Query 037205
Match_columns 439
No_of_seqs 352 out of 2907
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.6E-81 1.4E-85 698.6 42.5 428 4-437 79-550 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-44 2.3E-49 389.2 20.6 273 117-391 161-497 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-37 3.8E-42 299.2 12.3 249 119-368 1-283 (287)
4 PLN03194 putative disease resi 99.8 8.6E-20 1.9E-24 158.6 7.4 84 4-104 94-179 (187)
5 PRK04841 transcriptional regul 99.6 7.2E-14 1.6E-18 155.4 22.8 268 111-392 11-335 (903)
6 PRK00411 cdc6 cell division co 99.3 4E-10 8.7E-15 113.6 21.9 231 107-345 23-308 (394)
7 TIGR00635 ruvB Holliday juncti 99.3 6E-11 1.3E-15 115.4 15.3 238 114-374 4-293 (305)
8 PF01637 Arch_ATPase: Archaeal 99.3 4.2E-11 9.1E-16 111.2 13.5 173 116-292 1-233 (234)
9 COG2909 MalT ATP-dependent tra 99.2 2.1E-10 4.6E-15 119.7 17.1 266 111-393 16-342 (894)
10 PRK00080 ruvB Holliday junctio 99.2 9.9E-11 2.1E-15 115.0 12.9 245 112-373 23-313 (328)
11 TIGR02928 orc1/cdc6 family rep 99.2 2.4E-09 5.2E-14 106.8 22.3 255 109-370 10-350 (365)
12 TIGR03015 pepcterm_ATPase puta 99.1 4.7E-09 1E-13 100.1 19.0 160 137-297 43-242 (269)
13 COG2256 MGS1 ATPase related to 99.1 1.3E-09 2.9E-14 105.2 11.8 177 100-288 16-207 (436)
14 COG3899 Predicted ATPase [Gene 99.0 8.8E-09 1.9E-13 112.4 15.8 292 115-417 1-407 (849)
15 PF05729 NACHT: NACHT domain 99.0 4.2E-09 9E-14 92.4 10.3 123 138-262 1-163 (166)
16 PRK06893 DNA replication initi 98.9 2.8E-08 6.2E-13 92.4 13.0 148 136-296 38-206 (229)
17 PRK13342 recombination factor 98.8 4.1E-08 8.8E-13 99.5 14.1 168 114-293 12-196 (413)
18 TIGR03420 DnaA_homol_Hda DnaA 98.8 8.4E-08 1.8E-12 89.0 13.4 168 114-296 15-204 (226)
19 COG3903 Predicted ATPase [Gene 98.8 6.3E-09 1.4E-13 101.2 4.4 253 136-392 13-317 (414)
20 PRK07003 DNA polymerase III su 98.7 4E-07 8.7E-12 95.8 16.5 178 114-294 16-222 (830)
21 PF05496 RuvB_N: Holliday junc 98.7 1.6E-07 3.4E-12 85.2 11.5 174 113-298 23-226 (233)
22 TIGR01242 26Sp45 26S proteasom 98.7 5E-08 1.1E-12 97.3 9.1 173 111-288 119-329 (364)
23 PRK04195 replication factor C 98.7 4.2E-07 9E-12 94.0 15.3 168 113-291 13-200 (482)
24 KOG2028 ATPase related to the 98.6 1.7E-07 3.6E-12 89.5 10.2 130 112-260 142-292 (554)
25 PF13173 AAA_14: AAA domain 98.6 6.2E-08 1.3E-12 81.7 6.7 113 138-254 3-127 (128)
26 PTZ00112 origin recognition co 98.6 7.4E-07 1.6E-11 94.5 15.7 225 109-343 750-1030(1164)
27 PRK14961 DNA polymerase III su 98.6 1.2E-06 2.7E-11 87.1 16.5 175 113-290 15-217 (363)
28 PLN03025 replication factor C 98.6 2.6E-07 5.6E-12 90.5 11.3 167 114-290 13-197 (319)
29 PRK14960 DNA polymerase III su 98.6 2.2E-06 4.7E-11 89.4 18.2 175 113-290 14-216 (702)
30 PRK14963 DNA polymerase III su 98.6 1.5E-06 3.2E-11 89.7 16.5 174 114-290 14-214 (504)
31 PRK12402 replication factor C 98.6 9.6E-07 2.1E-11 87.0 14.6 174 114-291 15-224 (337)
32 PRK00440 rfc replication facto 98.6 2.6E-06 5.7E-11 83.2 17.1 170 114-290 17-200 (319)
33 PRK08903 DnaA regulatory inact 98.6 7.9E-07 1.7E-11 82.6 12.2 166 114-297 18-203 (227)
34 PRK09087 hypothetical protein; 98.5 1.7E-06 3.7E-11 80.2 13.7 138 137-293 44-195 (226)
35 PRK08691 DNA polymerase III su 98.5 1.5E-06 3.3E-11 91.2 14.7 176 113-291 15-218 (709)
36 PRK13341 recombination factor 98.5 5.7E-07 1.2E-11 96.3 11.4 166 114-288 28-212 (725)
37 PRK14962 DNA polymerase III su 98.5 2.7E-06 5.9E-11 87.1 15.8 179 114-296 14-222 (472)
38 PRK03992 proteasome-activating 98.5 6E-07 1.3E-11 90.1 10.8 172 111-287 128-337 (389)
39 PRK14956 DNA polymerase III su 98.5 2.4E-06 5.3E-11 86.5 13.5 174 113-289 17-218 (484)
40 TIGR02397 dnaX_nterm DNA polym 98.5 7.3E-06 1.6E-10 81.4 16.9 179 113-294 13-219 (355)
41 PF00308 Bac_DnaA: Bacterial d 98.4 2.4E-06 5.2E-11 78.8 12.1 150 136-293 33-208 (219)
42 PRK14951 DNA polymerase III su 98.4 2.8E-05 6E-10 81.8 20.7 176 113-291 15-223 (618)
43 PRK05642 DNA replication initi 98.4 8E-06 1.7E-10 76.2 15.0 146 137-295 45-210 (234)
44 PRK08727 hypothetical protein; 98.4 7.8E-06 1.7E-10 76.3 14.9 163 113-290 18-201 (233)
45 PRK12323 DNA polymerase III su 98.4 4E-06 8.7E-11 87.2 13.8 175 113-290 15-222 (700)
46 PRK14949 DNA polymerase III su 98.4 4E-06 8.7E-11 90.0 13.8 177 114-293 16-221 (944)
47 cd00009 AAA The AAA+ (ATPases 98.4 8.4E-07 1.8E-11 75.4 7.2 115 117-233 1-131 (151)
48 PRK06645 DNA polymerase III su 98.4 7E-06 1.5E-10 84.5 14.5 175 113-290 20-226 (507)
49 PRK14087 dnaA chromosomal repl 98.4 4.9E-06 1.1E-10 85.0 13.0 179 114-296 116-322 (450)
50 PRK08084 DNA replication initi 98.4 1.3E-05 2.9E-10 74.8 15.0 165 115-294 24-210 (235)
51 PRK07471 DNA polymerase III su 98.3 3.8E-05 8.2E-10 76.3 18.7 175 111-293 16-238 (365)
52 PRK05896 DNA polymerase III su 98.3 6.7E-06 1.5E-10 85.5 13.6 180 113-295 15-223 (605)
53 PTZ00202 tuzin; Provisional 98.3 2.9E-05 6.2E-10 77.1 17.1 195 65-260 195-432 (550)
54 TIGR02881 spore_V_K stage V sp 98.3 6.1E-06 1.3E-10 78.4 12.3 145 115-264 7-193 (261)
55 PRK05564 DNA polymerase III su 98.3 2E-05 4.3E-10 77.0 16.2 170 114-292 4-189 (313)
56 PRK07994 DNA polymerase III su 98.3 8.2E-06 1.8E-10 86.0 14.2 175 113-290 15-217 (647)
57 COG1474 CDC6 Cdc6-related prot 98.3 2.7E-05 5.9E-10 77.2 17.0 181 110-293 13-238 (366)
58 PRK07940 DNA polymerase III su 98.3 1.3E-05 2.8E-10 80.3 14.6 170 114-293 5-213 (394)
59 PRK14964 DNA polymerase III su 98.3 1.5E-05 3.3E-10 81.5 15.1 174 113-289 12-213 (491)
60 PRK14955 DNA polymerase III su 98.3 1.5E-05 3.3E-10 80.3 15.0 175 113-290 15-225 (397)
61 PRK14957 DNA polymerase III su 98.3 9.6E-06 2.1E-10 84.1 13.3 178 113-293 15-221 (546)
62 PRK06620 hypothetical protein; 98.3 7.4E-06 1.6E-10 75.3 11.2 132 138-290 45-186 (214)
63 PF01582 TIR: TIR domain; Int 98.3 2.6E-07 5.6E-12 79.2 1.3 68 4-71 68-140 (141)
64 PRK14958 DNA polymerase III su 98.3 2.9E-05 6.2E-10 80.4 16.6 175 113-290 15-217 (509)
65 PRK07764 DNA polymerase III su 98.3 1.7E-05 3.6E-10 86.3 15.4 173 114-289 15-217 (824)
66 TIGR02639 ClpA ATP-dependent C 98.2 7.8E-06 1.7E-10 88.8 12.2 141 114-262 182-358 (731)
67 PTZ00454 26S protease regulato 98.2 7E-06 1.5E-10 82.3 10.6 175 111-289 142-353 (398)
68 PRK14088 dnaA chromosomal repl 98.2 2.4E-05 5.2E-10 79.8 14.6 152 137-291 130-303 (440)
69 TIGR02903 spore_lon_C ATP-depe 98.2 1.8E-05 3.9E-10 84.0 13.9 47 113-161 153-199 (615)
70 PRK14959 DNA polymerase III su 98.2 2.2E-05 4.7E-10 82.2 14.2 181 114-297 16-225 (624)
71 PRK14950 DNA polymerase III su 98.2 5.8E-05 1.3E-09 79.9 17.2 176 114-292 16-220 (585)
72 COG1222 RPT1 ATP-dependent 26S 98.2 2.5E-05 5.5E-10 74.9 12.9 170 114-289 151-359 (406)
73 PRK09112 DNA polymerase III su 98.2 3.9E-05 8.5E-10 75.7 14.8 179 111-294 20-241 (351)
74 PRK14954 DNA polymerase III su 98.2 4.1E-05 8.9E-10 80.7 15.3 177 113-292 15-228 (620)
75 PRK14952 DNA polymerase III su 98.2 0.00013 2.7E-09 76.6 18.7 180 113-295 12-222 (584)
76 PRK09111 DNA polymerase III su 98.2 0.00013 2.8E-09 76.8 18.8 176 113-291 23-231 (598)
77 PHA02544 44 clamp loader, smal 98.2 2E-05 4.3E-10 77.0 11.8 141 112-260 19-171 (316)
78 TIGR01241 FtsH_fam ATP-depende 98.1 2E-05 4.3E-10 81.9 12.2 178 112-293 53-267 (495)
79 PRK00149 dnaA chromosomal repl 98.1 6.6E-05 1.4E-09 77.1 15.5 169 136-312 147-349 (450)
80 PF13191 AAA_16: AAA ATPase do 98.1 2.7E-06 5.9E-11 75.9 4.8 49 115-163 1-50 (185)
81 PRK06305 DNA polymerase III su 98.1 5.5E-05 1.2E-09 77.3 14.8 178 113-293 16-223 (451)
82 TIGR00362 DnaA chromosomal rep 98.1 7E-05 1.5E-09 75.9 15.4 147 137-291 136-308 (405)
83 PRK14969 DNA polymerase III su 98.1 2.6E-05 5.6E-10 81.2 12.5 177 114-293 16-221 (527)
84 CHL00176 ftsH cell division pr 98.1 2.4E-05 5.1E-10 83.0 12.3 170 113-286 182-387 (638)
85 TIGR03345 VI_ClpV1 type VI sec 98.1 2.5E-05 5.5E-10 85.7 12.8 160 90-260 169-361 (852)
86 PRK14970 DNA polymerase III su 98.1 6.5E-05 1.4E-09 75.1 14.7 173 114-289 17-205 (367)
87 COG2255 RuvB Holliday junction 98.1 7.7E-05 1.7E-09 69.6 13.6 246 113-375 25-316 (332)
88 PTZ00361 26 proteosome regulat 98.1 5.5E-06 1.2E-10 83.7 6.8 170 114-288 183-390 (438)
89 TIGR02880 cbbX_cfxQ probable R 98.1 5.5E-05 1.2E-09 72.7 13.2 119 139-262 60-208 (284)
90 CHL00095 clpC Clp protease ATP 98.1 1.8E-05 3.8E-10 87.1 11.0 142 114-260 179-352 (821)
91 PRK07133 DNA polymerase III su 98.1 9.8E-05 2.1E-09 78.5 16.0 178 114-294 18-221 (725)
92 TIGR00678 holB DNA polymerase 98.0 0.00012 2.5E-09 66.0 13.8 144 137-288 14-186 (188)
93 PRK06647 DNA polymerase III su 98.0 0.0007 1.5E-08 71.0 21.4 175 113-290 15-217 (563)
94 PF14516 AAA_35: AAA-like doma 98.0 0.001 2.2E-08 65.4 21.4 259 111-383 8-327 (331)
95 TIGR03346 chaperone_ClpB ATP-d 98.0 4.1E-05 9E-10 84.5 12.4 141 114-261 173-348 (852)
96 CHL00181 cbbX CbbX; Provisiona 98.0 0.0002 4.3E-09 68.9 15.5 122 138-264 60-211 (287)
97 PRK12422 chromosomal replicati 98.0 0.0001 2.2E-09 75.2 13.9 143 137-287 141-307 (445)
98 PRK14086 dnaA chromosomal repl 98.0 9E-05 1.9E-09 77.3 13.6 151 137-291 314-486 (617)
99 PRK14953 DNA polymerase III su 98.0 0.00027 5.8E-09 72.9 16.8 176 113-291 15-218 (486)
100 TIGR03689 pup_AAA proteasome A 98.0 1.8E-05 3.8E-10 81.3 8.1 148 113-262 181-378 (512)
101 PRK08451 DNA polymerase III su 98.0 0.00015 3.2E-09 75.0 14.4 176 113-291 13-216 (535)
102 PRK10865 protein disaggregatio 98.0 3E-05 6.5E-10 85.3 9.8 141 114-262 178-354 (857)
103 PF13401 AAA_22: AAA domain; P 98.0 5.1E-05 1.1E-09 63.7 9.1 93 137-231 4-125 (131)
104 KOG0989 Replication factor C, 97.9 0.00025 5.4E-09 66.9 14.1 169 112-287 34-224 (346)
105 PRK14948 DNA polymerase III su 97.9 0.0002 4.4E-09 75.9 15.1 176 114-292 16-221 (620)
106 PRK12377 putative replication 97.9 6.4E-05 1.4E-09 70.5 9.8 66 137-203 101-172 (248)
107 PRK05563 DNA polymerase III su 97.9 0.00041 8.8E-09 72.9 16.4 174 113-289 15-216 (559)
108 PRK14965 DNA polymerase III su 97.9 0.00039 8.5E-09 73.3 16.2 179 113-294 15-222 (576)
109 PRK11034 clpA ATP-dependent Cl 97.9 5.7E-05 1.2E-09 81.5 9.7 144 114-261 186-361 (758)
110 KOG2227 Pre-initiation complex 97.9 0.0005 1.1E-08 68.3 15.2 152 111-262 147-338 (529)
111 PRK14971 DNA polymerase III su 97.8 0.0011 2.3E-08 70.4 18.7 173 114-289 17-218 (614)
112 PF05673 DUF815: Protein of un 97.8 0.0005 1.1E-08 63.5 14.0 88 111-203 24-115 (249)
113 PF00004 AAA: ATPase family as 97.8 5.6E-05 1.2E-09 63.3 7.0 24 140-163 1-24 (132)
114 smart00255 TIR Toll - interleu 97.8 4.1E-05 8.8E-10 65.2 6.1 70 4-74 68-138 (140)
115 KOG0991 Replication factor C, 97.8 0.00032 6.9E-09 63.6 11.7 47 113-161 26-72 (333)
116 PRK06526 transposase; Provisio 97.8 4.4E-05 9.5E-10 72.0 6.5 93 137-232 98-201 (254)
117 PRK08116 hypothetical protein; 97.8 3.1E-05 6.6E-10 73.7 5.4 94 138-232 115-221 (268)
118 CHL00195 ycf46 Ycf46; Provisio 97.8 7E-05 1.5E-09 76.9 8.1 175 113-289 227-431 (489)
119 PRK07952 DNA replication prote 97.7 0.00033 7.1E-09 65.6 11.4 81 123-204 85-172 (244)
120 TIGR01243 CDC48 AAA family ATP 97.7 0.00015 3.2E-09 79.0 10.2 170 113-287 452-657 (733)
121 TIGR00602 rad24 checkpoint pro 97.7 0.0004 8.7E-09 73.4 13.0 52 112-163 82-136 (637)
122 TIGR01243 CDC48 AAA family ATP 97.7 0.00011 2.4E-09 80.0 8.6 172 112-287 176-381 (733)
123 PRK08181 transposase; Validate 97.7 5.4E-05 1.2E-09 71.8 5.3 93 138-232 107-209 (269)
124 TIGR02639 ClpA ATP-dependent C 97.7 0.0017 3.7E-08 70.8 17.5 104 113-216 453-577 (731)
125 PRK05707 DNA polymerase III su 97.7 0.0011 2.4E-08 65.0 14.4 151 137-293 22-203 (328)
126 COG0466 Lon ATP-dependent Lon 97.6 0.00015 3.3E-09 75.5 8.1 148 113-263 322-509 (782)
127 KOG2543 Origin recognition com 97.6 0.00045 9.7E-09 67.0 10.5 149 113-261 5-192 (438)
128 PRK09183 transposase/IS protei 97.6 7.3E-05 1.6E-09 70.8 4.5 93 138-232 103-206 (259)
129 PF01695 IstB_IS21: IstB-like 97.6 3.6E-05 7.7E-10 68.6 2.3 65 138-204 48-118 (178)
130 COG0593 DnaA ATPase involved i 97.6 0.00094 2E-08 66.5 12.2 123 136-265 112-260 (408)
131 PF10443 RNA12: RNA12 protein; 97.5 0.014 3.1E-07 58.1 20.0 105 194-302 148-288 (431)
132 KOG0730 AAA+-type ATPase [Post 97.5 0.0013 2.9E-08 67.9 12.1 169 114-287 434-637 (693)
133 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0028 6.1E-08 70.2 15.7 119 113-231 564-717 (852)
134 PLN00020 ribulose bisphosphate 97.5 0.00064 1.4E-08 66.4 9.2 148 135-288 146-333 (413)
135 COG1373 Predicted ATPase (AAA+ 97.4 0.00029 6.2E-09 71.0 6.9 112 139-258 39-163 (398)
136 PRK07399 DNA polymerase III su 97.4 0.0066 1.4E-07 59.1 15.7 173 114-293 4-221 (314)
137 PRK10865 protein disaggregatio 97.4 0.0019 4.1E-08 71.3 13.0 103 113-215 567-693 (857)
138 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00087 1.9E-08 68.6 9.3 150 112-262 188-374 (802)
139 KOG0731 AAA+-type ATPase conta 97.4 0.0015 3.2E-08 69.4 11.3 174 112-289 309-520 (774)
140 COG0542 clpA ATP-binding subun 97.3 0.0012 2.7E-08 70.4 10.3 117 114-230 491-642 (786)
141 PF13207 AAA_17: AAA domain; P 97.3 0.00019 4.2E-09 59.3 3.4 24 139-162 1-24 (121)
142 COG1223 Predicted ATPase (AAA+ 97.3 0.0018 3.9E-08 59.8 9.6 166 113-286 120-318 (368)
143 TIGR00763 lon ATP-dependent pr 97.3 0.0014 3.1E-08 71.8 10.5 148 114-262 320-505 (775)
144 PRK10787 DNA-binding ATP-depen 97.2 0.0053 1.2E-07 67.0 14.5 149 114-263 322-507 (784)
145 COG0542 clpA ATP-binding subun 97.2 0.0028 6E-08 67.8 11.9 144 114-260 170-344 (786)
146 PRK08769 DNA polymerase III su 97.2 0.011 2.5E-07 57.5 15.2 163 123-294 13-209 (319)
147 PRK10733 hflB ATP-dependent me 97.2 0.0011 2.5E-08 70.9 9.1 150 114-264 152-337 (644)
148 KOG0727 26S proteasome regulat 97.2 0.0054 1.2E-07 56.4 11.8 148 114-262 155-339 (408)
149 COG2812 DnaX DNA polymerase II 97.2 0.0027 5.8E-08 65.2 11.1 171 114-287 16-214 (515)
150 KOG0744 AAA+-type ATPase [Post 97.2 0.001 2.2E-08 63.2 7.4 69 137-205 177-261 (423)
151 COG1484 DnaC DNA replication p 97.2 0.0004 8.7E-09 65.5 4.6 68 136-204 104-177 (254)
152 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0017 3.7E-08 71.6 9.9 118 113-230 565-717 (852)
153 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00044 9.6E-09 67.7 4.6 50 114-163 51-104 (361)
154 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0037 8E-08 64.2 10.7 125 137-263 545-693 (802)
155 PRK10536 hypothetical protein; 97.1 0.003 6.5E-08 59.1 9.4 45 112-160 53-97 (262)
156 PRK11034 clpA ATP-dependent Cl 97.1 0.0012 2.5E-08 71.6 7.6 101 114-214 458-579 (758)
157 PRK06835 DNA replication prote 97.1 0.00055 1.2E-08 67.0 4.7 92 138-231 184-288 (329)
158 PRK09376 rho transcription ter 97.1 0.00055 1.2E-08 67.6 4.3 27 137-163 169-195 (416)
159 COG3267 ExeA Type II secretory 97.1 0.018 3.9E-07 53.3 13.8 162 134-295 48-247 (269)
160 CHL00095 clpC Clp protease ATP 97.0 0.0021 4.5E-08 71.0 9.0 118 114-231 509-661 (821)
161 TIGR02640 gas_vesic_GvpN gas v 97.0 0.0065 1.4E-07 57.7 11.3 24 139-162 23-46 (262)
162 PRK08939 primosomal protein Dn 97.0 0.00075 1.6E-08 65.4 4.8 111 118-230 135-259 (306)
163 PRK06090 DNA polymerase III su 97.0 0.032 6.9E-07 54.4 16.0 158 124-293 13-201 (319)
164 PRK08058 DNA polymerase III su 97.0 0.012 2.7E-07 57.7 13.3 145 115-260 6-180 (329)
165 PRK06696 uridine kinase; Valid 97.0 0.00083 1.8E-08 62.2 4.7 44 119-162 3-47 (223)
166 cd01128 rho_factor Transcripti 97.0 0.00061 1.3E-08 64.0 3.5 27 137-163 16-42 (249)
167 KOG0741 AAA+-type ATPase [Post 96.9 0.0044 9.6E-08 62.6 9.4 121 133-261 534-685 (744)
168 PRK06871 DNA polymerase III su 96.9 0.034 7.3E-07 54.3 15.4 158 124-290 12-200 (325)
169 PRK08118 topology modulation p 96.9 0.0007 1.5E-08 59.7 3.3 25 139-163 3-27 (167)
170 PRK07667 uridine kinase; Provi 96.9 0.0013 2.9E-08 59.4 5.2 40 123-162 3-42 (193)
171 KOG2004 Mitochondrial ATP-depe 96.9 0.0035 7.7E-08 65.4 8.6 149 114-263 411-597 (906)
172 COG1618 Predicted nucleotide k 96.9 0.00084 1.8E-08 57.6 3.4 26 138-163 6-31 (179)
173 KOG2035 Replication factor C, 96.9 0.022 4.8E-07 53.3 12.8 185 115-312 14-258 (351)
174 PF14532 Sigma54_activ_2: Sigm 96.9 0.00037 8.1E-09 59.3 1.1 101 117-232 1-110 (138)
175 TIGR01817 nifA Nif-specific re 96.9 0.008 1.7E-07 63.2 11.3 52 111-162 193-244 (534)
176 KOG0734 AAA+-type ATPase conta 96.9 0.0026 5.7E-08 64.2 6.9 140 114-262 304-484 (752)
177 PRK06964 DNA polymerase III su 96.9 0.025 5.4E-07 55.6 13.8 90 194-293 132-225 (342)
178 KOG0652 26S proteasome regulat 96.8 0.025 5.5E-07 52.4 12.6 179 114-297 171-391 (424)
179 COG0464 SpoVK ATPases of the A 96.8 0.0037 7.9E-08 65.1 8.3 170 114-285 242-445 (494)
180 TIGR02974 phageshock_pspF psp 96.8 0.0096 2.1E-07 58.5 10.7 47 116-162 1-47 (329)
181 PF13671 AAA_33: AAA domain; P 96.8 0.0014 3.1E-08 55.7 4.2 24 139-162 1-24 (143)
182 PRK07993 DNA polymerase III su 96.8 0.042 9.1E-07 54.0 14.9 160 123-290 11-201 (334)
183 KOG1970 Checkpoint RAD17-RFC c 96.8 0.017 3.7E-07 58.8 12.0 43 121-163 89-136 (634)
184 PRK06921 hypothetical protein; 96.8 0.001 2.3E-08 63.2 3.4 26 137-162 117-142 (266)
185 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.3E-08 55.1 3.2 22 140-161 1-22 (129)
186 PRK11608 pspF phage shock prot 96.8 0.017 3.6E-07 56.8 11.8 48 114-161 6-53 (326)
187 COG2607 Predicted ATPase (AAA+ 96.7 0.0039 8.5E-08 57.0 6.6 117 111-232 57-183 (287)
188 PF05621 TniB: Bacterial TniB 96.7 0.026 5.6E-07 54.0 12.3 179 114-292 34-260 (302)
189 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.014 2.9E-07 52.0 9.9 24 139-162 1-24 (183)
190 PRK07261 topology modulation p 96.7 0.0013 2.8E-08 58.3 3.1 23 139-161 2-24 (171)
191 PF10236 DAP3: Mitochondrial r 96.7 0.04 8.6E-07 53.6 13.7 48 243-290 258-306 (309)
192 KOG0728 26S proteasome regulat 96.6 0.02 4.4E-07 52.7 10.4 143 115-262 147-331 (404)
193 PRK15455 PrkA family serine pr 96.6 0.0021 4.5E-08 66.4 4.6 50 114-163 76-129 (644)
194 KOG1514 Origin recognition com 96.6 0.044 9.5E-07 57.5 13.9 184 112-296 394-624 (767)
195 KOG0735 AAA+-type ATPase [Post 96.6 0.011 2.3E-07 61.9 9.4 149 136-293 430-616 (952)
196 PTZ00494 tuzin-like protein; P 96.6 0.2 4.4E-06 50.3 17.7 197 64-261 303-543 (664)
197 COG0470 HolB ATPase involved i 96.6 0.0071 1.5E-07 59.0 8.0 138 115-252 2-171 (325)
198 cd03238 ABC_UvrA The excision 96.6 0.0096 2.1E-07 52.9 7.9 108 137-246 21-161 (176)
199 PF00485 PRK: Phosphoribulokin 96.5 0.002 4.3E-08 58.2 3.4 24 139-162 1-24 (194)
200 cd01131 PilT Pilus retraction 96.5 0.0058 1.2E-07 55.5 6.3 96 138-236 2-113 (198)
201 TIGR00767 rho transcription te 96.5 0.0027 5.8E-08 63.1 4.4 26 137-162 168-193 (415)
202 PRK04132 replication factor C 96.5 0.028 6.1E-07 61.4 12.5 138 145-290 574-728 (846)
203 PRK15429 formate hydrogenlyase 96.5 0.033 7.2E-07 60.4 13.2 49 114-162 376-424 (686)
204 COG0465 HflB ATP-dependent Zn 96.5 0.014 3.1E-07 60.8 9.5 173 111-289 147-357 (596)
205 PRK06762 hypothetical protein; 96.5 0.0026 5.5E-08 55.9 3.6 24 138-161 3-26 (166)
206 PF13177 DNA_pol3_delta2: DNA 96.5 0.015 3.3E-07 50.9 8.4 132 118-250 1-162 (162)
207 PRK08233 hypothetical protein; 96.5 0.0024 5.2E-08 56.7 3.4 25 137-161 3-27 (182)
208 PRK05480 uridine/cytidine kina 96.4 0.0029 6.4E-08 57.8 3.9 27 135-161 4-30 (209)
209 CHL00206 ycf2 Ycf2; Provisiona 96.4 0.01 2.2E-07 68.6 8.7 28 136-163 1629-1656(2281)
210 KOG2228 Origin recognition com 96.4 0.013 2.9E-07 56.2 8.0 149 114-262 24-219 (408)
211 PRK03839 putative kinase; Prov 96.4 0.0029 6.3E-08 56.3 3.4 25 139-163 2-26 (180)
212 cd02019 NK Nucleoside/nucleoti 96.3 0.0032 6.9E-08 46.6 2.9 22 139-160 1-22 (69)
213 KOG0736 Peroxisome assembly fa 96.3 0.033 7.2E-07 58.9 11.2 90 114-205 672-775 (953)
214 TIGR00064 ftsY signal recognit 96.3 0.012 2.5E-07 56.2 7.4 28 135-162 70-97 (272)
215 KOG0739 AAA+-type ATPase [Post 96.3 0.18 3.9E-06 47.9 14.8 169 113-286 132-334 (439)
216 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0034 7.4E-08 56.1 3.5 27 136-162 2-28 (188)
217 PF00406 ADK: Adenylate kinase 96.3 0.016 3.6E-07 49.9 7.7 73 142-214 1-94 (151)
218 smart00382 AAA ATPases associa 96.3 0.0028 6.2E-08 52.7 2.8 26 138-163 3-28 (148)
219 KOG0743 AAA+-type ATPase [Post 96.3 0.038 8.2E-07 55.2 10.9 150 137-300 235-417 (457)
220 COG4088 Predicted nucleotide k 96.3 0.011 2.3E-07 53.0 6.2 26 138-163 2-27 (261)
221 PRK00771 signal recognition pa 96.3 0.018 4E-07 58.5 8.8 28 136-163 94-121 (437)
222 TIGR00235 udk uridine kinase. 96.3 0.0047 1E-07 56.4 4.2 28 135-162 4-31 (207)
223 PRK10416 signal recognition pa 96.3 0.0088 1.9E-07 58.3 6.3 27 136-162 113-139 (318)
224 PRK11388 DNA-binding transcrip 96.2 0.038 8.1E-07 59.5 11.6 49 113-161 324-372 (638)
225 PRK05022 anaerobic nitric oxid 96.2 0.057 1.2E-06 56.4 12.6 51 112-162 185-235 (509)
226 KOG0726 26S proteasome regulat 96.2 0.031 6.7E-07 52.7 9.3 89 114-204 185-288 (440)
227 PTZ00301 uridine kinase; Provi 96.2 0.0043 9.3E-08 56.8 3.7 25 137-161 3-27 (210)
228 PRK09270 nucleoside triphospha 96.2 0.0063 1.4E-07 56.5 4.9 29 134-162 30-58 (229)
229 PRK08699 DNA polymerase III su 96.2 0.032 7E-07 54.6 10.0 142 137-289 21-202 (325)
230 PRK11331 5-methylcytosine-spec 96.2 0.0045 9.8E-08 62.4 3.9 45 114-162 175-219 (459)
231 PRK00625 shikimate kinase; Pro 96.2 0.004 8.6E-08 55.2 3.2 25 139-163 2-26 (173)
232 cd03214 ABC_Iron-Siderophores_ 96.2 0.016 3.4E-07 51.6 7.1 109 137-246 25-171 (180)
233 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.009 2E-07 51.9 5.2 26 138-163 3-28 (159)
234 PRK04040 adenylate kinase; Pro 96.2 0.0045 9.7E-08 55.7 3.5 25 138-162 3-27 (188)
235 PRK00131 aroK shikimate kinase 96.1 0.0047 1E-07 54.4 3.5 27 137-163 4-30 (175)
236 PRK06547 hypothetical protein; 96.1 0.0077 1.7E-07 53.3 4.8 28 135-162 13-40 (172)
237 TIGR01069 mutS2 MutS2 family p 96.1 0.0083 1.8E-07 65.4 6.0 167 136-312 321-520 (771)
238 PHA00729 NTP-binding motif con 96.1 0.0077 1.7E-07 55.3 4.9 27 136-162 16-42 (226)
239 PF00910 RNA_helicase: RNA hel 96.1 0.0044 9.6E-08 50.2 3.0 22 140-161 1-22 (107)
240 PF07728 AAA_5: AAA domain (dy 96.1 0.0047 1E-07 52.4 3.2 24 140-163 2-25 (139)
241 COG0703 AroK Shikimate kinase 96.1 0.01 2.2E-07 52.0 5.2 28 138-165 3-31 (172)
242 TIGR01425 SRP54_euk signal rec 96.1 0.029 6.2E-07 56.7 8.9 27 136-162 99-125 (429)
243 COG1875 NYN ribonuclease and A 96.0 0.027 5.9E-07 54.7 8.1 24 134-157 242-265 (436)
244 COG0572 Udk Uridine kinase [Nu 96.0 0.0064 1.4E-07 55.3 3.7 28 135-162 6-33 (218)
245 cd03228 ABCC_MRP_Like The MRP 96.0 0.032 6.9E-07 49.2 8.1 105 137-246 28-167 (171)
246 KOG0729 26S proteasome regulat 96.0 0.0096 2.1E-07 55.2 4.8 87 116-204 179-280 (435)
