~~~idlHsg 141 (393)
... ....+|++ .+.+++... ..++.+|||++
T Consensus 109 ~~~-----~~~~~E~~rA~~L~~~~~~~~~~~~~~~~d~~iDLHta 149 (322)
T cd03855 109 HQK-----DEPGPERARAAELEQAVADFFAAGPSGAERWHYDLHTA 149 (322)
T ss_pred ccc-----CCCChHHHHHHHHHHHHHHHHhhcccccCcEEEEccCC
Confidence 432 11234443 233344443 67999999996
No 68
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=99.40 E-value=5.6e-12 Score=123.23 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCC
Q 037202 26 EPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQ 105 (393)
Q Consensus 26 ~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~ 105 (393)
++.|+++++||+||||+.|.+++.++++++... .+.-..++.++ ++||.|++...|... .||||.||..
T Consensus 39 ~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~--------~~~~~~~l~~i-~~Np~A~~~~~R~~~--~DLNR~FpG~ 107 (319)
T TIGR03242 39 PPQKSLVISAGIHGNETAPIEILEQLLGDIAAG--------KLPLRVRLLVI-LGNPPAMRTGKRYLH--DDLNRMFGGR 107 (319)
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHhhhhhc--------cccCCceEEEE-EcCHHHHHhCcccCC--CCccCCCCCc
Confidence 456999999999999999999999999988532 11123455444 799999999999864 6999999974
Q ss_pred CCCCCCCCCCChHHHH-------HHHHHHHhc---ceeEEEecCCC
Q 037202 106 FFPMNNDEEACQPETR-------AIMSWVRQI---HFTASASLHGV 141 (393)
Q Consensus 106 w~~~~~~~~~sepEt~-------ai~~~~~~~---~~~~~idlHsg 141 (393)
.... ....|++ .+.+++... ..++.||||++
T Consensus 108 ~~~~-----~~~~E~~rA~~l~~~~~~~~~~~~~~~~D~~IDLHt~ 148 (319)
T TIGR03242 108 YQQL-----APSFETCRAAELEQCVEDFFSQGGRSVARWHYDLHTA 148 (319)
T ss_pred cccc-----cCchHHHHHHHHHHHHHHHhccccCccceEEEECCCC
Confidence 4211 1223432 222244443 46999999995
No 69
>KOG3641 consensus Zinc carboxypeptidase [Amino acid transport and metabolism]
Probab=99.39 E-value=3.7e-12 Score=127.61 Aligned_cols=130 Identities=22% Similarity=0.312 Sum_probs=112.2
Q ss_pred EeeeeCCCceEEEEEEeCCCCCCCCCCEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCc
Q 037202 3 SIGKSVSGFPLWVIEISDKPGVEEPEPAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNP 82 (393)
Q Consensus 3 ~iG~S~egr~i~~l~i~~~~~~~~~kp~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NP 82 (393)
.++.+..||++.+++|... +-.++|.|++.|.+|.+|.....++-.+++.|+.+ ++.+..|.+.+.+-|+|++||
T Consensus 406 Vl~~tl~g~~~~l~tI~~a--e~~~~~~IfLSaRVHpgeTnsSwvmkGilefl~s~---~p~aq~LRe~~vFKI~PMLNP 480 (650)
T KOG3641|consen 406 VLLFTLVGRAMALATIDMA--ECAPRPVIFLSARVHPGETNSSWVMKGILEFLVSN---SPLAQGLRESYVFKIVPMLNP 480 (650)
T ss_pred eeeeeecCCccceEEeeHh--hcCCcceEEEecccCCCCCcHHHHHHHHHHHhhcC---CcHHHhhhhheeEecccccCC
Confidence 4788999999999999843 12468999999999999999999999999999864 777888999999999999999
Q ss_pred cccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhc------ceeEEEecCCCcee
Q 037202 83 DGYALK-RRGNANNIDLNRDFPDQFFPMNNDEEACQPETRAIMSWVRQI------HFTASASLHGVISL 144 (393)
Q Consensus 83 DG~~~~-~R~N~~gvDLNRNfp~~w~~~~~~~~~sepEt~ai~~~~~~~------~~~~~idlHsg~~~ 144 (393)
||.-.+ .|+.-.|.||||-|.. +.+.+.|+..+..+++.+. .+.+++|+|+.++.
T Consensus 481 DGV~~GnyRCSL~G~DLNR~w~t-------ps~~shPsi~~~k~li~~l~~~~~~~p~~Y~DlHgHSqK 542 (650)
T KOG3641|consen 481 DGVIVGNYRCSLMGLDLNRMWST-------PSPASHPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQK 542 (650)
T ss_pred CceecccceeccccchhhhhcCC-------CCcccchhHHhHHHHHhhhhcccccCceEeecccccccc
Confidence 999987 8999999999999964 3556888888888887765 47899999998865
No 70
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=99.33 E-value=1.2e-11 Score=97.92 Aligned_cols=84 Identities=24% Similarity=0.437 Sum_probs=76.3
Q ss_pred eeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC--ceEEEEEEccC
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE--TATADFILDPD 322 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~--~~~~~f~L~~~ 322 (393)
++|+|.|+.+|+|++ |+|.+.+.+..+.|+ .+|.|...+++| .|+|.+++.||.+....+.+.. ...+++.|.++
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td-~~G~F~i~~~~g-~~~l~is~~Gy~~~~~~i~~~~~~~~~~~i~L~~~ 79 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTKKGTVTD-ENGRFSIKLPEG-DYTLKISYIGYETKTITISVNSNKNTNLNIYLEPK 79 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCcceEEEC-CCeEEEEEEcCC-CeEEEEEEeCEEEEEEEEEecCCCEEEEEEEEeeC
Confidence 799999998899999 999999888777787 999998889999 9999999999999999999876 35789999999
Q ss_pred CCCCCCCcc
Q 037202 323 SALEDNTPR 331 (393)
Q Consensus 323 ~~~l~eVv~ 331 (393)
..+|+||++
T Consensus 80 ~~~L~eVvV 88 (88)
T PF13715_consen 80 SNQLDEVVV 88 (88)
T ss_pred cccCCeEEC
Confidence 999999964
No 71
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=99.04 E-value=3.1e-09 Score=99.29 Aligned_cols=185 Identities=21% Similarity=0.152 Sum_probs=113.6
Q ss_pred EEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCCC
Q 037202 30 AFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFPM 109 (393)
Q Consensus 30 ~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~ 109 (393)
.+.|+||+||||..+.+++-.+++.+...+. | -..+..++ .-||-..+...|+ -.-||||.|.+.|...
T Consensus 45 ~lvIsaGiHGNEtapvEll~kl~~~~~ag~~--p------~a~r~L~i-lgNP~Ai~~gkRY--ieqDlNR~F~gr~q~~ 113 (324)
T COG2988 45 SLVISAGIHGNETAPVELLDKLQQKISAGQL--P------LAWRCLVI-LGNPPAIAAGKRY--IEQDLNRMFGGRPQSF 113 (324)
T ss_pred ceEEEecccCCccCcHHHHHHHHhhhhhccc--C------cceeEEEE-ecCcHHHHhchHH--HhhhHHHHhCCCcccC
Confidence 6999999999999999999999999876542 1 02333333 5899999988776 3559999999988754
Q ss_pred CCCCCCChHH-HHHHHHHHHhc--ceeEEEecCCC---ceecccCCCCCCCHHHHHHHHHHHHHHhccccCCCcccccee
Q 037202 110 NNDEEACQPE-TRAIMSWVRQI--HFTASASLHGV---ISLIQRYYYGCPDDEAFQFLASVYSRSHYNMSLSTEFQGGII 183 (393)
Q Consensus 110 ~~~~~~sepE-t~ai~~~~~~~--~~~~~idlHsg---~~~~p~~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~~ 183 (393)
+.+...+.-| -++++.|...- +.++++|||+. +....+.-.+.|+......+....++++..
T Consensus 114 ~~ne~~ra~eler~~q~ff~~~~~~vr~h~DLHtairgs~h~~f~~~P~~~~~~~~~l~a~L~~a~~e------------ 181 (324)
T COG2988 114 SENETLRAYELERALQDFFQQGKESVRWHLDLHTAIRGSGHPQFGVLPQPDRPWSLKLLAWLSAAGLE------------ 181 (324)
T ss_pred CCCchhhhHHHHHHHHHHHhcCCCcceEEEEhhhhhhccCCcceeeCCCCCchhHHHHHHHHHhCCcc------------
Confidence 4333333333 24445554443 89999999983 333333334445533444444444433211
Q ss_pred ccceeEecC-CCccccccccCCceEEEEEecCCCCCCCCChHHHHHHHHHHHHHHHH
Q 037202 184 NGASWYPIY-GGMQDWNYIYGGCFELTLEISDDKWPSAEELPTIWEYNKMSMLNLVA 239 (393)
Q Consensus 184 ~~~~~y~~~-G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~i~~~~~~~~~sll~l~~ 239 (393)
....+... |++.-+.+.+.+..++|+|||-.--..++++.+. +....+|+.+++
T Consensus 182 -a~vl~~~Pg~tf~~~ss~~l~ala~TLELGka~pfgen~l~~~-~~~~~~i~~lls 236 (324)
T COG2988 182 -ALVLHTSPGGTFSHFSSEHLGALACTLELGKALPFGENLLRQF-ERTAQAILALLS 236 (324)
T ss_pred -eEEEEcCCCCCchhhchhhhhheeeEEeecccCCCChHHHHHH-HHHHHHHHHHHh
Confidence 11233333 3444455567899999999995322223344332 333445666664
No 72
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.98 E-value=2.2e-09 Score=83.51 Aligned_cols=72 Identities=29% Similarity=0.646 Sum_probs=55.8
Q ss_pred eeeEEeecCCCCCCc-ceEEEe----ceeeeeeeecCceeEEee-cCCCceeEEEEEecCcceeeE-EEEeCC--ceEEE
Q 037202 246 VRGRIFSSDSGRPLP-GSITIK----GINYTVNAGRAFADYYRL-LTPGKRYEVMASMPGYKPKST-SIWLEE--TATAD 316 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~----g~~~~~~t~~~~G~y~r~-l~pG~~Y~v~vs~~Gy~~~~~-~v~v~~--~~~~~ 316 (393)
|+|+|+|+ +|+|++ |.|.+. +....+.|+ .+|.|... |+|| .|+|+++++||.+... .|.+.. ...++
T Consensus 2 I~G~V~d~-~g~pv~~a~V~l~~~~~~~~~~~~Td-~~G~f~~~~l~~g-~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~ 78 (82)
T PF13620_consen 2 ISGTVTDA-TGQPVPGATVTLTDQDGGTVYTTTTD-SDGRFSFEGLPPG-TYTLRVSAPGYQPQTQENVTVTAGQTTTVD 78 (82)
T ss_dssp EEEEEEET-TSCBHTT-EEEET--TTTECCEEE---TTSEEEEEEE-SE-EEEEEEEBTTEE-EEEEEEEESSSSEEE--
T ss_pred EEEEEEcC-CCCCcCCEEEEEEEeeCCCEEEEEEC-CCceEEEEccCCE-eEEEEEEECCcceEEEEEEEEeCCCEEEEE
Confidence 79999998 999999 999987 444456676 99999766 9999 9999999999999997 599986 66789
Q ss_pred EEEc
Q 037202 317 FILD 320 (393)
Q Consensus 317 f~L~ 320 (393)
|.|+
T Consensus 79 i~L~ 82 (82)
T PF13620_consen 79 ITLE 82 (82)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9885
No 73
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=97.16 E-value=0.0021 Score=48.39 Aligned_cols=61 Identities=23% Similarity=0.426 Sum_probs=48.1
Q ss_pred CCCCcceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC--ceEEEEEEccC
Q 037202 256 GRPLPGSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE--TATADFILDPD 322 (393)
Q Consensus 256 g~Pi~a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~--~~~~~f~L~~~ 322 (393)
.+|-.|.|.|+|...+. +. .-...+++| .|+|+++++||.+.+.+|.+.. ...+++.|+|.
T Consensus 8 s~p~gA~V~vdg~~~G~-tp----~~~~~l~~G-~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~~~ 70 (71)
T PF08308_consen 8 SNPSGAEVYVDGKYIGT-TP----LTLKDLPPG-EHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLEPQ 70 (71)
T ss_pred EECCCCEEEECCEEecc-Cc----ceeeecCCc-cEEEEEEECCCeeEEEEEEECCCCEEEEEEEEEEC
Confidence 35656999999976662 21 122348899 9999999999999999999997 77889999875
No 74
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=97.12 E-value=0.001 Score=59.12 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=57.0
Q ss_pred CEEEEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCC
Q 037202 29 PAFKFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFP 108 (393)
Q Consensus 29 p~v~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~ 108 (393)
|.=+++||+||+||--+.-++ +.|.. ..+.+..++|+|++|.-=|- + -|+..|
T Consensus 7 p~rLFvgGlHG~Egk~t~~iL---~~l~~---------~~~~~G~l~i~plv~~~kYi-S--------TL~~~Y------ 59 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDTSPIL---KRLKP---------NDFNNGNLIIIPLVENSKYI-S--------TLDPEY------ 59 (193)
T ss_pred ceEEEEeeccCcchhhHHHHH---HHhCc---------ccccCceEEEEeCCCCCCce-e--------ecCHHH------
Confidence 888999999999996655443 33321 12335899999955543232 2 245555
Q ss_pred CCCCCCCChHHHHHHHHHHHhcceeEEEecCCCc
Q 037202 109 MNNDEEACQPETRAIMSWVRQIHFTASASLHGVI 142 (393)
Q Consensus 109 ~~~~~~~sepEt~ai~~~~~~~~~~~~idlHsg~ 142 (393)
-..++-+.+.++++++++++++-+|+++
T Consensus 60 ------Y~s~~Gk~il~lIe~y~P~~Y~ElHsY~ 87 (193)
T PF09892_consen 60 ------YKSEMGKKILDLIEKYKPEFYFELHSYS 87 (193)
T ss_pred ------hcchhhhHHHHHHHHhCCceEEEEeecC
Confidence 1345778999999999999999999986
No 75
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.04 E-value=0.0025 Score=54.01 Aligned_cols=64 Identities=28% Similarity=0.464 Sum_probs=51.3
Q ss_pred ceeeEEeecCCCCCCc-ceEEEeceee----------eeeeecCceeEEeecCCCceeEEEEEecCcceeeE-EEEeCC
Q 037202 245 GVRGRIFSSDSGRPLP-GSITIKGINY----------TVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKST-SIWLEE 311 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~-a~V~v~g~~~----------~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~-~v~v~~ 311 (393)
.|+|...|. +|+|++ ++|+++-... ...|+ ..|.|-..+.|| .|.|++...|+.+... .|+|..
