Query 037204
Match_columns 160
No_of_seqs 105 out of 150
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 3.7E-48 8.1E-53 296.7 13.1 115 18-132 10-125 (125)
2 cd01754 PLAT_plant_stress PLAT 100.0 2E-31 4.3E-36 205.1 12.8 107 22-128 1-122 (129)
3 cd01753 PLAT_LOX PLAT domain o 100.0 2.3E-28 5.1E-33 183.1 12.4 103 23-127 2-108 (113)
4 cd00113 PLAT PLAT (Polycystin- 100.0 6.7E-28 1.5E-32 177.6 13.3 109 22-132 1-114 (116)
5 cd01756 PLAT_repeat PLAT/LH2 d 99.9 3.9E-27 8.4E-32 176.9 13.2 103 23-126 2-109 (120)
6 cd01752 PLAT_polycystin PLAT/L 99.9 4.5E-27 9.7E-32 176.7 12.9 103 22-125 1-108 (120)
7 cd02899 PLAT_SR Scavenger rece 99.9 2.9E-25 6.4E-30 166.6 12.0 97 23-124 2-99 (109)
8 smart00308 LH2 Lipoxygenase ho 99.9 2.2E-23 4.9E-28 151.3 13.1 100 23-123 2-104 (105)
9 cd01757 PLAT_RAB6IP1 PLAT/LH2 99.9 1.2E-22 2.5E-27 153.7 12.2 95 23-127 2-101 (114)
10 PF01477 PLAT: PLAT/LH2 domain 99.9 9.9E-22 2.1E-26 142.5 6.9 101 24-127 1-106 (113)
11 cd01755 PLAT_lipase PLAT/ LH2 99.6 3.5E-14 7.7E-19 107.3 11.0 90 22-115 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 99.3 1.5E-11 3.3E-16 95.6 10.8 75 22-99 1-81 (137)
13 cd01759 PLAT_PL PLAT/LH2 domai 97.6 0.00091 2E-08 50.6 9.9 87 23-115 2-96 (113)
14 KOG2080 Uncharacterized conser 97.1 0.00055 1.2E-08 66.9 4.9 95 19-125 971-1069(1295)
15 TIGR03230 lipo_lipase lipoprot 96.4 0.028 6E-07 51.4 10.1 93 19-115 306-412 (442)
16 cd01751 PLAT_LH2 PLAT/ LH2 dom 77.0 27 0.00058 27.3 8.6 52 74-125 71-126 (137)
17 PF14147 Spore_YhaL: Sporulati 56.2 4.9 0.00011 26.8 0.6 18 143-160 1-18 (52)
18 PLN02264 lipoxygenase 42.2 1.3E+02 0.0028 30.5 8.1 52 74-125 159-213 (919)
19 PF10295 DUF2406: Uncharacteri 36.6 25 0.00053 24.7 1.6 24 46-69 32-55 (69)
20 PLN02337 lipoxygenase 32.0 2.2E+02 0.0048 28.8 7.9 52 74-125 96-151 (866)
21 smart00112 CA Cadherin repeats 25.1 1.3E+02 0.0029 19.5 3.7 32 21-52 44-77 (79)
22 PLN02305 lipoxygenase 24.9 2.2E+02 0.0047 29.1 6.5 54 74-127 155-211 (918)
23 PF02408 CUB_2: CUB-like domai 24.4 79 0.0017 23.3 2.7 36 18-53 40-79 (120)
24 KOG4714 Nucleoporin [Nuclear s 21.5 62 0.0013 28.7 1.8 25 69-93 290-317 (319)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=3.7e-48 Score=296.68 Aligned_cols=115 Identities=70% Similarity=1.386 Sum_probs=112.8
Q ss_pred cCCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCC-CCccCCcceeeeeecCCCCccEEEEEEEcCCC
Q 037204 18 NLGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPST-DAFESCSSDTFEIRGPCAYQICYVYLYRTGPD 96 (160)
Q Consensus 18 ~~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~-~~FErgs~DtF~v~g~clg~ic~l~L~~dg~d 96 (160)
+.++|+|+|+|||||+++|||+|+|||+|+|++||++++++||+|.+ ++||||++|+|+|+|+|+++||+|+|+|+|+|
T Consensus 10 ~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~lyL~r~G~d 89 (125)
T PF06232_consen 10 QAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYLYLYRSGSD 89 (125)
T ss_pred cCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccEEEEEEccCC
Confidence 67789999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCeEEEEeceecCCCCceecccC
Q 037204 97 GWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLC 132 (160)
Q Consensus 97 gW~~e~V~V~~~~~~~~~F~~n~WL~~~~~yg~n~C 132 (160)
||+||+|+|++.+.++++|++|+|||+++|||+|+|
T Consensus 90 GW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 90 GWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred CCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence 999999999999899999999999999999999999
No 2
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=2e-31 Score=205.09 Aligned_cols=107 Identities=28% Similarity=0.453 Sum_probs=95.0
Q ss_pred ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCC------CcCCCCccCCcceeeeeecCC-CCccEEEEEEEcC
Q 037204 22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLD------DPSTDAFESCSSDTFEIRGPC-AYQICYVYLYRTG 94 (160)
Q Consensus 22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld------~~~~~~FErgs~DtF~v~g~c-lg~ic~l~L~~dg 94 (160)
|.|+|+|+||++++|||||+|+|+|+|.+|++.....++ ++.++.||||++|+|.|..++ +|+||+|+|||||
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn 80 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG 80 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence 899999999999999999999999999999985544333 356899999999999998887 7999999999999