247 cd03223 ABCD_peroxisomal_ALDP 96.0 0.028 6.1E-07 49.4 7.6 106 137-246 27-160 (166)
248 PRK11889 flhF flagellar biosyn 96.0 0.03 6.5E-07 55.7 8.5 27 136-162 240-266 (436)
249 PRK13531 regulatory ATPase Rav 96.0 0.0063 1.4E-07 62.0 3.8 45 114-162 20-64 (498)
250 PF03969 AFG1_ATPase: AFG1-lik 96.0 0.013 2.8E-07 58.2 5.9 94 136-232 61-167 (362)
251 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.018 3.9E-07 49.3 6.1 103 137-246 26-140 (144)
252 KOG0735 AAA+-type ATPase [Post 95.9 0.049 1.1E-06 57.2 10.1 147 138-289 702-872 (952)
253 cd03247 ABCC_cytochrome_bd The 95.9 0.017 3.7E-07 51.3 6.1 105 137-246 28-169 (178)
254 PF01583 APS_kinase: Adenylyls 95.9 0.0097 2.1E-07 51.5 4.3 26 138-163 3-28 (156)
255 COG2884 FtsE Predicted ATPase 95.9 0.036 7.8E-07 49.2 7.7 52 186-239 147-204 (223)
256 PF02562 PhoH: PhoH-like prote 95.9 0.0062 1.3E-07 55.2 3.1 35 195-232 120-156 (205)
257 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.028 6.1E-07 52.5 7.3 52 185-238 148-205 (254)
258 PRK05541 adenylylsulfate kinas 95.9 0.0081 1.8E-07 53.3 3.7 27 136-162 6-32 (176)
259 cd00227 CPT Chloramphenicol (C 95.9 0.0073 1.6E-07 53.6 3.3 25 138-162 3-27 (175)
260 PF03266 NTPase_1: NTPase; In 95.8 0.0083 1.8E-07 52.9 3.5 24 140-163 2-25 (168)
261 PRK13947 shikimate kinase; Pro 95.8 0.0072 1.6E-07 53.2 3.1 25 139-163 3-27 (171)
262 PRK06217 hypothetical protein; 95.8 0.0068 1.5E-07 54.2 3.0 24 139-162 3-26 (183)
263 PF07726 AAA_3: ATPase family 95.8 0.006 1.3E-07 50.7 2.3 24 140-163 2-25 (131)
264 cd02023 UMPK Uridine monophosp 95.8 0.0066 1.4E-07 55.0 2.9 22 139-160 1-22 (198)
265 cd02021 GntK Gluconate kinase 95.8 0.0067 1.4E-07 52.2 2.7 24 139-162 1-24 (150)
266 cd02020 CMPK Cytidine monophos 95.8 0.0072 1.6E-07 51.5 2.9 24 139-162 1-24 (147)
267 KOG3928 Mitochondrial ribosome 95.8 0.15 3.2E-06 50.4 12.0 54 241-297 403-460 (461)
268 cd03216 ABC_Carb_Monos_I This 95.8 0.014 3.1E-07 51.1 4.8 109 137-246 26-155 (163)
269 TIGR02322 phosphon_PhnN phosph 95.8 0.0082 1.8E-07 53.3 3.2 24 138-161 2-25 (179)
270 TIGR02858 spore_III_AA stage I 95.7 0.021 4.6E-07 54.3 6.1 98 136-236 110-233 (270)
271 PF03308 ArgK: ArgK protein; 95.7 0.017 3.7E-07 53.8 5.3 40 123-162 15-54 (266)
272 TIGR00150 HI0065_YjeE ATPase, 95.7 0.013 2.7E-07 49.4 4.0 27 136-162 21-47 (133)
273 cd02025 PanK Pantothenate kina 95.7 0.0072 1.6E-07 55.8 2.8 23 139-161 1-23 (220)
274 COG1936 Predicted nucleotide k 95.7 0.0074 1.6E-07 52.5 2.6 20 139-158 2-21 (180)
275 cd02024 NRK1 Nicotinamide ribo 95.7 0.0072 1.6E-07 54.2 2.6 23 139-161 1-23 (187)
276 PRK14974 cell division protein 95.7 0.051 1.1E-06 53.3 8.8 28 136-163 139-166 (336)
277 PF00158 Sigma54_activat: Sigm 95.7 0.01 2.2E-07 52.3 3.5 88 116-206 1-105 (168)
278 PRK00889 adenylylsulfate kinas 95.7 0.012 2.7E-07 52.0 4.0 26 137-162 4-29 (175)
279 cd02028 UMPK_like Uridine mono 95.6 0.0094 2E-07 53.1 3.1 24 139-162 1-24 (179)
280 PRK14530 adenylate kinase; Pro 95.6 0.0097 2.1E-07 54.7 3.3 25 139-163 5-29 (215)
281 PRK12608 transcription termina 95.6 0.02 4.4E-07 56.5 5.7 36 126-162 123-158 (380)
282 cd00464 SK Shikimate kinase (S 95.6 0.01 2.2E-07 51.1 3.2 24 140-163 2-25 (154)
283 PF04665 Pox_A32: Poxvirus A32 95.6 0.0088 1.9E-07 55.6 2.9 26 138-163 14-39 (241)
284 PRK13949 shikimate kinase; Pro 95.6 0.01 2.2E-07 52.4 3.2 25 139-163 3-27 (169)
285 PRK00409 recombination and DNA 95.6 0.014 3E-07 63.9 4.8 167 136-312 326-525 (782)
286 COG1102 Cmk Cytidylate kinase 95.6 0.01 2.2E-07 51.1 3.0 25 139-163 2-26 (179)
287 cd01121 Sms Sms (bacterial rad 95.6 0.035 7.6E-07 55.3 7.2 41 123-163 68-108 (372)
288 PRK04296 thymidine kinase; Pro 95.6 0.014 3.1E-07 52.5 4.1 93 138-232 3-116 (190)
289 cd00544 CobU Adenosylcobinamid 95.6 0.0093 2E-07 52.6 2.8 64 140-203 2-82 (169)
290 PRK10751 molybdopterin-guanine 95.5 0.016 3.5E-07 51.1 4.3 27 136-162 5-31 (173)
291 PLN02674 adenylate kinase 95.5 0.042 9.1E-07 51.4 7.2 75 138-212 32-127 (244)
292 PF03205 MobB: Molybdopterin g 95.5 0.014 3.1E-07 49.7 3.7 25 138-162 1-25 (140)
293 PRK05439 pantothenate kinase; 95.5 0.019 4.2E-07 55.5 5.0 28 134-161 83-110 (311)
294 PF00448 SRP54: SRP54-type pro 95.5 0.013 2.9E-07 53.0 3.7 26 137-162 1-26 (196)
295 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.021 4.5E-07 52.5 5.1 102 137-238 29-160 (213)
296 COG3854 SpoIIIAA ncharacterize 95.5 0.04 8.8E-07 50.3 6.7 92 137-231 137-252 (308)
297 PRK12339 2-phosphoglycerate ki 95.5 0.012 2.7E-07 53.2 3.5 26 137-162 3-28 (197)
298 TIGR02902 spore_lonB ATP-depen 95.5 0.021 4.5E-07 59.9 5.5 45 114-160 65-109 (531)
299 COG0563 Adk Adenylate kinase a 95.5 0.012 2.5E-07 52.5 3.1 24 139-162 2-25 (178)
300 KOG3347 Predicted nucleotide k 95.4 0.012 2.5E-07 49.9 2.8 26 137-162 7-32 (176)
301 TIGR01313 therm_gnt_kin carboh 95.4 0.0099 2.1E-07 51.9 2.4 23 140-162 1-23 (163)
302 TIGR00390 hslU ATP-dependent p 95.4 0.017 3.8E-07 57.7 4.3 50 114-163 12-73 (441)
303 TIGR00708 cobA cob(I)alamin ad 95.3 0.046 9.9E-07 48.2 6.3 94 137-233 5-141 (173)
304 PRK14529 adenylate kinase; Pro 95.3 0.06 1.3E-06 49.7 7.4 74 140-213 3-96 (223)
305 cd01394 radB RadB. The archaea 95.3 0.025 5.4E-07 52.0 5.0 38 124-161 6-43 (218)
306 COG0488 Uup ATPase components 95.3 0.33 7.1E-06 50.7 13.6 54 189-248 452-511 (530)
307 PRK13975 thymidylate kinase; P 95.3 0.016 3.4E-07 52.3 3.5 25 138-162 3-27 (196)
308 PRK14526 adenylate kinase; Pro 95.3 0.052 1.1E-06 49.7 6.9 76 140-215 3-99 (211)
309 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.051 1.1E-06 49.5 6.8 102 136-239 28-158 (204)
310 TIGR03263 guanyl_kin guanylate 95.3 0.013 2.9E-07 52.0 2.9 25 138-162 2-26 (180)
311 PRK13946 shikimate kinase; Pro 95.3 0.014 3E-07 52.3 3.1 27 137-163 10-36 (184)
312 PRK14738 gmk guanylate kinase; 95.3 0.018 3.8E-07 52.6 3.7 28 133-160 9-36 (206)
313 COG4618 ArpD ABC-type protease 95.2 0.054 1.2E-06 54.9 7.2 22 137-158 362-383 (580)
314 PRK10867 signal recognition pa 95.2 0.054 1.2E-06 55.0 7.4 26 136-161 99-124 (433)
315 COG1703 ArgK Putative periplas 95.2 0.025 5.4E-07 53.6 4.6 40 124-163 38-77 (323)
316 cd01133 F1-ATPase_beta F1 ATP 95.2 0.035 7.5E-07 52.7 5.6 27 137-163 69-95 (274)
317 PLN02200 adenylate kinase fami 95.2 0.018 3.9E-07 53.7 3.6 27 136-162 42-68 (234)
318 PRK14527 adenylate kinase; Pro 95.2 0.018 3.9E-07 51.8 3.5 27 136-162 5-31 (191)
319 COG5635 Predicted NTPase (NACH 95.2 0.24 5.1E-06 55.0 12.9 177 137-314 222-449 (824)
320 PRK00300 gmk guanylate kinase; 95.2 0.015 3.2E-07 52.9 3.0 26 136-161 4-29 (205)
321 PRK03846 adenylylsulfate kinas 95.2 0.021 4.5E-07 51.8 3.9 28 135-162 22-49 (198)
322 PRK04182 cytidylate kinase; Pr 95.2 0.016 3.6E-07 51.2 3.2 25 139-163 2-26 (180)
323 COG1428 Deoxynucleoside kinase 95.2 0.016 3.5E-07 52.2 3.0 27 137-163 4-30 (216)
324 TIGR03574 selen_PSTK L-seryl-t 95.2 0.015 3.3E-07 54.7 3.0 24 139-162 1-24 (249)
325 PRK05057 aroK shikimate kinase 95.2 0.018 3.9E-07 50.9 3.3 26 137-162 4-29 (172)
326 smart00534 MUTSac ATPase domai 95.1 0.012 2.6E-07 52.7 2.1 99 139-238 1-128 (185)
327 cd02027 APSK Adenosine 5'-phos 95.1 0.017 3.6E-07 49.9 2.9 24 139-162 1-24 (149)
328 PF03215 Rad17: Rad17 cell cyc 95.1 0.023 4.9E-07 59.1 4.4 48 116-163 21-71 (519)
329 PRK13948 shikimate kinase; Pro 95.1 0.019 4.1E-07 51.3 3.3 28 136-163 9-36 (182)
330 PHA02244 ATPase-like protein 95.1 0.041 8.9E-07 54.3 5.9 48 112-163 94-145 (383)
331 PRK09435 membrane ATPase/prote 95.1 0.032 6.9E-07 54.6 5.1 38 125-162 44-81 (332)
332 cd01428 ADK Adenylate kinase ( 95.1 0.017 3.7E-07 51.8 3.0 23 140-162 2-24 (194)
333 TIGR00959 ffh signal recogniti 95.1 0.086 1.9E-06 53.5 8.2 27 136-162 98-124 (428)
334 PRK14532 adenylate kinase; Pro 95.1 0.017 3.7E-07 51.7 2.9 24 140-163 3-26 (188)
335 TIGR02173 cyt_kin_arch cytidyl 95.0 0.02 4.2E-07 50.2 3.2 24 139-162 2-25 (171)
336 PRK13235 nifH nitrogenase redu 95.0 0.029 6.2E-07 53.6 4.6 24 138-161 2-25 (274)
337 PF06309 Torsin: Torsin; Inte 95.0 0.033 7.1E-07 46.2 4.2 48 115-162 26-78 (127)
338 TIGR00554 panK_bact pantothena 95.0 0.025 5.5E-07 54.3 4.1 26 135-160 60-85 (290)
339 TIGR00416 sms DNA repair prote 95.0 0.063 1.4E-06 55.1 7.2 42 121-162 78-119 (454)
340 PRK14531 adenylate kinase; Pro 95.0 0.022 4.8E-07 50.9 3.4 24 139-162 4-27 (183)
341 PRK05201 hslU ATP-dependent pr 95.0 0.028 6E-07 56.3 4.4 50 114-163 15-76 (443)
342 cd00071 GMPK Guanosine monopho 95.0 0.017 3.8E-07 49.0 2.6 23 139-161 1-23 (137)
343 COG1066 Sms Predicted ATP-depe 95.0 0.092 2E-06 52.0 7.8 83 121-203 77-177 (456)
344 PRK03731 aroL shikimate kinase 95.0 0.021 4.6E-07 50.2 3.3 25 139-163 4-28 (171)
345 TIGR01420 pilT_fam pilus retra 94.9 0.044 9.5E-07 54.2 5.7 95 137-234 122-232 (343)
346 PF08477 Miro: Miro-like prote 94.9 0.022 4.8E-07 46.5 3.1 22 140-161 2-23 (119)
347 PRK15453 phosphoribulokinase; 94.9 0.027 5.8E-07 53.5 3.9 28 135-162 3-30 (290)
348 PF13521 AAA_28: AAA domain; P 94.9 0.021 4.6E-07 49.9 3.1 21 140-160 2-22 (163)
349 PRK10078 ribose 1,5-bisphospho 94.9 0.02 4.4E-07 51.3 3.0 24 138-161 3-26 (186)
350 TIGR00073 hypB hydrogenase acc 94.9 0.027 5.8E-07 51.4 3.8 28 134-161 19-46 (207)
351 PLN02318 phosphoribulokinase/u 94.8 0.031 6.8E-07 58.2 4.5 29 133-161 61-89 (656)
352 PRK11823 DNA repair protein Ra 94.8 0.084 1.8E-06 54.1 7.6 40 123-162 66-105 (446)
353 PTZ00088 adenylate kinase 1; P 94.8 0.023 5E-07 52.7 3.2 24 140-163 9-32 (229)
354 PRK05537 bifunctional sulfate 94.8 0.038 8.2E-07 58.3 5.2 48 115-162 370-417 (568)
355 cd03243 ABC_MutS_homologs The 94.8 0.025 5.5E-07 51.3 3.4 99 138-238 30-157 (202)
356 cd01983 Fer4_NifH The Fer4_Nif 94.8 0.028 6E-07 43.7 3.2 24 139-162 1-24 (99)
357 PF08433 KTI12: Chromatin asso 94.8 0.027 5.9E-07 53.6 3.7 26 138-163 2-27 (270)
358 TIGR00176 mobB molybdopterin-g 94.8 0.026 5.5E-07 49.1 3.2 24 139-162 1-24 (155)
359 PF01078 Mg_chelatase: Magnesi 94.8 0.036 7.8E-07 50.1 4.2 43 114-160 3-45 (206)
360 COG1124 DppF ABC-type dipeptid 94.8 0.023 5E-07 52.2 3.0 23 137-159 33-55 (252)
361 PRK14737 gmk guanylate kinase; 94.7 0.028 6.1E-07 50.4 3.3 27 136-162 3-29 (186)
362 PHA02530 pseT polynucleotide k 94.7 0.026 5.5E-07 54.6 3.3 24 138-161 3-26 (300)
363 PLN02459 probable adenylate ki 94.7 0.051 1.1E-06 51.2 5.1 76 139-214 31-129 (261)
364 COG0237 CoaE Dephospho-CoA kin 94.7 0.027 5.9E-07 51.0 3.2 22 138-159 3-24 (201)
365 PRK01184 hypothetical protein; 94.7 0.026 5.6E-07 50.4 3.1 22 138-160 2-23 (184)
366 PLN02348 phosphoribulokinase 94.7 0.033 7.3E-07 55.3 4.1 28 134-161 46-73 (395)
367 TIGR00750 lao LAO/AO transport 94.7 0.052 1.1E-06 52.6 5.3 37 126-162 23-59 (300)
368 PF13245 AAA_19: Part of AAA d 94.7 0.035 7.7E-07 41.9 3.3 24 137-160 10-33 (76)
369 KOG0737 AAA+-type ATPase [Post 94.7 0.3 6.4E-06 47.7 10.3 50 114-163 92-153 (386)
370 KOG1532 GTPase XAB1, interacts 94.7 0.029 6.2E-07 52.4 3.2 28 136-163 18-45 (366)
371 PRK05342 clpX ATP-dependent pr 94.7 0.036 7.8E-07 56.0 4.3 50 114-163 71-134 (412)
372 TIGR02237 recomb_radB DNA repa 94.6 0.037 7.9E-07 50.5 4.0 32 130-161 5-36 (209)
373 CHL00081 chlI Mg-protoporyphyr 94.6 0.033 7.1E-07 54.9 3.8 50 111-162 14-63 (350)
374 PRK13185 chlL protochlorophyll 94.6 0.045 9.8E-07 52.1 4.7 24 138-161 3-26 (270)
375 PRK09361 radB DNA repair and r 94.6 0.049 1.1E-06 50.3 4.9 37 125-161 11-47 (225)
376 cd03285 ABC_MSH2_euk MutS2 hom 94.6 0.066 1.4E-06 49.5 5.6 101 136-237 29-158 (222)
377 TIGR03499 FlhF flagellar biosy 94.6 0.034 7.5E-07 53.3 3.9 26 136-161 193-218 (282)
378 cd01120 RecA-like_NTPases RecA 94.6 0.027 5.8E-07 48.5 2.8 24 139-162 1-24 (165)
379 PRK08356 hypothetical protein; 94.6 0.032 7E-07 50.4 3.5 22 137-158 5-26 (195)
380 COG1224 TIP49 DNA helicase TIP 94.6 0.049 1.1E-06 52.8 4.6 53 111-163 36-91 (450)
381 COG2019 AdkA Archaeal adenylat 94.6 0.036 7.9E-07 48.0 3.4 25 137-161 4-28 (189)
382 PRK06761 hypothetical protein; 94.5 0.03 6.5E-07 53.4 3.2 25 138-162 4-28 (282)
383 PRK12724 flagellar biosynthesi 94.5 0.079 1.7E-06 53.3 6.2 25 137-161 223-247 (432)
384 TIGR01351 adk adenylate kinase 94.5 0.029 6.2E-07 51.3 3.0 23 140-162 2-24 (210)
385 cd02022 DPCK Dephospho-coenzym 94.5 0.026 5.7E-07 50.2 2.7 21 139-159 1-21 (179)
386 PRK00279 adk adenylate kinase; 94.5 0.031 6.6E-07 51.3 3.1 25 139-163 2-26 (215)
387 cd03115 SRP The signal recogni 94.5 0.039 8.5E-07 48.6 3.7 24 139-162 2-25 (173)
388 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.048 1E-06 53.2 4.5 51 113-163 60-114 (358)
389 cd01672 TMPK Thymidine monopho 94.5 0.035 7.5E-07 49.8 3.4 24 139-162 2-25 (200)
390 PRK09825 idnK D-gluconate kina 94.5 0.032 6.9E-07 49.6 3.1 25 138-162 4-28 (176)
391 KOG0651 26S proteasome regulat 94.5 0.028 6.1E-07 53.4 2.8 95 137-236 166-285 (388)
392 PRK10463 hydrogenase nickel in 94.5 0.047 1E-06 52.2 4.4 30 134-163 101-130 (290)
393 PRK13695 putative NTPase; Prov 94.5 0.035 7.7E-07 49.0 3.4 24 139-162 2-25 (174)
394 PRK02496 adk adenylate kinase; 94.5 0.033 7.1E-07 49.7 3.2 24 139-162 3-26 (184)
395 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.043 9.4E-07 52.0 4.1 26 135-160 34-59 (259)
396 TIGR03375 type_I_sec_LssB type 94.4 0.17 3.6E-06 55.2 9.1 23 137-159 491-513 (694)
397 PRK14528 adenylate kinase; Pro 94.4 0.037 8E-07 49.6 3.4 25 138-162 2-26 (186)
398 cd01129 PulE-GspE PulE/GspE Th 94.4 0.044 9.6E-07 52.0 4.1 90 122-214 68-169 (264)
399 cd00820 PEPCK_HprK Phosphoenol 94.4 0.037 8E-07 44.7 3.0 22 137-158 15-36 (107)
400 PRK13234 nifH nitrogenase redu 94.4 0.057 1.2E-06 52.2 4.9 26 136-161 3-28 (295)
401 PRK13657 cyclic beta-1,2-gluca 94.4 0.059 1.3E-06 57.4 5.5 24 137-160 361-384 (588)
402 PRK12338 hypothetical protein; 94.4 0.037 7.9E-07 53.7 3.5 27 137-163 4-30 (319)
403 cd03116 MobB Molybdenum is an 94.3 0.049 1.1E-06 47.5 3.9 25 138-162 2-26 (159)
404 COG0714 MoxR-like ATPases [Gen 94.3 0.044 9.4E-07 53.9 4.0 46 114-163 24-69 (329)
405 PF03193 DUF258: Protein of un 94.3 0.059 1.3E-06 46.9 4.3 36 121-161 24-59 (161)
406 TIGR00041 DTMP_kinase thymidyl 94.3 0.047 1E-06 49.1 3.9 25 138-162 4-28 (195)
407 PRK12727 flagellar biosynthesi 94.3 0.2 4.4E-06 51.8 8.7 25 137-161 350-374 (559)
408 PRK14493 putative bifunctional 94.3 0.043 9.3E-07 52.3 3.7 25 138-162 2-26 (274)
409 PF13086 AAA_11: AAA domain; P 94.3 0.05 1.1E-06 49.9 4.1 36 122-161 6-41 (236)
410 TIGR00382 clpX endopeptidase C 94.3 0.053 1.1E-06 54.7 4.4 50 113-162 76-141 (413)
411 KOG1969 DNA replication checkp 94.3 0.037 8E-07 58.3 3.4 28 135-162 324-351 (877)
412 COG0194 Gmk Guanylate kinase [ 94.2 0.044 9.6E-07 48.4 3.3 25 137-161 4-28 (191)
413 COG2274 SunT ABC-type bacterio 94.2 0.091 2E-06 56.7 6.4 24 137-160 499-522 (709)
414 cd01123 Rad51_DMC1_radA Rad51_ 94.2 0.053 1.2E-06 50.3 4.1 35 126-160 8-42 (235)
415 KOG0736 Peroxisome assembly fa 94.2 0.56 1.2E-05 50.1 11.7 171 114-288 401-599 (953)
416 COG0396 sufC Cysteine desulfur 94.2 0.12 2.6E-06 47.3 6.0 62 184-245 152-217 (251)
417 PRK13768 GTPase; Provisional 94.1 0.05 1.1E-06 51.3 3.8 24 138-161 3-26 (253)
418 PF00005 ABC_tran: ABC transpo 94.1 0.038 8.2E-07 46.5 2.7 24 138-161 12-35 (137)
419 cd04139 RalA_RalB RalA/RalB su 94.1 0.038 8.3E-07 47.6 2.7 22 139-160 2-23 (164)
420 cd03287 ABC_MSH3_euk MutS3 hom 94.1 0.051 1.1E-06 50.2 3.6 102 136-238 30-160 (222)
421 COG1763 MobB Molybdopterin-gua 94.1 0.048 1E-06 47.5 3.2 27 137-163 2-28 (161)
422 TIGR01287 nifH nitrogenase iro 94.0 0.047 1E-06 52.1 3.5 25 138-162 1-25 (275)
423 TIGR02030 BchI-ChlI magnesium 94.0 0.068 1.5E-06 52.6 4.6 46 114-161 4-49 (337)
424 PF11868 DUF3388: Protein of u 94.0 0.094 2E-06 44.9 4.8 41 122-162 37-81 (192)
425 PRK13407 bchI magnesium chelat 94.0 0.048 1E-06 53.5 3.5 48 112-161 6-53 (334)
426 cd01130 VirB11-like_ATPase Typ 94.0 0.034 7.4E-07 49.8 2.3 24 137-160 25-48 (186)
427 PRK08099 bifunctional DNA-bind 94.0 0.044 9.5E-07 55.2 3.3 28 136-163 218-245 (399)
428 KOG0066 eIF2-interacting prote 94.0 0.12 2.5E-06 51.5 6.0 33 129-161 605-637 (807)
429 PF06068 TIP49: TIP49 C-termin 94.0 0.053 1.2E-06 53.2 3.6 53 111-163 21-76 (398)
430 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.074 1.6E-06 49.6 4.6 37 124-160 8-44 (237)
431 PRK05986 cob(I)alamin adenolsy 93.9 0.17 3.6E-06 45.4 6.5 95 136-233 21-159 (191)
432 PLN02165 adenylate isopentenyl 93.9 0.05 1.1E-06 53.0 3.4 27 136-162 42-68 (334)
433 COG1100 GTPase SAR1 and relate 93.9 0.038 8.2E-07 50.5 2.5 25 138-162 6-30 (219)
434 PHA02774 E1; Provisional 93.9 0.093 2E-06 54.6 5.5 39 122-161 420-458 (613)
435 PF01926 MMR_HSR1: 50S ribosom 93.9 0.046 9.9E-07 44.6 2.7 21 140-160 2-22 (116)
436 TIGR01618 phage_P_loop phage n 93.9 0.038 8.2E-07 50.8 2.4 22 137-158 12-33 (220)
437 cd01124 KaiC KaiC is a circadi 93.9 0.043 9.3E-07 48.8 2.8 22 140-161 2-23 (187)
438 TIGR01650 PD_CobS cobaltochela 93.9 0.086 1.9E-06 51.2 5.0 39 121-163 52-90 (327)
439 PLN02796 D-glycerate 3-kinase 93.9 0.05 1.1E-06 53.2 3.3 26 136-161 99-124 (347)
440 PF03029 ATP_bind_1: Conserved 93.9 0.038 8.3E-07 51.6 2.4 21 142-162 1-21 (238)
441 cd03114 ArgK-like The function 93.9 0.054 1.2E-06 46.6 3.2 24 139-162 1-24 (148)
442 TIGR00455 apsK adenylylsulfate 93.8 0.067 1.4E-06 47.7 3.9 27 136-162 17-43 (184)
443 COG0529 CysC Adenylylsulfate k 93.8 0.077 1.7E-06 46.5 4.0 29 135-163 21-49 (197)
444 cd01393 recA_like RecA is a b 93.8 0.068 1.5E-06 49.3 4.0 36 125-160 7-42 (226)
445 PRK13808 adenylate kinase; Pro 93.8 0.13 2.8E-06 50.2 6.1 24 140-163 3-26 (333)
446 KOG1051 Chaperone HSP104 and r 93.8 0.23 5E-06 54.3 8.5 92 114-206 562-672 (898)
447 PRK08154 anaerobic benzoate ca 93.8 0.063 1.4E-06 52.3 3.9 28 136-163 132-159 (309)
448 PRK00698 tmk thymidylate kinas 93.8 0.067 1.5E-06 48.4 3.9 25 138-162 4-28 (205)
449 TIGR00017 cmk cytidylate kinas 93.8 0.057 1.2E-06 49.7 3.4 25 138-162 3-27 (217)
450 TIGR01818 ntrC nitrogen regula 93.8 0.59 1.3E-05 48.1 11.3 49 114-162 134-182 (463)
451 cd02117 NifH_like This family 93.8 0.061 1.3E-06 49.2 3.6 24 138-161 1-24 (212)
452 PF07724 AAA_2: AAA domain (Cd 93.8 0.069 1.5E-06 47.2 3.8 26 137-162 3-28 (171)
453 cd04119 RJL RJL (RabJ-Like) su 93.8 0.047 1E-06 47.2 2.7 21 140-160 3-23 (168)
454 COG1116 TauB ABC-type nitrate/ 93.7 0.053 1.1E-06 50.2 3.0 23 137-159 29-51 (248)
455 KOG0058 Peptide exporter, ABC 93.7 0.23 5E-06 52.5 8.1 24 137-160 494-517 (716)
456 PRK04220 2-phosphoglycerate ki 93.7 0.057 1.2E-06 51.8 3.4 27 136-162 91-117 (301)
457 PF13479 AAA_24: AAA domain 93.7 0.04 8.7E-07 50.5 2.2 20 138-157 4-23 (213)
458 PRK14730 coaE dephospho-CoA ki 93.7 0.059 1.3E-06 48.7 3.3 23 138-160 2-24 (195)
459 PRK05800 cobU adenosylcobinami 93.7 0.17 3.6E-06 44.7 6.0 24 139-162 3-26 (170)
460 COG1126 GlnQ ABC-type polar am 93.7 0.054 1.2E-06 49.1 2.9 22 137-158 28-49 (240)
461 PF00006 ATP-synt_ab: ATP synt 93.7 0.055 1.2E-06 49.6 3.0 26 138-163 16-41 (215)
462 smart00173 RAS Ras subfamily o 93.7 0.054 1.2E-06 46.9 2.9 22 139-160 2-23 (164)
463 cd03286 ABC_MSH6_euk MutS6 hom 93.7 0.074 1.6E-06 49.0 3.9 101 137-238 30-159 (218)
464 PF00625 Guanylate_kin: Guanyl 93.7 0.063 1.4E-06 47.9 3.4 26 137-162 2-27 (183)
465 PRK12723 flagellar biosynthesi 93.6 0.094 2E-06 52.5 4.8 27 136-162 173-199 (388)
466 TIGR02857 CydD thiol reductant 93.6 0.18 3.9E-06 52.9 7.3 24 136-159 347-370 (529)
467 COG2401 ABC-type ATPase fused 93.6 0.14 3E-06 50.8 5.8 27 137-163 409-435 (593)
468 cd02034 CooC The accessory pro 93.6 0.076 1.6E-06 43.7 3.5 22 140-161 2-23 (116)
469 cd01862 Rab7 Rab7 subfamily. 93.6 0.049 1.1E-06 47.4 2.6 22 139-160 2-23 (172)
470 PRK08533 flagellar accessory p 93.6 0.055 1.2E-06 50.3 3.0 27 135-161 22-48 (230)
471 PF02367 UPF0079: Uncharacteri 93.6 0.073 1.6E-06 44.2 3.3 27 136-162 14-40 (123)
472 COG0003 ArsA Predicted ATPase 93.6 0.074 1.6E-06 51.8 3.9 24 137-160 2-25 (322)
473 PRK05703 flhF flagellar biosyn 93.6 0.096 2.1E-06 53.2 4.9 26 137-162 221-246 (424)
474 smart00072 GuKc Guanylate kina 93.6 0.062 1.3E-06 48.0 3.1 25 137-161 2-26 (184)
475 PRK11176 lipid transporter ATP 93.5 0.11 2.5E-06 55.1 5.6 24 137-160 369-392 (582)
476 KOG0927 Predicted transporter 93.5 0.12 2.6E-06 52.9 5.3 26 136-161 100-125 (614)
477 KOG2170 ATPase of the AAA+ sup 93.5 0.29 6.3E-06 46.5 7.5 92 122-217 94-203 (344)
478 PF02374 ArsA_ATPase: Anion-tr 93.5 0.068 1.5E-06 51.9 3.5 24 138-161 2-25 (305)
479 PRK06851 hypothetical protein; 93.5 0.31 6.7E-06 48.3 8.1 26 137-162 214-239 (367)
480 PRK07429 phosphoribulokinase; 93.5 0.082 1.8E-06 51.8 4.1 29 134-162 5-33 (327)
481 PRK14722 flhF flagellar biosyn 93.5 0.069 1.5E-06 53.1 3.6 25 137-161 137-161 (374)
482 PF13604 AAA_30: AAA domain; P 93.5 0.11 2.4E-06 47.0 4.7 90 136-230 17-129 (196)
483 cd04138 H_N_K_Ras_like H-Ras/N 93.4 0.059 1.3E-06 46.3 2.7 21 140-160 4-24 (162)
484 KOG0742 AAA+-type ATPase [Post 93.4 0.29 6.2E-06 48.5 7.5 118 137-261 384-527 (630)
485 COG4555 NatA ABC-type Na+ tran 93.4 0.37 8.1E-06 43.3 7.6 27 135-161 26-52 (245)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.063 1.4E-06 49.2 3.0 24 137-160 30-53 (218)
487 cd02026 PRK Phosphoribulokinas 93.4 0.058 1.2E-06 51.5 2.8 23 139-161 1-23 (273)
488 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.11 2.4E-06 48.0 4.7 36 125-160 8-43 (229)
489 cd04163 Era Era subfamily. Er 93.4 0.068 1.5E-06 45.8 3.1 24 137-160 3-26 (168)
490 cd04155 Arl3 Arl3 subfamily. 93.4 0.058 1.3E-06 47.2 2.6 24 137-160 14-37 (173)
491 PRK07132 DNA polymerase III su 93.4 3.4 7.3E-05 40.0 14.9 144 137-293 18-185 (299)
492 TIGR00764 lon_rel lon-related 93.4 0.06 1.3E-06 57.3 3.2 46 112-161 16-61 (608)
493 COG3640 CooC CO dehydrogenase 93.4 0.084 1.8E-06 48.4 3.6 23 139-161 2-24 (255)
494 cd02029 PRK_like Phosphoribulo 93.4 0.069 1.5E-06 50.3 3.2 24 139-162 1-24 (277)
495 TIGR02012 tigrfam_recA protein 93.3 0.11 2.4E-06 50.5 4.7 38 125-162 42-80 (321)
496 PRK11174 cysteine/glutathione 93.3 0.15 3.2E-06 54.4 6.0 25 136-160 375-399 (588)
497 TIGR00231 small_GTP small GTP- 93.3 0.059 1.3E-06 45.5 2.5 22 139-160 3-24 (161)
498 PRK06067 flagellar accessory p 93.3 0.1 2.2E-06 48.5 4.3 37 124-160 12-48 (234)
499 cd03225 ABC_cobalt_CbiO_domain 93.3 0.069 1.5E-06 48.7 3.0 25 136-160 26-50 (211)
500 KOG0740 AAA+-type ATPase [Post 93.3 1.6 3.5E-05 44.0 12.8 69 135-205 184-256 (428)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.6e-81 Score=698.58 Aligned_cols=428 Identities=38% Similarity=0.637 Sum_probs=387.6
Q ss_pred cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHhccccccccC
Q 037205 4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRS 83 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~~ 83 (439)
.|+||++|||+|++|+++++++|+||||+|||+|||+|+|+||++|.++..+. ..+++++||+||+++|+++||++..
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCC
Confidence 59999999999999999999999999999999999999999999999988754 3568999999999999999999987
Q ss_pred CcchhhHHHHHHHhhhhcccccccCCCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 84 IRPESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 84 ~~~e~~~i~~iv~~i~~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...|+++|++||++|.+++..+++ .+..++|||+.+++++.++|..+.+++++|+||||||+||||||+.+|+++..
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~---~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPS---NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccC---cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 667999999999999999987766 67789999999999999999877888999999999999999999999998765
Q ss_pred ------HH-------------------------HHHHHHHHHhcCCC-CCCcHHHHHHHhccCCceEEecCCCCHHHHHH
Q 037205 164 ------YL-------------------------LATKLISNLLKDEN-AIPGIDLNFRRLSRMKVLIFFYDVTCFSQLES 211 (439)
Q Consensus 164 ------f~-------------------------~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 211 (439)
|+ ++.+++..+..... .......+++++.++++||||||||+..+|+.
T Consensus 234 ~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~ 313 (1153)
T PLN03210 234 QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDA 313 (1153)
T ss_pred cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHH
Confidence 21 22334444444332 23344678889999999999999999999999
Q ss_pred HhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 212 LMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 212 l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
+.....++++||+||||||+..++..+++..+|+++.|+.++|++||+++||+...+++++.+++++|+++|+|+||||+
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 99888889999999999999999988888899999999999999999999998877777889999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCH-HhHHHHhcccccccc-----------cCCCchhHHHH
Q 037205 292 VLGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGLDN-KEKNIFLGVACFFQV-----------RIGFNLEIGVS 359 (439)
Q Consensus 292 ~~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~-~~k~~fl~la~f~~~-----------~~~~~~~~~l~ 359 (439)
++|++|++++..+|+.++++++..++..|..+|++||++|++ .+|.||++|||||.+ .+++.++..++
T Consensus 394 vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~ 473 (1153)
T PLN03210 394 VLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLK 473 (1153)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChH
Confidence 999999999999999999999988888999999999999986 589999999999987 45667778899
Q ss_pred HHhhCCceEEccCCeEEecHHHHHHHHHHHhhhcCCCCCeeeccChhhHHHHHhhCcCCccEEEEEEecCCcceeccc
Q 037205 360 VLVDKSLIVISNNNKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVLTYNTASNLLWIITLEYSSIYKLDMD 437 (439)
Q Consensus 360 ~L~~~sLi~~~~~~~~~mHdlv~~~a~~i~~~e~~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~~~~~~~~~~~~~ 437 (439)
.|+++|||++. .+++.||||+|+||++++++++.+|++|+++|+++|+++++.+++|+++|+||++|++++.+++++
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 99999999987 678999999999999999999888999999999999999999999999999999999999887654
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-44 Score=389.16 Aligned_cols=273 Identities=29% Similarity=0.396 Sum_probs=239.4
Q ss_pred ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh-H--------HH----------HHHHHHHHHhcC
Q 037205 117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS-R--------YL----------LATKLISNLLKD 177 (439)
Q Consensus 117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~--------f~----------~~~~ll~~l~~~ 177 (439)
||.+..++.+.+.|..++ ..+++|+||||+||||||++++|+.. . |+ ++.+++..+...
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 999999999999998544 38999999999999999999999987 3 44 788888877764
Q ss_pred CCCC------CcHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-cCCCeEEEcCCCC
Q 037205 178 ENAI------PGIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-WGVSKIYEMEALE 250 (439)
Q Consensus 178 ~~~~------~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l~~L~ 250 (439)
.... .....+.+.|+++|+||||||||+..+|+.+..+++...+||+|++|||+..|+.. +++...++++.|+
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred CcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 4311 15678899999999999999999999999999999988889999999999999999 8888999999999
Q ss_pred HHHHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcC-CCHHHHHHHHHHHhcC-----C--CccHH
Q 037205 251 YHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYK-REKEVWESAINKLQRI-----L--YPSIL 321 (439)
Q Consensus 251 ~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~-----~--~~~i~ 321 (439)
++|||+||++.+|... ...+...+++++++++|+|+|||+.++|..|+. .++.+|+.+.+.+... + .+.+.
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999998764 333458999999999999999999999999998 4677999999988664 1 35689
Q ss_pred HHHHHhhcCCCHHhHHHHhcccccccc-------------cCCC------------chhHHHHHHhhCCceEEccC----
Q 037205 322 EVLKISYDGLDNKEKNIFLGVACFFQV-------------RIGF------------NLEIGVSVLVDKSLIVISNN---- 372 (439)
Q Consensus 322 ~~l~~Sy~~L~~~~k~~fl~la~f~~~-------------~~~~------------~~~~~l~~L~~~sLi~~~~~---- 372 (439)
.+|++||+.|+++.|.||+|||+||.+ ++|+ .+..++++|+++||+....+
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 999999999999999999999999998 5553 25678999999999997642
Q ss_pred CeEEecHHHHHHHHHHHhh
Q 037205 373 NKITMHDLLQELGRDIVSQ 391 (439)
Q Consensus 373 ~~~~mHdlv~~~a~~i~~~ 391 (439)
..+.|||+||+||..++++
T Consensus 479 ~~~kmHDvvRe~al~ias~ 497 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASD 497 (889)
T ss_pred eEEEeeHHHHHHHHHHhcc
Confidence 4699999999999999993
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-37 Score=299.18 Aligned_cols=249 Identities=29% Similarity=0.437 Sum_probs=191.4
Q ss_pred ccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----------HHHHHHHHHhcCCCC
Q 037205 119 VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----------LATKLISNLLKDENA 180 (439)
Q Consensus 119 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----------~~~~ll~~l~~~~~~ 180 (439)
||.++++|.+.|...+++.++|+|+||||+||||||.+++++... |+ +...++..+......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 788999999999876688999999999999999999999988443 43 677788777766432
Q ss_pred C----C---cHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCC-CeEEEcCCCCHH
Q 037205 181 I----P---GIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGV-SKIYEMEALEYH 252 (439)
Q Consensus 181 ~----~---~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~L~~~ 252 (439)
. + ....+.+.|.++++||||||||+...|+.+...++.+..|++||||||+..++..++. ...|++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 1 5688889999999999999999999998888877777789999999999988877654 678999999999
Q ss_pred HHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcC-CCHHHHHHHHHHHhcCC------CccHHHHH
Q 037205 253 HALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYK-REKEVWESAINKLQRIL------YPSILEVL 324 (439)
Q Consensus 253 ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~------~~~i~~~l 324 (439)
||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+. .+..+|+..++++.... ...+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997655 334456778999999999999999999999954 36788999998876543 36699999
Q ss_pred HHhhcCCCHHhHHHHhcccccccccCCCchhHHHHHHhhCCceE
Q 037205 325 KISYDGLDNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIV 368 (439)
Q Consensus 325 ~~Sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~l~~L~~~sLi~ 368 (439)
.+||+.|+++.|.||++||+||.+ ..+..+..+.....-++|.
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~-~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEG-VPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTT-S-EEHHHHHHHHTT-HHTC
T ss_pred eechhcCCccHHHHHhhCcCCCCC-ceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999984 2233444555555555543
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=99.80 E-value=8.6e-20 Score=158.63 Aligned_cols=84 Identities=26% Similarity=0.384 Sum_probs=72.2
Q ss_pred cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccc-cccchhhHHHHHHHhhhchHHHHHHHHHHHHHhcccccccc
Q 037205 4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQ-TGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYR 82 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q-~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~ 82 (439)
.|+||++||++|++|+ ..|+||||+|||+|||+| .|.+ ..+++++||+||+++++++|++++
T Consensus 94 ~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 94 ESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred cchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCC
Confidence 6999999999999984 389999999999999997 4431 246899999999999999999876
Q ss_pred CC-cchhhHHHHHHHhhhhcccc
Q 037205 83 SI-RPESELINEVVNHILKRLLE 104 (439)
Q Consensus 83 ~~-~~e~~~i~~iv~~i~~~l~~ 104 (439)
.. .+|+++|++|+..|.+.|..
T Consensus 157 ~~~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 157 SLKGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 42 33999999999999988754
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.60 E-value=7.2e-14 Score=155.43 Aligned_cols=268 Identities=16% Similarity=0.172 Sum_probs=170.7
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----------HHHHHHHHHhcC
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----------LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----------~~~~ll~~l~~~ 177 (439)
.....+|-|..-++.+.. ....+++.|+|++|.||||++.++...... |+ +...++..+...
T Consensus 11 ~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred CCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 445678888866555543 346789999999999999999998764422 33 223344444211
Q ss_pred CC-------------C-CC---cHHHHHHHhc--cCCceEEecCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCch
Q 037205 178 EN-------------A-IP---GIDLNFRRLS--RMKVLIFFYDVTCFS------QLESLMGSLDWLTPVSRIILTTRNK 232 (439)
Q Consensus 178 ~~-------------~-~~---~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~ 232 (439)
.. . .. ....+...+. +.+++|||||+...+ .+..+... ..++.++|||||..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv~~sR~~ 162 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLVVLSRNL 162 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEEEEeCCC
Confidence 11 0 01 1222222332 578999999996532 23344433 24667888999974
Q ss_pred HHHH--hcC-CCeEEEcC----CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHH
Q 037205 233 QVLR--NWG-VSKIYEME----ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVW 305 (439)
Q Consensus 233 ~v~~--~~~-~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w 305 (439)
.-.. ... .....++. +|+.+|+.+||....... . ..+.+.++.+.|+|+|+++..++..+...... .
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~ 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--I---EAAESSRLCDDVEGWATALQLIALSARQNNSS-L 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-h
Confidence 2211 111 12344555 899999999997654221 1 24567899999999999999998877543210 0
Q ss_pred HHHHHHHhcCCCccHHHHHHHh-hcCCCHHhHHHHhcccccccc--------cCCCchhHHHHHHhhCCceEEc-c-C-C
Q 037205 306 ESAINKLQRILYPSILEVLKIS-YDGLDNKEKNIFLGVACFFQV--------RIGFNLEIGVSVLVDKSLIVIS-N-N-N 373 (439)
Q Consensus 306 ~~~l~~l~~~~~~~i~~~l~~S-y~~L~~~~k~~fl~la~f~~~--------~~~~~~~~~l~~L~~~sLi~~~-~-~-~ 373 (439)
......+...+...+...+.-. ++.||++.+.+++.+|+++.- ...-.....+..|.+.+++... + + .
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~ 316 (903)
T PRK04841 237 HDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGE 316 (903)
T ss_pred hhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCC
Confidence 1111222222234566655444 889999999999999998753 1222456789999999997542 2 2 3
Q ss_pred eEEecHHHHHHHHHHHhhh
Q 037205 374 KITMHDLLQELGRDIVSQE 392 (439)
Q Consensus 374 ~~~mHdlv~~~a~~i~~~e 392 (439)
+|+.|+|++++.++....+
T Consensus 317 ~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 317 WFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred EEehhHHHHHHHHHHHHhc
Confidence 6999999999999987554
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=4e-10 Score=113.63 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=139.2
Q ss_pred cCCCCCCCCcccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----------H
Q 037205 107 FRPRDNKSQLVGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----------L 166 (439)
Q Consensus 107 ~~p~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----------~ 166 (439)
+.|...+..++||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+.. ++ +
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 344467788999999999999998532 334566789999999999999999988743 11 4
Q ss_pred HHHHHHHHhcCCC---CCC---cHHHHHHHhc--cCCceEEecCCCCHH------HHHHHhcCCCCCCCCcE--EEEEeC
Q 037205 167 ATKLISNLLKDEN---AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS------QLESLMGSLDWLTPVSR--IILTTR 230 (439)
Q Consensus 167 ~~~ll~~l~~~~~---~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IiiTTR 230 (439)
...++.++..... ..+ ....+.+.+. +++.+||||+++... .+..+....... ++++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 5566666654221 111 2344455554 356899999997643 344544332211 2333 555655
Q ss_pred chHHHHhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh----CCCcHHHHHHHHhh--
Q 037205 231 NKQVLRNWG-------VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV----QGVPLALKVLGCFL-- 297 (439)
Q Consensus 231 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~----~GlPLal~~~g~~L-- 297 (439)
+..+..... ....+.+++++.++..+++..++-....+..-..+.++.+++.+ |..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 443322211 12467899999999999998776321111111123344444444 55777777764432
Q ss_pred ---cC---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccc
Q 037205 298 ---YK---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACF 345 (439)
Q Consensus 298 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f 345 (439)
++ -+.+....+++.+. .....-.+..||..+|.++..++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 24556666665541 2234556789999888877766633
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.29 E-value=6e-11 Score=115.38 Aligned_cols=238 Identities=17% Similarity=0.173 Sum_probs=139.6
Q ss_pred CCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNFR 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~~ 189 (439)
.+|||++..++.|..++... ......+.++|++|+|||+||+.+++.... +. ............+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---------~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---------ITSGPALEKPGDLAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---------EeccchhcCchhHHH
Confidence 46999999999999888631 233556889999999999999999887642 00 000000001111111
Q ss_pred Hhc--cCCceEEecCCCCH--HHHHHHhcCCC-------------------CCCCCcEEEEEeCchHHHHhc--CCCeEE
Q 037205 190 RLS--RMKVLIFFYDVTCF--SQLESLMGSLD-------------------WLTPVSRIILTTRNKQVLRNW--GVSKIY 244 (439)
Q Consensus 190 ~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~-------------------~~~~gs~IiiTTR~~~v~~~~--~~~~~~ 244 (439)
.+. +...+|++|+++.. ...+.|...+. ...+.+-|..||+...+.... .....+
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence 111 24567888888532 22222221110 011234455677764433321 123567
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhc------C---CCHHHHHHHHHHHhcC
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLY------K---REKEVWESAINKLQRI 315 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~------~---~~~~~w~~~l~~l~~~ 315 (439)
.+++++.++..+++.+.+...... -..+.+..+++.|+|.|-.+..++..+. . .+.+..+
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--------- 223 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--------- 223 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---------
Confidence 899999999999999887533222 2256778999999999977655554321 0 0111111
Q ss_pred CCccHHHHHHHhhcCCCHHhHHHHh-cccccccc------------cCCCchhHHHH-HHhhCCceEEccCCe
Q 037205 316 LYPSILEVLKISYDGLDNKEKNIFL-GVACFFQV------------RIGFNLEIGVS-VLVDKSLIVISNNNK 374 (439)
Q Consensus 316 ~~~~i~~~l~~Sy~~L~~~~k~~fl-~la~f~~~------------~~~~~~~~~l~-~L~~~sLi~~~~~~~ 374 (439)
.....+...|..|++..+..+. .++.+..+ .....++..++ .|++++||.....|+
T Consensus 224 ---~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 224 ---KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred ---HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 1222356678889998887776 44556543 11223455577 699999998654444
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.29 E-value=4.2e-11 Score=111.17 Aligned_cols=173 Identities=19% Similarity=0.262 Sum_probs=96.5
Q ss_pred cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH---------HHHHH----------
Q 037205 116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL---------LATKL---------- 170 (439)
Q Consensus 116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~---------~~~~l---------- 170 (439)
|+||+.++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+.... |+ ....+
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 79999999999999873 34578899999999999999999988744 33 11111
Q ss_pred HHHHhcCCC--C------------CCcHHHHHHHhc--cCCceEEecCCCCHH-----------HHHHHhcCCCCCCCCc
Q 037205 171 ISNLLKDEN--A------------IPGIDLNFRRLS--RMKVLIFFYDVTCFS-----------QLESLMGSLDWLTPVS 223 (439)
Q Consensus 171 l~~l~~~~~--~------------~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs 223 (439)
...+..... . ......+.+.+. +++++||+||+.... .+..++.......+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 111111110 0 113344444444 345999999996544 1233333322223334
Q ss_pred EEEEEeCchHHHHh--------cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205 224 RIILTTRNKQVLRN--------WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV 292 (439)
Q Consensus 224 ~IiiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 292 (439)
+|+++-....... .+....+.+++|+.+++++++....-..... +...+..++++..+||+|..|..
T Consensus 159 -~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 -IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred -EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444444444333 2333458999999999999998865332111 12356679999999999998865
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.25 E-value=2.1e-10 Score=119.67 Aligned_cols=266 Identities=14% Similarity=0.156 Sum_probs=173.0
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH-----------HHHHHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL-----------LATKLISNL 174 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-----------~~~~ll~~l 174 (439)
..+.+.|-|..-++.+.. ..+.|.+.|..++|.|||||+.++...... |+ +...++..+
T Consensus 16 ~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred CCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 446777888766665554 346899999999999999999999764333 54 445555555
Q ss_pred hcCCCCC--------------C---cHHHHHHHhc--cCCceEEecCCCCH------HHHHHHhcCCCCCCCCcEEEEEe
Q 037205 175 LKDENAI--------------P---GIDLNFRRLS--RMKVLIFFYDVTCF------SQLESLMGSLDWLTPVSRIILTT 229 (439)
Q Consensus 175 ~~~~~~~--------------~---~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTT 229 (439)
....+.. + ..+.+...+. .++..+||||..-. .-++-|.... .++-..|+||
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~S 167 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTS 167 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEe
Confidence 4333211 1 2223333333 36889999999422 2245555544 3688999999
Q ss_pred CchHHHHhcC---CCeEEEc----CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCC-C
Q 037205 230 RNKQVLRNWG---VSKIYEM----EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKR-E 301 (439)
Q Consensus 230 R~~~v~~~~~---~~~~~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~ 301 (439)
|+..-+.... .+...++ -.++.+|+.++|.... ..+ -....++.+.+.++|.+-|+..++=.+++. +
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~--Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLP--LDAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCC--CChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 9774332211 1122333 2488999999997764 111 224568899999999999999999888842 2
Q ss_pred HHHHHHHHHHHhcCCCccHHH-HHHHhhcCCCHHhHHHHhcccccccc--------cCCCchhHHHHHHhhCCceEEc--
Q 037205 302 KEVWESAINKLQRILYPSILE-VLKISYDGLDNKEKNIFLGVACFFQV--------RIGFNLEIGVSVLVDKSLIVIS-- 370 (439)
Q Consensus 302 ~~~w~~~l~~l~~~~~~~i~~-~l~~Sy~~L~~~~k~~fl~la~f~~~--------~~~~~~~~~l~~L~~~sLi~~~-- 370 (439)
.+.-...+. .. ...+.+ ...--++.||++.|.+++-+|+++.- .........+++|.+++|+-..
T Consensus 243 ~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ld 318 (894)
T COG2909 243 AEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLD 318 (894)
T ss_pred HHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeec
Confidence 222111111 00 112222 12334689999999999999998764 2223455679999999998742
Q ss_pred -cCCeEEecHHHHHHHHHHHhhhc
Q 037205 371 -NNNKITMHDLLQELGRDIVSQES 393 (439)
Q Consensus 371 -~~~~~~mHdlv~~~a~~i~~~e~ 393 (439)
+++.|+.|.|+.+|.+...+.+.
T Consensus 319 d~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 319 DEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCCceeehhHHHHHHHHhhhcccc
Confidence 24579999999999999888764
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.22 E-value=9.9e-11 Score=115.00 Aligned_cols=245 Identities=16% Similarity=0.132 Sum_probs=142.9
Q ss_pred CCCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHH
Q 037205 112 NKSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLN 187 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l 187 (439)
...+|+|++..++.+..++.. .....+.+.|+|++|+||||||+.+++.... +. ............+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---------~~~~~~~~~~~~l 93 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---------ITSGPALEKPGDL 93 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---------EEecccccChHHH
Confidence 346799999999999888753 2334567889999999999999999887643 00 0000001111111
Q ss_pred HHHhc--cCCceEEecCCCCHH--HHHHHhcCCC-------------------CCCCCcEEEEEeCchHHHHhc--CCCe
Q 037205 188 FRRLS--RMKVLIFFYDVTCFS--QLESLMGSLD-------------------WLTPVSRIILTTRNKQVLRNW--GVSK 242 (439)
Q Consensus 188 ~~~l~--~~~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~gs~IiiTTR~~~v~~~~--~~~~ 242 (439)
...+. ...-+|++|+++... ..+.+...+. ...+.+-|..||+...+.... ....