T Consensus 4 ~ISGvL~dg-~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~-~~G~Ys~~~epG-~Y~V~l~~~g~~~~~vG~I~V~~ 79 (134)
T PF08400_consen 4 KISGVLKDG-AGKPVPGCTITLKARRTSSTVVVGTVASVVTG-EAGEYSFDVEPG-VYRVTLKVEGRPPVYVGDITVYE 79 (134)
T ss_pred EEEEEEeCC-CCCcCCCCEEEEEEccCchheEEEEEEEEEcC-CCceEEEEecCC-eEEEEEEECCCCceeEEEEEEec
Confidence 389999887 999999 8998874321 23455 899999999999 9999999999988773 366665
No 76
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.39 E-value=0.023 Score=48.75 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=53.5
Q ss_pred cceeeEEeecCCCCCCc-ceEEEecee-------eeeeeecCceeEEe-----ecCCCceeEEEEEecCcceeeEEEEeC
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGIN-------YTVNAGRAFADYYR-----LLTPGKRYEVMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~-------~~~~t~~~~G~y~r-----~l~pG~~Y~v~vs~~Gy~~~~~~v~v~ 310 (393)
..|++.|.|..+|.|.+ ..|.+...+ ....|| .+|.+.. .+.|| .|+|++...+|-.... ..
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td-~dGR~~~l~~~~~~~~G-~Y~L~F~t~~Yf~~~~---~~ 101 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTD-KDGRIKALWPEQTATTG-DYRVVFKTGDYFKKQN---LE 101 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEEC-CCCCCccccCcccCCCe-eEEEEEEcchhhhccC---CC
Confidence 46999999999999999 688887543 345566 8999943 37789 9999999999987421 22
Q ss_pred C---ceEEEEEEc
Q 037202 311 E---TATADFILD 320 (393)
Q Consensus 311 ~---~~~~~f~L~ 320 (393)
. ...+.|.++
T Consensus 102 ~F~p~v~v~F~i~ 114 (137)
T PRK15036 102 SFFPEIPVEFHIN 114 (137)
T ss_pred CCcceeEEEEEEC
Confidence 2 455677665
No 77
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.17 E-value=0.0076 Score=52.40 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=58.2
Q ss_pred EEEeccCCCChhHHHHHHHHHHHHHHhccCChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCCCCCCCCCCC
Q 037202 32 KFIGNVHGDEPVGRELLILLANWICDNHVKDSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDFPDQFFPMNN 111 (393)
Q Consensus 32 ~i~agiHg~E~~g~~~~l~li~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNfp~~w~~~~~ 111 (393)
+++||+||||+-.++-+++ +..+ ++ .+..+.++|.+|+--|.-+ ||-.|
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~------~~------~ng~l~Vip~v~n~~YIST---------ldp~y--------- 66 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVL------PE------ENGVLRVIPKVENGPYIST---------LDPSY--------- 66 (198)
T ss_pred EEEeeccCcccchhhhhhh-hccc------Cc------cCceEEEEeccCCCCceee---------cChhh---------
Confidence 8999999999998888877 3322 11 3578999998888766532 33333
Q ss_pred CCCCChHHHHHHHHHHHhcceeEEEecCCCc
Q 037202 112 DEEACQPETRAIMSWVRQIHFTASASLHGVI 142 (393)
Q Consensus 112 ~~~~sepEt~ai~~~~~~~~~~~~idlHsg~ 142 (393)
...++-+.+.+.+++++++.++.+|++.
T Consensus 67 ---y~s~~G~~ilr~vek~rP~vY~ElH~Yr 94 (198)
T COG4073 67 ---YRSEVGARILRVVEKLRPDVYVELHCYR 94 (198)
T ss_pred ---ccchhhHHHHHHHHHhCCceEEEEeecC
Confidence 2346778899999999999999999975
No 78
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=95.64 E-value=0.043 Score=47.56 Aligned_cols=65 Identities=23% Similarity=0.496 Sum_probs=45.4
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee--------------------eeeeecCceeE-EeecCCCceeE--------E
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY--------------------TVNAGRAFADY-YRLLTPGKRYE--------V 293 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~--------------------~~~t~~~~G~y-~r~l~pG~~Y~--------v 293 (393)
..++|+|+|. +|.|++ |.|.+-..+. .+.|+ .+|.| ++.+.|| .|. +
T Consensus 12 l~l~G~V~D~-~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td-~~G~y~f~ti~Pg-~Y~~~R~~HiH~ 88 (146)
T cd00421 12 LTLTGTVLDG-DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITD-ADGRYRFRTIKPG-PYPIGRPPHIHF 88 (146)
T ss_pred EEEEEEEECC-CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEEC-CCcCEEEEEEcCC-CCCCCCCCEEEE
Confidence 4589999997 899999 8888753222 24455 78998 5669999 888 5
Q ss_pred EEEecCc-ceeeEEEEeCC
Q 037202 294 MASMPGY-KPKSTSIWLEE 311 (393)
Q Consensus 294 ~vs~~Gy-~~~~~~v~v~~ 311 (393)
.+.+.|| .+.+.++-.+.
T Consensus 89 ~V~~~g~~~~l~Tqlyf~~ 107 (146)
T cd00421 89 KVFAPGYNRRLTTQLYFPG 107 (146)
T ss_pred EEECCCccCcEEEEEEeCC
Confidence 5666777 55555454443
No 79
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=95.42 E-value=0.056 Score=50.21 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=53.4
Q ss_pred hcceeeEEeecCCCCCCc-----ceEEEe--cee----eeeeeecCceeE-EeecCCCceeEEEE-EecC---cceeeEE
Q 037202 243 KTGVRGRIFSSDSGRPLP-----GSITIK--GIN----YTVNAGRAFADY-YRLLTPGKRYEVMA-SMPG---YKPKSTS 306 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-----a~V~v~--g~~----~~~~t~~~~G~y-~r~l~pG~~Y~v~v-s~~G---y~~~~~~ 306 (393)
..+++|+|.|..+|+|+. +.|.+- |.. ..+.. ..+|.| --+|-.| .|+|+. .-.| +...++.
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v-~qDGtf~n~~lF~G-~Yki~~~~G~fp~~~~~dti~ 98 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYV-KQDGTFRNTKLFDG-DYKIVPKNGNFPWVVPVDTIE 98 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB--TTSEEEEEEE-SE-EEEEEE-CTSCSBSCCE--EE
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEE-ccCCceeeeeEecc-ceEEEEcCCCCcccCCCccEE
Confidence 467999999988999996 234443 211 12333 489999 7779999 999999 7788 8888888
Q ss_pred EEeCCceEEEEEEccCC
Q 037202 307 IWLEETATADFILDPDS 323 (393)
Q Consensus 307 v~v~~~~~~~f~L~~~~ 323 (393)
++|...+++||...|--
T Consensus 99 v~i~G~t~~d~eVtPY~ 115 (222)
T PF12866_consen 99 VDIKGNTTQDFEVTPYL 115 (222)
T ss_dssp EEESSCEEEEEEE-BSE
T ss_pred EEecCceEEeEEeeeeE
Confidence 88887778888888763
No 80
>PF12985 DUF3869: Domain of unknown function (DUF3869); InterPro: IPR024620 This functionally uncharacterised domain is found in bacterial sequences, including the N-terminal region of a putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482.; PDB: 3G3L_A 3KOG_A.
Probab=94.98 E-value=0.049 Score=43.98 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=49.8
Q ss_pred hcceeeEEeecCCCCCCc--ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC-------ce
Q 037202 243 KTGVRGRIFSSDSGRPLP--GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE-------TA 313 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~--a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~-------~~ 313 (393)
...|.|.|+|..+|+++. +++.+.+-. +| .+.++ .++++++..||.+.+.+|.++. .-
T Consensus 21 ~~tI~~tV~da~tG~~vt~~a~vti~~~~--------~~----~~A~~-a~~vtas~~~y~~~~~tV~vpal~~Gq~a~~ 87 (104)
T PF12985_consen 21 KYTIAGTVYDAETGEDVTTTATVTISAGS--------DG----TLAAK-AVTVTASKDGYMTGSVTVNVPALKAGQFAVY 87 (104)
T ss_dssp EEEEEEEEEETTTTEE-CGCSEEEETTCC--------CC----CE--E-CCEEEEEECTCEEEEEEEEE--B-TT-EEEE
T ss_pred EEEEEEEEEecCCCCeeeccceEEEccCC--------Cc----ccccc-cEEEEEEccCCeeeEEEEEehhhcCCceEEE
Confidence 456999999999999996 788776543 11 25566 8899999999999999999886 33
Q ss_pred EEEEEEccCCC
Q 037202 314 TADFILDPDSA 324 (393)
Q Consensus 314 ~~~f~L~~~~~ 324 (393)
.++|.|.+...
T Consensus 88 ~v~i~L~~~~~ 98 (104)
T PF12985_consen 88 PVNIALQKEAA 98 (104)
T ss_dssp EEEEEE-CTCE
T ss_pred eeEEEEeeccc
Confidence 57999987754
No 81
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.58 E-value=0.12 Score=48.82 Aligned_cols=65 Identities=26% Similarity=0.530 Sum_probs=46.4
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee------------------eeeeecCceeE-EeecCCCcee------------
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY------------------TVNAGRAFADY-YRLLTPGKRY------------ 291 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~------------------~~~t~~~~G~y-~r~l~pG~~Y------------ 291 (393)
.-++|+|+|. .|+||+ |.|.|-..+. .+.|+ .+|.| ++.+.|| .|
T Consensus 105 l~l~G~V~D~-~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td-~~G~y~f~Ti~P~-~Ypip~dGp~g~lL 181 (256)
T cd03458 105 LFVHGTVTDT-DGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTD-EDGRYRFRTIRPV-PYPIPPDGPTGELL 181 (256)
T ss_pred EEEEEEEEcC-CCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeC-CCCCEEEEEECCC-CccCCCCCcHHHHH
Confidence 4489999997 899999 8888752111 24465 88998 5679998 77
Q ss_pred -------------EEEEEecCcceeeEEEEeCC
Q 037202 292 -------------EVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 292 -------------~v~vs~~Gy~~~~~~v~v~~ 311 (393)
.+.++++||.+.+..+-...
T Consensus 182 ~~~grh~~RpaHIHf~V~a~G~~~LtTqlyf~~ 214 (256)
T cd03458 182 EALGRHPWRPAHIHFMVSAPGYRTLTTQIYFEG 214 (256)
T ss_pred HhcccCCCCCCeEEEEEECCCcceeeEEEecCC
Confidence 55677788876666665554
No 82
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.11 E-value=0.18 Score=47.50 Aligned_cols=66 Identities=20% Similarity=0.326 Sum_probs=45.9
Q ss_pred hcceeeEEeecCCCCCCc-ceEEEeceee------------------eeeeecCceeE-EeecCCCcee-----------
Q 037202 243 KTGVRGRIFSSDSGRPLP-GSITIKGINY------------------TVNAGRAFADY-YRLLTPGKRY----------- 291 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~------------------~~~t~~~~G~y-~r~l~pG~~Y----------- 291 (393)
..-++|+|+|. .|+||+ |.|.|-..+. .+.|+ .+|.| ++.+.|| .|
T Consensus 99 ~l~l~G~V~D~-~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td-~~G~y~F~Ti~P~-~YpiP~dGp~g~l 175 (247)
T cd03462 99 PLLFRGTVKDL-AGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTD-EDGRYEVRTTVPV-PYQIPNDGPTGAL 175 (247)
T ss_pred EEEEEEEEEcC-CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeC-CCCCEEEEEECCC-CcCCCCCCcHHHH
Confidence 34589999997 899999 8888852111 24455 78888 5678898 77
Q ss_pred --------------EEEEEecCcceeeEEEEeCC
Q 037202 292 --------------EVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 292 --------------~v~vs~~Gy~~~~~~v~v~~ 311 (393)
.+.++++||.+.+..+-...