Q ss_pred C---CCceeeEEEEecC-C---CCeEEEEeceecCCCC-cee
Q 037204 95 P---DGWKPESVKIYGA-N---SRAVSFYYNTFIPSDI-WYG 128 (160)
Q Consensus 95 ~---dgW~~e~V~V~~~-~---~~~~~F~~n~WL~~~~-~yg 128 (160)
+ ++|||++|+|.+. . .+++.|+|||||+.|. +|.
T Consensus 81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~~ 122 (129)
T cd01754 81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPYM 122 (129)
T ss_pred CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcce
Confidence 9 9999999999975 2 3589999999999988 664
No 3
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.96 E-value=2.3e-28 Score=183.13 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CCc
Q 037204 23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DGW 98 (160)
Q Consensus 23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dgW 98 (160)
.|+|+|+||.+..|||+|+|+|.|.|++|++ ....|+++..+ ||||++|+|.+..+ ++|+|++|+|+||++ ++|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S-~~~~L~~~~~~-FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W 79 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGES-EKQLLDRPGYD-FERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW 79 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCcc-cCEEcCCCCCc-cCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence 6999999999999999999999999999987 67788887765 99999999999865 599999999999998 999
Q ss_pred eeeEEEEecCCCCeEEEEeceecCCCCce
Q 037204 99 KPESVKIYGANSRAVSFYYNTFIPSDIWY 127 (160)
Q Consensus 99 ~~e~V~V~~~~~~~~~F~~n~WL~~~~~y 127 (160)
||++|+|.++.++.+.|+||+||+.+.-+
T Consensus 80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~~~ 108 (113)
T cd01753 80 FCNYITVTGPGGDEYHFPCYRWIEGYGTL 108 (113)
T ss_pred eecEEEEEcCCCCEEEEEhHHeECCCCEE
Confidence 99999999877888999999999988743
No 4
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.95 E-value=6.7e-28 Score=177.56 Aligned_cols=109 Identities=35% Similarity=0.515 Sum_probs=97.1
Q ss_pred ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CC
Q 037204 22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DG 97 (160)
Q Consensus 22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dg 97 (160)
|.|+|+|+||+..+|||+++|+|.|+|++|++.....++++.. ||||++|+|.+..+ ++|+|+.|+|+||++ ++
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~~~~~~--f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~ 78 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPGS--FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG 78 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEccCCCCc--ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence 7899999999999999999999999999999965554444433 99999999999887 599999999999999 69
Q ss_pred ceeeEEEEecC-CCCeEEEEeceecCCCCceecccC
Q 037204 98 WKPESVKIYGA-NSRAVSFYYNTFIPSDIWYGFNLC 132 (160)
Q Consensus 98 W~~e~V~V~~~-~~~~~~F~~n~WL~~~~~yg~n~C 132 (160)
|||++|+|++. +.+.+.|+|++||+.+.+|..++|
T Consensus 79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence 99999999976 568999999999999998877665
No 5
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.95 E-value=3.9e-27 Score=176.89 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=96.0
Q ss_pred eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCc-CCCCccCCcceeeeeecCCCCccEEEEEEEcCC---CCc
Q 037204 23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDP-STDAFESCSSDTFEIRGPCAYQICYVYLYRTGP---DGW 98 (160)
Q Consensus 23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~-~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~---dgW 98 (160)
.|+|+|+||...+|||+|+|+|.|+|.+|++ ....|+++ ..+.||||++|+|.+..+.+|+|+.|+|+||++ ++|
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W 80 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDT-GKRKLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW 80 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCcc-ccEEccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence 6999999999999999999999999999987 77889887 778999999999999878899999999999999 899
Q ss_pred eeeEEEEecC-CCCeEEEEeceecCCCCc
Q 037204 99 KPESVKIYGA-NSRAVSFYYNTFIPSDIW 126 (160)
Q Consensus 99 ~~e~V~V~~~-~~~~~~F~~n~WL~~~~~ 126 (160)
||++|+|.+. +++.+.|+|++||+.+..