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 11111 245678889886432 1111111100 001234455677744332221 1235
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcCCC---cc
Q 037205 243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRILY---PS 319 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~---~~ 319 (439)
.+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+. .|..... -..... ..
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~-~~~I~~~~v~~ 245 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG-DGVITKEIADK 245 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC-CCCCCHHHHHH
Confidence 68999999999999999887543322 2256789999999999975555544321 1111100 000011 22
Q ss_pred HHHHHHHhhcCCCHHhHHHHh-cccccccc-----------c-CCCchhHHHH-HHhhCCceEEccCC
Q 037205 320 ILEVLKISYDGLDNKEKNIFL-GVACFFQV-----------R-IGFNLEIGVS-VLVDKSLIVISNNN 373 (439)
Q Consensus 320 i~~~l~~Sy~~L~~~~k~~fl-~la~f~~~-----------~-~~~~~~~~l~-~L~~~sLi~~~~~~ 373 (439)
....+...+..|++..+..+. .+..|..+ + .....+..++ .|++.+||+....|
T Consensus 246 ~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 246 ALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred HHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 334456677889998888886 55666654 1 1123445677 89999999865444
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=2.4e-09 Score=106.84 Aligned_cols=255 Identities=16% Similarity=0.181 Sum_probs=147.9
Q ss_pred CCCCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------H----------
Q 037205 109 PRDNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR------------Y---------- 164 (439)
Q Consensus 109 p~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f---------- 164 (439)
|...+..++||+.++++|...|.. .....+.+.|+|++|+|||++++.+++.+.. |
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 346677899999999999999864 2234567899999999999999999986531 1
Q ss_pred HHHHHHHHHHhc--CC-C--CCC---cHHHHHHHhc--cCCceEEecCCCCHH-----HHHHHhcCC--CCC-CCCcEEE
Q 037205 165 LLATKLISNLLK--DE-N--AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS-----QLESLMGSL--DWL-TPVSRII 226 (439)
Q Consensus 165 ~~~~~ll~~l~~--~~-~--~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~~--~~~-~~gs~Ii 226 (439)
.+...++.++.. .. + ..+ ....+.+.+. +++++||||+++... .+..+.... ... +....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 155566666642 11 1 111 2234444443 467899999997661 133333221 111 1223445
Q ss_pred EEeCchHHHHhcC-------CCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCcchHHHHHHHHHHhCCCcHH-HHHHHH
Q 037205 227 LTTRNKQVLRNWG-------VSKIYEMEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYVQGVPLA-LKVLGC 295 (439)
Q Consensus 227 iTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g~ 295 (439)
.+|........+. ....+.+++++.++..+++..++- ......++..+.+..++..+.|.|-. +.++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554443222111 124678999999999999988763 22222222334455666677788744 333322
Q ss_pred hh----c-C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-c------------------
Q 037205 296 FL----Y-K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-V------------------ 348 (439)
Q Consensus 296 ~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-~------------------ 348 (439)
.. . + -+.+..+.+.+.+. .....-++..||.+++.++..++.... +
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 21 1 1 24455555555431 233445667888888877666653222 1
Q ss_pred cCCC------chhHHHHHHhhCCceEEc
Q 037205 349 RIGF------NLEIGVSVLVDKSLIVIS 370 (439)
Q Consensus 349 ~~~~------~~~~~l~~L~~~sLi~~~ 370 (439)
..|. ....++..|...|||...
T Consensus 323 ~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 0111 123468888899999864
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=4.7e-09 Score=100.10 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=97.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------HH---------HHHHHHHHHhcCCCCCC---cHHHHHHH-----hcc
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------YL---------LATKLISNLLKDENAIP---GIDLNFRR-----LSR 193 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~---------~~~~ll~~l~~~~~~~~---~~~~l~~~-----l~~ 193 (439)
...+.|+|++|+|||||++.+++.... ++ +...+...+........ ....+... ..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 457899999999999999999988652 11 23333333322211221 12222222 256
Q ss_pred CCceEEecCCCCHH--HHHHHh---cCCCCCCCCcEEEEEeCchHHHHhc----------CCCeEEEcCCCCHHHHHHHH
Q 037205 194 MKVLIFFYDVTCFS--QLESLM---GSLDWLTPVSRIILTTRNKQVLRNW----------GVSKIYEMEALEYHHALELF 258 (439)
Q Consensus 194 ~~~LlVlDdv~~~~--~~~~l~---~~~~~~~~gs~IiiTTR~~~v~~~~----------~~~~~~~l~~L~~~ea~~Lf 258 (439)
++.+||+||++... .++.+. ...........|++|.... ..... .....+.+++++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 78899999997643 344433 2211112233455555432 21111 12346789999999999998
Q ss_pred HHhhhcCCC--CCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205 259 SRHAFKRNH--PDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297 (439)
Q Consensus 259 ~~~a~~~~~--~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 297 (439)
...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 876632221 112235789999999999999999998876
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.3e-09 Score=105.15 Aligned_cols=177 Identities=18% Similarity=0.252 Sum_probs=105.1
Q ss_pred hcccccccCCCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC
Q 037205 100 KRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE 178 (439)
Q Consensus 100 ~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~ 178 (439)
.++.|....-.....+++|-+..+..+.+ .+.+....+||+||+||||||+.+...... |.- ++.+....
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~----~sAv~~gv 86 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA----LSAVTSGV 86 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEE----eccccccH
Confidence 34444443222344556666665555554 456777889999999999999998876543 210 00000000
Q ss_pred CCCC-cHHHH-HHHhccCCceEEecCCC--CHHHHHHHhcCCCCCCCCcEEEE--EeCchHHHH---hcCCCeEEEcCCC
Q 037205 179 NAIP-GIDLN-FRRLSRMKVLIFFYDVT--CFSQLESLMGSLDWLTPVSRIIL--TTRNKQVLR---NWGVSKIYEMEAL 249 (439)
Q Consensus 179 ~~~~-~~~~l-~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~---~~~~~~~~~l~~L 249 (439)
.++. ..+.- +....+++.+|++|.|. +..|-+.|++... +|.-|+| ||.|+...- ......++++++|
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L 163 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPL 163 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecC
Confidence 0000 11112 23344789999999995 5556677777765 5766665 777774421 1234578999999
Q ss_pred CHHHHHHHHHHhhhcCC--CC---CcchHHHHHHHHHHhCCCcH
Q 037205 250 EYHHALELFSRHAFKRN--HP---DVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 250 ~~~ea~~Lf~~~a~~~~--~~---~~~~~~~~~~i~~~~~GlPL 288 (439)
+.++-.+++.+-+.... .. ..-.++....++..++|---
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 99999999988432211 11 11124566677777777643
No 14
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=8.8e-09 Score=112.42 Aligned_cols=292 Identities=15% Similarity=0.185 Sum_probs=173.1
Q ss_pred CcccccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------------------HH-HHHHHH
Q 037205 115 QLVGVESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR---------------------YL-LATKLI 171 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------f~-~~~~ll 171 (439)
.++||+.+++.|...+.. ......++.+.|.+|||||+|+++|...+.. |+ ..+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 379999999999998875 3344679999999999999999999877654 11 111111
Q ss_pred HHH-------------------h-----------------cCCC---CCC-----------cHHHHHHHh-ccCCceEEe
Q 037205 172 SNL-------------------L-----------------KDEN---AIP-----------GIDLNFRRL-SRMKVLIFF 200 (439)
Q Consensus 172 ~~l-------------------~-----------------~~~~---~~~-----------~~~~l~~~l-~~~~~LlVl 200 (439)
.++ . +..+ ++. ....+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 111 1 1000 100 011112222 346999999
Q ss_pred cCCCCHH-----HHHHHhcCCC--CC-CCCcEEEEEeCch--HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCc
Q 037205 201 YDVTCFS-----QLESLMGSLD--WL-TPVSRIILTTRNK--QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDV 270 (439)
Q Consensus 201 Ddv~~~~-----~~~~l~~~~~--~~-~~gs~IiiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 270 (439)
||+...+ -++.++.... .+ .+..-.+.|.+.. .+.........+.|.||+..+...|..........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--- 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--- 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---
Confidence 9994322 2444443332 00 0111222333322 12222234478999999999999998877632222
Q ss_pred chHHHHHHHHHHhCCCcHHHHHHHHhhcCC-------CHHHHHHHHHHHhcCCC-ccHHHHHHHhhcCCCHHhHHHHhcc
Q 037205 271 GYEKLSSNVMKYVQGVPLALKVLGCFLYKR-------EKEVWESAINKLQRILY-PSILEVLKISYDGLDNKEKNIFLGV 342 (439)
Q Consensus 271 ~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~Sy~~L~~~~k~~fl~l 342 (439)
...+..+.|+++..|+|+.+..+-..+... +...|..-...+...+. +.+...+..-.+.||...|+++...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 236778999999999999999998888652 33445544444333221 2355568889999999999999999
Q ss_pred cccccc---------cCCCch---hHHHHHHhhCCceEEcc--------CCeE---EecHHHHHHHHHHHhhhcCCCCCe
Q 037205 343 ACFFQV---------RIGFNL---EIGVSVLVDKSLIVISN--------NNKI---TMHDLLQELGRDIVSQESNDPGNH 399 (439)
Q Consensus 343 a~f~~~---------~~~~~~---~~~l~~L~~~sLi~~~~--------~~~~---~mHdlv~~~a~~i~~~e~~~~~~~ 399 (439)
||+.+. .....+ ....+.|.. ++|.... .... ..||++|+.|-....+.
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------- 389 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------- 389 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHHHHHHHhccCchh-------
Confidence 999875 111222 223344444 4444321 1112 57888888776554433
Q ss_pred eeccChhhHHHHHhhCcC
Q 037205 400 NWLWHHEDIYEVLTYNTA 417 (439)
Q Consensus 400 ~rl~~~~~~~~~l~~~~~ 417 (439)
.|--.|..+...|.++..
T Consensus 390 ~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 QRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 222455566666655543
No 15
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=4.2e-09 Score=92.36 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=77.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------------HH---------HHHHHHHHHhcCCCCC-CcHH-HHH-HHhcc
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------------YL---------LATKLISNLLKDENAI-PGID-LNF-RRLSR 193 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~---------~~~~ll~~l~~~~~~~-~~~~-~l~-~~l~~ 193 (439)
|++.|+|.+|+||||+++.++..... |. ....+...+....... .... .+. .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999999988765 11 0012222332222211 1111 111 22356
Q ss_pred CCceEEecCCCCHHH-------------HHHHhcCCCCCCCCcEEEEEeCchHH---HHhcCCCeEEEcCCCCHHHHHHH
Q 037205 194 MKVLIFFYDVTCFSQ-------------LESLMGSLDWLTPVSRIILTTRNKQV---LRNWGVSKIYEMEALEYHHALEL 257 (439)
Q Consensus 194 ~~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 257 (439)
++++||||++++... +..+... ...++.+++||||.... .........+++.+|++++..++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 899999999965432 2222222 12468999999997766 33334446899999999999998
Q ss_pred HHHhh
Q 037205 258 FSRHA 262 (439)
Q Consensus 258 f~~~a 262 (439)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87654
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.87 E-value=2.8e-08 Score=92.43 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=90.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH---
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF--- 206 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--- 206 (439)
..+.+.|||++|+|||+||+.+++.... |+..... ......+.+.+. +.-+|+|||++..
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------~~~~~~~~~~~~-~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------QYFSPAVLENLE-QQDLVCLDDLQAVIGN 106 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------hhhhHHHHhhcc-cCCEEEEeChhhhcCC
Confidence 3467899999999999999999988642 2211100 000111222222 3358999999753
Q ss_pred HHHH-HHhcCCCCC-CCCcEEEE-EeCc---------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHH
Q 037205 207 SQLE-SLMGSLDWL-TPVSRIIL-TTRN---------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEK 274 (439)
Q Consensus 207 ~~~~-~l~~~~~~~-~~gs~Iii-TTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 274 (439)
..|+ .+...+... ..|+.+|+ |+.. +.+...++....+++++++.++.++++.+.+....... .++
T Consensus 107 ~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l--~~~ 184 (229)
T PRK06893 107 EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL--SDE 184 (229)
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC--CHH
Confidence 2233 222222111 23555554 5543 34555555567899999999999999999886544222 267
Q ss_pred HHHHHHHHhCCCcHHHHHHHHh
Q 037205 275 LSSNVMKYVQGVPLALKVLGCF 296 (439)
Q Consensus 275 ~~~~i~~~~~GlPLal~~~g~~ 296 (439)
...-+++.+.|..-++..+-..
T Consensus 185 v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 185 VANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHhccCCHHHHHHHHHH
Confidence 7888888888777666544443
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.85 E-value=4.1e-08 Score=99.52 Aligned_cols=168 Identities=16% Similarity=0.248 Sum_probs=102.3
Q ss_pred CCcccccchHHH---HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCC----cHH
Q 037205 114 SQLVGVESRVEE---IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIP----GID 185 (439)
Q Consensus 114 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~----~~~ 185 (439)
.++||.+..+.. +.+++. ......+.|+|++|+||||||+.+++.... |+.. ........ ..+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l-------~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL-------SAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE-------ecccccHHHHHHHHH
Confidence 568998877666 777765 334567889999999999999999877543 2200 00000000 111
Q ss_pred HHHHH-hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCchHHH---HhcCCCeEEEcCCCCHHHHHHH
Q 037205 186 LNFRR-LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL--TTRNKQVL---RNWGVSKIYEMEALEYHHALEL 257 (439)
Q Consensus 186 ~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~l~~L~~~ea~~L 257 (439)
..... ..+++.+|++|+++.. .+.+.|+..+. .|..+++ ||.++... ........+.+.+++.++...+
T Consensus 83 ~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 83 EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159 (413)
T ss_pred HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence 11111 1347789999999754 45566665544 3444444 34444211 1112336789999999999999
Q ss_pred HHHhhhcCCCCC-cchHHHHHHHHHHhCCCcHHHHHH
Q 037205 258 FSRHAFKRNHPD-VGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 258 f~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
+.+.+....... .-..+....+++.|+|.|..+..+
T Consensus 160 L~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 160 LKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 988653211111 223567888999999998776443
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.80 E-value=8.4e-08 Score=88.98 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=99.5
Q ss_pred CCccc--ccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHH
Q 037205 114 SQLVG--VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGID 185 (439)
Q Consensus 114 ~~~vG--r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~ 185 (439)
.+|++ .+..++.+.+++. ....+.+.|+|.+|+|||+||+.+++.... |+....+.... .
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----------~ 82 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----------P 82 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH----------H
Confidence 44553 3446677777654 234568899999999999999999887642 11111111100 1
Q ss_pred HHHHHhccCCceEEecCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCchH---------HHHhcCCCeEEEcCCCCH
Q 037205 186 LNFRRLSRMKVLIFFYDVTCFS---Q-LESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEY 251 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~ 251 (439)
.+...+. +.-+|||||++... . .+.+...+.. ...+.++|+||+... +...+.....+++++++.
T Consensus 83 ~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 83 EVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD 161 (226)
T ss_pred HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH
Confidence 1112222 23489999996432 1 2333322211 123457888887432 222222246789999999
Q ss_pred HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHh
Q 037205 252 HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF 296 (439)
Q Consensus 252 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 296 (439)
++...++...+-..... -..+....+++.+.|+|..+..+-..
T Consensus 162 ~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 162 EEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999988765332222 12566788888899999887766444
No 19
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=6.3e-09 Score=101.16 Aligned_cols=253 Identities=18% Similarity=0.235 Sum_probs=167.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-------HH----------HHHHHHHHHhcCCC-CCCcHHHHHHHhccCCce
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-------YL----------LATKLISNLLKDEN-AIPGIDLNFRRLSRMKVL 197 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~----------~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~~L 197 (439)
..+.+.++|.|||||||++-++.. ... |+ +...+...+.-... .......+.....+++.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence 468899999999999999999888 433 22 11111111111111 112455677788899999
Q ss_pred EEecCCCCHH-HHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCCCCHH-HHHHHHHHhhhcCC---CCCcch
Q 037205 198 IFFYDVTCFS-QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYH-HALELFSRHAFKRN---HPDVGY 272 (439)
Q Consensus 198 lVlDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~---~~~~~~ 272 (439)
+|+||..... +...+...+....+.-.|+.|+|..... .....+.++.|+.. ++.++|...+.... ......
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~ 168 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDN 168 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCc
Confidence 9999996653 2333333333344566788999965432 23566788888876 78999887663322 222334
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHH----HhcC------CCccHHHHHHHhhcCCCHHhHHHHhcc
Q 037205 273 EKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINK----LQRI------LYPSILEVLKISYDGLDNKEKNIFLGV 342 (439)
Q Consensus 273 ~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~Sy~~L~~~~k~~fl~l 342 (439)
.....+|.+...|.|++|...++..+.....+-...++. +..- ........+..||.-|...++-.|..+
T Consensus 169 ~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rL 248 (414)
T COG3903 169 AAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRL 248 (414)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcch
Confidence 677899999999999999999999988766554444432 2221 124577889999999999999999999
Q ss_pred cccccc---------c-------CCCchhHHHHHHhhCCceEEcc---CCeEEecHHHHHHHHHHHhhh
Q 037205 343 ACFFQV---------R-------IGFNLEIGVSVLVDKSLIVISN---NNKITMHDLLQELGRDIVSQE 392 (439)
Q Consensus 343 a~f~~~---------~-------~~~~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~a~~i~~~e 392 (439)
+.|... + ..|.....+..|+++|++...+ .-+|+.-+-++.|+.....+.
T Consensus 249 a~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 249 AVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888765 1 2233445678899999998653 223666666666666655543
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=4e-07 Score=95.78 Aligned_cols=178 Identities=17% Similarity=0.156 Sum_probs=111.5
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--HHHHHHHHHhcCC-C---CC-
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--LATKLISNLLKDE-N---AI- 181 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--~~~~ll~~l~~~~-~---~~- 181 (439)
.++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+.. .. -.-.....+.... . .+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 679999999999999887332 2456679999999999999988876531 00 0000011111100 0 11
Q ss_pred ----CcHHHHHHHhc--------cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEEE
Q 037205 182 ----PGIDLNFRRLS--------RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYE 245 (439)
Q Consensus 182 ----~~~~~l~~~l~--------~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~ 245 (439)
..++.+++.+. ++.-++|||+++... .++.|+..+.......++|+||.+..-. .. ......++
T Consensus 95 Aas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~ 174 (830)
T PRK07003 95 AASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174 (830)
T ss_pred ccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEe
Confidence 12333333322 345588899997654 3666766655445677888877765432 22 12346899
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHH
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLG 294 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g 294 (439)
+..++.++..+.+.+.+....... ..+....|++.++|.. -|+.++-
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999988764433222 2566788999998865 4555543
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.71 E-value=1.6e-07 Score=85.25 Aligned_cols=174 Identities=18% Similarity=0.197 Sum_probs=99.2
Q ss_pred CCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHH---
Q 037205 113 KSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGID--- 185 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~--- 185 (439)
-.+|||.+.-+..+.-++.. ..+....+.+||+||+||||||..+++.... |. ... .+.++...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~--------~~s-g~~i~k~~dl~ 93 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK--------ITS-GPAIEKAGDLA 93 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE--------EEE-CCC--SCHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE--------ecc-chhhhhHHHHH
Confidence 47899999988887766543 2345778999999999999999999988763 10 001 11122112
Q ss_pred HHHHHhccCCceEEecCCCCH--HHHHHHhcCCCCC--------CCC-----------cEEEEEeCchHHHHhcC--CCe
Q 037205 186 LNFRRLSRMKVLIFFYDVTCF--SQLESLMGSLDWL--------TPV-----------SRIILTTRNKQVLRNWG--VSK 242 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~g-----------s~IiiTTR~~~v~~~~~--~~~ 242 (439)
.+...++ ++-+|.+|++... .+-+.|.+....+ +++ +-|=.|||...+...+. ..-
T Consensus 94 ~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 94 AILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI 172 (233)
T ss_dssp HHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred HHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence 2222333 4567888999643 3334444332211 222 23447888765554443 234
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhc
Q 037205 243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLY 298 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~ 298 (439)
..+++..+.+|-.++..+.+..-... -.++.+.+|++.+.|-|--..-+-...+
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~--i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNIE--IDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT-E--E-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55899999999999998877332222 2367899999999999976555444443
No 22
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.70 E-value=5e-08 Score=97.27 Aligned_cols=173 Identities=18% Similarity=0.293 Sum_probs=102.1
Q ss_pred CCCCCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK 176 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~ 176 (439)
....++.|++..+++|.+.+... -...+-+.|+|++|+|||+||+.+++.... |+ ....+.....+
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g 198 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIG 198 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhh
Confidence 34467899999999998876421 123456899999999999999999987654 32 11111111111
Q ss_pred CCCCCCcHHHHHHH-hccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHH--
Q 037205 177 DENAIPGIDLNFRR-LSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVL-- 235 (439)
Q Consensus 177 ~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~-- 235 (439)
.. ......+.+. -...+.+|+||+++... .+..++..+..+ ..+..||.||......
T Consensus 199 ~~--~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~ 276 (364)
T TIGR01242 199 EG--ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP 276 (364)
T ss_pred HH--HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence 00 0011112222 23456899999986431 123333222211 2456788888754322
Q ss_pred ---HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205 236 ---RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 236 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 288 (439)
........+.++.++.++..++|..++.+...... -....+++.+.|..-
T Consensus 277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~sg 329 (364)
T TIGR01242 277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGASG 329 (364)
T ss_pred hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCCH
Confidence 21234567899999999999999988754432221 114567777777643
No 23
>PRK04195 replication factor C large subunit; Provisional
Probab=98.67 E-value=4.2e-07 Score=94.00 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=103.1
Q ss_pred CCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-------HHHHHHHHHhcCCCCCC
Q 037205 113 KSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL-------LATKLISNLLKDENAIP 182 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-------~~~~ll~~l~~~~~~~~ 182 (439)
..+++|.+..++.+.+++.. .....+.+.|+|++|+||||+|+.+++.+.. ++ .....+..+......
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~-- 90 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAAT-- 90 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhc--
Confidence 36799999999999999864 2222678999999999999999999887642 10 000011111100000
Q ss_pred cHHHHHHHhc-cCCceEEecCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCchHH-HH-h-cCCCeEEEcCCCCHH
Q 037205 183 GIDLNFRRLS-RMKVLIFFYDVTCFS------QLESLMGSLDWLTPVSRIILTTRNKQV-LR-N-WGVSKIYEMEALEYH 252 (439)
Q Consensus 183 ~~~~l~~~l~-~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~-~-~~~~~~~~l~~L~~~ 252 (439)
...+. .++-+||+|+++... .+..+...+. ..+..||+|+.+..- .. . -.....+++++++.+
T Consensus 91 -----~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~ 163 (482)
T PRK04195 91 -----SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTR 163 (482)
T ss_pred -----cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHH
Confidence 00111 367799999997542 2444443333 234456666643321 11 1 123467899999999
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
+....+...+....... ..+....|++.++|..-.+.
T Consensus 164 ~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 164 SIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 99988887774433222 25678889999988766544
No 24
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.65 E-value=1.7e-07 Score=89.48 Aligned_cols=130 Identities=19% Similarity=0.357 Sum_probs=83.2
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH----------HHHHHHHHHhcC
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YL----------LATKLISNLLKD 177 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~----------~~~~ll~~l~~~ 177 (439)
...++||-+.-+..+.+ .+..+.+.+||++|+||||||+.+....+. |+ -.+.++.+
T Consensus 142 GQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~---- 212 (554)
T KOG2028|consen 142 GQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ---- 212 (554)
T ss_pred chhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH----
Confidence 33455555444433332 467888999999999999999999877654 32 01111111
Q ss_pred CCCCCcHHHHHHHhccCCceEEecCCC--CHHHHHHHhcCCCCCCCCcEEEE--EeCchHHH---HhcCCCeEEEcCCCC
Q 037205 178 ENAIPGIDLNFRRLSRMKVLIFFYDVT--CFSQLESLMGSLDWLTPVSRIIL--TTRNKQVL---RNWGVSKIYEMEALE 250 (439)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~l~~L~ 250 (439)
..-...+..++.+|.+|.|. +..|-+.+++.. -+|+-++| ||.|+..- .......++.+++|+
T Consensus 213 -------aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 213 -------AQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred -------HHHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 11122355788999999995 344555555554 36766664 88877541 222345788999999
Q ss_pred HHHHHHHHHH
Q 037205 251 YHHALELFSR 260 (439)
Q Consensus 251 ~~ea~~Lf~~ 260 (439)
.++...++.+
T Consensus 283 ~n~v~~iL~r 292 (554)
T KOG2028|consen 283 VNAVVTILMR 292 (554)
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 25
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=6.2e-08 Score=81.65 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=73.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh--H---HHHHHH-HHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCHHHHHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS--R---YLLATK-LISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQLES 211 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~--~---f~~~~~-ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 211 (439)
+++.|.|+.|+|||||+++++++.. . |+.... -...... .+..+.+.+....++.+++||++.....|..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD----PDLLEYFLELIKPGKKYIFIDEIQYLPDWED 78 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh----hhhHHHHHHhhccCCcEEEEehhhhhccHHH
Confidence 5789999999999999999998765 2 220000 0000000 0022333444444788999999988777766
Q ss_pred HhcCCCCCCCCcEEEEEeCchHHHHhc------CCCeEEEcCCCCHHHH
Q 037205 212 LMGSLDWLTPVSRIILTTRNKQVLRNW------GVSKIYEMEALEYHHA 254 (439)
Q Consensus 212 l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~ea 254 (439)
....+....+..+|++|+.+......- |....+++.||+..|-
T Consensus 79 ~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 79 ALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 665554445678999999987766331 2335688999998773
No 26
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.64 E-value=7.4e-07 Score=94.50 Aligned_cols=225 Identities=14% Similarity=0.095 Sum_probs=124.0
Q ss_pred CCCCCCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------H----H-------
Q 037205 109 PRDNKSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR---------Y----L------- 165 (439)
Q Consensus 109 p~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f----~------- 165 (439)
|...+..+.||+.++++|...|.. ++....++.|+|++|.|||++++.|.+.+.. | +
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 336678999999999999998864 2333456789999999999999999887643 1 1
Q ss_pred ---HHHHHHHHHhcCCC--CCC---cHHHHHHHhc---cCCceEEecCCCCHH-----HHHHHhcCCCCCCCCcEEEE--
Q 037205 166 ---LATKLISNLLKDEN--AIP---GIDLNFRRLS---RMKVLIFFYDVTCFS-----QLESLMGSLDWLTPVSRIIL-- 227 (439)
Q Consensus 166 ---~~~~ll~~l~~~~~--~~~---~~~~l~~~l~---~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~Iii-- 227 (439)
+...+..++.+..+ ... ....+...+. ....+||||+++... .+-.|..... ..+++|++
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIG 907 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEE
Confidence 44455555544333 222 2233333331 123589999997432 1222222111 23555543
Q ss_pred EeCc--------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC--CCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205 228 TTRN--------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRN--HPDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297 (439)
Q Consensus 228 TTR~--------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 297 (439)
+|.+ +.+...++ ...+..++.+.++-.+++..++-... ..+...+-+++.++...|-.-.||.++-.+.
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 3322 12222222 22466799999999999998874321 1122223333444444455666776665554
Q ss_pred cC-----CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccc
Q 037205 298 YK-----REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVA 343 (439)
Q Consensus 298 ~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la 343 (439)
.. -..+.-..+...+... .+.-....||.+.|.+++.+.
T Consensus 987 EikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 32 1233333333333211 122334567777776555443
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.2e-06 Score=87.14 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=107.9
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH--------HHHHHHHHHhcC----
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL--------LATKLISNLLKD---- 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~--------~~~~ll~~l~~~---- 177 (439)
..+++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+++.+.. +. ...++.......