T Consensus 176 L~~~grh~~RpaHIHf~V~a~G~~~L~Tqlyf~~ 209 (247)
T cd03462 176 LEAMGGHSWRPAHVHFKVRADGYETLTTQLYFEG 209 (247)
T ss_pred HHhcccCCCCCCeEEEEEECCCcCceEEEEecCC
Confidence 34566788876666665543
No 83
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=93.99 E-value=0.19 Score=47.29 Aligned_cols=64 Identities=25% Similarity=0.391 Sum_probs=44.2
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee------------------eeeeecCceeE-EeecCCCceeE-----------
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY------------------TVNAGRAFADY-YRLLTPGKRYE----------- 292 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~------------------~~~t~~~~G~y-~r~l~pG~~Y~----------- 292 (393)
.-++|+|+|. +|+|++ |.|.|--.+. .+.|+ .+|.| ++.+.|| .|.
T Consensus 99 l~v~G~V~D~-~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td-~~G~y~F~Ti~P~-~YpiP~dgp~g~lL 175 (246)
T TIGR02465 99 LLIRGTVRDL-SGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTA-ADGSYEVRTTMPV-PYQIPDAGPTGALL 175 (246)
T ss_pred EEEEEEEEcC-CCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEEC-CCCCEEEEEECCC-CCCCCCCCchHHHH
Confidence 4589999986 899999 8888852111 24455 78998 5668888 773
Q ss_pred --------------EEEEecCcceeeEEEEeC
Q 037202 293 --------------VMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 293 --------------v~vs~~Gy~~~~~~v~v~ 310 (393)
+.++++||.+.+..+-..
T Consensus 176 ~~~grh~~RpaHIH~~V~a~G~~~L~Tqiyf~ 207 (246)
T TIGR02465 176 ETMGRHSWRPAHVHYKVRADGYRPLTTQAYFE 207 (246)
T ss_pred HhcccCCCCCCeEEEEEECCCcCceEEeEecC
Confidence 456667776665555444
No 84
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=93.85 E-value=0.2 Score=48.13 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=47.3
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee------------------eeeeecCceeE-EeecCCCcee------------
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY------------------TVNAGRAFADY-YRLLTPGKRY------------ 291 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~------------------~~~t~~~~G~y-~r~l~pG~~Y------------ 291 (393)
.-++|+|+|. .|+||+ |.|.|-..+. .+.|+ .+|.| ++.+.|| .|
T Consensus 129 l~v~G~V~D~-~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD-~~G~y~F~TI~P~-~YpiP~dGp~g~lL 205 (285)
T TIGR02439 129 LFLHGQVTDA-DGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITD-AEGRYRARSIVPS-GYGCPPQGPTQQLL 205 (285)
T ss_pred EEEEEEEECC-CCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEEC-CCCCEEEEEECCC-CCcCCCCCcHHHHH
Confidence 4489999986 799999 8888852111 24455 78998 5678888 77
Q ss_pred -------------EEEEEecCcceeeEEEEeCC
Q 037202 292 -------------EVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 292 -------------~v~vs~~Gy~~~~~~v~v~~ 311 (393)
.+.++++||.+.+..+-...
T Consensus 206 ~~~grh~~RpaHIHf~V~a~G~~~LtTQiyf~g 238 (285)
T TIGR02439 206 NLLGRHGNRPAHVHFFVSAPGHRKLTTQINIEG 238 (285)
T ss_pred HhccCCCCCCCeEEEEEecCCCCeeEEEEecCC
Confidence 35677888887777776654
No 85
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.54 E-value=0.25 Score=47.45 Aligned_cols=65 Identities=25% Similarity=0.491 Sum_probs=46.9
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee------------------eeeeecCceeE-EeecCCCcee------------
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY------------------TVNAGRAFADY-YRLLTPGKRY------------ 291 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~------------------~~~t~~~~G~y-~r~l~pG~~Y------------ 291 (393)
.-++|+|+|. .|+||+ |.|.|-..+. .+.|+ .+|.| ++.+.|| .|
T Consensus 125 l~l~G~V~D~-~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD-~~G~y~F~TI~P~-~YpiP~dGp~g~lL 201 (282)
T cd03460 125 LVMHGTVTDT-DGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITD-ADGRYRFRSIMPS-GYGVPPGGPTQQLL 201 (282)
T ss_pred EEEEEEEECC-CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeC-CCCCEEEEEECCC-CCcCCCCCcHHHHH
Confidence 4489999987 899999 8888752111 23455 78998 5778888 77
Q ss_pred -------------EEEEEecCcceeeEEEEeCC
Q 037202 292 -------------EVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 292 -------------~v~vs~~Gy~~~~~~v~v~~ 311 (393)
.+.++++||.+.+..+-...
T Consensus 202 ~~~grh~~RpaHIHf~V~a~G~~~LtTqlyf~g 234 (282)
T cd03460 202 NALGRHGNRPAHIHFFVSAPGHRKLTTQINIEG 234 (282)
T ss_pred HhhcCCCCCCCeEEEEEecCCcCceEEEEecCC
Confidence 45677788877777776654
No 86
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=93.46 E-value=0.37 Score=43.43 Aligned_cols=47 Identities=26% Similarity=0.596 Sum_probs=29.7
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee--------------------eeeeecCceeE-EeecCCCceeEE
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY--------------------TVNAGRAFADY-YRLLTPGKRYEV 293 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~--------------------~~~t~~~~G~y-~r~l~pG~~Y~v 293 (393)
.-++|+|+|. +|+||+ |.|.|--.+. .+.|+ .+|.| ++.+.|| .|.+
T Consensus 30 l~l~G~V~D~-~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td-~~G~y~f~Ti~Pg-~Y~~ 98 (183)
T PF00775_consen 30 LVLHGRVIDT-DGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTD-ADGRYSFRTIKPG-PYPI 98 (183)
T ss_dssp EEEEEEEEET-TSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEEC-TTSEEEEEEE-----EEE
T ss_pred EEEEEEEECC-CCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecC-CCCEEEEEeeCCC-CCCC
Confidence 4589999996 899999 8888842110 24465 88988 6779999 8864
No 87
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=92.86 E-value=0.38 Score=42.29 Aligned_cols=64 Identities=27% Similarity=0.494 Sum_probs=42.9
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceee-----------------------eeeeecCceeE-EeecCCCceeE------
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINY-----------------------TVNAGRAFADY-YRLLTPGKRYE------ 292 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~-----------------------~~~t~~~~G~y-~r~l~pG~~Y~------ 292 (393)
.-++|+|+|. +|+||+ |.|.|-..+. ...|+ .+|.| ++.+.|| .|.
T Consensus 16 l~l~g~V~D~-~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td-~~G~~~f~Ti~Pg-~Y~~p~~~~ 92 (158)
T cd03459 16 IILEGRVLDG-DGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTD-ADGRYRFRTIKPG-AYPWRNGAW 92 (158)
T ss_pred EEEEEEEECC-CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEEC-CCCcEEEEEECCC-CcCCCCCCC
Confidence 4589999996 899999 8888752110 13455 77888 6779998 887
Q ss_pred ------EEEEecCc-ceeeEEEEeC
Q 037202 293 ------VMASMPGY-KPKSTSIWLE 310 (393)
Q Consensus 293 ------v~vs~~Gy-~~~~~~v~v~ 310 (393)
+.+.+.|| ...+.++-.+
T Consensus 93 R~~HIH~~V~~~g~~~~L~Tqlyf~ 117 (158)
T cd03459 93 RAPHIHVSVFARGLLERLVTRLYFP 117 (158)
T ss_pred cCCEEEEEEECCCcccceEEeEecC
Confidence 35556777 4444444444
No 88
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=92.83 E-value=0.32 Score=46.65 Aligned_cols=66 Identities=27% Similarity=0.534 Sum_probs=46.2
Q ss_pred hcceeeEEeecCCCCCCc-ceEEEeceee------------------eeeeecCceeE-EeecCCCceeE----------
Q 037202 243 KTGVRGRIFSSDSGRPLP-GSITIKGINY------------------TVNAGRAFADY-YRLLTPGKRYE---------- 292 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~------------------~~~t~~~~G~y-~r~l~pG~~Y~---------- 292 (393)
..-++|+|+|. .|+||+ |.|.|-..+. .+.|+ .+|.| ++.+.|| .|.
T Consensus 120 ~l~v~G~V~D~-~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td-~~G~y~F~Ti~Pg-~Ypip~dGp~g~l 196 (277)
T cd03461 120 PCFVHGRVTDT-DGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTD-EDGRYAFRTLRPT-PYPIPTDGPVGKL 196 (277)
T ss_pred EEEEEEEEEcC-CCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeC-CCCCEEEEEECCC-CcCCCCCCcHHHH
Confidence 34589999997 899999 8888752111 24565 78998 5678898 775
Q ss_pred ---------------EEEEecCcceeeEEEEeCC
Q 037202 293 ---------------VMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 293 ---------------v~vs~~Gy~~~~~~v~v~~ 311 (393)
+.++++||.+.+..+-...
T Consensus 197 L~~~grh~~RpaHIHf~V~a~G~~~L~Tqlyf~~ 230 (277)
T cd03461 197 LKAMGRHPMRPAHIHFMVTAPGYRTLVTQIFDSG 230 (277)
T ss_pred HHhhhccCCCCCeEEEEEEcCCcCceEEeEecCC
Confidence 4566778876666665554
No 89
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=92.44 E-value=0.5 Score=42.96 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=33.1
Q ss_pred cceeeEEeecCCCCCCc-ceEEEecee-----------------------eeeeeecCceeE-EeecCCCceeE
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGIN-----------------------YTVNAGRAFADY-YRLLTPGKRYE 292 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~-----------------------~~~~t~~~~G~y-~r~l~pG~~Y~ 292 (393)
.-++|+|+|. +|+||+ |.|+|-..+ -.+.|+ .+|.| ++.+.|| .|.
T Consensus 40 l~l~G~V~D~-~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td-~~G~y~f~TI~Pg-~Yp 110 (193)
T TIGR02423 40 IRLEGRVLDG-DGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTD-ESGEFTFETVKPG-AVP 110 (193)
T ss_pred EEEEEEEECC-CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEEC-CCCCEEEEEEcCC-CcC
Confidence 4589999996 899999 888874211 013455 78888 5678998 774
No 90
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=92.25 E-value=1.2 Score=34.44 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=40.3
Q ss_pred cceeeEEeecCCCCCCc-ceEEEece----eeeeeeecCceeEEeecCCCceeEEEEEecCc
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGI----NYTVNAGRAFADYYRLLTPGKRYEVMASMPGY 300 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~----~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy 300 (393)
.-|.|+|+ .+|+|+. |-|.+-.. ...+.++ ..|+|--...|| +++|++-+++=
T Consensus 8 ~VItG~V~--~~G~Pv~gAyVRLLD~sgEFtaEvvts-~~G~FRFfaapG-~WtvRal~~~g 65 (85)
T PF07210_consen 8 TVITGRVT--RDGEPVGGAYVRLLDSSGEFTAEVVTS-ATGDFRFFAAPG-SWTVRALSRGG 65 (85)
T ss_pred EEEEEEEe--cCCcCCCCeEEEEEcCCCCeEEEEEec-CCccEEEEeCCC-ceEEEEEccCC
Confidence 34899997 4799998 88876532 2234565 899998889999 99999876443
No 91
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=91.69 E-value=0.64 Score=44.61 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=45.5
Q ss_pred hcceeeEEeecCCCCCCc-ceEEEe-----ce-e-----------e-eeeeecCceeE-EeecCCCceeE----------
Q 037202 243 KTGVRGRIFSSDSGRPLP-GSITIK-----GI-N-----------Y-TVNAGRAFADY-YRLLTPGKRYE---------- 292 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-a~V~v~-----g~-~-----------~-~~~t~~~~G~y-~r~l~pG~~Y~---------- 292 (393)
..-++|+|+|. +|+||+ |.|.|- |. + . .+.|+ .+|.| ++.+.|| .|.
T Consensus 132 pl~v~G~V~D~-~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TD-adG~y~F~TI~Pg-~YpiP~dGp~G~l 208 (281)
T TIGR02438 132 PLVFSGQVTDL-DGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIAD-DEGRFEITTMQPA-PYQIPTDGPTGKF 208 (281)
T ss_pred EEEEEEEEEcC-CCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeC-CCCCEEEEEECCC-CcCCCCCCchHHH
Confidence 34589999986 799999 888883 21 0 0 23455 78998 5668887 665
Q ss_pred ---------------EEEEecCcceeeEEEEeCC
Q 037202 293 ---------------VMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 293 ---------------v~vs~~Gy~~~~~~v~v~~ 311 (393)
+.++++||.+.+..+-...
T Consensus 209 L~~~Grh~~RpaHIHf~V~a~G~~~LtTqiyf~g 242 (281)
T TIGR02438 209 IAAAGGHPWRPAHLHLKVSAPGHELITTQLYFKG 242 (281)
T ss_pred HHhcccCCCCCCEEEEEEECCCcceEEEeEecCC
Confidence 4566777777666665554
No 92
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=91.22 E-value=0.62 Score=42.06 Aligned_cols=46 Identities=22% Similarity=0.555 Sum_probs=32.5
Q ss_pred cceeeEEeecCCCCCCc-ceEEEecee------------------e----eeeeecCceeE-EeecCCCceeE
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGIN------------------Y----TVNAGRAFADY-YRLLTPGKRYE 292 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~------------------~----~~~t~~~~G~y-~r~l~pG~~Y~ 292 (393)
.-++|+|+|. +|+||+ |.|.|-..+ . .+.|+ .+|.| ++.+.|| .|.