T Consensus 81 ~~~~V~V~~~~~~~~~~F~~~~Wl~~~~~ 109 (120)
T cd01756 81 FLDKVEIREPGTGDEYTFPCNRWLDKDED 109 (120)
T ss_pred EEeEEEEEECCCceEEEEEeCCccCCCCC
Confidence 9999999976 678899999999998763
No 6
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.95 E-value=4.5e-27 Score=176.74 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=95.2
Q ss_pred ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcCC---CC
Q 037204 22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTGP---DG 97 (160)
Q Consensus 22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg~---dg 97 (160)
..|+|+|+||...+|||+|+|+|.|+|.+|++ ....|.++.++.||||++|+|.+..+ .+|+|+.|+||||++ ++
T Consensus 1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~ 79 (120)
T cd01752 1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGES-EPHHLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPS 79 (120)
T ss_pred CEEEEEEEECCCCCCCcccEEEEEEEeCCCCc-ccEEcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCC
Confidence 36999999999999999999999999999987 66788888889999999999999865 599999999999998 99
Q ss_pred ceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204 98 WKPESVKIYGA-NSRAVSFYYNTFIPSDI 125 (160)
Q Consensus 98 W~~e~V~V~~~-~~~~~~F~~n~WL~~~~ 125 (160)
|||++|+|.+. +++...|+|++||+.+.
T Consensus 80 W~l~~V~V~~~~t~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 80 WYLSRVIVRDLQTGKKWFFLCNDWLSVEE 108 (120)
T ss_pred eEEEEEEEEECCCCcEEEEEeCcEECCcC
Confidence 99999999976 67889999999999875
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.93 E-value=2.9e-25 Score=166.60 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=88.8
Q ss_pred eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC-CCceee
Q 037204 23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP-DGWKPE 101 (160)
Q Consensus 23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~-dgW~~e 101 (160)
.|+|+|+||...+|||+++|+|.|.|..|.+ ....|++ .||||++|+|.+++.+||+|-.|+|.+++. |+|||+
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S-~~~~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~ 76 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRS-NPKTLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD 76 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCc-CCEEccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence 5999999999999999999999999999987 6667764 599999999999988899999999987777 999999
Q ss_pred EEEEecCCCCeEEEEeceecCCC
Q 037204 102 SVKIYGANSRAVSFYYNTFIPSD 124 (160)
Q Consensus 102 ~V~V~~~~~~~~~F~~n~WL~~~ 124 (160)
+|+|.++.++.+.|+|||||+..
T Consensus 77 ~V~V~~~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 77 YVRIKSEDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EEEEECCCCCEEEEEcceeeCCc
Confidence 99999987788999999999864
No 8
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.91 E-value=2.2e-23 Score=151.29 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=86.9
Q ss_pred eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecC-CCCccEEEEEEEcC-CCCcee
Q 037204 23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGP-CAYQICYVYLYRTG-PDGWKP 100 (160)
Q Consensus 23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~-clg~ic~l~L~~dg-~dgW~~ 100 (160)
.|+|+|+||.+..|||+|+|+|.|.|..|++ ....+....+..||||++|+|.+..+ .+|+|..|+|+||+ .++|||
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s-~~~~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l 80 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDG-KESKLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL 80 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCC-cceeccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence 6999999999999999999999999999753 33344333445699999999999776 49999999999999 599999
Q ss_pred eEEEEecC-CCCeEEEEeceecCC
Q 037204 101 ESVKIYGA-NSRAVSFYYNTFIPS 123 (160)
Q Consensus 101 e~V~V~~~-~~~~~~F~~n~WL~~ 123 (160)
++|+|.+. +.+...|+||+||..