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 367999999999999888633 22456789999999999999998877531 00 011111110000
Q ss_pred CC-CCCcHHHHHH---Hhc-----cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEE
Q 037205 178 EN-AIPGIDLNFR---RLS-----RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIY 244 (439)
Q Consensus 178 ~~-~~~~~~~l~~---~l~-----~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~ 244 (439)
.. .....+.+++ .+. +++-++|+|+++... .++.|+..+.......++|++|.+. .+.... +....+
T Consensus 94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~ 173 (363)
T PRK14961 94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF 173 (363)
T ss_pred cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEE
Confidence 00 0012222322 222 345689999997654 3566666655445566777766544 333222 234688
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
++.+++.++..+.+...+...+... ..+.+..+++.++|.|-.+
T Consensus 174 ~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 174 KLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 9999999999988887664433211 2456788999999988643
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.62 E-value=2.6e-07 Score=90.47 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=101.5
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCcHHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPGIDLNFRR 190 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~~~~l~~~ 190 (439)
.+++|.+..++.|..++.. +..+.+.++|++|+||||+|..+++.+.. |- ..... ...+....+.++..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~------~~~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYK------EAVLELNASDDRGIDVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCc------cceeeecccccccHHHHHHH
Confidence 6789999888888887763 33455779999999999999998877521 10 00000 00011122222222
Q ss_pred h-----------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHHHHH
Q 037205 191 L-----------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHAL 255 (439)
Q Consensus 191 l-----------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~ 255 (439)
+ .++.-+++||+++... ....|...+....+.+++|+++... .+.... .....+++++++.++..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 1 1345689999997542 3344444443345567777776543 222211 12357899999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
..+...+-..+..-+ .+....+++.++|-.-.+
T Consensus 165 ~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 165 GRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 988887744332221 456788899998876443
No 29
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2.2e-06 Score=89.36 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=109.6
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcC-CCCC---
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKD-ENAI--- 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~-~~~~--- 181 (439)
..++||.+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+.. +. -.......+... ..++
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 3679999999999999887332 2467789999999999999998876531 00 000000111100 0010
Q ss_pred -----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEE
Q 037205 182 -----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIY 244 (439)
Q Consensus 182 -----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~ 244 (439)
..++.+++.+ .++.-++|+|+++.. .....|+..+.....+.++|++|.+..-. .. ......+
T Consensus 93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~f 172 (702)
T PRK14960 93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQF 172 (702)
T ss_pred cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhhee
Confidence 1333333332 245668999999754 34566665555444567788777654322 11 2344788
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
++.+++.++..+.+.+.+-...... ..+....|++.++|.+-.+
T Consensus 173 eFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 173 TLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 9999999999998887764433222 2566788999999977543
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.5e-06 Score=89.70 Aligned_cols=174 Identities=14% Similarity=0.075 Sum_probs=107.8
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHHHHHhc------C
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLISNLLK------D 177 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll~~l~~------~ 177 (439)
.+++|-+..++.|...+..+. -...+.++|++|+||||+|+.+++.+.. +. ....+...... .
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 578999998888988887432 2346689999999999999998877631 00 00000000000 0
Q ss_pred CC--CCCcHHHHHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEc
Q 037205 178 EN--AIPGIDLNFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEM 246 (439)
Q Consensus 178 ~~--~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l 246 (439)
.. .++.+..+...+ .+++-++|+|+++.. ..++.|+..+....+.+.+|++|... .+.... .....+++
T Consensus 93 ~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f 172 (504)
T PRK14963 93 ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRF 172 (504)
T ss_pred cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEe
Confidence 00 011222233322 245668999999754 44667766665444555666555433 332222 23468999
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 247 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 247 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
.+++.++..+.+.+.+-..+... ..+.+..|++.++|.+--+
T Consensus 173 ~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 173 RRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 99999999999988775443222 2567888999999988644
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.59 E-value=9.6e-07 Score=87.00 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=104.0
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHH----HHHhcCCC--
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLI----SNLLKDEN-- 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll----~~l~~~~~-- 179 (439)
.+++|++..++.+.+++.. +..+.+.++|++|+||||+|+.+++.+.. ++....+. ..+.....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchh
Confidence 6789999999999998863 34456889999999999999998877531 11111111 11100000
Q ss_pred ---------CCCcHHHHHHHh---------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc
Q 037205 180 ---------AIPGIDLNFRRL---------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW 238 (439)
Q Consensus 180 ---------~~~~~~~l~~~l---------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~ 238 (439)
.......+++.+ ...+-+||+||++... ....|...+......+++|+||.+.. +....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 001122222211 1334589999996442 23334433333345677887775432 22222
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 239 -GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 239 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
.....+++.+++.++....+...+...... -..+.+..+++.++|.+-.+.
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 233578899999999999888876433322 225678888899988766544
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.58 E-value=2.6e-06 Score=83.19 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=102.0
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhcCCC-CCC-cHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLKDEN-AIP-GIDLNFR 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~~~~-~~~-~~~~l~~ 189 (439)
.+++|++..++.+..++.. ...+.+.++|.+|+||||+|+.+++.... |-. ..-.+..... ... ..+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~---~~i~~~~~~~~~~~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRE---NFLELNASDERGIDVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc---ceEEeccccccchHHHHHHHHH
Confidence 5689999999999998863 33445799999999999999999887532 100 0000000000 000 0112222
Q ss_pred Hhc------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHH
Q 037205 190 RLS------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFS 259 (439)
Q Consensus 190 ~l~------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 259 (439)
... ..+-++++|+++.. +....|...+....+.+++|+++.... +.... .....+++++++.++....+.
T Consensus 92 ~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 92 FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLR 171 (319)
T ss_pred HHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHH
Confidence 211 23558889998643 233445444444445677777764321 11111 123468899999999988888
Q ss_pred HhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 260 RHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
..+-.....- ..+.+..+++.++|.+.-+
T Consensus 172 ~~~~~~~~~i--~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 172 YIAENEGIEI--TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 8774433221 2567888899999987663
No 33
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.56 E-value=7.9e-07 Score=82.64 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=93.7
Q ss_pred CCcc-cccchH-HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHH
Q 037205 114 SQLV-GVESRV-EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGID 185 (439)
Q Consensus 114 ~~~v-Gr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~ 185 (439)
++|+ |..... ..+.++.. .....+.+.|+|.+|+|||+||+.+++.... |+....+. .
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~-------------~ 83 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL-------------L 83 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH-------------H
Confidence 4455 554433 34444333 2234567889999999999999999887532 11111110 0
Q ss_pred HHHHHhccCCceEEecCCCCH--HHHHHHhcCCCCC-CCCc-EEEEEeCchHHHH--------hcCCCeEEEcCCCCHHH
Q 037205 186 LNFRRLSRMKVLIFFYDVTCF--SQLESLMGSLDWL-TPVS-RIILTTRNKQVLR--------NWGVSKIYEMEALEYHH 253 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~e 253 (439)
.+ . .....-+||+||++.. ...+.|...+... ..+. .+|+|++...... .+.....+++++|+.++
T Consensus 84 ~~-~-~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 84 AF-D-FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred HH-h-hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 00 1 1223457889999643 2222332222111 1333 4666766432211 22224688999999988
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205 254 ALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297 (439)
Q Consensus 254 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 297 (439)
-..++.+.+-..... -.++....+++.+.|++..+..+-..+
T Consensus 162 ~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 162 KIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 777776654222221 225678888888999999887766654
No 34
>PRK09087 hypothetical protein; Validated
Probab=98.54 E-value=1.7e-06 Score=80.20 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=85.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH----HHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF----SQLES 211 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~ 211 (439)
.+.+.|||.+|+|||+|++.+++.... |+....+.. .....+.+ -+|++||+... +.+-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~--~~l~iDDi~~~~~~~~~lf~ 108 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS-------------DAANAAAE--GPVLIEDIDAGGFDETGLFH 108 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch-------------HHHHhhhc--CeEEEECCCCCCCCHHHHHH
Confidence 466899999999999999988766432 221111100 01111111 37888999532 22322
Q ss_pred HhcCCCCCCCCcEEEEEeCc---------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHH
Q 037205 212 LMGSLDWLTPVSRIILTTRN---------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKY 282 (439)
Q Consensus 212 l~~~~~~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~ 282 (439)
+..... ..|..||+|++. +.+...+.....+++++++.++-.+++.+.+-..... -.++...-|++.
T Consensus 109 l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~--l~~ev~~~La~~ 184 (226)
T PRK09087 109 LINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLY--VDPHVVYYLVSR 184 (226)
T ss_pred HHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence 222221 346778998873 2333444556789999999999999999887443221 226778888888
Q ss_pred hCCCcHHHHHH
Q 037205 283 VQGVPLALKVL 293 (439)
Q Consensus 283 ~~GlPLal~~~ 293 (439)
+.|..-++..+
T Consensus 185 ~~r~~~~l~~~ 195 (226)
T PRK09087 185 MERSLFAAQTI 195 (226)
T ss_pred hhhhHHHHHHH
Confidence 88877776643
No 35
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.5e-06 Score=91.20 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC-------
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE------- 178 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~------- 178 (439)
..++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+.- .. -.......+....
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3679999999999999987422 2457889999999999999998776421 00 0000011111100
Q ss_pred --CCCCcHHHHHHHhc--------cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEE
Q 037205 179 --NAIPGIDLNFRRLS--------RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIY 244 (439)
Q Consensus 179 --~~~~~~~~l~~~l~--------~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~ 244 (439)
.....++.+++.+. +++-++|+|+++... ....|+..+......+++|++|.+.. +... .+....+
T Consensus 94 daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f 173 (709)
T PRK08691 94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQF 173 (709)
T ss_pred eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhh
Confidence 00113333433332 456689999997543 34455555443335567776665442 2212 1223567
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
.+.+++.++....+.+.+-...... ..+.+..|++.++|.+.-+.
T Consensus 174 ~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 174 VLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHH
Confidence 8889999999998887764433222 25668899999998885443
No 36
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=5.7e-07 Score=96.29 Aligned_cols=166 Identities=16% Similarity=0.252 Sum_probs=96.9
Q ss_pred CCcccccchHH---HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCC-cHHHHH
Q 037205 114 SQLVGVESRVE---EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIP-GIDLNF 188 (439)
Q Consensus 114 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~-~~~~l~ 188 (439)
.+|+|.+..+. .+.+.+. .+....+.++|++|+||||||+.+++.... |+........+ .++. ......
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i----~dir~~i~~a~ 101 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV----KDLRAEVDRAK 101 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh----HHHHHHHHHHH
Confidence 56899888774 4555554 345567889999999999999999987654 33111111000 0000 111121
Q ss_pred HHh--ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEE--EeCchHH--HHh-cCCCeEEEcCCCCHHHHHHHHH
Q 037205 189 RRL--SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIIL--TTRNKQV--LRN-WGVSKIYEMEALEYHHALELFS 259 (439)
Q Consensus 189 ~~l--~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v--~~~-~~~~~~~~l~~L~~~ea~~Lf~ 259 (439)
..+ .+++.+|+|||++. ..+.+.|..... .|+.+++ ||.++.. ... ......+.+++|+.++...++.
T Consensus 102 ~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 102 ERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred HHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHH
Confidence 222 24567999999964 445666665443 3555555 3444321 111 1124578999999999999988
Q ss_pred Hhhhc-----CCCCCcchHHHHHHHHHHhCCCcH
Q 037205 260 RHAFK-----RNHPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 260 ~~a~~-----~~~~~~~~~~~~~~i~~~~~GlPL 288 (439)
+.+-. ......-..+....+++.+.|..-
T Consensus 179 ~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 179 RALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 76531 011111235667788888887644
No 37
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.7e-06 Score=87.06 Aligned_cols=179 Identities=18% Similarity=0.128 Sum_probs=105.1
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H--H----HHHHHHHHHhc-CCC---C-
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y--L----LATKLISNLLK-DEN---A- 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f--~----~~~~ll~~l~~-~~~---~- 180 (439)
.++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+.. + . ... ....+.. ... .
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~-~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR-ACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH-HHHHHhcCCCCccEEE
Confidence 679999988888888776321 2356789999999999999998876531 0 0 000 0000000 000 0
Q ss_pred ----CCcHHHHH---HHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEE
Q 037205 181 ----IPGIDLNF---RRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIY 244 (439)
Q Consensus 181 ----~~~~~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 244 (439)
..+.+.++ +.. .+++-++|+|+++.. ...+.|+..+........+|++|.+ ..+.... .....+
T Consensus 92 ~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv 171 (472)
T PRK14962 92 DAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVI 171 (472)
T ss_pred eCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEE
Confidence 01223222 222 235569999999754 3456666655443344454544444 3332222 234688
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhC-CCcHHHHHHHHh
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ-GVPLALKVLGCF 296 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~-GlPLal~~~g~~ 296 (439)
++.+++.++....+.+.+......- ..+....|++.++ +++.|+..+-..
T Consensus 172 ~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 172 EFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999888887764333221 2556778888775 456777766553
No 38
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.51 E-value=6e-07 Score=90.13 Aligned_cols=172 Identities=17% Similarity=0.284 Sum_probs=100.1
Q ss_pred CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205 111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK 176 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~ 176 (439)
....++.|++..++++.+.+.. +-...+-|.++|++|+|||++|+.+++.... |+ ....+.....+
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g 207 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG 207 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence 3345688999999999986632 1134567899999999999999999987654 32 22222221111
Q ss_pred CCCCCCcHHHHHHH-hccCCceEEecCCCCH-------------HH---HHHHhcCCCCC--CCCcEEEEEeCchHHHHh
Q 037205 177 DENAIPGIDLNFRR-LSRMKVLIFFYDVTCF-------------SQ---LESLMGSLDWL--TPVSRIILTTRNKQVLRN 237 (439)
Q Consensus 177 ~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~-------------~~---~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~ 237 (439)
.. ......+... -...+.+|+||+++.. +. +..++.....+ ..+..||.||........
T Consensus 208 ~~--~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~ 285 (389)
T PRK03992 208 EG--ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDP 285 (389)
T ss_pred ch--HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCH
Confidence 10 0011112222 2346789999999653 11 22333222221 234567777765433222
Q ss_pred -----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 238 -----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 238 -----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
...+..+.++.++.++-.++|..+..+..... . .....++..+.|.-
T Consensus 286 allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~s 337 (389)
T PRK03992 286 AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGAS 337 (389)
T ss_pred HHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCCC
Confidence 12456789999999999999988774332221 1 11455666776654
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.4e-06 Score=86.47 Aligned_cols=174 Identities=14% Similarity=0.089 Sum_probs=106.7
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H---H------HHHHHHHHHhcCCCCC
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y---L------LATKLISNLLKDENAI 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f---~------~~~~ll~~l~~~~~~~ 181 (439)
..++||-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+.. . . ....+..........+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 3679999999999998887332 1346789999999999999999876531 0 0 1111111111000011
Q ss_pred C-----cHHHHH---HHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-CCCeEE
Q 037205 182 P-----GIDLNF---RRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIY 244 (439)
Q Consensus 182 ~-----~~~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~ 244 (439)
+ +++.++ +.+ .++.-++|+|+++.. +.+++|+..+........+|++| ....+.... .....|
T Consensus 96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~ 175 (484)
T PRK14956 96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDF 175 (484)
T ss_pred chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhee
Confidence 1 222222 222 345668999999744 45777776665433455555444 434443332 234679
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
.+.+++.++..+.+.+.+-..+.. -..+....|++.++|.+.-
T Consensus 176 ~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 176 IFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHH
Confidence 999999999988888776433322 2256788899999998854
No 40
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.46 E-value=7.3e-06 Score=81.43 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=108.4
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHhcC----
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLLKD---- 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~~~---- 177 (439)
-..++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+...+.. +. ....+.......
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 3678999999999999886322 2457789999999999999988776521 00 000110000000
Q ss_pred -CCCCCc---HHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEE
Q 037205 178 -ENAIPG---IDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIY 244 (439)
Q Consensus 178 -~~~~~~---~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~ 244 (439)
...... ...+.+.+. +++-++|+|+++.. .....+...+....+.+.+|++|.+.. +.... .....+
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 171 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 171 (355)
T ss_pred eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEE
Confidence 000011 222333222 34558889998654 445566655544445667677765544 22222 234578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG 294 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 294 (439)
++.+++.++..+.+...+-...... ..+.+..+++.++|.|..+....
T Consensus 172 ~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 8999999999988887764333222 24678889999999987654443
No 41
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.44 E-value=2.4e-06 Score=78.84 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=86.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV 203 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 203 (439)
....+.|||..|+|||.|.+++++.... |+ ....+...+.. .....++..++ .-=+|++||+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~-----~~~~~~~~~~~-~~DlL~iDDi 106 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD-----GEIEEFKDRLR-SADLLIIDDI 106 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT-----TSHHHHHHHHC-TSSEEEEETG
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc-----ccchhhhhhhh-cCCEEEEecc
Confidence 3556889999999999999999988654 22 22233333322 23445556666 3456778999
Q ss_pred CCH---HHH-HHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037205 204 TCF---SQL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPD 269 (439)
Q Consensus 204 ~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 269 (439)
+.. ..+ +.+...+.. ...|.+||+|++.. .+...+...-.+++.+++.++-.+++.+.+-.....-
T Consensus 107 ~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l 186 (219)
T PF00308_consen 107 QFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIEL 186 (219)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S
T ss_pred hhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 542 212 122211111 13467899999633 2233334557899999999999999998885443322
Q ss_pred cchHHHHHHHHHHhCCCcHHHHHH
Q 037205 270 VGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 270 ~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
.++.+.-+++.+.+..-.|.-+
T Consensus 187 --~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 187 --PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp ---HHHHHHHHHHTTSSHHHHHHH
T ss_pred --cHHHHHHHHHhhcCCHHHHHHH
Confidence 2566677777766655554433
No 42
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.8e-05 Score=81.82 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=107.8
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----------HH--HHHHHHHHHhcCC-C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----------YL--LATKLISNLLKDE-N 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~--~~~~ll~~l~~~~-~ 179 (439)
..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+-- .- -.-.....+.... .
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 3679999988889998887432 2456789999999999999998665420 00 0000011111100 0
Q ss_pred ---CC-----CcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cC
Q 037205 180 ---AI-----PGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WG 239 (439)
Q Consensus 180 ---~~-----~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~ 239 (439)
.+ ..++.+++.+. ++.-++|||+++.. ...+.|+..+.......++|++|.+ ..+... ..
T Consensus 94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence 11 13444444432 34458899999754 4566777666544455666655543 333322 23
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+--+.
T Consensus 174 Rc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 174 RCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 357899999999999998887764433222 24567888999998775443
No 43
>PRK05642 DNA replication initiation factor; Validated
Probab=98.41 E-value=8e-06 Score=76.23 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=86.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH---H
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF---S 207 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~ 207 (439)
.+.+.|||.+|+|||.|++.+++.... |+...++... ...+.+.+.+-. +||+||+... .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----------~~~~~~~~~~~d-~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----------GPELLDNLEQYE-LVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----------hHHHHHhhhhCC-EEEEechhhhcCCh
Confidence 367889999999999999999876542 3322222211 122333343332 6788999522 2
Q ss_pred HHH-HHhcCCCC-CCCCcEEEEEeCchHH---------HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHH
Q 037205 208 QLE-SLMGSLDW-LTPVSRIILTTRNKQV---------LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLS 276 (439)
Q Consensus 208 ~~~-~l~~~~~~-~~~gs~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 276 (439)
.++ .|...+.. ...|..+|+||+.... ...+.....+++.+++.++-.+++..++....... .++..
T Consensus 114 ~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l--~~ev~ 191 (234)
T PRK05642 114 DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL--TDEVG 191 (234)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHH
Confidence 222 23322221 1346788888874322 12223346789999999999999986664432211 25677
Q ss_pred HHHHHHhCCCcHHHHHHHH
Q 037205 277 SNVMKYVQGVPLALKVLGC 295 (439)
Q Consensus 277 ~~i~~~~~GlPLal~~~g~ 295 (439)
.-+++.+.|-.-.+..+-.
T Consensus 192 ~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 192 HFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHhcCCCHHHHHHHHH
Confidence 7788877777665544433
No 44
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=7.8e-06 Score=76.26 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=93.3
Q ss_pred CCCcccccc-hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHH
Q 037205 113 KSQLVGVES-RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGID 185 (439)
Q Consensus 113 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~ 185 (439)
.++|++... .+..+..+.. ......+.|+|.+|+|||+|+..+++.... |+...+... ...
T Consensus 18 f~~f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----------~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----------RLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----------hHH
Confidence 355665543 3333333332 122345999999999999999999887543 211111110 011
Q ss_pred HHHHHhccCCceEEecCCCCHH---HH-HHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCH
Q 037205 186 LNFRRLSRMKVLIFFYDVTCFS---QL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEY 251 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~ 251 (439)
...+.+ ...-+||+||+.... .+ ..+...+.. ...|..||+||+.. .+...+.....+++++++.
T Consensus 86 ~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~ 164 (233)
T PRK08727 86 DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD 164 (233)
T ss_pred HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH
Confidence 111222 234589999996321 11 223222211 12466799999843 2223333456889999999
Q ss_pred HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 252 HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 252 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
++-.+++.+.+...... -..+...-+++.+.|-.-++
T Consensus 165 e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 165 VARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 99999999877543322 22566778888887665554
No 45
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4e-06 Score=87.24 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HH-----HHHHHHHHHhcCC--
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-------YL-----LATKLISNLLKDE-- 178 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~-----~~~~ll~~l~~~~-- 178 (439)
..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+.- -+ -.-.....+....
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3679999999999999887332 2456789999999999999998776521 00 0000011111000
Q ss_pred C--CC-----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-chHHHHhc-C
Q 037205 179 N--AI-----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-G 239 (439)
Q Consensus 179 ~--~~-----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~ 239 (439)
+ .+ ..++.+++.+ .++.-++|+|+++.. ...+.|+..+..-..+.++|++|. ...+.... .
T Consensus 94 DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 94 DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 0 11 1233333332 245568999999754 457777777665455666665554 44443332 2
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
....+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|.-.
T Consensus 174 RCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 174 RCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred HHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 346789999999999998887764332221 2455688899999998643
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4e-06 Score=90.01 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHh-----cC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLL-----KD 177 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~-----~~ 177 (439)
.++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+.. .. ....+..... -.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 679999999999998886321 2345689999999999999999877631 00 0001100000 00
Q ss_pred CCCCCcHHHHH---HHh-----ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cCCCeEEE
Q 037205 178 ENAIPGIDLNF---RRL-----SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIYE 245 (439)
Q Consensus 178 ~~~~~~~~~l~---~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~ 245 (439)
......++.++ ..+ .++.-++|||+++. ....+.|+..+.......++|++|.+ ..+... ......|+
T Consensus 95 Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~ 174 (944)
T PRK14949 95 AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 (944)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEe
Confidence 00001222222 222 34667999999964 44567777666554556677665554 444333 22347899
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL 293 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 293 (439)
+.+|+.++....+.+.+-..... -..+.+..|++.++|.|- |+.++
T Consensus 175 fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 175 LKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999888766332221 225678889999999885 44443
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=8.4e-07 Score=75.39 Aligned_cols=115 Identities=26% Similarity=0.291 Sum_probs=65.0
Q ss_pred ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC-CC-CcHHHHH
Q 037205 117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN-AI-PGIDLNF 188 (439)
Q Consensus 117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~-~~-~~~~~l~ 188 (439)
+|++..+..+...+.. +..+.+.|+|.+|+||||||+.+++.... ++.............. .. .......
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 4788888899888763 24567889999999999999999988632 1100000000000000 00 0001112
Q ss_pred HHhccCCceEEecCCCCH-----HHHHHHhcCCCCC---CCCcEEEEEeCchH
Q 037205 189 RRLSRMKVLIFFYDVTCF-----SQLESLMGSLDWL---TPVSRIILTTRNKQ 233 (439)
Q Consensus 189 ~~l~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTTR~~~ 233 (439)
.....++.+|++||++.. ..+..+....... ..+..||+||....
T Consensus 79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 223456789999999853 2233333333221 35778888888543
No 48
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=7e-06 Score=84.54 Aligned_cols=175 Identities=17% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHHhcC
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNLLKD 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l~~~ 177 (439)
..+++|-+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+-. +. ....+.......
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 367899999999988877632 22457889999999999999999877521 00 001110000000
Q ss_pred CCCC-----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE-EeCchHHHHhc-CC
Q 037205 178 ENAI-----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL-TTRNKQVLRNW-GV 240 (439)
Q Consensus 178 ~~~~-----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~-~~ 240 (439)
...+ ..++.++..+ .+++-++|+|+++.. ..++.|+..+....+.+.+|+ ||+...+.... ..
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR 178 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR 178 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc
Confidence 0000 1233333322 245678999999764 446777766654445666654 55554554433 23
Q ss_pred CeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 241 SKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 241 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
...+++.+++.++....+.+.+-...... ..+....|++.++|.+--+
T Consensus 179 c~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 179 CQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 46789999999999999988875433222 2456778899998876443
No 49
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=4.9e-06 Score=84.97 Aligned_cols=179 Identities=14% Similarity=0.201 Sum_probs=103.6
Q ss_pred CCcccccch--HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESR--VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~ 179 (439)
..++|.... ......+..........+.|+|..|+|||+|++++++.+.. |+ +...+...+....
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~- 194 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH- 194 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-
Confidence 345576443 22333333222223456889999999999999999986542 33 2233333322110
Q ss_pred CCCcHHHHHHHhccCCceEEecCCCCH----HHHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEE
Q 037205 180 AIPGIDLNFRRLSRMKVLIFFYDVTCF----SQLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYE 245 (439)
Q Consensus 180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~ 245 (439)
...+.+++.++ ..-+||+||+... ...+.|...+.. ...|..||+|+... .+...+...-...
T Consensus 195 --~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~ 271 (450)
T PRK14087 195 --KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIA 271 (450)
T ss_pred --hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceec
Confidence 12233444444 3458888999532 112333222211 13455788887632 2222333456788
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHh
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCF 296 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 296 (439)
+++++.++-.+++.+.+-.......-.++.+.-|++.+.|.|-.+.-+...
T Consensus 272 L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 272 IQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred cCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 999999999999998874322111233678899999999999887655543
No 50
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.35 E-value=1.3e-05 Score=74.79 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=92.9
Q ss_pred Ccccccc-hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHH
Q 037205 115 QLVGVES-RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLN 187 (439)
Q Consensus 115 ~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l 187 (439)
.++|-.. .+..+.++.. ....+.+.|+|++|+|||+|++.+++.... |+....... ....+
T Consensus 24 f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------~~~~~ 91 (235)
T PRK08084 24 FYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------FVPEV 91 (235)
T ss_pred cccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----------hhHHH
Confidence 3346322 3344444433 223467899999999999999998887542 221111000 01112
Q ss_pred HHHhccCCceEEecCCCCH---HHHH-HHhcCCCC-CCCC-cEEEEEeCch---------HHHHhcCCCeEEEcCCCCHH
Q 037205 188 FRRLSRMKVLIFFYDVTCF---SQLE-SLMGSLDW-LTPV-SRIILTTRNK---------QVLRNWGVSKIYEMEALEYH 252 (439)
Q Consensus 188 ~~~l~~~~~LlVlDdv~~~---~~~~-~l~~~~~~-~~~g-s~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ 252 (439)
.+.+.. --+|++||+... .+|+ .+...+.. ...| .++|+||+.+ .+...+....++++++++.+
T Consensus 92 ~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~ 170 (235)
T PRK08084 92 LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDE 170 (235)
T ss_pred HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHH
Confidence 222222 247889999542 2222 11111111 1123 4789999854 22333445578999999999
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205 253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG 294 (439)
Q Consensus 253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 294 (439)
+-.+++.+.+...... -.++...-+++.+.|..-++..+-
T Consensus 171 ~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 171 EKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999988766433221 226777888888887766554433
No 51
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=3.8e-05 Score=76.26 Aligned_cols=175 Identities=13% Similarity=0.079 Sum_probs=107.2
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------H---------H----HHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------Y---------L----LATK 169 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f---------~----~~~~ 169 (439)
....+++|-+...+.|.+.+..+. -...+.++|+.|+||+|+|..+.+.+-- . - ..+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 345679999999999998887432 2446889999999999999987765420 0 0 0000
Q ss_pred HHHHH-------hc---CC-----CCCCcHHHHHHH---hc-----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcE
Q 037205 170 LISNL-------LK---DE-----NAIPGIDLNFRR---LS-----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSR 224 (439)
Q Consensus 170 ll~~l-------~~---~~-----~~~~~~~~l~~~---l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ 224 (439)
+.... .. .. ..+ .++.+++. +. +.+.++|+|+++. ......|+..+.....++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I-~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVI-TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccc-cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 00000 00 00 001 23334332 22 4567889999964 3445566655544445667
Q ss_pred EEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 225 IILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 225 IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
+|++|.+.. +.... .....+.+.+++.++..+++..... ... ......++..++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DLP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 777777653 33222 2356889999999999999987541 111 222367899999999865554
No 52
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=6.7e-06 Score=85.49 Aligned_cols=180 Identities=18% Similarity=0.140 Sum_probs=106.6
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHhcC----
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLLKD---- 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~~~---- 177 (439)
..+++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+++.+.. |. ....+.......
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 367999999999999988632 22467889999999999999998877531 11 111111100000
Q ss_pred -CCCCCcHHHHHHH---hc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh-cCCCeEE
Q 037205 178 -ENAIPGIDLNFRR---LS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN-WGVSKIY 244 (439)
Q Consensus 178 -~~~~~~~~~l~~~---l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~ 244 (439)
.....+++.++.. +. +++-++|+|+++.. .....|+..+......+.+|++| ....+... ......+
T Consensus 94 daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~i 173 (605)
T PRK05896 94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY 173 (605)
T ss_pred ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhc
Confidence 0000122333322 22 23447999999653 44556665544333455565555 43333322 2234678
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC 295 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 295 (439)
++.+++.++....+...+-..+..- ..+.+..+++.++|.+- |+..+-.