T Consensus 37 l~l~G~V~D~-~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD-~~G~y~F~Ti~Pg-~Y~ 106 (185)
T cd03463 37 ITLEGRVYDG-DGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATD-ADGRFSFTTVKPG-AVP 106 (185)
T ss_pred EEEEEEEECC-CCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEEC-CCCCEEEEEEcCC-CcC
Confidence 4589999997 799999 888875211 0 13455 77888 5668888 775
No 93
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=90.68 E-value=1.1 Score=41.66 Aligned_cols=45 Identities=31% Similarity=0.563 Sum_probs=32.1
Q ss_pred cceeeEEeecCCCCCCc-ceEEEecee----------------------e-eeeeecCceeE-EeecCCCcee
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGIN----------------------Y-TVNAGRAFADY-YRLLTPGKRY 291 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~----------------------~-~~~t~~~~G~y-~r~l~pG~~Y 291 (393)
.-++|+|+|. +|+||+ |.|+|-..+ . .+.|+ .+|.| ++.+.|| .|
T Consensus 66 i~l~G~V~D~-~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD-~~G~y~F~TI~Pg-~Y 135 (220)
T cd03464 66 IIVHGRVLDE-DGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTD-DDGYYRFRTIKPG-AY 135 (220)
T ss_pred EEEEEEEECC-CCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEEC-CCccEEEEEECCC-Cc
Confidence 4588999996 899999 888875211 0 13454 77888 5668888 77
No 94
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=90.38 E-value=1 Score=41.81 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=32.3
Q ss_pred cceeeEEeecCCCCCCc-ceEEEecee----------------------e-eeeeecCceeE-EeecCCCcee
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGIN----------------------Y-TVNAGRAFADY-YRLLTPGKRY 291 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~----------------------~-~~~t~~~~G~y-~r~l~pG~~Y 291 (393)
.-++|+|+|. +|+||+ |.|+|-..+ . .+.|+ .+|.| ++.+.|| .|
T Consensus 61 i~l~G~V~D~-~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD-~~G~y~F~TI~PG-~Y 130 (220)
T TIGR02422 61 IIVHGRVLDE-DGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTD-SDGYYRFRTIKPG-PY 130 (220)
T ss_pred EEEEEEEECC-CCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEEC-CCccEEEEEECCC-Cc
Confidence 4588999997 799999 888875211 0 13355 78888 5668898 77
No 95
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=89.98 E-value=2.9 Score=33.45 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=32.8
Q ss_pred cceeeEEeecCCC---CCCcceEEEece-----------eeeeeeecCceeEEee-cCCCceeEEEEEecC----cceee
Q 037202 244 TGVRGRIFSSDSG---RPLPGSITIKGI-----------NYTVNAGRAFADYYRL-LTPGKRYEVMASMPG----YKPKS 304 (393)
Q Consensus 244 ~Gi~G~V~d~~~g---~Pi~a~V~v~g~-----------~~~~~t~~~~G~y~r~-l~pG~~Y~v~vs~~G----y~~~~ 304 (393)
..++|+|... .| .|..+.+.|.-. ..-+.++ .+|.|... +.|| +|+|++-.+| |...+
T Consensus 3 G~VsG~l~l~-dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td-~~G~Fti~~V~pG-tY~L~ay~~g~~g~~~~~~ 79 (95)
T PF14686_consen 3 GSVSGRLTLS-DGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTD-SDGNFTIPNVRPG-TYRLYAYADGIFGDYKVAS 79 (95)
T ss_dssp BEEEEEEE----SS--TT--S-EEEEEE--------SS-EEEEE---TTSEEE---B-SE-EEEEEEEE----TTEEEEE
T ss_pred CEEEEEEEEc-cCcccCccceeEEEEeeeccccccCCCCcEEEEeC-CCCcEEeCCeeCc-EeEEEEEEecccCceEEec
Confidence 4588998643 23 344333333311 1234465 89999655 9999 9999998854 33334
Q ss_pred EEEEeCC
Q 037202 305 TSIWLEE 311 (393)
Q Consensus 305 ~~v~v~~ 311 (393)
.+|+|..
T Consensus 80 ~~ItV~~ 86 (95)
T PF14686_consen 80 DSITVSG 86 (95)
T ss_dssp EEEEE-T
T ss_pred ceEEEcC
Confidence 5677765
No 96
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=87.01 E-value=3.3 Score=33.28 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=40.8
Q ss_pred ceeeEEeecCCCCCCc-ceEEE--ec----eee---eeeeecCceeEE---eecCCCceeEEEEEecCcceeeEEEEe
Q 037202 245 GVRGRIFSSDSGRPLP-GSITI--KG----INY---TVNAGRAFADYY---RLLTPGKRYEVMASMPGYKPKSTSIWL 309 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~-a~V~v--~g----~~~---~~~t~~~~G~y~---r~l~pG~~Y~v~vs~~Gy~~~~~~v~v 309 (393)
.+.-.|.|+ .|+|++ ..|.. .. ... ...|+ .+|.+. ..-.+| .|+|+++..|-.....++.|
T Consensus 26 tltatV~D~-~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td-~~G~a~~tltst~aG-~~~VtA~~~~~~~~~~~~~v 100 (100)
T PF02369_consen 26 TLTATVTDA-NGNPVPGQPVTFSSSSSGGTLSPTNTSATTD-SNGIATVTLTSTKAG-TYTVTATVDGGSTSVTSVTV 100 (100)
T ss_dssp EEEEEEEET-TSEB-TS-EEEE--EESSSEES-CEE-EEE--TTSEEEEEEE-SS-E-EEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcC-CCCCCCCCEEEEEEcCCCcEEecCccccEEC-CCEEEEEEEEecCce-EEEEEEEECCcceeEEeeeC
Confidence 478899997 899999 67777 21 111 24565 899983 346789 99999999988777666543
No 97
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=2 Score=46.71 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=50.4
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEe--ecCCCceeEEEEEecCcceeeEEEEeC
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYR--LLTPGKRYEVMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r--~l~pG~~Y~v~vs~~Gy~~~~~~v~v~ 310 (393)
..+.|+|.+...|.|+. +.|.|.|... ..|+ .+|.|-. ++..| +|+|++.++-|+=.+.++.+.
T Consensus 316 fSvtGRVl~g~~g~~l~gvvvlvngk~~-~kTd-aqGyykLen~~t~g-tytI~a~kehlqFstv~~kv~ 382 (1165)
T KOG1948|consen 316 FSVTGRVLVGSKGLPLSGVVVLVNGKSG-GKTD-AQGYYKLENLKTDG-TYTITAKKEHLQFSTVHAKVK 382 (1165)
T ss_pred EEeeeeEEeCCCCCCccceEEEEcCccc-ceEc-ccceEEeeeeeccC-cEEEEEeccceeeeeEEEEec
Confidence 45889999988899999 7888888654 4566 8999943 37889 999999998877666665554
No 98
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=85.06 E-value=4.3 Score=31.88 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred ceeeEEeecCCCCCCc-ceEEEe--ce------eeeeeeecCceeEE---eecCCCceeEEEEEecCcceeeE
Q 037202 245 GVRGRIFSSDSGRPLP-GSITIK--GI------NYTVNAGRAFADYY---RLLTPGKRYEVMASMPGYKPKST 305 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~-a~V~v~--g~------~~~~~t~~~~G~y~---r~l~pG~~Y~v~vs~~Gy~~~~~ 305 (393)
-+.-.|.|+ .|+|++ ..|.+. |- +....++ .+|... +.-.+| .++|+++..|+.+...
T Consensus 21 ~i~v~v~D~-~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td-~~G~a~~~l~~~~~G-~~~vta~~~~~~~~~~ 90 (92)
T smart00634 21 TLTATVTDA-NGNPVAGQEVTFTTPSGGALTLSKGTATTD-ANGIATVTLTSTTAG-VYTVTASLENGSSSVK 90 (92)
T ss_pred EEEEEEECC-CCCCcCCCEEEEEECCCceeeccCCeeeeC-CCCEEEEEEECCCCc-EEEEEEEECCCcceee
Confidence 377888887 899999 565543 32 1223454 788873 335678 9999999999877654
No 99
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.32 E-value=1.5 Score=40.79 Aligned_cols=65 Identities=23% Similarity=0.466 Sum_probs=40.5
Q ss_pred hcceeeEEeecCCCCCCc-ceEEEe-----ce-e----------------eeeeeecCceeE-EeecCCCceeEEEEEec
Q 037202 243 KTGVRGRIFSSDSGRPLP-GSITIK-----GI-N----------------YTVNAGRAFADY-YRLLTPGKRYEVMASMP 298 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-a~V~v~-----g~-~----------------~~~~t~~~~G~y-~r~l~pG~~Y~v~vs~~ 298 (393)
...++|+|+|. +|+|++ |.|+|- |. + -.+.|+ ++|.| ++.+.|| .|-..--.+
T Consensus 72 ~i~l~G~VlD~-~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td-~~G~y~F~Ti~Pg-~yp~~~~~~ 148 (226)
T COG3485 72 RILLEGRVLDG-NGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITD-EDGEYRFRTIKPG-PYPWRNGGP 148 (226)
T ss_pred eEEEEEEEECC-CCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeC-CCceEEEEEeecc-cccCCCCCC
Confidence 45699999998 799999 888874 21 1 013465 88998 5779998 664432222
Q ss_pred CcceeeEEEEeC
Q 037202 299 GYKPKSTSIWLE 310 (393)
Q Consensus 299 Gy~~~~~~v~v~ 310 (393)
=..+..+.+.|.
T Consensus 149 ~~R~aHih~~v~ 160 (226)
T COG3485 149 MWRPAHIHFSVF 160 (226)
T ss_pred cCccceeEEEEe
Confidence 223344444443
No 100
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=81.26 E-value=2.7 Score=38.18 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=26.2
Q ss_pred CceeEEe--ecCCCceeEEEEEecCcceeeEEEEeC
Q 037202 277 AFADYYR--LLTPGKRYEVMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 277 ~~G~y~r--~l~pG~~Y~v~vs~~Gy~~~~~~v~v~ 310 (393)
..|.-.- .|.|| +|+|+.|+.||...+..+.|.
T Consensus 264 ssG~~vTNgqLsaG-tYtVTySAsGY~DVTqtlvVT 298 (301)
T PF06488_consen 264 SSGNVVTNGQLSAG-TYTVTYSASGYADVTQTLVVT 298 (301)
T ss_pred CCCcEeecCcccCc-eEEEEEeccccccccceEEEe
Confidence 4455433 49999 999999999999998887664
No 101
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=80.91 E-value=7.1 Score=28.62 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=27.5
Q ss_pred eeeecCceeE-EeecCCCceeEEEEEe--cCcceeeEE--EEeCC
Q 037202 272 VNAGRAFADY-YRLLTPGKRYEVMASM--PGYKPKSTS--IWLEE 311 (393)
Q Consensus 272 ~~t~~~~G~y-~r~l~pG~~Y~v~vs~--~Gy~~~~~~--v~v~~ 311 (393)
.+|+ .+|.| +..|+|| .|.|+-.. .||...... +++..
T Consensus 21 ~~Td-~~G~~~f~~L~~G-~Y~l~E~~aP~GY~~~~~~~~~~i~~ 63 (70)
T PF05738_consen 21 VTTD-ENGKYTFKNLPPG-TYTLKETKAPDGYQLDDTPYEFTITE 63 (70)
T ss_dssp EEGG-TTSEEEEEEEESE-EEEEEEEETTTTEEEEECEEEEEECT
T ss_pred EEEC-CCCEEEEeecCCe-EEEEEEEECCCCCEECCCceEEEEec
Confidence 4455 89999 5669999 99997655 999876544 44443
No 102
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=79.32 E-value=5.2 Score=33.44 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=35.4
Q ss_pred ceEEEeceee---eeeeecCceeE-EeecCCCceeEEEEEecCcceeeEEEEeC
Q 037202 261 GSITIKGINY---TVNAGRAFADY-YRLLTPGKRYEVMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 261 a~V~v~g~~~---~~~t~~~~G~y-~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~ 310 (393)
..|.+.|-.+ .+... .+|.| +..+++| +|.|.+.+..|.=....|+|.
T Consensus 10 t~V~L~~g~~~~~~~~v~-~dG~F~f~~Vp~G-sY~L~V~s~~~~F~~~RVdV~ 61 (123)
T PF09430_consen 10 TRVTLNGGQYRPISAFVR-SDGSFVFHNVPPG-SYLLEVHSPDYVFPPYRVDVS 61 (123)
T ss_pred EEEEEeCCCccceEEEec-CCCEEEeCCCCCc-eEEEEEECCCccccCEEEEEe
Confidence 5677765544 44444 89999 5669999 999999997776665666665
No 103
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=79.24 E-value=6.2 Score=28.52 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=19.7
Q ss_pred EeceeeeeeeecCce-eE-EeecCCCceeEEEEEe
Q 037202 265 IKGINYTVNAGRAFA-DY-YRLLTPGKRYEVMASM 297 (393)
Q Consensus 265 v~g~~~~~~t~~~~G-~y-~r~l~pG~~Y~v~vs~ 297 (393)
+.|.+..+....... .. |..|+|| +|++.|.+
T Consensus 14 l~g~d~~W~~~~~~~~~~~~~~L~~G-~Y~l~V~a 47 (66)
T PF07495_consen 14 LEGFDDEWITLGSYSNSISYTNLPPG-KYTLEVRA 47 (66)
T ss_dssp EETTESSEEEESSTS-EEEEES--SE-EEEEEEEE
T ss_pred EECCCCeEEECCCCcEEEEEEeCCCE-EEEEEEEE
Confidence 556655554442333 33 7789999 99999987
No 104
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=76.06 E-value=9.7 Score=31.44 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=46.3
Q ss_pred eeeEEeecCCCCCCc-ceEEEeceee-------eeeeecCceeEEe------ecCCCceeEEEEEecCcceeeEEEEeCC
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGINY-------TVNAGRAFADYYR------LLTPGKRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~~-------~~~t~~~~G~y~r------~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
|+=.|.|...|.|-+ ..|.+...+. ...|+ .+|+.-- .+.|| .|+|++....|-.... +..
