BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037204
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N7W|A Chain A, Crystal Structure Of Human Serum Transferrin, N-Lobe L66w
Mutant
Length = 331
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 87 YVYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPR 145
+VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 66 WVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRS 125
Query: 146 WSVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 126 AGWNIPIGLLYCDL 139
>pdb|1OQH|A Chain A, Crystal Structure Of The R124a Mutant Of The N-lobe Human
Transferrin
Length = 337
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGASA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1D4N|A Chain A, Human Serum Transferrin
Length = 329
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 65 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 124
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 125 GWNIPIGLLYCDL 137
>pdb|1D3K|A Chain A, Human Serum Transferrin
Length = 329
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 65 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 124
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 125 GWNIPIGLLYCDL 137
>pdb|1SUV|C Chain C, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|D Chain D, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1A8E|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe
pdb|1A8F|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe
Length = 329
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 65 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 124
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 125 GWNIPIGLLYCDL 137
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In
Pichia Pastoris
Length = 330
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 64 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 123
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 124 GWNIPIGLLYCDL 136
>pdb|1N7X|A Chain A, Human Serum Transferrin, N-Lobe Y45e Mutant
Length = 331
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q
Length = 334
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|3FGS|A Chain A, Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE N-Lobe
Human Transferrin
Length = 337
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e
Length = 334
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|2O7U|B Chain B, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|A Chain A, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|C Chain C, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|D Chain D, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|E Chain E, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|F Chain F, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|G Chain G, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|H Chain H, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|I Chain I, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
Length = 337
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1N84|A Chain A, Human Serum Transferrin, N-Lobe
Length = 331
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1OQG|A Chain A, Crystal Structure Of The D63e Mutant Of The N-Lobe Human
Transferrin
Length = 337
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1RYO|A Chain A, Human Serum Transferrin, N-Lobe Bound With Oxalate
Length = 327
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|2O84|X Chain X, Crystal Structure Of K206e Mutant Of N-Lobe Human
Transferrin
Length = 337
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|C Chain C, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|D Chain D, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BTJ|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
pdb|1BTJ|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
Length = 337
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|2QU7|A Chain A, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
pdb|2QU7|B Chain B, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
Length = 288
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 33 SSSKYTRDQISIAFGDAYGNQIYAPRL 59
S + +D I + F D+Y N+IY P+L
Sbjct: 209 SEKEIKKDVIIVGFDDSYWNEIYTPKL 235
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 64 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQXNQLRGKKSCHTGLGRSA 123
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 124 GWNIPIGLLYCDL 136
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 86 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 145
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 146 GWNIPIGLLYCDL 158
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 81 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 140
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 141 GWNIPIGLLYCDL 153
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 64 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 123
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 124 GWNIPIGLLYCDL 136
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 VYLYRTGPDGWKPESVKIYGANSRAVSFYYN-TFIPSDIWYGFNLCRSASSAHQQHVPRW 146
VY P+ KP + YG+ +FYY + D + N R S H
Sbjct: 67 VYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSA 126
Query: 147 SVYVILGLLLCAL 159
+ +GLL C L
Sbjct: 127 GWNIPIGLLYCDL 139
>pdb|4E9L|A Chain A, Fdec, A Novel Broadly Conserved Escherichia Coli Adhesin
Eliciting Protection Against Urinary Tract Infections
Length = 420
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 4 KPRAFESFNVSYIQNLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDP 62
+P A E+ ++ I S + + ++ + + + T +++ DAYGN + + D P
Sbjct: 278 QPAATEAAQLTVIAGEMSSANSTLVADNKTPTVKTTTELTFTMKDAYGNPVTGLKPDAP 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,003,802
Number of Sequences: 62578
Number of extensions: 198527
Number of successful extensions: 298
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 27
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)