T Consensus 81 ~~V~V~~~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 81 KSITVKDLPTGGKYHFPCNSWVYP 104 (105)
T ss_pred EEEEEEECCCCCEEEEEcCceeCC
Confidence 99999975 778999999999975
No 9
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.89 E-value=1.2e-22 Score=153.65 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=83.8
Q ss_pred eEEEEEEcCCC-CCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC---CCc
Q 037204 23 SYTVVITTSCS-SSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP---DGW 98 (160)
Q Consensus 23 ~Y~V~IkTg~~-~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~---dgW 98 (160)
.|+|+|+||.. ++|||+|+|+|.|+|..|++ ....|+++ .| .|.+....||++.+|+|||||+ ++|
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s-~~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W 71 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGET-PPLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW 71 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCc-CCEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence 59999999999 59999999999999999976 77788643 33 4777678899999999999999 999
Q ss_pred eeeEEEEec-CCCCeEEEEeceecCCCCce
Q 037204 99 KPESVKIYG-ANSRAVSFYYNTFIPSDIWY 127 (160)
Q Consensus 99 ~~e~V~V~~-~~~~~~~F~~n~WL~~~~~y 127 (160)
||++|+|.+ .+++.+.|+|||||+.+..=
T Consensus 72 fl~~V~V~d~~t~~~~~FpC~rWLa~~~~D 101 (114)
T cd01757 72 LVEYVMVRNEITGHTYKFPCGRWLGEGVDD 101 (114)
T ss_pred eeeEEEEEeCCCCCEEEEecCceecCCCCc
Confidence 999999998 47889999999999987743
No 10
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.85 E-value=9.9e-22 Score=142.54 Aligned_cols=101 Identities=26% Similarity=0.335 Sum_probs=87.0
Q ss_pred EEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeec-CCCCccEEEEEEEcCC---CCce
Q 037204 24 YTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRG-PCAYQICYVYLYRTGP---DGWK 99 (160)
Q Consensus 24 Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g-~clg~ic~l~L~~dg~---dgW~ 99 (160)
|+|+|+||....|||+++|+|.|+|.+|++... .|.++....+ |++|+|.+.. ..+|+|..|+|+|++. ++||
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~-~l~~~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~ 77 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEI-ELLDPSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY 77 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEE-EEEEEEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceE-EEeeeeeccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence 999999999999999999999999999998444 4444332333 9999999976 5699999999999976 9999
Q ss_pred eeEEEEecC-CCCeEEEEeceecCCCCce
Q 037204 100 PESVKIYGA-NSRAVSFYYNTFIPSDIWY 127 (160)
Q Consensus 100 ~e~V~V~~~-~~~~~~F~~n~WL~~~~~y 127 (160)
|++|+|... +++.+.|+||+||..+..|
T Consensus 78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~ 106 (113)
T PF01477_consen 78 LDSVVVTDGETGRTYTFPCNRWLDPDKDY 106 (113)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEESTTEGC
T ss_pred EEEEEEEeCCCCcEEEEEcCCEECCCCCC
Confidence 999999974 7899999999999987644
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.56 E-value=3.5e-14 Score=107.27 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=78.7
Q ss_pred ceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEEEEcCC-----
Q 037204 22 CSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYLYRTGP----- 95 (160)
Q Consensus 22 C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L~~dg~----- 95 (160)
+.|.|+|.||....|||+++|+|+|+|..|++ ....|.++ .||+|++++|.+ +..++|++.+|++|||++
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s-~~~~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~ 76 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGET-EQLPIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN 76 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCc-ccEEEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence 57999999999999999999999999999998 66677544 489999999999 688899999999999988
Q ss_pred -----CCceeeEEEEecC-CCCeEEE
Q 037204 96 -----DGWKPESVKIYGA-NSRAVSF 115 (160)
Q Consensus 96 -----dgW~~e~V~V~~~-~~~~~~F 115 (160)
++|++++|+|.+. +.++..|
T Consensus 77 ~~~~~p~~~~~~I~Vq~get~~~~~F 102 (120)
T cd01755 77 SGETLPKLGARKIRVKSGETQKKFTF 102 (120)
T ss_pred cccCCCcEEEEEEEEEECCCCCEEEE
Confidence 3899999999966 5555555
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.33 E-value=1.5e-11 Score=95.61 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=66.4
Q ss_pred ceEEEEEEcCCCCCCC-CcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEE-EEcCC---
Q 037204 22 CSYTVVITTSCSSSKY-TRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYL-YRTGP--- 95 (160)
Q Consensus 22 C~Y~V~IkTg~~~~AG-Tda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L-~~dg~--- 95 (160)
+.|.|+|.|+....|| |+++|+|+|+|..|++ ....|.++ ..+|+|++++|.+ +..++|++.+|++ |||+.