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn-~DGR~~~~l~~~~~~~~G-~Y~l~F~~g~Yf~~~~---~~~ 77 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTN-ADGRCPDLLPEGETLAAG-IYKLRFDTGDYFAARG---VET 77 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEEC-CCCCCcCcccCcccCCCe-eEEEEEEhhhhhhhcC---CCC
Confidence 566789988999998 5676643211 23455 8999842 35789 9999999888875311 122
Q ss_pred ---ceEEEEEEc
Q 037202 312 ---TATADFILD 320 (393)
Q Consensus 312 ---~~~~~f~L~ 320 (393)
...+.|.+.
T Consensus 78 F~p~v~i~F~i~ 89 (112)
T TIGR02962 78 FYPEVEVVFTIA 89 (112)
T ss_pred CccceEEEEEEC
Confidence 455677665
No 105
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=74.03 E-value=3.5 Score=34.61 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcc
Q 037202 353 FHMEVCFVLIVIGALLCFLLKRRQKF 378 (393)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
=-|.+-+++|+++++++|+++|+.|-
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36777888888888888888776654
No 106
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=72.55 E-value=6.3 Score=43.14 Aligned_cols=59 Identities=25% Similarity=0.478 Sum_probs=40.7
Q ss_pred hcceeeEEeecCCCCCCcceEEEece---eeeeeeecCceeE-EeecCCCceeEEEEEecCccee
Q 037202 243 KTGVRGRIFSSDSGRPLPGSITIKGI---NYTVNAGRAFADY-YRLLTPGKRYEVMASMPGYKPK 303 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~a~V~v~g~---~~~~~t~~~~G~y-~r~l~pG~~Y~v~vs~~Gy~~~ 303 (393)
..+++|+|.-+..|-|--..|+.... -..+.|+ .+|.| ++.+.|| +|.|.++++-++-.
T Consensus 118 GFsv~GkVlgaaggGpagV~velrs~e~~iast~T~-~~Gky~f~~iiPG-~Yev~ashp~w~~~ 180 (1165)
T KOG1948|consen 118 GFSVRGKVLGAAGGGPAGVLVELRSQEDPIASTKTE-DGGKYEFRNIIPG-KYEVSASHPAWECI 180 (1165)
T ss_pred eeeEeeEEeeccCCCcccceeecccccCcceeeEec-CCCeEEEEecCCC-ceEEeccCcceeEe
Confidence 45789999665333333345555433 3345565 89999 7889999 99999999777643
No 107
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=66.90 E-value=6.7 Score=31.82 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccccc-ccCCC
Q 037202 354 HMEVCFVLIVIGALLCFLLKRRQKFTLGK-HKQSP 387 (393)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 387 (393)
+||+-+++++++..+|...+||.+.++.. +||++
T Consensus 23 ~FWlv~~liill~c~c~~~~~r~r~~~~~q~rq~e 57 (102)
T PF11669_consen 23 YFWLVWVLIILLSCCCACRHRRRRRRLQQQQRQRE 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 67776566666667777777887766653 34443
No 108
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=66.49 E-value=16 Score=32.96 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=37.6
Q ss_pred cceeeEEeecCCCCCCc-ceEEEece---------eeeeeeecCceeE-EeecCCCceeEEEEEe
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGI---------NYTVNAGRAFADY-YRLLTPGKRYEVMASM 297 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~---------~~~~~t~~~~G~y-~r~l~pG~~Y~v~vs~ 297 (393)
..+..+|+- .|+|++ +.|.+... ....+|| .+|.+ +.+..|| .|-|.+++
T Consensus 151 ~~~~~~vl~--~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD-~~G~~~~~~~~~G-~wli~a~~ 211 (215)
T PF10670_consen 151 DPLPFQVLF--DGKPLAGAEVEAFSPGGWYDVEHEAKTLKTD-ANGRATFTLPRPG-LWLIRASH 211 (215)
T ss_pred CEEEEEEEE--CCeEcccEEEEEEECCCccccccceEEEEEC-CCCEEEEecCCCE-EEEEEEEE
Confidence 347888875 699999 78877533 3346676 89999 4557999 99998876
No 109
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=65.98 E-value=2 Score=35.25 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhccccccc
Q 037202 361 LIVIGALLCFLLKRRQKFTLGKH 383 (393)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
+.++|++-|+.||||.-||.++.
T Consensus 36 LgiLLliGCWYckRRSGYk~L~~ 58 (118)
T PF14991_consen 36 LGILLLIGCWYCKRRSGYKTLRD 58 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHhheeeeecchhhhhhh
Confidence 34456677999999999998854
No 110
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=62.66 E-value=47 Score=31.63 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=35.3
Q ss_pred CCc-ceEEE-e-ceeeeee-eecCc--eeEE----eecCCCceeEEEEEecCcceeeEEEEeCC
Q 037202 258 PLP-GSITI-K-GINYTVN-AGRAF--ADYY----RLLTPGKRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 258 Pi~-a~V~v-~-g~~~~~~-t~~~~--G~y~----r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
++. |+|+| . +...... ..... |.|+ ....+|++|+|+|+.+|....+-..++..
T Consensus 59 ~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~~~~~sa~~~vp~ 122 (298)
T PF14054_consen 59 PVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPGGKTYSAETTVPP 122 (298)
T ss_pred ccCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECCCCEEEEEEEECC
Confidence 366 88888 3 3222221 11122 7776 24788999999999988888776666665
No 111
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=61.33 E-value=62 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=34.0
Q ss_pred CCcceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcc---eeeEEEEeCC
Q 037202 258 PLPGSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYK---PKSTSIWLEE 311 (393)
Q Consensus 258 Pi~a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~---~~~~~v~v~~ 311 (393)
.+.-.|.|+|.-.+- ....+.++..++|| +|+|.++..... ....++++..
T Consensus 40 ~~~~~v~vdg~~ig~--l~~g~y~~~~v~pG-~h~i~~~~~~~~~~~~~~l~~~~~~ 93 (117)
T PF11008_consen 40 AVKPDVYVDGELIGE--LKNGGYFYVEVPPG-KHTISAKSEFSSSPGANSLDVTVEA 93 (117)
T ss_pred cccceEEECCEEEEE--eCCCeEEEEEECCC-cEEEEEecCccCCCCccEEEEEEcC
Confidence 334578888876543 22455567889999 899998655332 3666677766
No 112
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=60.45 E-value=14 Score=28.63 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhccc
Q 037202 354 HMEVCFVLIVIGALLCFLLKRRQKFT 379 (393)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
-||+.+.+.|+++||.+++.-++..-
T Consensus 41 ~FWv~LA~FV~~lF~iL~~ms~sgsp 66 (90)
T PF15183_consen 41 AFWVSLAAFVVFLFLILLYMSWSGSP 66 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 69999999999999999998887654
No 113
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=55.29 E-value=41 Score=31.84 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=35.8
Q ss_pred cceeeEEeecCCCCCCc-ceEEEecee-----------------eeeeeecCceeE-EeecCCCceeEEEEEe
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGIN-----------------YTVNAGRAFADY-YRLLTPGKRYEVMASM 297 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~-----------------~~~~t~~~~G~y-~r~l~pG~~Y~v~vs~ 297 (393)
.-++|+|++. |+|++ |+|.+.-.+ ....|| ++|.| +.++..| .+.+.+-.
T Consensus 172 e~f~~~vl~~--GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD-~kG~~~fip~r~G-~W~~~~~~ 240 (264)
T COG5266 172 EVFRGKVLDN--GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTD-DKGEVSFIPLRAG-VWGFAVEH 240 (264)
T ss_pred CeEEEEEEEC--CccCCCcEEEEEEecccccccccccCCCCCcceEEEcC-CCceEEEEEccCc-eEEEEeec
Confidence 3489999985 99999 898877211 113355 88888 6678888 88777655
No 114
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=52.62 E-value=53 Score=36.05 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=64.1
Q ss_pred eeeEEeecCCCCCCc-ceEEEeceeee---eeeecCceeEEee--cCCCceeEEEEEecCcceeeEEEEeCC---ceEEE
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGINYT---VNAGRAFADYYRL--LTPGKRYEVMASMPGYKPKSTSIWLEE---TATAD 316 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~~~---~~t~~~~G~y~r~--l~pG~~Y~v~vs~~Gy~~~~~~v~v~~---~~~~~ 316 (393)
+|=+|.|+.+-.||+ |.|.|=+.... .+|+ .+|.-... -.+|-.-+|+++..||.+....-.... -..|.
T Consensus 3 lKV~V~d~~t~qpl~~A~V~V~~N~t~~~s~~t~-~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~Pw~~~rlPv~ssvs 81 (807)
T PF10577_consen 3 LKVQVSDASTRQPLSDASVEVFGNQTLTASGTTG-NDGVVLLKFPYRLGTWLIVTASKDGYVPNSVPWKTSRLPVYSSVS 81 (807)
T ss_pred EEEEEecccCcccCCCCeEEEEeceeEeecceec-CCceEEEEEeccCCCeEEEEEecCCccCCCCCcccccccccccee
Confidence 677899998889999 98888654322 2344 56665433 455656788999999999765433222 33445
Q ss_pred EEEccCCC---CCCCCccccCCCCCCcccceeehh
Q 037202 317 FILDPDSA---LEDNTPRSICDCSCDSKAKLVLLE 348 (393)
Q Consensus 317 f~L~~~~~---~l~eVv~~~~~~~~~~~~~~~~v~ 348 (393)
..|-|+.+ -+-|-++-++...-..+.+|. |+
T Consensus 82 L~Llp~r~a~l~lyeD~v~I~~~~~~~~~qP~-V~ 115 (807)
T PF10577_consen 82 LSLLPERQATLWLYEDVVQITGGSPGARSQPS-VQ 115 (807)
T ss_pred eeeeccCcceEEEEeeeeeeeccCCCCCCCCE-EE
Confidence 55555543 234555666666666667775 44
No 115
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=47.95 E-value=81 Score=24.08 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=29.0
Q ss_pred CCcceEEEeceeeeeeeecCceeE-EeecCCCceeEEEEEe----cCccee--eEEEEeCC
Q 037202 258 PLPGSITIKGINYTVNAGRAFADY-YRLLTPGKRYEVMASM----PGYKPK--STSIWLEE 311 (393)
Q Consensus 258 Pi~a~V~v~g~~~~~~t~~~~G~y-~r~l~pG~~Y~v~vs~----~Gy~~~--~~~v~v~~ 311 (393)
|-.|.|.+.|..... +. ..=.| -+.|.+|+.|.-++.+ .| ... +.+|.+..
T Consensus 10 PadAkl~v~G~~t~~-~G-~~R~F~T~~L~~G~~y~Y~v~a~~~~dG-~~~t~~~~V~vrA 67 (75)
T TIGR03000 10 PADAKLKVDGKETNG-TG-TVRTFTTPPLEAGKEYEYTVTAEYDRDG-RILTRTRTVVVRA 67 (75)
T ss_pred CCCCEEEECCeEccc-Cc-cEEEEECCCCCCCCEEEEEEEEEEecCC-cEEEEEEEEEEcC
Confidence 433889998875321 11 11123 4679999777666555 67 443 34466655
No 116
>COG1470 Predicted membrane protein [Function unknown]
Probab=47.69 E-value=69 Score=33.04 Aligned_cols=61 Identities=20% Similarity=0.408 Sum_probs=45.6
Q ss_pred eeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecC-cceeeEEEEeCC
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPG-YKPKSTSIWLEE 311 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~G-y~~~~~~v~v~~ 311 (393)
.+=+++|. +|.|++ |-|..+.... .++ ..|.=-+.+.|| .|.+.+...| |+.....|.+..