T Consensus 174 eF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 174 NFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999988887664333211 14567889999999654 5544443
No 53
>PTZ00202 tuzin; Provisional
Probab=98.33 E-value=2.9e-05 Score=77.06 Aligned_cols=195 Identities=12% Similarity=0.139 Sum_probs=109.4
Q ss_pred HHHHHHHHHh-------------ccccccccCCcc--hhhHHHHHHHhhhhcccccc---cCCCCCCCCcccccchHHHH
Q 037205 65 TWRKGLREAV-------------GLSGFHYRSIRP--ESELINEVVNHILKRLLEEV---FRPRDNKSQLVGVESRVEEI 126 (439)
Q Consensus 65 ~W~~aL~~~~-------------~~~g~~~~~~~~--e~~~i~~iv~~i~~~l~~~~---~~p~~~~~~~vGr~~~~~~l 126 (439)
.||-+|++-+ ...||.+.+... .+-...--++...+.+++.. .+-......|+||+.++..|
T Consensus 195 d~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~L 274 (550)
T PTZ00202 195 DFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWV 274 (550)
T ss_pred hhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHH
Confidence 6777776533 334555544332 22234444555555554422 11115678999999999999
Q ss_pred HhhhccCC-CCeeEEEEecCCCChhHHHHHHHHhHHhH---HH-------HHHHHHHHHhcCCCCC--CcHHHHHHHh--
Q 037205 127 ESLLSVES-KDVYALGIWGIGGIGKTTIARATFDKISR---YL-------LATKLISNLLKDENAI--PGIDLNFRRL-- 191 (439)
Q Consensus 127 ~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~-------~~~~ll~~l~~~~~~~--~~~~~l~~~l-- 191 (439)
...|...+ ...+++.|.|++|+|||||++.+...... |+ +...++..+.-..... +....+.+.+
T Consensus 275 r~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~ 354 (550)
T PTZ00202 275 RQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALGVPNVEACGDLLDFISEACRR 354 (550)
T ss_pred HHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 99997433 33569999999999999999998876654 11 5556666665432211 1333333322
Q ss_pred ---c-cCCceEEec--CCCCHHH-HHHHhcCCCCCCCCcEEEEEeCchHHHHhc---CCCeEEEcCCCCHHHHHHHHHH
Q 037205 192 ---S-RMKVLIFFY--DVTCFSQ-LESLMGSLDWLTPVSRIILTTRNKQVLRNW---GVSKIYEMEALEYHHALELFSR 260 (439)
Q Consensus 192 ---~-~~~~LlVlD--dv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~ 260 (439)
. +++.+||+- +=.+... ..+.. .+..-..-|.|++----+.+.... ..-.-|-+++++.++|.+.-..
T Consensus 355 ~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 355 AKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 2 566666653 2222221 11111 111112456777655433332111 1235688999999999876544
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.33 E-value=6.1e-06 Score=78.38 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=80.2
Q ss_pred CcccccchHHHHHhhhcc-------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHH
Q 037205 115 QLVGVESRVEEIESLLSV-------------ESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLI 171 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll 171 (439)
.++|.+...+.|.+.... ..+....+.++|++|+||||+|+.+++.+.. ++ -...+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 467777666655543211 1234567889999999999999999876532 11 001111
Q ss_pred HHHhcCCCCCCcHHHHHHHhc-cCCceEEecCCCC----------HHHHHHHhcCCCCCCCCcEEEEEeCchHHHH----
Q 037205 172 SNLLKDENAIPGIDLNFRRLS-RMKVLIFFYDVTC----------FSQLESLMGSLDWLTPVSRIILTTRNKQVLR---- 236 (439)
Q Consensus 172 ~~l~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~---- 236 (439)
....+. ....+...+. ...-+|++|+++. .+.++.+............+|+++.....-.
T Consensus 87 ~~~~g~-----~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~ 161 (261)
T TIGR02881 87 GEYIGH-----TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSL 161 (261)
T ss_pred hhhccc-----hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhc
Confidence 111000 1122222222 1245889999964 2345666655543333445555554322100
Q ss_pred --hc--CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205 237 --NW--GVSKIYEMEALEYHHALELFSRHAFK 264 (439)
Q Consensus 237 --~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~ 264 (439)
.. .....+.+++++.++-.+++.+.+..
T Consensus 162 ~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 162 NPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 01 12356889999999999999877643
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2e-05 Score=76.97 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=105.2
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHH---HHHHHHhc-CCCCCCcHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLAT---KLISNLLK-DENAIPGIDLNFR 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~---~ll~~l~~-~~~~~~~~~~l~~ 189 (439)
.+++|-+..++.+.+.+..+ .-.....++|+.|+||||+|+.++..+..-.... .+ ..+.. ....+ .++.+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~~~~~~~~i-~v~~ir~ 80 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEFKPINKKSI-GVDDIRN 80 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEeccccCCCC-CHHHHHH
Confidence 46789888889999888632 2345778999999999999999887641000000 00 00000 00111 2223332
Q ss_pred Hh--------ccCCceEEecCCC--CHHHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEEEcCCCCHHHHHHH
Q 037205 190 RL--------SRMKVLIFFYDVT--CFSQLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHALEL 257 (439)
Q Consensus 190 ~l--------~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~L 257 (439)
.. .+++-++|+|+++ +...++.|+..+....+++.+|++|.+.... .. ......+++.+++.++....
T Consensus 81 ~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 160 (313)
T PRK05564 81 IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKF 160 (313)
T ss_pred HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 22 2345567777764 4556778887777666788888888766432 22 12346889999999999887
Q ss_pred HHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205 258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV 292 (439)
Q Consensus 258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 292 (439)
+.+.. . .. ..+.+..++..++|.|.-+..
T Consensus 161 l~~~~-~--~~---~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 161 ISYKY-N--DI---KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHHh-c--CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 76543 1 11 134477889999998875543
No 56
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=8.2e-06 Score=85.97 Aligned_cols=175 Identities=13% Similarity=0.121 Sum_probs=106.9
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC-------
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE------- 178 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~------- 178 (439)
..++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-. .. ..-.....+....
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 3679999999999998887432 2345789999999999999998876532 00 0000111111100
Q ss_pred --CCCCcHHHHHH---H-----hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cCCCeEE
Q 037205 179 --NAIPGIDLNFR---R-----LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIY 244 (439)
Q Consensus 179 --~~~~~~~~l~~---~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~ 244 (439)
.....++.+++ . ..++.-++|+|+++.. ...+.|+..+.......++|++|.+ ..+... ......|
T Consensus 94 daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~ 173 (647)
T PRK07994 94 DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 (647)
T ss_pred cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEe
Confidence 00012223322 2 2345668999999643 4566666655544456666655544 444322 2235789
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
.+.+|+.++..+.+.+.+-...... ..+....|++.++|.+--.
T Consensus 174 ~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 174 HLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDA 217 (647)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 9999999999998887663332222 2456778999999977643
No 57
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.7e-05 Score=77.19 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=111.4
Q ss_pred CCCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----------HHHH
Q 037205 110 RDNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----------LATK 169 (439)
Q Consensus 110 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----------~~~~ 169 (439)
...+..+.+|+.+++++...|.. .++...-+.|+|.+|.|||+.++.+++.+.. ++ +...
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 35566799999999999998864 2223334889999999999999999998876 11 5666
Q ss_pred HHHHHhcCCC-CCC---cHHHHHHHhc--cCCceEEecCCCCHH-----HHHHHhcCCCCCCCCcEE--EEEeCchHHHH
Q 037205 170 LISNLLKDEN-AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS-----QLESLMGSLDWLTPVSRI--ILTTRNKQVLR 236 (439)
Q Consensus 170 ll~~l~~~~~-~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~I--iiTTR~~~v~~ 236 (439)
++..+..... ..+ ..+.+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+.....
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHH
Confidence 6666652222 222 4455555554 477899999996432 233443333222 3443 33444333322
Q ss_pred h--------cCCCeEEEcCCCCHHHHHHHHHHhh---hcCCCCCcchHHHHHHHHHHhCC-CcHHHHHH
Q 037205 237 N--------WGVSKIYEMEALEYHHALELFSRHA---FKRNHPDVGYEKLSSNVMKYVQG-VPLALKVL 293 (439)
Q Consensus 237 ~--------~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~ 293 (439)
. ++. ..+..++-+.+|-.+.+..++ |......+...+++..++...+| --.|+..+
T Consensus 171 ~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 171 YLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2 222 336788889999999888765 44444454555555555555554 34444444
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.3e-05 Score=80.27 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=103.8
Q ss_pred CCcccccchHHHHHhhhccCCC--------CeeEEEEecCCCChhHHHHHHHHhHHhH-H---H------HHHHHHHHHh
Q 037205 114 SQLVGVESRVEEIESLLSVESK--------DVYALGIWGIGGIGKTTIARATFDKISR-Y---L------LATKLISNLL 175 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f---~------~~~~ll~~l~ 175 (439)
.+++|-+..++.|.+.+..+.+ -...+.++|++|+|||++|+.++..+-- - . ....+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~--- 81 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA--- 81 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc---
Confidence 5688999999999998875331 2467889999999999999998765310 0 0 0000000
Q ss_pred cCCCCC---------CcHH---HHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHH
Q 037205 176 KDENAI---------PGID---LNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVL 235 (439)
Q Consensus 176 ~~~~~~---------~~~~---~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~ 235 (439)
+..+++ -.++ .+.+.+. +++-++++|+++.. .....|+..+....++..+|++|.+. .+.
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence 011110 0222 3333332 34457888999754 33455665555445567677666654 333
Q ss_pred Hhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 236 RNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 236 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
... .....+.+.+++.++..+.+.... . .+ .+.+..++..++|.|.....+
T Consensus 162 pTIrSRc~~i~f~~~~~~~i~~~L~~~~---~-~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 162 PTIRSRCRHVALRTPSVEAVAEVLVRRD---G-VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHHHhhCeEEECCCCCHHHHHHHHHHhc---C-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 332 234688999999999988886432 1 11 355778899999999754433
No 59
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=81.45 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=106.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHhcCCCCC
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLLKDENAI 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~~~~~~~ 181 (439)
..++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.++..+-- .- ....+..........+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3679999999998888876332 2347889999999999999988765310 00 0111111000000011
Q ss_pred -----CcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-chHHHHhc-CCCeEE
Q 037205 182 -----PGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-GVSKIY 244 (439)
Q Consensus 182 -----~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~~~~~~ 244 (439)
..++.+++.+. ++.-++|+|+++.. ...+.|+..+....+.+++|++|. ...+.... .....+
T Consensus 91 daas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~ 170 (491)
T PRK14964 91 DAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRF 170 (491)
T ss_pred ecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheee
Confidence 13334433322 35568999999643 346666666655456677766554 34443332 234678
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
++.+++.++..+.+.+.+......- ..+.+..|++.++|.+-.
T Consensus 171 ~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 171 DLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRN 213 (491)
T ss_pred ecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 9999999999998888775443222 255677888899887753
No 60
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=80.30 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=104.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH-----------HHHHHHHH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL-----------LATKLISN 173 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~-----------~~~~ll~~ 173 (439)
..+++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+.- |. ....+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3679999998898888887322 2345889999999999999998776520 00 00000000
Q ss_pred Hhc-----CCCCCCcHHHH---HHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh
Q 037205 174 LLK-----DENAIPGIDLN---FRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN 237 (439)
Q Consensus 174 l~~-----~~~~~~~~~~l---~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~ 237 (439)
... .......++.+ .+.+. +++-++|+|+++.. ..++.|...+....+.+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000 00000123333 33332 34568899999744 35666666665445566666555 43444332
Q ss_pred c-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 238 W-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 238 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
. .....+++.+++.++..+.+...+-..... -..+.+..++..++|.+--+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2 123568899999999988887765332211 22567889999999977543
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=9.6e-06 Score=84.11 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=105.8
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC-CC---C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE-NA---I 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~-~~---~ 181 (439)
..++||-+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+.. .. ..-.....+.... .+ +
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 367999999999999888632 22456789999999999999999876531 00 0000000010000 00 0
Q ss_pred -----CcHH---HHHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE-EeCchHHHHh-cCCCeEE
Q 037205 182 -----PGID---LNFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL-TTRNKQVLRN-WGVSKIY 244 (439)
Q Consensus 182 -----~~~~---~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~-~~~~~~~ 244 (439)
.+++ .+...+ .+++-++|+|+++.. ...+.|+..+......+.+|+ ||....+... ......+
T Consensus 94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~ 173 (546)
T PRK14957 94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQL 173 (546)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeE
Confidence 0222 222222 245669999999743 446667666654445666664 5443334323 2335789
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL 293 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 293 (439)
++.+++.++....+.+.+-..+.. -..+....+++.++|-+- |+..+
T Consensus 174 ~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 174 HLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999888777755332221 225567788888988654 44444
No 62
>PRK06620 hypothetical protein; Validated
Probab=98.28 E-value=7.4e-06 Score=75.29 Aligned_cols=132 Identities=12% Similarity=0.074 Sum_probs=78.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCHHH--HHHHhc
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQ--LESLMG 214 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~l~~ 214 (439)
+.+.|||++|+|||+|++.+++.... |+. . ........ ...-+|++||++..++ +-.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~------~----------~~~~~~~~-~~~d~lliDdi~~~~~~~lf~l~N 107 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK------D----------IFFNEEIL-EKYNAFIIEDIENWQEPALLHIFN 107 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc------h----------hhhchhHH-hcCCEEEEeccccchHHHHHHHHH
Confidence 67899999999999999987766432 110 0 00000111 2335788899975432 222222
Q ss_pred CCCCCCCCcEEEEEeCchH-------HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 215 SLDWLTPVSRIILTTRNKQ-------VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 215 ~~~~~~~gs~IiiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
... ..|..||+|++.+. +...+....++++++++.++-..++.+.+...... -.++...-+++.+.|--
T Consensus 108 ~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~--l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 108 IIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT--ISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCH
Confidence 111 34678999887432 22333445689999999999888887776422211 12566777777776654
Q ss_pred HHH
Q 037205 288 LAL 290 (439)
Q Consensus 288 Lal 290 (439)
-.+
T Consensus 184 r~l 186 (214)
T PRK06620 184 SKI 186 (214)
T ss_pred HHH
Confidence 443
No 63
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=98.28 E-value=2.6e-07 Score=79.25 Aligned_cols=68 Identities=26% Similarity=0.283 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHhhhhcCC--CEEEEEeeecCccccc-cccccchhhHHHHHHHhhhc--hHHHHHHHHHHH
Q 037205 4 CSLLIGLKLVLFHLTQKEHA--QIVLPVFYRVDPSYVR-NQTGSFGDSFSKLQERFEQN--LEKLQTWRKGLR 71 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~~~--~~vlPiFy~v~ps~vr-~q~~~~~~~~~~~~~~~~~~--~e~v~~W~~aL~ 71 (439)
.|.||+.||.++++|....+ +.|+|+||+|.|++++ .+.+.|...|.......... .++...|++++.
T Consensus 68 ~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 68 SSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 47899999999999997655 8999999999999999 79999988887766554433 467889998864
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.9e-05 Score=80.44 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=105.2
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH----HHHHHHHHHhcCC-C-----
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL----LATKLISNLLKDE-N----- 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~----~~~~ll~~l~~~~-~----- 179 (439)
..++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+-- +- -.-.....+.... .
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3679999999999999987332 2446789999999999999998876521 00 0000011111100 0
Q ss_pred ---CCCcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEE
Q 037205 180 ---AIPGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIY 244 (439)
Q Consensus 180 ---~~~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~ 244 (439)
....++.+++.+. ++.-++|+|+++.. ...++|+..+....+.+++|++|.+. .+.... .....+
T Consensus 94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~ 173 (509)
T PRK14958 94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQF 173 (509)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhh
Confidence 0113343443332 35568889999753 44666666555444567777655443 332221 234568
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
++.+++.++....+.+.+-..+... ..+....|++.++|.+.-+
T Consensus 174 ~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 174 HLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 8999999988877666653333222 2455778899999987544
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.7e-05 Score=86.28 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=105.6
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHhcCC----
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLLKDE---- 178 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~~~~---- 178 (439)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.+.- .- ....+...-....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 679999999999999887322 2346789999999999999998877631 00 0111110000000
Q ss_pred ---CCCCcHHHHHH---H-----hccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-chHHHHhc-CCCeE
Q 037205 179 ---NAIPGIDLNFR---R-----LSRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-GVSKI 243 (439)
Q Consensus 179 ---~~~~~~~~l~~---~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~~~~~ 243 (439)
.....++.+++ . ..++.-++|||+++.. ...+.|+..+......+.+|++|. ...+...+ .....
T Consensus 94 idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~ 173 (824)
T PRK07764 94 IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHH 173 (824)
T ss_pred ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeE
Confidence 00012333332 2 2245558889999754 446666666655556666665554 44444432 24578
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
|++..++.++..+.+.+.+-...... ..+....|++.++|.+..
T Consensus 174 v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 174 YPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 89999999999888877653332211 245677889999998743
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.24 E-value=7.8e-06 Score=88.77 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=81.8
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH-HHHHHHHHHhcCCCC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL-LATKLISNLLKDENA 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~-~~~~ll~~l~~~~~~ 180 (439)
..++||+.++..+.+.|... ...-+.++|++|+|||++|+.+++++.. |. ....++.. ....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~---~~~~ 256 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG---TKYR 256 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh---cccc
Confidence 56999999999999988743 3345679999999999999999988632 00 11111110 0000
Q ss_pred CCcHHHHHHHh----ccCCceEEecCCCCH-----------HHHHHHhcCCCCCCCC-cEEEEEeCchHHHH-------h
Q 037205 181 IPGIDLNFRRL----SRMKVLIFFYDVTCF-----------SQLESLMGSLDWLTPV-SRIILTTRNKQVLR-------N 237 (439)
Q Consensus 181 ~~~~~~l~~~l----~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s~IiiTTR~~~v~~-------~ 237 (439)
-.....++..+ ...+.+|++|+++.. +.-+.|.+.+. .| -++|-+|..+..-. .
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al 333 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRAL 333 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHH
Confidence 00112222222 246789999999632 11223333332 33 24444443221110 0
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 238 WGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 238 ~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
......+++++++.++..+++....
T Consensus 334 ~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 334 SRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1123578999999999999998644
No 67
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.23 E-value=7e-06 Score=82.34 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=100.1
Q ss_pred CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205 111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK 176 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~ 176 (439)
..-.++.|.+..+++|.+.+.. +-...+-+.++|++|+|||+||+.+++.... |+ ....+.....+
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g 221 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG 221 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc
Confidence 3446688999999888886531 1134678999999999999999999987654 22 11122221111
Q ss_pred CCCCCCcHHHHHHHhccCCceEEecCCCCH-------------H---HHHHHhcCCCCC--CCCcEEEEEeCchHHHHh-
Q 037205 177 DENAIPGIDLNFRRLSRMKVLIFFYDVTCF-------------S---QLESLMGSLDWL--TPVSRIILTTRNKQVLRN- 237 (439)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~- 237 (439)
... ....+.+.......+.+|+||+++.. . .+..++..+..+ ..+..||.||........
T Consensus 222 e~~-~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA 300 (398)
T PTZ00454 222 EGP-RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 300 (398)
T ss_pred hhH-HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence 100 00112222233457889999998532 0 122333333221 235567888875544322
Q ss_pred ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
...+..++++..+.++-.++|..+..+... .++ -....++..+.|+.-|
T Consensus 301 llR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~d--vd~~~la~~t~g~sga 353 (398)
T PTZ00454 301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEE--VDLEDFVSRPEKISAA 353 (398)
T ss_pred HcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-Ccc--cCHHHHHHHcCCCCHH
Confidence 134567899999999988888766532221 111 1144566667666443
No 68
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=2.4e-05 Score=79.79 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=89.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH--
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF-- 206 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-- 206 (439)
...+.|||.+|+|||+||+.+++.+.. |+...+++..+...... .....+++......-+|++||+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~-~~~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE-GKLNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc-ccHHHHHHHHHhcCCEEEEechhhhcC
Confidence 456899999999999999999988643 33222222222211100 1233344444445668999999632
Q ss_pred -HHH-HHHhcCCCC-CCCCcEEEEEeC-chHHHHh--------cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHH
Q 037205 207 -SQL-ESLMGSLDW-LTPVSRIILTTR-NKQVLRN--------WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEK 274 (439)
Q Consensus 207 -~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 274 (439)
... +.+...+.. ...|..||+||. .+.-... +.....+++++++.+.-..++.+.+....... .++
T Consensus 209 ~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l--~~e 286 (440)
T PRK14088 209 KTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL--PEE 286 (440)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC--CHH
Confidence 111 122221110 123457888874 4432222 23345788999999999999988874332222 256
Q ss_pred HHHHHHHHhCCCcHHHH
Q 037205 275 LSSNVMKYVQGVPLALK 291 (439)
Q Consensus 275 ~~~~i~~~~~GlPLal~ 291 (439)
.+..|++.+.|.--.|.
T Consensus 287 v~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 287 VLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhccccCHHHHH
Confidence 78888888887655544
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.22 E-value=1.8e-05 Score=83.95 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+.++|++..++.+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999988877652 335579999999999999999988665
No 70
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.2e-05 Score=82.17 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=110.4
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHhcCCCCC-
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLLKDENAI- 181 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~~~~~~~- 181 (439)
.+++|-+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+-- +. ....+..........+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 67899988888888888632 22467889999999999999998876531 00 0111111100000001
Q ss_pred ----CcHHH---HHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEEE
Q 037205 182 ----PGIDL---NFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYE 245 (439)
Q Consensus 182 ----~~~~~---l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~ 245 (439)
..++. +.+.+ .+++-++|+|+++.. .....|+..+........+|++|.+ ..+...+ .....++
T Consensus 95 ~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~ 174 (624)
T PRK14959 95 GASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFT 174 (624)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccc
Confidence 02222 32222 245668999999654 4456666665443345566665554 4443332 2335789
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHHHhh
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLGCFL 297 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L 297 (439)
+.+++.++....+...+....... ..+.+..|++.++|.+ .|+..+...+
T Consensus 175 F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 175 FTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999988887664433211 2566888999999964 6777776544
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.8e-05 Score=79.87 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=107.2
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH--HHHHHHHHHhcCCC-C----
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL--LATKLISNLLKDEN-A---- 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~--~~~~ll~~l~~~~~-~---- 180 (439)
.++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.. +- -.......+..... +
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i 94 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM 94 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence 679999999999988886432 2456789999999999999998876531 00 00011112211110 0
Q ss_pred ----CCcHHHH---HHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEE
Q 037205 181 ----IPGIDLN---FRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIY 244 (439)
Q Consensus 181 ----~~~~~~l---~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 244 (439)
....+.+ .+.+. +++-++|+|+++.. +..+.|+..+......+.+|++|.+ ..+.... .....+
T Consensus 95 ~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i 174 (585)
T PRK14950 95 DAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRF 174 (585)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcccee
Confidence 0122222 22222 34568999999643 4466666655544456666665543 3333322 234578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV 292 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 292 (439)
++..++..+....+.+.+...+... ..+.+..+++.++|.+..+..
T Consensus 175 ~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 175 DFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999888887764433222 246688999999998865443
No 72
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.5e-05 Score=74.92 Aligned_cols=170 Identities=18% Similarity=0.330 Sum_probs=104.1
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
..+=|-+.++++|.+.... +-+..+-|.+||+||.|||-||++|+++... |+ ...++.+...++..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 4456788899999886532 1245678899999999999999999999876 54 44444444443321
Q ss_pred CCCcHHHHHHHhc-cCCceEEecCCCCH-------------H---HHHHHhcCCCCCCC--CcEEEEEeCchHH-----H
Q 037205 180 AIPGIDLNFRRLS-RMKVLIFFYDVTCF-------------S---QLESLMGSLDWLTP--VSRIILTTRNKQV-----L 235 (439)
Q Consensus 180 ~~~~~~~l~~~l~-~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~--gs~IiiTTR~~~v-----~ 235 (439)
. .+..+.+..+ +.+..|.+|.++.. + .+-+|+..+..|.+ +-|||..|.-..+ +
T Consensus 231 R--lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALL 308 (406)
T COG1222 231 R--LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALL 308 (406)
T ss_pred H--HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhc
Confidence 0 1222222222 46788999998521 1 13344555554433 4588876654433 3
Q ss_pred HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcHH
Q 037205 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
..-..+..++++..+.+.=.++|.-|+-+-. ...-+ .+.+++.|.|.-=|
T Consensus 309 RPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGA 359 (406)
T COG1222 309 RPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGA 359 (406)
T ss_pred CCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchH
Confidence 3334667899997777777788877763322 22223 44566777776543
No 73
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.9e-05 Score=75.72 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=108.1
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------------HHHHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------------LATKLISN 173 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------------~~~~ll~~ 173 (439)
.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|..+...+-. +. ....+...
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence 455779999999999999887432 3456889999999999999988776521 00 11111111
Q ss_pred -------HhcC---C-----CCCC--cHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe
Q 037205 174 -------LLKD---E-----NAIP--GIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT 229 (439)
Q Consensus 174 -------l~~~---~-----~~~~--~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 229 (439)
+... . ..+. .+..+.+.+. ++.-++|+|+++.. ...+.|+..+........+|++|
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0000 0 0111 2222333332 45678999999754 34555555554433455555444
Q ss_pred -CchHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205 230 -RNKQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG 294 (439)
Q Consensus 230 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 294 (439)
+...+.... .....+.+.+++.++..+++....... . -..+.+..+++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 433333222 233689999999999999998743211 1 124557789999999998655443
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.1e-05 Score=80.74 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=104.7
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH-------HHHHHHHHHhc-
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL-------LATKLISNLLK- 176 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~-------~~~~ll~~l~~- 176 (439)
..++||-+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+-- |. -.-.....+..
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 367999999999999888632 12345889999999999999988766520 00 00000000000
Q ss_pred CCCC--------CCcHHHHHH---Hh-----ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEe-CchHHHHh
Q 037205 177 DENA--------IPGIDLNFR---RL-----SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTT-RNKQVLRN 237 (439)
Q Consensus 177 ~~~~--------~~~~~~l~~---~l-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~ 237 (439)
...+ ...++.+++ .+ .+++-++|+|+++... ..+.|+..+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 012333332 23 2345688999996543 4566666655444455555444 44444433
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHH
Q 037205 238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKV 292 (439)
Q Consensus 238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 292 (439)
......+++.+++.++....+.+.+-...... ..+.+..+++.++|..- |+..
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHH
Confidence 23457899999999998887777653322111 25668889999999554 4443
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=0.00013 Score=76.59 Aligned_cols=180 Identities=19% Similarity=0.143 Sum_probs=108.9
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--HHHHHHHHHhcC---C-C--
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--LATKLISNLLKD---E-N-- 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--~~~~ll~~l~~~---~-~-- 179 (439)
..++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.++..+.- .- ..-.....+... . +
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 3679999999999999887322 2345789999999999999998876531 00 000001111110 0 0
Q ss_pred -----CCCcHHHHH---HHh-----ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEE-EeCchHHHHhc-CCCe
Q 037205 180 -----AIPGIDLNF---RRL-----SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIIL-TTRNKQVLRNW-GVSK 242 (439)
Q Consensus 180 -----~~~~~~~l~---~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~-~~~~ 242 (439)
...+++.++ +.+ .+++-++|+|+++. ....+.|+..+........+|+ ||....+.... ....
T Consensus 91 eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~ 170 (584)
T PRK14952 91 ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH 170 (584)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence 011333333 222 24556889999964 3456666666655445666665 44444444332 3357
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205 243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC 295 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 295 (439)
.+++..++.++..+.+.+.+-...... ..+....|++.++|.+- |+..+-.
T Consensus 171 ~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 171 HYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 899999999999888877664433222 24566778888998764 4444433
No 76
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=0.00013 Score=76.84 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=108.2
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-H---------H--HHHHHHHHHhcCC-C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-Y---------L--LATKLISNLLKDE-N 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f---------~--~~~~ll~~l~~~~-~ 179 (439)
..+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+.- . . -...-...+.... .
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 3679999999999999887332 2446889999999999999998876531 0 0 0000001111100 0
Q ss_pred C--------CCcHHHHHHH---hc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-C
Q 037205 180 A--------IPGIDLNFRR---LS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-G 239 (439)
Q Consensus 180 ~--------~~~~~~l~~~---l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~ 239 (439)
+ ...++.+++. +. +++-++|+|+++.. ...+.|+..+....+.+.+|++| ....+.... .
T Consensus 102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 0 0123333333 22 34567899999644 34566666555444566666554 434443332 2
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
....+++..++.++....+.+.+-...... ..+.+..|++.++|.+.-+.
T Consensus 182 Rcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 182 RCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 346889999999999998888764333222 24667888999999886554
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.15 E-value=2e-05 Score=77.05 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcH-HHHHH
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGI-DLNFR 189 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~-~~l~~ 189 (439)
...+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.... +. .+.......... ..+..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~-------~i~~~~~~~~~i~~~l~~ 90 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL-------FVNGSDCRIDFVRNRLTR 90 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce-------EeccCcccHHHHHHHHHH
Confidence 3467899999999999988732 23467777999999999999999876532 11 000000000000 11111
Q ss_pred H-----hccCCceEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hhc-CCCeEEEcCCCCHHHHHHHHH
Q 037205 190 R-----LSRMKVLIFFYDVTCF---SQLESLMGSLDWLTPVSRIILTTRNKQVL-RNW-GVSKIYEMEALEYHHALELFS 259 (439)
Q Consensus 190 ~-----l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~ 259 (439)
. +.+.+-++|+|+++.. +....|...+.....++++|+||...... ... .....+.++..+.++..+++.
T Consensus 91 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 91 FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 1 1234568889999754 22233333233334677889888754321 111 223467787888888776654
Q ss_pred H
Q 037205 260 R 260 (439)
Q Consensus 260 ~ 260 (439)
.
