BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037205
         (439 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSG 78
           +++  +I+LP+FY VDPS VR+QTG +  +F K   +F+   + +Q W+  L++   L G
Sbjct: 119 EEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKG 176

Query: 79  FHYRSIRPESELINEVVNHILKRLLEE 105
           +H      +  + ++V   I   + +E
Sbjct: 177 WHIGKNDKQGAIADKVSADIWSHISKE 203


>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 19  QKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSG 78
           +K+ +  V+P+FY V+P++VR QTG   + F K   R  ++ EK+  WR+ L     LSG
Sbjct: 91  EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSG 148

Query: 79  FHYRSIRPESELINEVVNHI 98
               S   +S+L++++ N I
Sbjct: 149 --DCSGDDDSKLVDKIANEI 166


>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With
          The Ligand Metribolone (R1881)
          Length = 263

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 11 KLVLFHLTQKEHAQIVLPVFYRVDPSYV-----RNQTGSFGDSFSKLQERFEQNLEKLQT 65
          KL + H+   E   I L V   ++P  V      NQ  SF    S L E  E+ L  +  
Sbjct: 2  KLTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVK 61

Query: 66 WRKGL 70
          W K L
Sbjct: 62 WAKAL 66


>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
          Binding Domain In Complex With Testosterone
 pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
          Binding Domain In Complex With Dihydrotestosterone
 pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
          Binding Domain In Complex With Tetrahydrogestrinone
 pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
          Ligand-Binding Domain In Complex With Em-5744
 pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
          Inhibitor 1
          Length = 266

 Score = 28.1 bits (61), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 11 KLVLFHLTQKEHAQIVLPVFYRVDPSYV-----RNQTGSFGDSFSKLQERFEQNLEKLQT 65
          KL + H+   E   I L V   ++P  V      NQ  SF    S L E  E+ L  +  
Sbjct: 5  KLTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVK 64

Query: 66 WRKGL 70
          W K L
Sbjct: 65 WAKAL 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,846,082
Number of Sequences: 62578
Number of extensions: 455586
Number of successful extensions: 1183
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 30
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)