T Consensus 189 ~~l~~vd~-~G~gv~~~~v~~g~e~~--ets-~~g~~~~e~t~g-~y~~~i~~~g~ye~~~~av~l~d 251 (513)
T COG1470 189 SKLRLVDD-DGAGVPKALVKDGNESF--ETS-SKGNLEVEITPG-KYVVLIAKKGIYEKKKRAVKLND 251 (513)
T ss_pred EEEEEEcc-CCCccchheeecCceeE--Eee-cccceeEEecCc-ceEEEeccccceecceEEEEcCC
Confidence 44456665 899999 6665554433 244 567778889999 9999999999 888888888876
No 117
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=47.27 E-value=32 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=21.6
Q ss_pred ccccCCCCCCcccceeehhhhhhhhhHHHHHHHHHHHHHHH
Q 037202 330 PRSICDCSCDSKAKLVLLEFLLGFHMEVCFVLIVIGALLCF 370 (393)
Q Consensus 330 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
-.-.+.|..++++.- .+.|+.-||++|+||.|+|-
T Consensus 23 p~qdyEc~KDdsc~~------iG~fLlWyfviilvLm~~~r 57 (243)
T PF15468_consen 23 PNQDYECRKDDSCGA------IGSFLLWYFVIILVLMFFSR 57 (243)
T ss_pred CCcchhhccCCccch------hhhHHHHHHHHHHHHHHHHH
Confidence 344566665554443 26788888888877554443
No 118
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=47.07 E-value=67 Score=26.50 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=45.6
Q ss_pred eeeEEeecCCCCCCc-ceEEEecee-------eeeeeecCceeEEe------ecCCCceeEEEEEecCcceeeEEEEeCC
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGIN-------YTVNAGRAFADYYR------LLTPGKRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~-------~~~~t~~~~G~y~r------~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
|.=.|.|...|.|-+ -.|.+.-.+ ....|+ .+|..-. .+.+| .|+|++....|-.... ...
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td-~DGR~~~~~~~~~~~~~G-~Y~l~F~~~~Yf~~~~---~~~ 77 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTN-ADGRCDDLLPPGAQLAAG-TYKLTFDTGAYFAARG---QES 77 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEEC-CCCCccCcccccccCCCe-eEEEEEEhhhhhhhcC---CCc
Confidence 566788988999987 456554221 123455 8898732 36679 9999999888876422 111
Q ss_pred ---ceEEEEEEcc
Q 037202 312 ---TATADFILDP 321 (393)
Q Consensus 312 ---~~~~~f~L~~ 321 (393)
...+.|.++.
T Consensus 78 F~p~V~i~F~i~~ 90 (112)
T cd05822 78 FYPEVEVRFTITD 90 (112)
T ss_pred cceeeEEEEEECC
Confidence 4456666664
No 119
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=41.32 E-value=25 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.0
Q ss_pred CCCceeEEEEEecCcceeeEE
Q 037202 286 TPGKRYEVMASMPGYKPKSTS 306 (393)
Q Consensus 286 ~pG~~Y~v~vs~~Gy~~~~~~ 306 (393)
..| .|+|++.+.||...+.+
T Consensus 45 ~~G-~~~I~I~A~GY~d~~~~ 64 (65)
T PF07550_consen 45 KDG-ENTIVIKATGYKDKTFT 64 (65)
T ss_pred cCC-ceEEEEEeCCccceEEE
Confidence 568 99999999999887654
No 120
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.29 E-value=25 Score=29.53 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=4.1
Q ss_pred hhhhcccc
Q 037202 373 KRRQKFTL 380 (393)
Q Consensus 373 ~~~~~~~~ 380 (393)
+||.+..+
T Consensus 24 rRR~r~G~ 31 (130)
T PF12273_consen 24 RRRRRRGL 31 (130)
T ss_pred HHHhhcCC
Confidence 55555443
No 121
>PHA03265 envelope glycoprotein D; Provisional
Probab=40.90 E-value=21 Score=35.15 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=32.4
Q ss_pred CCCCCCcccceeehhhhhhhhhHHHHHHHHHHHHHHHHhhhhhccccccccCCC
Q 037202 334 CDCSCDSKAKLVLLEFLLGFHMEVCFVLIVIGALLCFLLKRRQKFTLGKHKQSP 387 (393)
Q Consensus 334 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
-..+.+++++++.=- ---..-.++++|+++|||..+||-..|-..+.-++
T Consensus 338 ~~~~~s~~~~~~~g~----~ig~~i~glv~vg~il~~~~rr~k~~~k~~~~~~~ 387 (402)
T PHA03265 338 KPPPTSKSNSTFVGI----SVGLGIAGLVLVGVILYVCLRRKKELKKSAQNGLT 387 (402)
T ss_pred CCCCCCCCCCcccce----EEccchhhhhhhhHHHHHHhhhhhhhhhhhhcCCh
Confidence 344566677776421 12244578899999999999998777655444333
No 122
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=40.89 E-value=36 Score=28.04 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=36.4
Q ss_pred eeeEEeecCCCCCCc-ceEEEecee--------eeeeeecCceeE--E----eecCCCceeEEEEEecCcce
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGIN--------YTVNAGRAFADY--Y----RLLTPGKRYEVMASMPGYKP 302 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~--------~~~~t~~~~G~y--~----r~l~pG~~Y~v~vs~~Gy~~ 302 (393)
|+=.|.|...|.|-+ ..|.+...+ ....|+ .+|.. + ..+.+| .|+|++....|-.
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td-~DGR~~~~~~~~~~~~~G-~Y~l~F~~~~Yf~ 72 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTD-ADGRIKQPLLEGESLEPG-IYKLVFDTGDYFA 72 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBE-TTSEESSTSSETTTS-SE-EEEEEEEHHHHHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEEC-CCCcccccccccccccce-EEEEEEEHHHhHh
Confidence 566789998999988 466655333 224465 89998 2 236789 9999998755544
No 123
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=40.89 E-value=43 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=15.1
Q ss_pred CCCceeEEEEEecCcceeeEEEE
Q 037202 286 TPGKRYEVMASMPGYKPKSTSIW 308 (393)
Q Consensus 286 ~pG~~Y~v~vs~~Gy~~~~~~v~ 308 (393)
.|| .|.|++++.| .+++.+|+
T Consensus 46 ~~G-~y~Vt~~y~~-~t~t~~Vt 66 (67)
T PF07523_consen 46 KAG-TYTVTYTYKG-VTATFTVT 66 (67)
T ss_dssp S-C-CEEEEEEECT-EEEEEEEE
T ss_pred CCc-eEEEEEEECC-EEEEEEEE
Confidence 689 9999999999 44454444
No 124
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=40.76 E-value=2e+02 Score=23.34 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=43.6
Q ss_pred ceEEEeceeeeeeeecCceeE--EeecCCCceeEEEEEecCccee------eEEEEeCCceEEEEEEccCCC-CCCCCcc
Q 037202 261 GSITIKGINYTVNAGRAFADY--YRLLTPGKRYEVMASMPGYKPK------STSIWLEETATADFILDPDSA-LEDNTPR 331 (393)
Q Consensus 261 a~V~v~g~~~~~~t~~~~G~y--~r~l~pG~~Y~v~vs~~Gy~~~------~~~v~v~~~~~~~f~L~~~~~-~l~eVv~ 331 (393)
-.|.+.|.. ..++-.+|+. +..++|| +|+|++...|=.+. ..++++...+.-.+.+..... .+.-.+.
T Consensus 16 vdv~~dg~~--~~~~v~y~~~s~Y~~v~~G-~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~~~~~~~~~~ 92 (122)
T PF14344_consen 16 VDVYVDGTK--VFSNVAYGQASDYLPVPPG-TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTAAGNPSLLVI 92 (122)
T ss_pred EEEEECCEE--EEccCCCCcccCceEECCc-eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCCCCCeeEEEE
Confidence 356666654 2233344544 7889999 99999988777732 334666653333443433322 3444555
Q ss_pred ccCCCCCCc
Q 037202 332 SICDCSCDS 340 (393)
Q Consensus 332 ~~~~~~~~~ 340 (393)
.+..++...
T Consensus 93 ~D~~~~~~~ 101 (122)
T PF14344_consen 93 EDDLSPPPP 101 (122)
T ss_pred ecCCCCCCC
Confidence 555554333
No 125
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=40.30 E-value=99 Score=24.24 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=28.6
Q ss_pred hcceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEec
Q 037202 243 KTGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMP 298 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~ 298 (393)
..|.+-...|. .+.|.+ ..|.... ++ +.-..-.-+....|.|| +|+|++...
T Consensus 19 ~tgh~hlliD~-~~~~~~~~~I~~~~-n~-vhy~~Gqte~~I~L~PG-~htLtl~~~ 71 (87)
T PF14347_consen 19 GTGHHHLLIDG-DGPPLANEPIPFNI-NG-VHYGKGQTELNIELPPG-KHTLTLQLG 71 (87)
T ss_pred CCccEEEEECC-CCCcCCCCeeeecC-Ce-EEeCCCEEEEEEEeCCC-CEEEEEEeC
Confidence 34556666675 566666 3443331 11 11111222335669999 999998773
No 126
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=39.64 E-value=18 Score=29.13 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhccccccc
Q 037202 353 FHMEVCFVLIVIGALLCFLLKRRQKFTLGKH 383 (393)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
..+...+.++++++++||++.|..+-+-.+|
T Consensus 7 ~~~~~ll~~vl~~~ifyFli~RPQrKr~K~~ 37 (97)
T COG1862 7 SGLVLLLPLVLIFAIFYFLIIRPQRKRMKEH 37 (97)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3566677788888999999999877654443
No 127
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=39.55 E-value=1.6e+02 Score=22.78 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=29.7
Q ss_pred ceEEEeceeeeeeeecCceeEEeecC-----CCceeEEEEEecCcceeeEEEEe
Q 037202 261 GSITIKGINYTVNAGRAFADYYRLLT-----PGKRYEVMASMPGYKPKSTSIWL 309 (393)
Q Consensus 261 a~V~v~g~~~~~~t~~~~G~y~r~l~-----pG~~Y~v~vs~~Gy~~~~~~v~v 309 (393)
+++.-+|.-++....+ .|..-..+. +| .|+|++.+.-|.+...+|++
T Consensus 30 ValS~dg~l~G~ai~~-sG~ati~l~~~it~~~-~~tlTit~~n~~t~i~~i~V 81 (81)
T PF03785_consen 30 VALSQDGDLYGKAIVN-SGNATINLTNPITDEG-TLTLTITAFNYVTYIKTIQV 81 (81)
T ss_dssp EEEEETTEEEEEEE-B-TTEEEEE-SS--TT-S-EEEEEEE-TTB--EEEEEEE
T ss_pred EEEecCCEEEEEEEec-CceEEEECCcccCCCc-eEEEEEEEEccEEEEEEeeC
Confidence 4455556655555543 888876666 58 99999999999998887764
No 128
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=36.95 E-value=33 Score=30.97 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=19.6
Q ss_pred hcceeeEEeecCCCCCCc-ceEEEe
Q 037202 243 KTGVRGRIFSSDSGRPLP-GSITIK 266 (393)
Q Consensus 243 ~~Gi~G~V~d~~~g~Pi~-a~V~v~ 266 (393)
..-++|+|+|..+++|++ |.|.|-
T Consensus 26 pl~l~g~V~D~~~c~Pv~~a~VdiW 50 (188)
T cd03457 26 PLTLDLQVVDVATCCPPPNAAVDIW 50 (188)
T ss_pred EEEEEEEEEeCCCCccCCCeEEEEe
Confidence 345799999976899999 888874
No 129
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=36.64 E-value=1e+02 Score=25.75 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=45.7
Q ss_pred ceeeEEeecCCCCCCc-ceEEEecee--------eeeeeecCceeEEe-----ecCCCceeEEEEEecCcceeeEEEEeC
Q 037202 245 GVRGRIFSSDSGRPLP-GSITIKGIN--------YTVNAGRAFADYYR-----LLTPGKRYEVMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~-a~V~v~g~~--------~~~~t~~~~G~y~r-----~l~pG~~Y~v~vs~~Gy~~~~~~v~v~ 310 (393)
.|.=.|.|..+|.|-+ ..|.+.... ....|+ .+|+--. .+.+| .|+|++..-.|-... ..+
T Consensus 8 ~ittHVLDt~~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn-~DGR~~~ll~~~~~~~G-~Y~l~F~tg~Yf~~~---~~~ 82 (121)
T cd05821 8 PLMVKVLDAVRGSPAANVAVKVFKKTADGSWEPFASGKTT-ETGEIHGLTTDEQFTEG-VYKVEFDTKAYWKKL---GIS 82 (121)
T ss_pred CcEEEEEECCCCccCCCCEEEEEEecCCCceEEEEEEEEC-CCCCCCCccCccccCCe-eEEEEEehhHhhhhc---CCC
Confidence 4677899999999988 466653221 123455 8888732 25689 999999887776531 112
Q ss_pred C---ceEEEEEEc
Q 037202 311 E---TATADFILD 320 (393)
Q Consensus 311 ~---~~~~~f~L~ 320 (393)
. ...+.|.+.
T Consensus 83 ~F~p~V~I~F~i~ 95 (121)
T cd05821 83 PFHEYAEVVFTAN 95 (121)
T ss_pred CCCceEEEEEEEC
Confidence 2 455677765
No 130
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=35.97 E-value=1.2e+02 Score=24.98 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=44.9
Q ss_pred eeeEEeecCCCCCCc-ceEEEecee--------eeeeeecCceeEEe-----ecCCCceeEEEEEecCcceeeEEEEeCC
Q 037202 246 VRGRIFSSDSGRPLP-GSITIKGIN--------YTVNAGRAFADYYR-----LLTPGKRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 246 i~G~V~d~~~g~Pi~-a~V~v~g~~--------~~~~t~~~~G~y~r-----~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
|+=.|.|...|.|-+ -.|.+.-.+ ....|+ .+|.--. .+.+| .|+|++....|-... ....