T Consensus 171 ~ 171 (316)
T PHA02544 171 Q 171 (316)
T ss_pred H
Confidence 3
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.14 E-value=2e-05 Score=81.92 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=98.4
Q ss_pred CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
.-.+++|.+...+++.+++.. +....+-+.++|++|+|||+||+.+++.... |+ ....+.....+..
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~ 132 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 132 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhccc
Confidence 346688888777666654431 1223456889999999999999999887654 22 1112221111110
Q ss_pred CCCCcHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHH----
Q 037205 179 NAIPGIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLR---- 236 (439)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~---- 236 (439)
. ......+.......+.+|+||+++... .+..++..+..+ ..+-.||.||..+....
T Consensus 133 ~-~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~ 211 (495)
T TIGR01241 133 A-SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALL 211 (495)
T ss_pred H-HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHh
Confidence 0 001222233334567899999995421 122333333222 22345566666543222
Q ss_pred -hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHH
Q 037205 237 -NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVL 293 (439)
Q Consensus 237 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 293 (439)
....+..+.++..+.++-.++|..+.-...... ......+++.+.|.- --|..+
T Consensus 212 r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 212 RPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred cCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 123456789999999888898887763322211 222457788887754 334433
No 79
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.13 E-value=6.6e-05 Score=77.10 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=98.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV 203 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 203 (439)
....+.|+|.+|+|||+|++.+++.... |+ +...+...+... ....+.+.++ +.-+|+|||+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~dlLiiDDi 220 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNN-----TMEEFKEKYR-SVDVLLIDDI 220 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcC-----cHHHHHHHHh-cCCEEEEehh
Confidence 3466899999999999999999988753 22 222233333211 2234444444 3458889999
Q ss_pred CCHH----HHHHHhcCCCC-CCCCcEEEEEeCchH---------HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037205 204 TCFS----QLESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPD 269 (439)
Q Consensus 204 ~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 269 (439)
+... ..+.+...+.. ...|..||+||.... +...+.....+++++++.++-..++.+.+-.....
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~- 299 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID- 299 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 5321 11222221111 123456788776431 12233344678999999999999999887443221
Q ss_pred cchHHHHHHHHHHhCCCcHHHHHHHHhh------cC--CCHHHHHHHHHHH
Q 037205 270 VGYEKLSSNVMKYVQGVPLALKVLGCFL------YK--REKEVWESAINKL 312 (439)
Q Consensus 270 ~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~--~~~~~w~~~l~~l 312 (439)
-.++.+.-|++.+.|..-.|.-+-..| .+ -+....++++..+
T Consensus 300 -l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 300 -LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred -CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 225778888888888776544332222 11 3455566666654
No 80
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.12 E-value=2.7e-06 Score=75.92 Aligned_cols=49 Identities=35% Similarity=0.535 Sum_probs=34.1
Q ss_pred CcccccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 115 QLVGVESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.||||+.+++++...|.. .....+.+.|+|.+|+|||+|.++++..+..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 389999999999999942 3445789999999999999999998887654
No 81
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.5e-05 Score=77.34 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=105.3
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HHHHHHHHHHH----hc
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YLLATKLISNL----LK 176 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~~~~~ll~~l----~~ 176 (439)
-.+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+.. -.....+-..- ..
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 3679999999999999886322 2356789999999999999998776521 00000000000 00
Q ss_pred -CCCCCCcHHHH---HHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeE
Q 037205 177 -DENAIPGIDLN---FRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKI 243 (439)
Q Consensus 177 -~~~~~~~~~~l---~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~ 243 (439)
......+.+.+ .+.+. +.+-++|+|+++.. ...+.|...+........+|++|.+ ..+.... .....
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~ 174 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQK 174 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceE
Confidence 00000122222 22222 46678899998644 3455555555444456666666543 3333221 23467
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205 244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL 293 (439)
Q Consensus 244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 293 (439)
+++.+++.++....+.+.+-..+... ..+.+..+++.++|.+- |+..+
T Consensus 175 v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 175 MHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999888877663322211 25668889999998664 44443
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.12 E-value=7e-05 Score=75.88 Aligned_cols=147 Identities=16% Similarity=0.243 Sum_probs=87.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT 204 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 204 (439)
...+.|+|.+|+|||+|++.+++.+.. |+ +...+...+... ....+.+.+++ .-+|+|||++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~ 209 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN-----KMEEFKEKYRS-VDLLLIDDIQ 209 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC-----CHHHHHHHHHh-CCEEEEehhh
Confidence 456889999999999999999988643 22 222233332211 23334444443 3488899996
Q ss_pred CHH---H-HHHHhcCCCC-CCCCcEEEEEeCc-hHHH--------HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCc
Q 037205 205 CFS---Q-LESLMGSLDW-LTPVSRIILTTRN-KQVL--------RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDV 270 (439)
Q Consensus 205 ~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~-~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 270 (439)
... . .+.+...+.. ...+..+|+||.. +... ..+.....+.+++.+.++-..++.+.+-......
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l- 288 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL- 288 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 421 1 1222222111 1235567777763 2222 2222335788999999999999988874433222
Q ss_pred chHHHHHHHHHHhCCCcHHHH
Q 037205 271 GYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 271 ~~~~~~~~i~~~~~GlPLal~ 291 (439)
.++....|++.+.|.+-.|.
T Consensus 289 -~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 289 -PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred -CHHHHHHHHHhcCCCHHHHH
Confidence 25777888888888766544
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2.6e-05 Score=81.24 Aligned_cols=177 Identities=17% Similarity=0.141 Sum_probs=104.8
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcCC--------
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKDE-------- 178 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~~-------- 178 (439)
.++||-+..++.|.+.+..+. -...+.++|++|+||||+|+.+...+.- .. -.-.-...+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 679999999999998887322 2346689999999999999998776521 00 0000000010000
Q ss_pred -CCCCcHHHHHHHh--------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHh-cCCCeEEE
Q 037205 179 -NAIPGIDLNFRRL--------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYE 245 (439)
Q Consensus 179 -~~~~~~~~l~~~l--------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~ 245 (439)
.....++.+++.+ .+++-++|+|+++... ..+.|+..+......+.+|++|.++ .+... ......++
T Consensus 95 ~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~ 174 (527)
T PRK14969 95 AASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 174 (527)
T ss_pred ccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHh
Confidence 0011233333322 2455689999997543 3566666655444566666655443 33222 11235788
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL 293 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 293 (439)
+.+++.++..+.+.+.+-..+.. ...+.+..+++.++|.+- |+..+
T Consensus 175 f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 175 LKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988887766333322 124566888899999775 44443
No 84
>CHL00176 ftsH cell division protein; Validated
Probab=98.12 E-value=2.4e-05 Score=82.97 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=99.0
Q ss_pred CCCcccccchHHHHHhhhcc---C-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 113 KSQLVGVESRVEEIESLLSV---E-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
..+++|.+...+++.+.+.. . ....+-|.++|++|+|||+||+.++..... |+ ...++.....+..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~- 260 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG- 260 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh-
Confidence 35688988877777665421 1 112456899999999999999999887654 32 1111111111100
Q ss_pred CCCcHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh----
Q 037205 180 AIPGIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN---- 237 (439)
Q Consensus 180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~---- 237 (439)
.......+.......+++|+||+++.. ..+..|+..+..+ ..+-.||.||........
T Consensus 261 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlR 340 (638)
T CHL00176 261 AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLR 340 (638)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhc
Confidence 000122334444567899999999533 1134444333322 234566667765543332
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC
Q 037205 238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV 286 (439)
Q Consensus 238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 286 (439)
...+..+.++..+.++-.+++..++-.... ........+++.+.|.
T Consensus 341 pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 341 PGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGF 387 (638)
T ss_pred cccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCC
Confidence 124567889999999999999887743221 1133456777777774
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.11 E-value=2.5e-05 Score=85.71 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=88.8
Q ss_pred HHHHHHHhhhhcccccccCCCCCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----H
Q 037205 90 LINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----Y 164 (439)
Q Consensus 90 ~i~~iv~~i~~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f 164 (439)
.+++...++.....+.. -..+|||+.++..+...|... ...-+.++|.+|+||||+|+.+++++.. .
T Consensus 169 ~l~~~~~~L~~~~r~~~------ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGK------IDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred hHHHHhhhHHHHhcCCC------CCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 44454444444444433 257999999999999988642 3345669999999999999999988642 0
Q ss_pred HHHHHH----HHHHhc-CCC--CC-CcHHHHHHHhc--cCCceEEecCCCCHH-------HHH---HHhcCCCCCCCC-c
Q 037205 165 LLATKL----ISNLLK-DEN--AI-PGIDLNFRRLS--RMKVLIFFYDVTCFS-------QLE---SLMGSLDWLTPV-S 223 (439)
Q Consensus 165 ~~~~~l----l~~l~~-~~~--~~-~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~---~l~~~~~~~~~g-s 223 (439)
+....+ +..+.. ... +. .....+...+. +.+++|++|++.... +.+ .|.+.+. .| -
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l 317 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGEL 317 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCe
Confidence 000000 000110 000 00 01111222222 468999999985431 111 2333332 33 4
Q ss_pred EEEEEeCchHHHHh-------cCCCeEEEcCCCCHHHHHHHHHH
Q 037205 224 RIILTTRNKQVLRN-------WGVSKIYEMEALEYHHALELFSR 260 (439)
Q Consensus 224 ~IiiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 260 (439)
++|-||.....-.. ......+.+++++.++..+++..
T Consensus 318 ~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 318 RTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred EEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 55555543222111 12346899999999999999753
No 86
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.5e-05 Score=75.06 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHH-HHHHHHHh-cCCCCCCcHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLA-TKLISNLL-KDENAIPGIDLNFR 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~-~~ll~~l~-~~~~~~~~~~~l~~ 189 (439)
.+++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+.+.. +-.. ...-..+. .........+.+++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHH
Confidence 67899999999999988732 23457889999999999999998766421 0000 00000000 00001011222322
Q ss_pred Hh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh-cCCCeEEEcCCCCHHHHHHH
Q 037205 190 RL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN-WGVSKIYEMEALEYHHALEL 257 (439)
Q Consensus 190 ~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~L 257 (439)
.. .+++-++++|+++.. ..++.+...+......+.+|++| ....+... ......+++.+++.++....
T Consensus 96 l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~ 175 (367)
T PRK14970 96 LIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEH 175 (367)
T ss_pred HHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHH
Confidence 21 234568999998643 33555654443333445555555 33333222 12345789999999999988
Q ss_pred HHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
+...+...+..- ..+.+..++..++|.+-.
T Consensus 176 l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 176 LAGIAVKEGIKF--EDDALHIIAQKADGALRD 205 (367)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 888774433222 256788888899986653
No 87
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.10 E-value=7.7e-05 Score=69.56 Aligned_cols=246 Identities=18% Similarity=0.235 Sum_probs=133.2
Q ss_pred CCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCC---cHH
Q 037205 113 KSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIP---GID 185 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~---~~~ 185 (439)
-.+|||.++..+++.-.+.. .....--+.++|+||.||||||.-+++.+.. .+.. +.+.+. ...
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---------n~k~tsGp~leK~gDla 95 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---------NLKITSGPALEKPGDLA 95 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---------CeEecccccccChhhHH
Confidence 37899999888888776653 2234667899999999999999999888653 0000 011111 122
Q ss_pred HHHHHhccCCceEEecCCCCHHH-HH-HHhcCCCC--------CCCCcE-----------EEEEeCchHHHHhc--CCCe
Q 037205 186 LNFRRLSRMKVLIFFYDVTCFSQ-LE-SLMGSLDW--------LTPVSR-----------IILTTRNKQVLRNW--GVSK 242 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv~~~~~-~~-~l~~~~~~--------~~~gs~-----------IiiTTR~~~v~~~~--~~~~ 242 (439)
.+...|+. .=+|.+|.+..... .+ -|.+.... .++++| |=.|||.-.+...+ ...-
T Consensus 96 aiLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi 174 (332)
T COG2255 96 AILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI 174 (332)
T ss_pred HHHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence 22222333 34455688753221 11 12222111 133443 33689955443332 1234
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHH--HhcCCCccH
Q 037205 243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINK--LQRILYPSI 320 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~--l~~~~~~~i 320 (439)
+.+++--+.+|-.+...+.+..-... -.++.+.+|++...|-|--..-+-+..+. +..+... +.....+..
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----fa~V~~~~~I~~~ia~~a 247 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVRD-----FAQVKGDGDIDRDIADKA 247 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHHH-----HHHHhcCCcccHHHHHHH
Confidence 66788888999999888877322211 22567899999999999754443333321 1111000 000000113
Q ss_pred HHHHHHhhcCCCHHhHHHHhcccccccc-c---------CCCch---hHHH-HHHhhCCceEEccCCeE
Q 037205 321 LEVLKISYDGLDNKEKNIFLGVACFFQV-R---------IGFNL---EIGV-SVLVDKSLIVISNNNKI 375 (439)
Q Consensus 321 ~~~l~~Sy~~L~~~~k~~fl~la~f~~~-~---------~~~~~---~~~l-~~L~~~sLi~~~~~~~~ 375 (439)
...|.+-=.+|+...++.+..+.-.+.+ . -|... ++.+ --|+..+||+....|++
T Consensus 248 L~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~ 316 (332)
T COG2255 248 LKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhCCCcce
Confidence 3334443446777667776666554433 1 11111 1122 23899999998877764
No 88
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.10 E-value=5.5e-06 Score=83.74 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=97.2
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
.++.|.+..+++|.+.+.. +-...+.+.++|++|+|||+||+.+++.... |+ ....+.....+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~- 261 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG- 261 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH-
Confidence 5678999999999887642 1123567889999999999999999987654 32 1111111111100
Q ss_pred CCC-cHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHHhc--
Q 037205 180 AIP-GIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRNW-- 238 (439)
Q Consensus 180 ~~~-~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~-- 238 (439)
.. ....+.....+.+.+|+||+++... .+..++..+..+ ..+..||.||.....+...
T Consensus 262 -~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLl 340 (438)
T PTZ00361 262 -PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALI 340 (438)
T ss_pred -HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhc
Confidence 00 1112222234567899999974321 122222222211 2356788888755544332
Q ss_pred ---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205 239 ---GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 239 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 288 (439)
..+..++++..+.++..++|..+........ + -....++..+.|+--
T Consensus 341 RpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-d--vdl~~la~~t~g~sg 390 (438)
T PTZ00361 341 RPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-D--VDLEEFIMAKDELSG 390 (438)
T ss_pred cCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-C--cCHHHHHHhcCCCCH
Confidence 2456789999999999999987763322111 1 113455556655543
No 89
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.09 E-value=5.5e-05 Score=72.67 Aligned_cols=119 Identities=15% Similarity=0.160 Sum_probs=69.8
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHHHHHhcCCCCCCcHHHHHHHhc-cCCceEEecCCCCH-
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLISNLLKDENAIPGIDLNFRRLS-RMKVLIFFYDVTCF- 206 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll~~l~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~- 206 (439)
-+.++|++|+||||+|+.++..+.. |+ ....+...+.+.. ...+...+. ...-+|+||++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~-----~~~~~~~~~~a~~gvL~iDEi~~L~ 134 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT-----APKTKEILKRAMGGVLFIDEAYYLY 134 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc-----hHHHHHHHHHccCcEEEEechhhhc
Confidence 5789999999999999888776543 22 2223333222211 111222222 23468889999632
Q ss_pred ----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc--------CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 207 ----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW--------GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 207 ----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
+..+.|...+.....+.+||+++.....-..+ .....+.+++++.+|-.+++...+
T Consensus 135 ~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 135 RPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred cCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 22345555444344556777776543221111 124578999999999999988876
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.09 E-value=1.8e-05 Score=87.10 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=80.3
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH-----HHHHHHHHHh-cCCCCCC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL-----LATKLISNLL-KDENAIP 182 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-----~~~~ll~~l~-~~~~~~~ 182 (439)
..++||+.+++.+.+.|... ...-+.++|++|+|||++|..++..+.. ++ +.-.+ ..+. +....-.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~-~~l~ag~~~~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI-GLLLAGTKYRGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH-HHHhccCCCccH
Confidence 46899999999999999743 2334579999999999999999888652 11 00000 0111 1111001
Q ss_pred cHHHHHHH----hccCCceEEecCCCCHH---------HHHHHh-cCCCCCCCCcEEEEEeCchHHHHh-------cCCC
Q 037205 183 GIDLNFRR----LSRMKVLIFFYDVTCFS---------QLESLM-GSLDWLTPVSRIILTTRNKQVLRN-------WGVS 241 (439)
Q Consensus 183 ~~~~l~~~----l~~~~~LlVlDdv~~~~---------~~~~l~-~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~ 241 (439)
..+.++.. ...++.+|++|++.... ....++ +.+. .+ .-++|.+|..+..... ....
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf 333 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RG-ELQCIGATTLDEYRKHIEKDPALERRF 333 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CC-CcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence 11222222 23567899999994221 122222 2221 11 2345555544332111 1234
Q ss_pred eEEEcCCCCHHHHHHHHHH
Q 037205 242 KIYEMEALEYHHALELFSR 260 (439)
Q Consensus 242 ~~~~l~~L~~~ea~~Lf~~ 260 (439)
.++.++..+.++...++..
T Consensus 334 ~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 334 QPVYVGEPSVEETIEILFG 352 (821)
T ss_pred eEEecCCCCHHHHHHHHHH
Confidence 5788999999998888764
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=9.8e-05 Score=78.54 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=106.4
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC-------C
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN-------A 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~-------~ 180 (439)
.+++|.+..++.|...+..+ .-...+.++|++|+||||+|+.++..+-. +-.............. .
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 67899999999999988732 22456789999999999999998766421 0000000000000000 0
Q ss_pred -C--CcHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEE-EEeCchHHHHh-cCCCeEEEcCC
Q 037205 181 -I--PGIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRII-LTTRNKQVLRN-WGVSKIYEMEA 248 (439)
Q Consensus 181 -~--~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-iTTR~~~v~~~-~~~~~~~~l~~ 248 (439)
. +.++.+.+.+. +++-++|+|+++.. ..+.+|+..+........+| +||+...+... ......+++.+
T Consensus 97 n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~ 176 (725)
T PRK07133 97 NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRR 176 (725)
T ss_pred cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccC
Confidence 1 11233333333 45568899999643 44666666555434455555 45444444433 23346899999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHH
Q 037205 249 LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLG 294 (439)
Q Consensus 249 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g 294 (439)
++.++....+...+-..+... ..+.+..+++.++|-+- |+..+-
T Consensus 177 L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 177 ISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999988877653333211 24557789999988654 444443
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.05 E-value=0.00012 Score=65.96 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=86.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----------HHHHHHHHHHHh------cCCCCCCcHHHHH---HHh-----
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----------YLLATKLISNLL------KDENAIPGIDLNF---RRL----- 191 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~~~~~ll~~l~------~~~~~~~~~~~l~---~~l----- 191 (439)
...+.++|+.|+||||+|+.+...+.. ......+...-. .........+.++ +.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 367889999999999999998776521 000000000000 0000001223332 222
Q ss_pred ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCC
Q 037205 192 SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNH 267 (439)
Q Consensus 192 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 267 (439)
.+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. +
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--- 168 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--- 168 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---
Confidence 245668899999654 34566666665555667777777654 222221 23468999999999998888776 1
Q ss_pred CCcchHHHHHHHHHHhCCCcH
Q 037205 268 PDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 268 ~~~~~~~~~~~i~~~~~GlPL 288 (439)
.+ .+.+..+++.++|.|.
T Consensus 169 i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred CC---HHHHHHHHHHcCCCcc
Confidence 11 4568899999999885
No 93
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.0007 Score=71.02 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=108.2
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H----H-HHHHHHHHHhcCC-CC---C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y----L-LATKLISNLLKDE-NA---I 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f----~-~~~~ll~~l~~~~-~~---~ 181 (439)
-.+++|-+..++.|...+..+ .-...+.++|++|+||||+|+.+++.+-. . - ..-.....+.... .+ +
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~i 93 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEI 93 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEe
Confidence 367999999999999988742 23456889999999999999998877531 0 0 0000001111110 00 1
Q ss_pred -----CcHHHHHHHh--------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEE
Q 037205 182 -----PGIDLNFRRL--------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIY 244 (439)
Q Consensus 182 -----~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 244 (439)
..++.+++.. .+++-++|+|+++.. ..++.|+..+....+.+.+|++|.+ ..+.... .....+
T Consensus 94 dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~ 173 (563)
T PRK06647 94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHF 173 (563)
T ss_pred cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEE
Confidence 1233333322 245668999999654 3467777666654556666665543 3333322 234578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
++.+++.++..+.+.+.+....... ..+.+..|++.++|.+-.+
T Consensus 174 ~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 174 NFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 9999999999888887764433222 2566788999999987543
No 94
>PF14516 AAA_35: AAA-like domain
Probab=98.04 E-value=0.001 Score=65.41 Aligned_cols=259 Identities=12% Similarity=0.169 Sum_probs=138.7
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------------------HH--
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------------------YL-- 165 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------------------f~-- 165 (439)
.+....|.|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.+.... |.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 4556678898556666665542 2357899999999999999999887764 11
Q ss_pred HHHHHHHHHhcCCC-----------CCCcHHHHHHHh---ccCCceEEecCCCCHHH----HHHHhcCCC-C--------
Q 037205 166 LATKLISNLLKDEN-----------AIPGIDLNFRRL---SRMKVLIFFYDVTCFSQ----LESLMGSLD-W-------- 218 (439)
Q Consensus 166 ~~~~ll~~l~~~~~-----------~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----~~~l~~~~~-~-------- 218 (439)
+...+..++.-... .......+.+.+ .+++.+|+||+++..-. .+.+++.+. |
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 22333333221110 011223333332 25899999999964321 112222111 0
Q ss_pred -CCCCcEEEEEeCchHHHH-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205 219 -LTPVSRIILTTRNKQVLR-----NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV 292 (439)
Q Consensus 219 -~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 292 (439)
...-+-|++.+....... .++....++|++++.+|...|...+-.. .. ....+.+...++|+|.-+..
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHH
Confidence 011112222221111111 1234567899999999999998876422 11 23389999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHhcCCCccHHHHHHHhhcCC--CHHhHHHHhcccccccccCCCchhHHHHHHhhCCceEEc
Q 037205 293 LGCFLYKREKEVWESAINKLQRILYPSILEVLKISYDGL--DNKEKNIFLGVACFFQVRIGFNLEIGVSVLVDKSLIVIS 370 (439)
Q Consensus 293 ~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L--~~~~k~~fl~la~f~~~~~~~~~~~~l~~L~~~sLi~~~ 370 (439)
++..+...... .+..+..-.... .....-|+.-...| .++.+..+..+-.-.. .... .......|...|||...
T Consensus 239 ~~~~l~~~~~~-~~~l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~-~~~~-~~~~~~~L~~~GLV~~~ 314 (331)
T PF14516_consen 239 ACYLLVEEQIT-LEQLLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQILFSGE-PVDL-DSDDIYKLESLGLVKRD 314 (331)
T ss_pred HHHHHHHccCc-HHHHHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCC-Cccc-ChHHHHHHHHCCeEEEe
Confidence 99999653111 112222210000 01111222222333 2344555543332111 1122 23457889999999988
Q ss_pred cCCeEEec-HHHHH
Q 037205 371 NNNKITMH-DLLQE 383 (439)
Q Consensus 371 ~~~~~~mH-dlv~~ 383 (439)
+|.+.++ ++-+.
T Consensus 315 -~~~~~~~n~iY~~ 327 (331)
T PF14516_consen 315 -GNQLEVRNPIYRQ 327 (331)
T ss_pred -CCEEEEEcHHHHH
Confidence 6666555 34443
No 95
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.02 E-value=4.1e-05 Score=84.47 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=80.4
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCCC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDENA 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~~ 180 (439)
..++||+.++..+...|... ....+.++|.+|+|||++|..++.++.. .+ -...++ .+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~---a~~~~~ 247 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI---AGAKYR 247 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh---hcchhh
Confidence 56999999999999988743 2344568999999999999999887632 00 011111 011100
Q ss_pred CC---cHHHHHHHh-c-cCCceEEecCCCCHH---------HHHHHhcCCCCCCCC-cEEEEEeCchHHHH-------hc
Q 037205 181 IP---GIDLNFRRL-S-RMKVLIFFYDVTCFS---------QLESLMGSLDWLTPV-SRIILTTRNKQVLR-------NW 238 (439)
Q Consensus 181 ~~---~~~~l~~~l-~-~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IiiTTR~~~v~~-------~~ 238 (439)
-. ....+...+ . +++.+|++|++.... +...++.+.. ..| -++|-+|..+..-. ..
T Consensus 248 g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~ 325 (852)
T TIGR03346 248 GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALE 325 (852)
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHH
Confidence 01 112222222 2 368999999996432 1222222221 223 34444444332211 11
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHh
Q 037205 239 GVSKIYEMEALEYHHALELFSRH 261 (439)
Q Consensus 239 ~~~~~~~l~~L~~~ea~~Lf~~~ 261 (439)
....++.++.++.++...++...
T Consensus 326 rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 326 RRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred hcCCEEEeCCCCHHHHHHHHHHH
Confidence 23356789999999999988654
No 96
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=0.0002 Score=68.88 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=72.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH--------HH--HHHHHHHHHhcCCCCCCcHHHHHHHhc-cCCceEEecCCCCH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR--------YL--LATKLISNLLKDENAIPGIDLNFRRLS-RMKVLIFFYDVTCF 206 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~--~~~~ll~~l~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 206 (439)
..+.++|.+|+||||+|+.+++.... |+ ....+.....+... ......+. ...-+|+||+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~-----~~~~~~l~~a~ggVLfIDE~~~l 134 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTA-----PKTKEVLKKAMGGVLFIDEAYYL 134 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccch-----HHHHHHHHHccCCEEEEEccchh
Confidence 35789999999999999999876532 21 22233332222111 11122221 23458999999642
Q ss_pred -----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc--------CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205 207 -----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW--------GVSKIYEMEALEYHHALELFSRHAFK 264 (439)
Q Consensus 207 -----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~ 264 (439)
+..+.|...+.....+.+||+++........+ .....+.+++++.+|..+++...+-.
T Consensus 135 ~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 135 YKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred ccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 23455555444444556777777543321111 23567899999999999998887743
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=0.0001 Score=75.22 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=82.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------HHH----HHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------YLL----ATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF 206 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~----~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 206 (439)
...+.|+|.+|+|||+|++.+++.+.. |+. ...+...+... ..+.++..++ ..-+|++||+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~dvLiIDDiq~l 214 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSG-----EMQRFRQFYR-NVDALFIEDIEVF 214 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcc-----hHHHHHHHcc-cCCEEEEcchhhh
Confidence 356889999999999999999998753 332 22222222211 1233344333 3458888998532
Q ss_pred H----HHHHHhcCCCC-CCCCcEEEEEeCc-hHH--------HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcch
Q 037205 207 S----QLESLMGSLDW-LTPVSRIILTTRN-KQV--------LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGY 272 (439)
Q Consensus 207 ~----~~~~l~~~~~~-~~~gs~IiiTTR~-~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 272 (439)
. ..+.+...+.. ...|..||+||.. +.. ...+.....+++.+++.++-..++.+.+-.....- .
T Consensus 215 ~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l--~ 292 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRI--E 292 (445)
T ss_pred cCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 1 11222221110 1235578888854 222 22233346889999999999999988774432211 2
Q ss_pred HHHHHHHHHHhCCCc
Q 037205 273 EKLSSNVMKYVQGVP 287 (439)
Q Consensus 273 ~~~~~~i~~~~~GlP 287 (439)
.+...-++..+.+.-
T Consensus 293 ~evl~~la~~~~~di 307 (445)
T PRK12422 293 ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHhcCCCH
Confidence 455666666666543
No 98
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=9e-05 Score=77.32 Aligned_cols=151 Identities=14% Similarity=0.206 Sum_probs=88.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH--
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF-- 206 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-- 206 (439)
...+.|||..|+|||.|+..+++.... |+...+++..+...... .....+++.+.+ .=+|||||+...
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~-~~~~~f~~~y~~-~DLLlIDDIq~l~g 391 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD-GKGDSFRRRYRE-MDILLVDDIQFLED 391 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh-ccHHHHHHHhhc-CCEEEEehhccccC
Confidence 345899999999999999999987642 33223333222211000 122334444443 357888999532
Q ss_pred -HHH-HHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHH
Q 037205 207 -SQL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEK 274 (439)
Q Consensus 207 -~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 274 (439)
+.+ +.|+..+.. ...|..|||||... .+...+....++.+..++.+.-..++.+++....... .++
T Consensus 392 ke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l--~~e 469 (617)
T PRK14086 392 KESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNA--PPE 469 (617)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCC--CHH
Confidence 111 222222211 13456788888743 2233344567889999999999999998874433222 256
Q ss_pred HHHHHHHHhCCCcHHHH
Q 037205 275 LSSNVMKYVQGVPLALK 291 (439)
Q Consensus 275 ~~~~i~~~~~GlPLal~ 291 (439)
++.-|++.+.+..-.|.