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S-~~~~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~ 77 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGES-ENLPLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS 77 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcc-cCEEEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence 5899999999999998 9999999999999998 66677654 3569999999999 6888999999999 99988
Q ss_pred CCce
Q 037204 96 DGWK 99 (160)
Q Consensus 96 dgW~ 99 (160)
+.|+
T Consensus 78 ~sW~ 81 (137)
T cd01758 78 NSWW 81 (137)
T ss_pred hhhh
Confidence 6775
No 13
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.60 E-value=0.00091 Score=50.64 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=67.7
Q ss_pred eEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEEEEcCC------
Q 037204 23 SYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYLYRTGP------ 95 (160)
Q Consensus 23 ~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L~~dg~------ 95 (160)
+|.|+|.-+.... ++..+.|+|+|..|++ .-..+. .+.||.|++-+|.+ +...+|++-.|.++.++.
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s-~~~~i~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~ 75 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNT-RQYEIF---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITL 75 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCc-cceEEE---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCC
Confidence 6999998877654 8899999999999998 333342 34699999999999 677799999999999887
Q ss_pred CCceeeEEEEecC-CCCeEEE
Q 037204 96 DGWKPESVKIYGA-NSRAVSF 115 (160)
Q Consensus 96 dgW~~e~V~V~~~-~~~~~~F 115 (160)
+.=+.++|.|... +.+...|
T Consensus 76 p~~~~~~I~Vq~Ge~~~~~~F 96 (113)
T cd01759 76 PKVGAEKITVQSGKDGKVFNF 96 (113)
T ss_pred CeEEEEEEEEEeCCCccEEEE
Confidence 2233789999855 4444444
No 14
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=97.15 E-value=0.00055 Score=66.94 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCceEEEEEEcCCCCCCCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeeeecCCCCccEEEEEEEcCC---
Q 037204 19 LGSCSYTVVITTSCSSSKYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGP--- 95 (160)
Q Consensus 19 ~~~C~Y~V~IkTg~~~~AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v~g~clg~ic~l~L~~dg~--- 95 (160)
.-.-.|.|.|.|| ++.||.++|-|..-|.-+.. ...-| .|+.- -|...-.=||-+.-|+|=||++
T Consensus 971 ttk~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT-~~i~~-~~n~~--------~f~F~~kNLG~LtT~rIGHdnS~~~ 1038 (1295)
T KOG2080|consen 971 KTKMDYQVVIVTG--SGRGAIPAIWVTVEGSLCST-PPIML-KPNTP--------LFKFDHKNLGILSTLRIGHQQSEKP 1038 (1295)
T ss_pred ccccceEEEEEeC--CCCcccCceEEEEecccCCC-Cceee-CCCCc--------eeEEeccccceeeeEEecccCCCcc
Confidence 3455799999999 88999999999999999776 33333 12222 2333333389999999999999
Q ss_pred CCceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204 96 DGWKPESVKIYGA-NSRAVSFYYNTFIPSDI 125 (160)
Q Consensus 96 dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~ 125 (160)
.-|++|+|.|.+. ++.++.|||.+|+.+++
T Consensus 1039 ~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1039 VQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred hHHHHHHhhhhceeccceeccccccccCCcc
Confidence 7999999999976 89999999999999876
No 15
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=96.45 E-value=0.028 Score=51.43 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=71.8
Q ss_pred CCCceEEEEEEcCCCCC-CCCcceEEEEEEeCCCCeeecccCCCcCCCCccCCcceeeee-ecCCCCccEEEEEEEcCC-
Q 037204 19 LGSCSYTVVITTSCSSS-KYTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEI-RGPCAYQICYVYLYRTGP- 95 (160)
Q Consensus 19 ~~~C~Y~V~IkTg~~~~-AGTda~IsI~l~da~Gn~v~~~~Ld~~~~~~FErgs~DtF~v-~g~clg~ic~l~L~~dg~- 95 (160)
-....|.|+|..+.... .+++..+.|+|++..|++ .-..+. ...||.|++-+|.+ +...+|++-.|.+..++.