T Consensus 3 lStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn-~DGR~~~~l~~~~~~~G-~Y~l~F~t~~Yf~~~---~~~~ 77 (113)
T cd05469 3 LMVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTN-EDGELHGLITEEEFXAG-VYRVEFDTKSYWKAL---GITP 77 (113)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEEC-CCCCccCccccccccce-EEEEEEehHHhHhhC---CCCC
Confidence 456788998999988 456553211 123455 8898732 35689 999999887776531 1222
Q ss_pred ---ceEEEEEEcc
Q 037202 312 ---TATADFILDP 321 (393)
Q Consensus 312 ---~~~~~f~L~~ 321 (393)
...+.|.++.
T Consensus 78 F~p~V~i~F~v~d 90 (113)
T cd05469 78 FHEYAEVVFTAND 90 (113)
T ss_pred CcceEEEEEEECC
Confidence 4556777753
No 131
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=35.71 E-value=39 Score=34.23 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.9
Q ss_pred eeehhhhhhhhhHHHHHHHHHHHHHHHHhhhhhcc
Q 037202 344 LVLLEFLLGFHMEVCFVLIVIGALLCFLLKRRQKF 378 (393)
Q Consensus 344 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
..|=+=++.+.|++.|+|-+|+..+||++-.|++.
T Consensus 59 vlpNHGlhaagFfvaflvslVL~~l~~f~l~r~~~ 93 (429)
T PF12297_consen 59 VLPNHGLHAAGFFVAFLVSLVLTWLCFFLLARTRC 93 (429)
T ss_pred eccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444478999999999999999999998877653
No 132
>COG1470 Predicted membrane protein [Function unknown]
Probab=35.59 E-value=3.2e+02 Score=28.42 Aligned_cols=66 Identities=23% Similarity=0.185 Sum_probs=35.0
Q ss_pred cceeeEEeecCCCCCCc-ceEEEeceeeeeeeecCceeEEeecCCCceeEEEEEecCcceeeEEEEeCC-----ceEEEE
Q 037202 244 TGVRGRIFSSDSGRPLP-GSITIKGINYTVNAGRAFADYYRLLTPGKRYEVMASMPGYKPKSTSIWLEE-----TATADF 317 (393)
Q Consensus 244 ~Gi~G~V~d~~~g~Pi~-a~V~v~g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~Gy~~~~~~v~v~~-----~~~~~f 317 (393)
.++++.|... -+.|+. -.+.|++-.- +... -++.=...|.|| ++.+...+|+++. .-.++|
T Consensus 399 ~~i~i~I~Ns-Gna~LtdIkl~v~~Pqg-Wei~-Vd~~~I~sL~pg----------e~~tV~ltI~vP~~a~aGdY~i~i 465 (513)
T COG1470 399 KTIRISIENS-GNAPLTDIKLTVNGPQG-WEIE-VDESTIPSLEPG----------ESKTVSLTITVPEDAGAGDYRITI 465 (513)
T ss_pred ceEEEEEEec-CCCccceeeEEecCCcc-ceEE-ECcccccccCCC----------CcceEEEEEEcCCCCCCCcEEEEE
Confidence 3577777654 355776 6777765322 2221 233334457888 3444555666665 334555
Q ss_pred EEccC
Q 037202 318 ILDPD 322 (393)
Q Consensus 318 ~L~~~ 322 (393)
+-..+
T Consensus 466 ~~ksD 470 (513)
T COG1470 466 TAKSD 470 (513)
T ss_pred EEeec
Confidence 55444
No 133
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=35.25 E-value=23 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhccccccc
Q 037202 360 VLIVIGALLCFLLKRRQKFTLGKH 383 (393)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
.++++++++||++.|+.+-+-..|
T Consensus 9 ~lv~i~~i~yF~~iRPQkKr~K~~ 32 (109)
T PRK05886 9 PFLLIMGGFMYFASRRQRKAMQAT 32 (109)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHH
Confidence 344556777888888876654433
No 134
>KOG3641 consensus Zinc carboxypeptidase [Amino acid transport and metabolism]
Probab=35.03 E-value=25 Score=36.89 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=26.5
Q ss_pred ChHHHHhhcCeEEEEEeccCcccccccccCCCCCCCCCCCC
Q 037202 62 DSLARLIVENMHLHILPSMNPDGYALKRRGNANNIDLNRDF 102 (393)
Q Consensus 62 d~~~~~ll~~~~i~ivP~~NPDG~~~~~R~N~~gvDLNRNf 102 (393)
|+....|.+ +.+ +||+.|||||....+.. .+|..||.+
T Consensus 153 de~~~~l~~-~~v-~Vp~l~P~~~~~~~~~t-rsV~e~~~~ 190 (650)
T KOG3641|consen 153 DERNQTLRR-LFV-FVPMLNPDGVVRGHYNT-RSVNENRQY 190 (650)
T ss_pred chhhhhHhh-hee-eeeccCCcEEEEEeeec-cccccccce
Confidence 444455554 333 39999999998764433 899999976
No 135
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=34.80 E-value=1e+02 Score=24.01 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred eecCceeE---EeecCCCceeEEEEEecCc
Q 037202 274 AGRAFADY---YRLLTPGKRYEVMASMPGY 300 (393)
Q Consensus 274 t~~~~G~y---~r~l~pG~~Y~v~vs~~Gy 300 (393)
++..+|.| |.+-.+| .|+|.+...|-
T Consensus 51 ~d~~dGty~v~y~P~~~G-~~~i~V~~~g~ 79 (93)
T smart00557 51 KDNGDGTYTVSYTPTEPG-DYTVTVKFGGE 79 (93)
T ss_pred EeCCCCEEEEEEEeCCCE-eEEEEEEECCE
Confidence 34467777 6778888 99998877763
No 136
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=31.00 E-value=3.1e+02 Score=26.06 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=42.0
Q ss_pred HhcceeEEEecCCCceecccC-------------CCCCCCHHHHHHHHHHHHHHh-ccccCCCccccceeccceeEecCC
Q 037202 128 RQIHFTASASLHGVISLIQRY-------------YYGCPDDEAFQFLASVYSRSH-YNMSLSTEFQGGIINGASWYPIYG 193 (393)
Q Consensus 128 ~~~~~~~~idlHsg~~~~p~~-------------y~~~pd~~~~~~la~~~~~~~-~~m~~~~~y~~g~~~~~~~y~~~G 193 (393)
.++...+.+|.||.-...|.. +..+.+.++.+.+...+.... .....+..|.+|
T Consensus 136 ~~~g~~~liD~HSm~s~~p~~~~g~~pd~~lG~~~G~s~~~~l~~~l~~~l~~~~g~~v~~N~Py~Gg------------ 203 (263)
T TIGR02017 136 AQHGYAVLYDAHSIRSVIPRLFEGKLPDFNIGTNDGASCDPALTDAVEAVCAKATGYSHVLNGRFKGG------------ 203 (263)
T ss_pred HhCCCEEEEEeccCCccCCCcCCCCCCCEEEeCCCCCCCCHHHHHHHHHHHHhcCCceEEeCCCCCCc------------
Confidence 344789999999764322111 111235556666666553211 111123444443
Q ss_pred Cccccccc--cCCceEEEEEecCCCCCCC
Q 037202 194 GMQDWNYI--YGGCFELTLEISDDKWPSA 220 (393)
Q Consensus 194 ~~~Dw~y~--~~~~~~~T~El~~~~~p~~ 220 (393)
..-=.|. ..++.++-+||...-|..+
T Consensus 204 -~itr~yg~p~~~vhaiQiEi~r~lYm~e 231 (263)
T TIGR02017 204 -WITRHYGQPQNGVHAVQMELAQRGYMAE 231 (263)
T ss_pred -ceecccCCCCCCCceEeeeEchhhhcCC
Confidence 2211333 4589999999997655544
No 137
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=30.55 E-value=58 Score=22.90 Aligned_cols=19 Identities=26% Similarity=0.043 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 037202 355 MEVCFVLIVIGALLCFLLK 373 (393)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~ 373 (393)
.|+||+++.++.--|.+.+
T Consensus 3 wWvY~vi~gI~~S~ym~v~ 21 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVK 21 (52)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5899999888877666655
No 138
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=29.68 E-value=3.2e+02 Score=24.86 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHHHHHHHhc-ceeEEEecCCCceec----------c-----c-CCCCCCCHHHHHHHHHHHHHHhccccCCCccccce
Q 037202 120 TRAIMSWVRQI-HFTASASLHGVISLI----------Q-----R-YYYGCPDDEAFQFLASVYSRSHYNMSLSTEFQGGI 182 (393)
Q Consensus 120 t~ai~~~~~~~-~~~~~idlHsg~~~~----------p-----~-~y~~~pd~~~~~~la~~~~~~~~~m~~~~~y~~g~ 182 (393)
-+.+.+.+++. .++++||+|-.+.-. + + .-...|+.+.-.++|..+...... .|+ |.
T Consensus 70 r~tv~~~l~~~p~i~~viDiHRDs~~~~~~t~~inG~~~Aki~fVvG~~np~~~~N~~fA~~l~~~~~~-----~yP-gl 143 (196)
T TIGR02867 70 RETVKKALKENKDLKYIIDLHRDSVRRKKTTVNINGESVAKVMFVIGKNNPHFEKNLQLANKLHAKLEK-----KYP-GL 143 (196)
T ss_pred HHHHHHHHHHCCCceEEEEeecCCCCCCcceEEECCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-----hCC-Cc
Confidence 34556666666 579999999865310 0 1 112346666666666665544322 222 23
Q ss_pred eccceeEecCCCccccccccCCceEEEEEecCCC
Q 037202 183 INGASWYPIYGGMQDWNYIYGGCFELTLEISDDK 216 (393)
Q Consensus 183 ~~~~~~y~~~G~~~Dw~y~~~~~~~~T~El~~~~ 216 (393)
+.|- +.-.++-..|+ +...+.++.+|+|...
T Consensus 144 ~rgi--~~k~~~~~~YN-Qdl~~~alLiEiG~~~ 174 (196)
T TIGR02867 144 SRGI--FYKDYGNGVYN-QDLSPNAILIEVGGVD 174 (196)
T ss_pred ccce--EEccCCCCccc-ccCCCCeEEEEECCCC
Confidence 3321 22111222233 5678899999999754
No 139
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=28.92 E-value=87 Score=28.66 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=22.6
Q ss_pred ceeehhhhhhhhhHHHHHHHHHHHHHHHHhhhhhccc
Q 037202 343 KLVLLEFLLGFHMEVCFVLIVIGALLCFLLKRRQKFT 379 (393)
Q Consensus 343 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
.|++|-++. ..-++++++++.+.|++.+||++.+
T Consensus 99 ~~~lI~lv~---~g~~lLla~~~~~~Y~~~~Rrs~~~ 132 (202)
T PF06365_consen 99 YPTLIALVT---SGSFLLLAILLGAGYCCHQRRSWSK 132 (202)
T ss_pred ceEEEehHH---hhHHHHHHHHHHHHHHhhhhccCCc
Confidence 456666554 2223566677778899999998753
No 140
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=28.66 E-value=57 Score=20.18 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 037202 356 EVCFVLIVIGALLCFLLKRR 375 (393)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~ 375 (393)
.+..+++++++.++++.|||
T Consensus 13 ~~~~G~~l~~~~~~~~~~rk 32 (34)
T TIGR01167 13 LLLLGLLLLGLGGLLLRKRK 32 (34)
T ss_pred HHHHHHHHHHHHHHHheecc
Confidence 33444444444444444444
No 141
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=28.62 E-value=70 Score=19.22 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 037202 359 FVLIVIGALLCFLLKRRQ 376 (393)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~ 376 (393)
+.++.++++..++++||.
T Consensus 8 ~~Ll~~~l~~l~~~rRr~ 25 (26)
T TIGR03778 8 LALLGLGLLGLLGLRRRX 25 (26)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 345555666667777764
No 142
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=28.47 E-value=2.5e+02 Score=22.23 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=31.9
Q ss_pred ceeeEEeecCCCCCCc-ceEEEec-eee----eeeeecCceeEEeecCCCceeEEEEE
Q 037202 245 GVRGRIFSSDSGRPLP-GSITIKG-INY----TVNAGRAFADYYRLLTPGKRYEVMAS 296 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~-a~V~v~g-~~~----~~~t~~~~G~y~r~l~pG~~Y~v~vs 296 (393)
++.=+|.+-.+|+|++ |.|.+-+ .+. ..+|+ .+|......... .+-+.++
T Consensus 14 ~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD-~~G~a~~~~~~~-~~~viA~ 69 (97)
T PF11974_consen 14 GLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTD-ADGFASFDSTKK-PFLVIAR 69 (97)
T ss_pred CEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeC-CCceEEecCCCC-CEEEEEE
Confidence 3455676778999999 8998855 221 34566 788885554433 5555555
No 143
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=28.08 E-value=80 Score=19.25 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 037202 355 MEVCFVLIVIGALLCFLLKRR 375 (393)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (393)
+.+-|.+++|-++|++++-|.
T Consensus 8 l~lnftvvlitvilmwllvrs 28 (31)
T PF05366_consen 8 LFLNFTVVLITVILMWLLVRS 28 (31)
T ss_dssp SHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhhhHHHHHHHHHHHHHHh
Confidence 456688888889999988774
No 144
>smart00095 TR_THY Transthyretin.
Probab=28.02 E-value=1.9e+02 Score=24.22 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=44.7
Q ss_pred ceeeEEeecCCCCCCc-ceEEEecee--------eeeeeecCceeEEe-----ecCCCceeEEEEEecCcceeeEEEEeC
Q 037202 245 GVRGRIFSSDSGRPLP-GSITIKGIN--------YTVNAGRAFADYYR-----LLTPGKRYEVMASMPGYKPKSTSIWLE 310 (393)
Q Consensus 245 Gi~G~V~d~~~g~Pi~-a~V~v~g~~--------~~~~t~~~~G~y~r-----~l~pG~~Y~v~vs~~Gy~~~~~~v~v~ 310 (393)
.|.=.|.|...|.|-+ -.|.+--.. ....|+ .+|.--. .+.+| .|+|++..-.|-... ...
T Consensus 5 plTtHVLDt~~G~PAagv~V~L~~~~~~~~w~~la~~~Tn-~DGR~~~ll~~~~~~~G-~Y~l~F~tg~Yf~~~---~~~ 79 (121)
T smart00095 5 PLMVKVLDAVRGSPAVNVAVKVFKKTEEGTWEPFASGKTN-ESGEIHELTTDEKFVEG-LYKVEFDTKSYWKAL---GIS 79 (121)
T ss_pred CeEEEEEECCCCccCCCCEEEEEEeCCCCceEEEEEEecC-CCccccCccCcccccce-EEEEEEehhHhHhhc---CCC
Confidence 3677899999999988 466653211 123454 8888832 35689 999999876666431 112
Q ss_pred C---ceEEEEEEc
Q 037202 311 E---TATADFILD 320 (393)
Q Consensus 311 ~---~~~~~f~L~ 320 (393)
. ...+.|.+.
T Consensus 80 ~F~p~V~V~F~i~ 92 (121)
T smart00095 80 PFHEYADVVFTAN 92 (121)
T ss_pred CCCceEEEEEEEC
Confidence 2 445667665
No 145
>COG3741 HutG N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=27.63 E-value=2.5e+02 Score=26.81 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=37.9
Q ss_pred ceeEEEecCCCceecccC-------------CCCCCCHHHHHHHHHHHHHHhcc-ccCCCccccceeccceeEecCCCcc
Q 037202 131 HFTASASLHGVISLIQRY-------------YYGCPDDEAFQFLASVYSRSHYN-MSLSTEFQGGIINGASWYPIYGGMQ 196 (393)
Q Consensus 131 ~~~~~idlHsg~~~~p~~-------------y~~~pd~~~~~~la~~~~~~~~~-m~~~~~y~~g~~~~~~~y~~~G~~~ 196 (393)
...+.+|-||--...|.. +-.+++.+.. .++.....+... -..+..|++|-+..
T Consensus 145 G~avLiDcHSm~s~ip~l~~G~lPdfniGt~~G~sc~~~lt-~~a~~~~~a~gys~vlNgrykGG~iT~----------- 212 (272)
T COG3741 145 GAAVLIDCHSMRSHIPRLFEGPLPDFNIGTRFGKSCDPALT-RAAEVALEALGYSVVLNGRYKGGFITR----------- 212 (272)
T ss_pred CeEEEEeccccccccccccCCCCCceeeccCCCCCCCHHHH-HHHHHHHHhhccchhhcCCccCccccC-----------
Confidence 678899999965443321 1123344433 333333332211 11245677764421
Q ss_pred ccccccCCceEEEEEecCCCCC
Q 037202 197 DWNYIYGGCFELTLEISDDKWP 218 (393)
Q Consensus 197 Dw~y~~~~~~~~T~El~~~~~p 218 (393)
-|---..++.++.+||.+..+-
T Consensus 213 hYGrP~~~~HAlQiEl~~~~ym 234 (272)
T COG3741 213 HYGRPARGVHALQIELARSLYM 234 (272)
T ss_pred CCCCchhhhHHHHHHHhhhhcc
Confidence 1221245667778888776543
No 146
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=27.29 E-value=89 Score=30.31 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=25.3
Q ss_pred EEEEccCCCCCCCCccccCCCCCCcccceeehhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 037202 316 DFILDPDSALEDNTPRSICDCSCDSKAKLVLLEFLLGFHMEVCFVLIVIGALLCFLLKRR 375 (393)
Q Consensus 316 ~f~L~~~~~~l~eVv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
++.|++=...-+. --+...|+-+...-.+| + -....+.+++|++++.+++.||
T Consensus 245 ~lqvQaF~~~~~~-Fg~a~~C~~D~~~~~vP--I----aVG~~La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 245 DLQVQAFRVKNNT-FGTAEECSSDDTSDLVP--I----AVGAALAGLVLIVLIAYLIGRR 297 (306)
T ss_pred EEEEEEEEecCCC-CCChhcCCcCCccchHH--H----HHHHHHHHHHHHHHHhheeEec
Confidence 4555544333333 34445666555433333 2 2344455555555555555554
No 147
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=26.48 E-value=1.3e+02 Score=19.65 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=12.9
Q ss_pred ehhhhhhhhhHHHHHHHHHHHHHHHHh
Q 037202 346 LLEFLLGFHMEVCFVLIVIGALLCFLL 372 (393)
Q Consensus 346 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (393)
+..||--..-.+-|+++..++++||.+
T Consensus 6 l~dfylc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 6 LFDFYLCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333334444555555556544
No 148
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=26.18 E-value=1.9e+02 Score=21.15 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=22.5
Q ss_pred EeecCCCCCCc--ceEEEe-ceeeeeeeecCceeEEeecCCCceeEEEEEecC
Q 037202 250 IFSSDSGRPLP--GSITIK-GINYTVNAGRAFADYYRLLTPGKRYEVMASMPG 299 (393)
Q Consensus 250 V~d~~~g~Pi~--a~V~v~-g~~~~~~t~~~~G~y~r~l~pG~~Y~v~vs~~G 299 (393)
+.++ +|.|++ |.|.-. |...++ .. .+|.-|..-.+. .=+|+|+..+
T Consensus 3 l~~~-~G~~lPfGA~v~~~~g~~~g~-Vg-~~G~vyl~~~~~-~~~L~V~w~~ 51 (68)
T PF13953_consen 3 LRDA-DGKPLPFGASVSDEDGNNIGI-VG-QDGQVYLSGLPP-KGTLTVKWGD 51 (68)
T ss_dssp EEET-TSEE--TT-EEEETTSSEEEE-B--GCGEEEEEEE-T-CEEEEEESTS
T ss_pred EEcC-CCCcCCCCcEEEcCCCCEEEE-Ec-CCCEEEEECCCC-CcEEEEEECC
Confidence 4454 899999 666653 333333 33 677766553333 3466665533
No 149
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.11 E-value=34 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhhhccccc
Q 037202 359 FVLIVIGALLCFLLKRRQKFTLG 381 (393)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
+.++++++++||+..|..+-+-.
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k 29 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRK 29 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHH
Confidence 34555677788888776655433
No 150
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=23.68 E-value=98 Score=25.42 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=17.9
Q ss_pred ecCCCceeEEEEEe-cCcceeeEEE
Q 037202 284 LLTPGKRYEVMASM-PGYKPKSTSI 307 (393)
Q Consensus 284 ~l~pG~~Y~v~vs~-~Gy~~~~~~v 307 (393)
.+.|- +++|-||. .||.+.+.+.
T Consensus 18 Nitpe-ThTVSVSSTTGFrTfsTn~ 41 (130)
T PF02960_consen 18 NITPE-THTVSVSSTTGFRTFSTNS 41 (130)
T ss_pred CCCCC-CcccccccccceEEEeccc
Confidence 37788 99998877 8998877653
No 151
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=23.03 E-value=1.1e+02 Score=18.98 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=5.3
Q ss_pred hhHHHHHHHHH
Q 037202 354 HMEVCFVLIVI 364 (393)
Q Consensus 354 ~~~~~~~~~~~ 364 (393)
-.++|..++++
T Consensus 9 ~i~ly~~l~~~ 19 (29)
T TIGR03063 9 QIGLYAVLFLG 19 (29)
T ss_pred hHHHHHHHHHH
Confidence 34555555533
No 152
>PF15050 SCIMP: SCIMP protein
Probab=22.95 E-value=96 Score=25.85 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHHH------HHHHHHHHHhhhhh
Q 037202 350 LLGFHMEVCFVLI------VIGALLCFLLKRRQ 376 (393)
Q Consensus 350 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 376 (393)
.|..+||+-+-|. +++++||-.|++.+
T Consensus 3 WWr~nFWiiLAVaII~vS~~lglIlyCvcR~~l 35 (133)
T PF15050_consen 3 WWRDNFWIILAVAIILVSVVLGLILYCVCRWQL 35 (133)
T ss_pred hHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788765443 34556666677554
No 153
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=22.85 E-value=1e+02 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.4
Q ss_pred eeEEEEEecCcceeeEEEEeCC
Q 037202 290 RYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 290 ~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
.|.|.+..+||.+..++|++..
T Consensus 8 ~~~v~~dlpG~~~edI~V~v~~ 29 (83)
T cd06478 8 RFSVNLDVKHFSPEELSVKVLG 29 (83)
T ss_pred eEEEEEECCCCCHHHeEEEEEC
Confidence 8999999999999999999876
No 154
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.02 E-value=1.6e+02 Score=23.22 Aligned_cols=7 Identities=14% Similarity=0.633 Sum_probs=3.3
Q ss_pred hhHHHHH
Q 037202 354 HMEVCFV 360 (393)
Q Consensus 354 ~~~~~~~ 360 (393)
||-++.+
T Consensus 37 ~lvI~~i 43 (94)
T PF05393_consen 37 FLVICGI 43 (94)
T ss_pred HHHHHHH
Confidence 4555543
No 155
>PF13115 YtkA: YtkA-like
Probab=21.93 E-value=3.1e+02 Score=20.59 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=12.4
Q ss_pred CCCCCCc-ceEEEecee
Q 037202 254 DSGRPLP-GSITIKGIN 269 (393)
Q Consensus 254 ~~g~Pi~-a~V~v~g~~ 269 (393)
.+|+|+. |.|.+....
T Consensus 30 ~~g~pv~~a~V~~~~~m 46 (86)
T PF13115_consen 30 QGGKPVTDADVQFEIWM 46 (86)
T ss_pred CCCCCCCCCEEEEEEEe
Confidence 4899999 888877543
No 156
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=21.83 E-value=1e+02 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=20.8
Q ss_pred ceeEEEEEecCcceeeEEEEeCC
Q 037202 289 KRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 289 ~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
+.|.|++..+||.+..++|++..
T Consensus 7 ~~~~v~~dlpG~~~edI~V~v~~ 29 (83)
T cd06477 7 PMFQILLDVVQFRPEDIIIQVFE 29 (83)
T ss_pred ceEEEEEEcCCCCHHHeEEEEEC
Confidence 38999999999999999999876
No 157
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.70 E-value=92 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCC
Q 037202 360 VLIVIGALLCFLLKRRQKFTLGKHKQSP 387 (393)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
+|+++.+||.+++.|=.+.-|--+|.-|
T Consensus 33 FV~~L~~fL~~liVRCfrIllDPYssmP 60 (81)
T PF11057_consen 33 FVGLLCLFLGLLIVRCFRILLDPYSSMP 60 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcCC
Confidence 4445566777777776666555555544
No 158
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.62 E-value=96 Score=21.23 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhccccccccCCC
Q 037202 352 GFHMEVCFVLIVIGALLCFLLKRRQKFTLGKHKQSP 387 (393)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
..++-+.|+++++++..+..-+| -+-+.-...+.|
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~-~k~~~e~aa~lp 45 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPR-NKKRFEEAANLP 45 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc-chhhHHHHHccC
Confidence 34555566666666665555433 355454444444
No 159
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=21.50 E-value=1e+02 Score=23.88 Aligned_cols=23 Identities=13% Similarity=0.481 Sum_probs=20.5
Q ss_pred ceeEEEEEecCcceeeEEEEeCC
Q 037202 289 KRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 289 ~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
+.|.|++..+||.+..++|++..
T Consensus 7 d~~~v~~dlpG~~~edI~V~v~~ 29 (87)
T cd06481 7 EGFSLKLDVRGFSPEDLSVRVDG 29 (87)
T ss_pred ceEEEEEECCCCChHHeEEEEEC
Confidence 38999999999999999998875
No 160
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=21.31 E-value=98 Score=23.80 Aligned_cols=23 Identities=9% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceeEEEEEecCcceeeEEEEeCC
Q 037202 289 KRYEVMASMPGYKPKSTSIWLEE 311 (393)
Q Consensus 289 ~~Y~v~vs~~Gy~~~~~~v~v~~ 311 (393)
+.|.|.+-.+||.|..++|++..
T Consensus 8 ~~~~v~~dlpG~~pedi~V~v~~ 30 (81)
T cd06479 8 DTYQFAVDVSDFSPEDIIVTTSN 30 (81)
T ss_pred CeEEEEEECCCCCHHHeEEEEEC
Confidence 48999999999999999999886
No 161
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=21.15 E-value=76 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccc
Q 037202 357 VCFVLIVIGALLCFLLKRRQKFTLG 381 (393)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
..+.++++++++||+..|..+-+-.
T Consensus 4 ~li~lv~~~~i~yf~~~rpqkk~~k 28 (82)
T PF02699_consen 4 MLIPLVIIFVIFYFLMIRPQKKQQK 28 (82)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheecHHHHHHH
Confidence 3445557777888888877665433
No 162
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.64 E-value=1e+02 Score=24.06 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 037202 356 EVCFVLIVIGALLCFLLKRR 375 (393)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~ 375 (393)
.+++.++++++..++.++||
T Consensus 72 li~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444555554
Done!