T Consensus 306 f~~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~~~~ 381 (442)
T TIGR03230 306 YKVFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEK-ENIPFT---LPEVSTNKTYSFLITTDVDIGELLMVKLKWEKDT 381 (442)
T ss_pred ceEEEEEEEEEEeccccccccCCcEEEEEEcCCCCc-cceEEe---eeeecCCCeEEEEEecccCCCceEEEEEEEeCCC
Confidence 33567999999887644 478999999999999997 222332 34699999999999 677799999999999988
Q ss_pred -CCce---------eeEEEEecC-CCCeEEE
Q 037204 96 -DGWK---------PESVKIYGA-NSRAVSF 115 (160)
Q Consensus 96 -dgW~---------~e~V~V~~~-~~~~~~F 115 (160)
..|. .++|+|... +.+...|
T Consensus 382 ~~~~~~~~~~~~~~~~~i~v~~ge~~~~~~f 412 (442)
T TIGR03230 382 YISWSDWWSSPGFHIRKLRIKSGETQSKVIF 412 (442)
T ss_pred cccchhhhcCCceeEEEEEEEeCCCccEEEE
Confidence 3776 688999855 4444554
No 16
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=76.96 E-value=27 Score=27.27 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred eeeee---cCCCCccEEEEEEEcCCCCceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204 74 TFEIR---GPCAYQICYVYLYRTGPDGWKPESVKIYGA-NSRAVSFYYNTFIPSDI 125 (160)
Q Consensus 74 tF~v~---g~clg~ic~l~L~~dg~dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~ 125 (160)
.|.+. .+-+|.|=.+.+.-.-..--|++.|++.+. ...+..|.||.|+....
T Consensus 71 ~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~ 126 (137)
T cd01751 71 AYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKK 126 (137)
T ss_pred EEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCC
Confidence 67762 444898888888766668999999999865 44899999999998543
No 17
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=56.20 E-value=4.9 Score=26.81 Aligned_cols=18 Identities=28% Similarity=0.927 Sum_probs=14.5
Q ss_pred cCceeehhhHHHHHhhhC
Q 037204 143 VPRWSVYVILGLLLCALL 160 (160)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~ 160 (160)
+|-|.-++|+|+++|..|
T Consensus 1 ~PwWvY~vi~gI~~S~ym 18 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSGYM 18 (52)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 477888889999998653
No 18
>PLN02264 lipoxygenase
Probab=42.24 E-value=1.3e+02 Score=30.53 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=41.8
Q ss_pred eeeee---cCCCCccEEEEEEEcCCCCceeeEEEEecCCCCeEEEEeceecCCCC
Q 037204 74 TFEIR---GPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDI 125 (160)
Q Consensus 74 tF~v~---g~clg~ic~l~L~~dg~dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~ 125 (160)
.|.+. ...+|.+=.+.+.-.-...-|++.|++.+..+.++.|.||.|+-...
T Consensus 159 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~ 213 (919)
T PLN02264 159 HYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQK 213 (919)
T ss_pred EEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCc
Confidence 67762 45588888888877666889999999987545899999999998644
No 19
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=36.58 E-value=25 Score=24.73 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=22.3
Q ss_pred EEeCCCCeeecccCCCcCCCCccC
Q 037204 46 FGDAYGNQIYAPRLDDPSTDAFES 69 (160)
Q Consensus 46 l~da~Gn~v~~~~Ld~~~~~~FEr 69 (160)
+-|..|+.+..+.+-+|-+..|||
T Consensus 32 ~kD~fG~~I~~PD~SNPTR~R~ER 55 (69)
T PF10295_consen 32 LKDIFGNPITDPDRSNPTRSRDER 55 (69)
T ss_pred ccccCCCccCCCCCCCCCcccccC
Confidence 389999999999999999999998
No 20
>PLN02337 lipoxygenase
Probab=32.04 E-value=2.2e+02 Score=28.78 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=41.7
Q ss_pred eeee---ecCCCCccEEEEEEEcCCCCceeeEEEEecC-CCCeEEEEeceecCCCC
Q 037204 74 TFEI---RGPCAYQICYVYLYRTGPDGWKPESVKIYGA-NSRAVSFYYNTFIPSDI 125 (160)
Q Consensus 74 tF~v---~g~clg~ic~l~L~~dg~dgW~~e~V~V~~~-~~~~~~F~~n~WL~~~~ 125 (160)
.|.+ ..+.+|.+=.+.+.-.-..--|++.|++.+. ...++.|.||.|+-...
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~ 151 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAK 151 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCC
Confidence 6776 2556898888888776668999999999864 44789999999998654
No 21
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=25.10 E-value=1.3e+02 Score=19.47 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=24.1
Q ss_pred CceEEEEEEcCCCCC--CCCcceEEEEEEeCCCC
Q 037204 21 SCSYTVVITTSCSSS--KYTRDQISIAFGDAYGN 52 (160)
Q Consensus 21 ~C~Y~V~IkTg~~~~--AGTda~IsI~l~da~Gn 52 (160)
.=.|.++|+-.+... ..+...|.|.+.|.+.+
T Consensus 44 ~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~ 77 (79)
T smart00112 44 QPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN 77 (79)
T ss_pred CCeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence 346777777766654 77888999999998865
No 22
>PLN02305 lipoxygenase
Probab=24.91 E-value=2.2e+02 Score=29.05 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=42.2
Q ss_pred eeeee---cCCCCccEEEEEEEcCCCCceeeEEEEecCCCCeEEEEeceecCCCCce
Q 037204 74 TFEIR---GPCAYQICYVYLYRTGPDGWKPESVKIYGANSRAVSFYYNTFIPSDIWY 127 (160)
Q Consensus 74 tF~v~---g~clg~ic~l~L~~dg~dgW~~e~V~V~~~~~~~~~F~~n~WL~~~~~y 127 (160)
.|.+. ..-+|.+=.+.+.-.-..--|++.|++.+..+.++.|.||.|+-...-|
T Consensus 155 ~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~ 211 (918)
T PLN02305 155 EYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDN 211 (918)
T ss_pred EEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCC
Confidence 67762 4447888888887766689999999998754589999999999865433
No 23
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=24.43 E-value=79 Score=23.29 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=24.7
Q ss_pred cCCCceEEEEEEcCCCCC----CCCcceEEEEEEeCCCCe
Q 037204 18 NLGSCSYTVVITTSCSSS----KYTRDQISIAFGDAYGNQ 53 (160)
Q Consensus 18 ~~~~C~Y~V~IkTg~~~~----AGTda~IsI~l~da~Gn~ 53 (160)
...+|.|+|.|=.|-.-. +.++++-.|.+.|..|+.
T Consensus 40 ~n~~C~y~i~iP~G~~a~v~~~~~~~~~d~i~v~D~~g~~ 79 (120)
T PF02408_consen 40 ANQNCTYQINIPKGYYAKVTLSANLNDNDSITVTDSNGKS 79 (120)
T ss_pred CCCceEEEEEcCCceEEEEEEEEecCCCCEEEEEecCCCE
Confidence 567999999998776533 333335566777777776
No 24
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=21.53 E-value=62 Score=28.70 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=20.8
Q ss_pred CCcceeeeeecCCC---CccEEEEEEEc
Q 037204 69 SCSSDTFEIRGPCA---YQICYVYLYRT 93 (160)
Q Consensus 69 rgs~DtF~v~g~cl---g~ic~l~L~~d 93 (160)
+=|+++|.|.|+|+ +++-.|||++.
T Consensus 290 ~~SinsfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 290 SLSINSFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ceeeeeeeccCceEEeccccceEEEecc
Confidence 45899999999995 57888888874
Done!