T Consensus 470 Vi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 470 VLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHhccCCHHHHH
Confidence 67777777766644443
No 99
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00027 Score=72.88 Aligned_cols=176 Identities=16% Similarity=0.095 Sum_probs=104.1
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--HHHHHHHHHhcC-CCC---C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--LATKLISNLLKD-ENA---I 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--~~~~ll~~l~~~-~~~---~ 181 (439)
...++|-+..++.+.+.+..+. -...+.++|++|+||||+|+.++..+.. .- -...-...+... ..+ +
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3678999999999999887432 2456778999999999999998776421 00 000000011110 000 0
Q ss_pred -----CcH---HHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHh-cCCCeEE
Q 037205 182 -----PGI---DLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRN-WGVSKIY 244 (439)
Q Consensus 182 -----~~~---~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~ 244 (439)
.+. +.+..... +++-++|+|+++.. ...+.|+..+....+...+|++| +...+... ......+
T Consensus 94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i 173 (486)
T PRK14953 94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRF 173 (486)
T ss_pred eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEE
Confidence 122 33333332 45568999999644 34556665554444455555544 43333322 1234578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
++.+++.++....+...+-..+... ..+.+..+++.++|.+..+.
T Consensus 174 ~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 174 IFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999888887664333221 24567788889999766443
No 100
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.99 E-value=1.8e-05 Score=81.33 Aligned_cols=148 Identities=20% Similarity=0.346 Sum_probs=86.4
Q ss_pred CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HH--HHH
Q 037205 113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YL--LAT 168 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~--~~~ 168 (439)
-.++.|.+..++++...+.. +-...+-+.++|++|+|||++|+.+++.+.. |+ ...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 35688899999998886532 1123567899999999999999999988642 11 000
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHh-----ccCCceEEecCCCCHH--------------HHHHHhcCCCCCC--CCcEEEE
Q 037205 169 KLISNLLKDENAIPGIDLNFRRL-----SRMKVLIFFYDVTCFS--------------QLESLMGSLDWLT--PVSRIIL 227 (439)
Q Consensus 169 ~ll~~l~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~--~gs~Iii 227 (439)
.++....+.. ......+.+.. .+++++|+||+++..- .+..|+..+.... .+..||.
T Consensus 261 eLl~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ 338 (512)
T TIGR03689 261 ELLNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIG 338 (512)
T ss_pred hhcccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEe
Confidence 1111000000 00111122221 2468999999996321 1234443333222 3444555
Q ss_pred EeCchHHHHh-----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 228 TTRNKQVLRN-----WGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 228 TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
||..+..... ...+..++++..+.++..++|..+.
T Consensus 339 ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 339 ASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 6654433221 1345678999999999999998876
No 101
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00015 Score=75.04 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=107.4
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH--HHHHHHHHHh----c-
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YL--LATKLISNLL----K- 176 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~--~~~~ll~~l~----~- 176 (439)
-.++||-+...+.|...+..+. -.....++|++|+||||+|+.+++.+-. .. ....+..... .
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3679999999999998886332 2446689999999999999988776521 00 0000000000 0
Q ss_pred CCCCCCcHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEE
Q 037205 177 DENAIPGIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIY 244 (439)
Q Consensus 177 ~~~~~~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~ 244 (439)
......+++.+++... +++-++|+|+++.. +..++|+..+....+.+++|++|.++. +... ......+
T Consensus 92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~ 171 (535)
T PRK08451 92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHF 171 (535)
T ss_pred ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeE
Confidence 0000012344444332 34568899999654 345666665554456677777776542 2211 1234688
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
++.+++.++....+.+.+-..+... ..+.+..|++.++|.+.-+.
T Consensus 172 ~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 172 RFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHH
Confidence 9999999999988877664433222 25677889999999885443
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.96 E-value=3e-05 Score=85.33 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=79.7
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC-
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN- 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~- 179 (439)
..++||+.++..+.+.|... ....+.++|.+|+|||+||+.+...+.. .+ -...++. +...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a---g~~~~ 252 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA---GAKYR 252 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh---ccchh
Confidence 56999999999999988742 3345669999999999999999888632 00 0111110 0100
Q ss_pred -CCC-cHHHHHHHh--ccCCceEEecCCCCHH---------HHHHHhcCCCCCCCC-cEEEE-EeCchHHHHh-------
Q 037205 180 -AIP-GIDLNFRRL--SRMKVLIFFYDVTCFS---------QLESLMGSLDWLTPV-SRIIL-TTRNKQVLRN------- 237 (439)
Q Consensus 180 -~~~-~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~Iii-TTR~~~v~~~------- 237 (439)
... ....+...+ .+.+++|++|++.... +...++.+.. ..| -++|- ||.++ ....
T Consensus 253 g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e-~r~~~~~d~al 329 (857)
T PRK10865 253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDE-YRQYIEKDAAL 329 (857)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHH-HHHHhhhcHHH
Confidence 110 112222222 2468999999996432 1222322221 233 34554 44443 2111
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 238 WGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 238 ~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
......+.+...+.++...++....
T Consensus 330 ~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 330 ERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1123466788889999998886543
No 103
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=5.1e-05 Score=63.66 Aligned_cols=93 Identities=23% Similarity=0.260 Sum_probs=58.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----------HH----------HHHHHHHHHhcCCCC-CC---cHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----------YL----------LATKLISNLLKDENA-IP---GIDLNFRRL 191 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~----------~~~~ll~~l~~~~~~-~~---~~~~l~~~l 191 (439)
-+.+.|+|.+|+|||++++.+.+.... |+ +...++..+...... .. ..+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 467899999999999999999988642 11 556666666555443 22 446666666
Q ss_pred ccCCc-eEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCc
Q 037205 192 SRMKV-LIFFYDVTCF---SQLESLMGSLDWLTPVSRIILTTRN 231 (439)
Q Consensus 192 ~~~~~-LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 231 (439)
...+. +||+|+++.. ..++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66554 9999999765 33455543333 566777777664
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=0.00025 Score=66.89 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=105.8
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HHHHHHHHHHHhcC-CCCCC-----
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YLLATKLISNLLKD-ENAIP----- 182 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~~~~~ll~~l~~~-~~~~~----- 182 (439)
...+++|-+..+.-|.+.+.. ...+....||++|.|||+.|+.++..+-. |- ..++ .+... ...++
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~--~rvl-~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFP--CRVL-ELNASDERGISVVREK 108 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc--cchh-hhcccccccccchhhh
Confidence 346799999999999998874 56788999999999999999987766431 00 0000 00000 00111
Q ss_pred --cHHHHHHHhc---c---CC-ceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHH-HHhc-CCCeEEEcCCC
Q 037205 183 --GIDLNFRRLS---R---MK-VLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEAL 249 (439)
Q Consensus 183 --~~~~l~~~l~---~---~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~l~~L 249 (439)
....+.-... + .+ -.+|||+++.. +.|.+|......+...++.|+.+..-.. .... .....|..++|
T Consensus 109 ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 1111111110 0 22 47789999865 4588888777766777776654443322 1111 12356889999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 250 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
..++..+-+...+-.+...-+ .+..+.|++.++|--
T Consensus 189 ~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 189 KDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDL 224 (346)
T ss_pred chHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcH
Confidence 999999888888855543332 567888999998753
No 105
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.0002 Score=75.86 Aligned_cols=176 Identities=16% Similarity=0.133 Sum_probs=105.7
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-------HHHHHHHHHhcCC------
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-------LATKLISNLLKDE------ 178 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-------~~~~ll~~l~~~~------ 178 (439)
..++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-- .. -.-.....+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 678999999999999887432 2356789999999999999998877531 00 0000111111100
Q ss_pred --C-CCCcHHHHHHHh---c-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeE
Q 037205 179 --N-AIPGIDLNFRRL---S-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKI 243 (439)
Q Consensus 179 --~-~~~~~~~l~~~l---~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~ 243 (439)
. ....++.+++.+ . +++-++|+|+++.. .....|+..+......+.+|++|.+. .+.... .....
T Consensus 95 i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~ 174 (620)
T PRK14948 95 IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQR 174 (620)
T ss_pred EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeE
Confidence 0 111333333332 2 34568899999754 44666666655433455555555433 333332 23467
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHH
Q 037205 244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKV 292 (439)
Q Consensus 244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 292 (439)
+++..++.++....+.+.+-...... ..+.+..+++.++|.+..+..
T Consensus 175 ~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 175 FDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred EEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 88889999998887777664322211 145688899999998765433
No 106
>PRK12377 putative replication protein; Provisional
Probab=97.91 E-value=6.4e-05 Score=70.46 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=41.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV 203 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 203 (439)
...+.|+|.+|+|||+||.++++.+.. |+...+++..+............+.+.+ .+.-||||||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l-~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL-CKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh-cCCCEEEEcCC
Confidence 457889999999999999999998765 3323344444432211111112233333 35668999999
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00041 Score=72.93 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=103.3
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H-----HHHHHHHHHHhcC-CCC---C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y-----LLATKLISNLLKD-ENA---I 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f-----~~~~~ll~~l~~~-~~~---~ 181 (439)
..+++|.+...+.+.+.+..+. -...+.++|+.|+||||+|+.+...+-. . .-.-.....+... ..+ +
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei 93 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI 93 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence 3689999999999999887432 3456778999999999999998765421 0 0000001111111 001 1
Q ss_pred -----CcHHH---HHHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-CCCeEE
Q 037205 182 -----PGIDL---NFRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIY 244 (439)
Q Consensus 182 -----~~~~~---l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~ 244 (439)
..++. +.... .++.-++|+|+++.. .....|+..+........+|++| ....+.... .....+
T Consensus 94 daas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~ 173 (559)
T PRK05563 94 DAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRF 173 (559)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEE
Confidence 12333 33332 235568889999754 44666666554433455555444 433333322 234678
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
++.+++.++..+.+...+-..+... ..+.+..+++.++|.+..
T Consensus 174 ~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 174 DFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 8999999999888887764333222 145677888888887653
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00039 Score=73.35 Aligned_cols=179 Identities=15% Similarity=0.162 Sum_probs=105.0
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH-----HHHHHHHHHhcC-CCC---C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL-----LATKLISNLLKD-ENA---I 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~-----~~~~ll~~l~~~-~~~---~ 181 (439)
..++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-. .. ........+... ..+ +
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 367999999999999888632 22456789999999999999998776521 00 000000111110 000 1
Q ss_pred -----CcH---HHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CchHHHHhc-CCCeEE
Q 037205 182 -----PGI---DLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIY 244 (439)
Q Consensus 182 -----~~~---~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~ 244 (439)
..+ +.+...+. ++.-++|+|+++.. ...+.|+..+....+.+.+|++| ....+.... .....+
T Consensus 94 d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~ 173 (576)
T PRK14965 94 DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF 173 (576)
T ss_pred eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhh
Confidence 122 23333332 34457889999654 34556665554444566666544 444444332 234578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLG 294 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g 294 (439)
++.+++.++....+...+-..+... ..+.+..+++.++|.. .|+..+-
T Consensus 174 ~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 174 DFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999998887776653333222 2466778889998865 4555543
No 109
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.87 E-value=5.7e-05 Score=81.54 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=80.8
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HHHH-----HHHHHHHh-cCCC--CC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YLLA-----TKLISNLL-KDEN--AI 181 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~~~-----~~ll~~l~-~~~~--~~ 181 (439)
..++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.++..... +.+. ..-+..+. +... +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~ 263 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhH
Confidence 469999999999999887532 234568999999999999999877532 1100 00001111 1110 11
Q ss_pred C-cHHHHHHHh-ccCCceEEecCCCCH----------HHHHHHhcCCCCCCCC-cEEEEEeCchHHHHh-------cCCC
Q 037205 182 P-GIDLNFRRL-SRMKVLIFFYDVTCF----------SQLESLMGSLDWLTPV-SRIILTTRNKQVLRN-------WGVS 241 (439)
Q Consensus 182 ~-~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~g-s~IiiTTR~~~v~~~-------~~~~ 241 (439)
. ....+...+ +..+.+|++|+++.. .+...++.+.. ..| -++|-+|..+..... ....
T Consensus 264 e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~D~AL~rRF 341 (758)
T PRK11034 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALARRF 341 (758)
T ss_pred HHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHHhhccHHHHhhC
Confidence 1 122222223 346789999999532 12222222211 123 344444433322111 1233
Q ss_pred eEEEcCCCCHHHHHHHHHHh
Q 037205 242 KIYEMEALEYHHALELFSRH 261 (439)
Q Consensus 242 ~~~~l~~L~~~ea~~Lf~~~ 261 (439)
..+.+++++.++..+++...
T Consensus 342 q~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 342 QKIDITEPSIEETVQIINGL 361 (758)
T ss_pred cEEEeCCCCHHHHHHHHHHH
Confidence 57999999999999998754
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.0005 Score=68.34 Aligned_cols=152 Identities=20% Similarity=0.292 Sum_probs=96.9
Q ss_pred CCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHH------------------HHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISRYL------------------LATKL 170 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~------------------~~~~l 170 (439)
..+..++||+.++..+.+++.. +.+..+.+=|.|-+|.|||.+...++.+...|. +...+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3457899999999999998864 455678889999999999999999998887633 44555
Q ss_pred HHHHhcCCC----CCCcHHHHHHHhcc--CCceEEecCCCCHHH--HHHHhcCCCCC-CCCcEEEEEeCch------HHH
Q 037205 171 ISNLLKDEN----AIPGIDLNFRRLSR--MKVLIFFYDVTCFSQ--LESLMGSLDWL-TPVSRIILTTRNK------QVL 235 (439)
Q Consensus 171 l~~l~~~~~----~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IiiTTR~~------~v~ 235 (439)
.+.+..... ..+..+.+...... ..+|+|||..+.... -..|...+.|- -+++|+|+.--.. ..+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 555533222 22234445444444 358999999865431 11222222221 2566665432211 111
Q ss_pred Hhc-----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 236 RNW-----GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 236 ~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
... .....+..++-+.++-.++|....
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 211 123567788999999999998876
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0011 Score=70.44 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=104.6
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH--HHHHHHHHHhcC--C-----
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL--LATKLISNLLKD--E----- 178 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~--~~~~ll~~l~~~--~----- 178 (439)
.+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+...+.- .. -.-.-...+... .
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 67999999999999988732 12456889999999999999987776420 00 000000000000 0
Q ss_pred --CCCCcHHHHHHHh---c-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE-EeCchHHHHhc-CCCeEE
Q 037205 179 --NAIPGIDLNFRRL---S-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIIL-TTRNKQVLRNW-GVSKIY 244 (439)
Q Consensus 179 --~~~~~~~~l~~~l---~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~-~~~~~~ 244 (439)
.+....+.++..+ . +++-++|+|+++.. ...+.|+..+......+.+|+ ||....+.... .....+
T Consensus 96 d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv 175 (614)
T PRK14971 96 DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF 175 (614)
T ss_pred cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence 0001233333332 2 34558899999654 346666665554445666655 44544444432 345689
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
++.+++.++....+.+.+-..+... ..+.+..|+..++|..--
T Consensus 176 ~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 176 DFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRD 218 (614)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 9999999999988887664433222 245678889999986643
No 112
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.84 E-value=0.0005 Score=63.50 Aligned_cols=88 Identities=16% Similarity=0.297 Sum_probs=57.0
Q ss_pred CCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNF 188 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~~~~~~~~l~ 188 (439)
.....++|.+.+.+.|.+-... ......-+.+||..|.|||+|++++.+.+.. +=++-+.-...++.....+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-----~GLRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-----QGLRLIEVSKEDLGDLPELL 98 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-----cCceEEEECHHHhccHHHHH
Confidence 4557899999999888874321 2234566788999999999999999888653 00111111111222344455
Q ss_pred HHhc--cCCceEEecCC
Q 037205 189 RRLS--RMKVLIFFYDV 203 (439)
Q Consensus 189 ~~l~--~~~~LlVlDdv 203 (439)
..++ ..+++|.+||+
T Consensus 99 ~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 99 DLLRDRPYKFILFCDDL 115 (249)
T ss_pred HHHhcCCCCEEEEecCC
Confidence 5554 36899999999
No 113
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.82 E-value=5.6e-05 Score=63.31 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|+|++|+||||+|+.+++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999988753
No 114
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=97.81 E-value=4.1e-05 Score=65.20 Aligned_cols=70 Identities=29% Similarity=0.352 Sum_probs=58.3
Q ss_pred cccchHHHHHHHHhhhhc-CCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHh
Q 037205 4 CSLLIGLKLVLFHLTQKE-HAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAV 74 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~-~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~ 74 (439)
.|.||..|+..+.++... ....||||+|+..|+++..+.+.++.++..+..++.....+ ..|++++..++
T Consensus 68 ~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 68 ESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred cChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 589999999999998865 67899999999999999999999999998875555544333 68999887765
No 115
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.80 E-value=0.00032 Score=63.61 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=37.6
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.++||-+.-++.+.-.-. +.+.+-+.|.||||+||||-+..+++.+
T Consensus 26 l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3678999988888776655 3457788899999999999988877665
No 116
>PRK06526 transposase; Provisional
Probab=97.79 E-value=4.4e-05 Score=71.99 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=51.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCCH----
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTCF---- 206 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---- 206 (439)
..-+.|+|++|+|||+||..+...... |....+++..+......-.....+. .+. +.-|||+||+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~-~l~-~~dlLIIDD~g~~~~~~ 175 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV-KLG-RYPLLIVDEVGYIPFEP 175 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH-Hhc-cCCEEEEcccccCCCCH
Confidence 446889999999999999999877654 5444445555433221111122222 232 3568999999532
Q ss_pred HHHHHHhcCCCC-CCCCcEEEEEeCch
Q 037205 207 SQLESLMGSLDW-LTPVSRIILTTRNK 232 (439)
Q Consensus 207 ~~~~~l~~~~~~-~~~gs~IiiTTR~~ 232 (439)
...+.+...+.. ...++ +|+||..+
T Consensus 176 ~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 176 EAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred HHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 221222222211 12344 88888754
No 117
>PRK08116 hypothetical protein; Validated
Probab=97.78 E-value=3.1e-05 Score=73.73 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=54.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC--CCCcHHHHHHHhccCCceEEecCCCC--HH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN--AIPGIDLNFRRLSRMKVLIFFYDVTC--FS 207 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~--~~~~~~~l~~~l~~~~~LlVlDdv~~--~~ 207 (439)
..+.|+|.+|+|||.||.++++.+.. |+....++..+..... .......+.+.+.+-. ||||||+.. ..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg~e~~t 193 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLGAERDT 193 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEecccCCCCC
Confidence 45789999999999999999998764 3333444444432211 1112334445555444 899999932 11
Q ss_pred H--HHHHhcCCCC-CCCCcEEEEEeCch
Q 037205 208 Q--LESLMGSLDW-LTPVSRIILTTRNK 232 (439)
Q Consensus 208 ~--~~~l~~~~~~-~~~gs~IiiTTR~~ 232 (439)
. ...|...+.. ...+..+|+||...
T Consensus 194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 1 2223222211 23566789998743
No 118
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.77 E-value=7e-05 Score=76.95 Aligned_cols=175 Identities=15% Similarity=0.101 Sum_probs=94.2
Q ss_pred CCCcccccchHHHHHhhh---cc-----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCC
Q 037205 113 KSQLVGVESRVEEIESLL---SV-----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAI 181 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L---~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~ 181 (439)
..++-|.+...+.+.+.. .. +-...+-|.++|++|+|||.+|+.+++.... |+ -...+.....+... .
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese-~ 305 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESE-S 305 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHH-H
Confidence 356778776666555422 11 1234567899999999999999999988654 21 11111111111100 0
Q ss_pred CcHHHHHHHhccCCceEEecCCCCHH--------------HHHHHhcCCCCCCCCcEEEEEeCchHHHH-----hcCCCe
Q 037205 182 PGIDLNFRRLSRMKVLIFFYDVTCFS--------------QLESLMGSLDWLTPVSRIILTTRNKQVLR-----NWGVSK 242 (439)
Q Consensus 182 ~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-----~~~~~~ 242 (439)
...+.+...-...+++|++|+++..- .+..++..+.....+--||.||.+..... ....+.
T Consensus 306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~ 385 (489)
T CHL00195 306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDE 385 (489)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCe
Confidence 01122222223578999999996321 01222222222223344566776554322 123567
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 243 IYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
.+.++..+.++-.++|..+..+.. +..........+++.+.|.-=|
T Consensus 386 ~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 386 IFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCHH
Confidence 888999999999999988764322 1110112245677777766443
No 119
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.74 E-value=0.00033 Score=65.55 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCC-CCCcHHHHHHHhccCC
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDEN-AIPGIDLNFRRLSRMK 195 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~ 195 (439)
+..+.+....-......+.++|.+|+|||+||..+++.+.. |+...+++..+..... .......+.+.+. +.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~ 163 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-NV 163 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-cC
Confidence 34444444322223457889999999999999999998754 3323333333322211 1112233444555 45
Q ss_pred ceEEecCCC
Q 037205 196 VLIFFYDVT 204 (439)
Q Consensus 196 ~LlVlDdv~ 204 (439)
=+|||||+.
T Consensus 164 dlLvIDDig 172 (244)
T PRK07952 164 DLLVIDEIG 172 (244)
T ss_pred CEEEEeCCC
Confidence 588889994
No 120
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.72 E-value=0.00015 Score=79.05 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
-.++.|.+...+.|.+.+.. +-...+-+.++|++|+|||+||+.+++.... |+ ...++++...+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGes 531 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGES 531 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcH
Confidence 35678888887777775531 1123456889999999999999999987654 32 1112222111110
Q ss_pred CCCCcHHHH-HHHhccCCceEEecCCCCH--------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh----
Q 037205 179 NAIPGIDLN-FRRLSRMKVLIFFYDVTCF--------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN---- 237 (439)
Q Consensus 179 ~~~~~~~~l-~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~---- 237 (439)
...+..+ ...-...+.+|+||+++.. ..+..|+..+... ..+--||.||..+.....
T Consensus 532 --e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allR 609 (733)
T TIGR01243 532 --EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLR 609 (733)
T ss_pred --HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcC
Confidence 0012222 2222356789999998532 1133344333321 233445667765543322
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
-..+..+.++..+.++-.++|..+.-+... .+ ......+++.+.|.-
T Consensus 610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~--~~~l~~la~~t~g~s 657 (733)
T TIGR01243 610 PGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AE--DVDLEELAEMTEGYT 657 (733)
T ss_pred CCccceEEEeCCcCHHHHHHHHHHHhcCCCC-Cc--cCCHHHHHHHcCCCC
Confidence 134678889999999999998766522221 11 111456667777764
No 121
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=0.0004 Score=73.38 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=42.3
Q ss_pred CCCCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 112 NKSQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...+++|-+..++++..++... ....+++.|+|++|+||||+++.++..+..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3477999999999999988642 233567999999999999999999877653
No 122
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.69 E-value=0.00011 Score=80.03 Aligned_cols=172 Identities=13% Similarity=0.184 Sum_probs=92.7
Q ss_pred CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
.-.++.|.+..++.|.+.+.. +-...+.|.++|++|+|||+||+.+++.... |+ ....+.....+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~ 255 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGE 255 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccH
Confidence 345688999999998887632 1123467889999999999999999887654 21 111111110000
Q ss_pred CCCCCcHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCCC-CCCcEEEE-EeCchHHH-Hhc---
Q 037205 178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDWL-TPVSRIIL-TTRNKQVL-RNW--- 238 (439)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~-~~gs~Iii-TTR~~~v~-~~~--- 238 (439)
. .......+.......+.+|+||+++.. .....|...+... ..+..++| ||....-. ..+
T Consensus 256 ~-~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~ 334 (733)
T TIGR01243 256 S-EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRP 334 (733)
T ss_pred H-HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCc
Confidence 0 000112223333456789999998532 1123333333222 22333444 55433211 111
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 239 -GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 239 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
.....+.++..+.++-.+++..+.-.... .+ ......+++.+.|..
T Consensus 335 gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 335 GRFDREIVIRVPDKRARKEILKVHTRNMPL-AE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred hhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc--ccCHHHHHHhCCCCC
Confidence 23456788888888888888755422111 11 122566777777764
No 123
>PRK08181 transposase; Validated
Probab=97.68 E-value=5.4e-05 Score=71.85 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=51.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCC----HH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTC----FS 207 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----~~ 207 (439)
.-+.++|++|+|||.||..+.+.... |+...+++..+.....+. ......+.+. +.-||||||+.. ..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~-~~~~~l~~l~-~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARREL-QLESAIAKLD-KFDLLILDDLAYVTKDQA 184 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCC-cHHHHHHHHh-cCCEEEEeccccccCCHH
Confidence 45889999999999999999877654 444444555443322211 1222223332 445999999942 12
Q ss_pred HHHHHhcCCCCCCCCcEEEEEeCch
Q 037205 208 QLESLMGSLDWLTPVSRIILTTRNK 232 (439)
Q Consensus 208 ~~~~l~~~~~~~~~gs~IiiTTR~~ 232 (439)
..+.|...+...-.+..+||||..+
T Consensus 185 ~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 185 ETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 1222322222111123588888754
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.0017 Score=70.76 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=62.0
Q ss_pred CCCcccccchHHHHHhhhccC------CC-CeeEEEEecCCCChhHHHHHHHHhHHhH-HH-------HHHHHHHHHhcC
Q 037205 113 KSQLVGVESRVEEIESLLSVE------SK-DVYALGIWGIGGIGKTTIARATFDKISR-YL-------LATKLISNLLKD 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-------~~~~ll~~l~~~ 177 (439)
...++|.+..++.+.+.+... .+ ...++.++|++|+|||+||+.++..+.. ++ ....-...+.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~ 532 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGA 532 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcC
Confidence 356889998888888876531 11 2446889999999999999999887643 11 111122333333
Q ss_pred CC---CCCcHHHHHHHhccCC-ceEEecCCCCH--HHHHHHhcCC
Q 037205 178 EN---AIPGIDLNFRRLSRMK-VLIFFYDVTCF--SQLESLMGSL 216 (439)
Q Consensus 178 ~~---~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~ 216 (439)
.. ..+....+.+.++.++ -+++||+++.. +....|+..+
T Consensus 533 ~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 533 PPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred CCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 22 1112233455555444 59999999643 3344444443
No 125
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0011 Score=64.95 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=88.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHHHh-------cCCCCCC-cHHHHHHH---hc--
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISNLL-------KDENAIP-GIDLNFRR---LS-- 192 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~l~-------~~~~~~~-~~~~l~~~---l~-- 192 (439)
...+.++|+.|+||||+|+.++..+-- -- ....+...-. ....... .++.+++. +.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 557889999999999999988766420 00 0000000000 0000000 23334332 22
Q ss_pred ---cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcC
Q 037205 193 ---RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSRHAFKR 265 (439)
Q Consensus 193 ---~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 265 (439)
+++-++|+|+++. .+....|+..+..-..++.+|+||.+.. +.... .....+.+.+++.+++.+.+.... ..
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~ 180 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE 180 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc
Confidence 3344567799974 4456666665554446777777777653 33332 234678999999999998887643 11
Q ss_pred CCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 266 NHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
...+.+..++..++|.|+....+
T Consensus 181 -----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11344567789999999765444
No 126
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00015 Score=75.47 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=88.3
Q ss_pred CCCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH------HHHHHHHHHhcCCC--
Q 037205 113 KSQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL------LATKLISNLLKDEN-- 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~------~~~~ll~~l~~~~~-- 179 (439)
+.+-.|.+...+.|.+.|.- ..-+-++++++|+||+|||+|++.++.-+.. |+ +..+ ..+.+...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE--AEIRGHRRTY 399 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE--AEIRGHRRTY 399 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH--HHhccccccc
Confidence 35568999999999998853 2334589999999999999999999987655 44 0000 01111111
Q ss_pred --CCC--cHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCC-----CC--------CCcEEE-EEeCch-H-
Q 037205 180 --AIP--GIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDW-----LT--------PVSRII-LTTRNK-Q- 233 (439)
Q Consensus 180 --~~~--~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~-----~~--------~gs~Ii-iTTR~~-~- 233 (439)
..+ .++. ......++-|++||.++.... ..+|+..+.. |. .=|.|+ |||-|. .
T Consensus 400 IGamPGrIiQ~-mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t 478 (782)
T COG0466 400 IGAMPGKIIQG-MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT 478 (782)
T ss_pred cccCChHHHHH-HHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence 111 1122 223345788999999964321 2333333221 10 114554 555543 1
Q ss_pred -HHHhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205 234 -VLRNWGVSKIYEMEALEYHHALELFSRHAF 263 (439)
Q Consensus 234 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 263 (439)
..+.+....++++.+-+++|-.++-.++..
T Consensus 479 IP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 479 IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred CChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 123344568999999999999888777653
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00045 Score=67.02 Aligned_cols=149 Identities=21% Similarity=0.329 Sum_probs=89.8
Q ss_pred CCCcccccchHHHHHhhhccCCCCee-EEEEecCCCChhHHHHHHHHhHHhH---HH----------HHHHHHHHHhc-C
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVY-ALGIWGIGGIGKTTIARATFDKISR---YL----------LATKLISNLLK-D 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~---f~----------~~~~ll~~l~~-~ 177 (439)
.+.+.+|+.++..+..++...+...+ .|-|+|-.|.|||.+.+++++.... |+ +...++.+... .
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCC
Confidence 45788999999999999986555444 4589999999999999999988733 54 55666666641 1
Q ss_pred CC--CCC--------cHHHHHH--Hhc--cCCceEEecCCCCHHHHH-----HHhcCCCCCCCCcEEEEEeCch---HHH
Q 037205 178 EN--AIP--------GIDLNFR--RLS--RMKVLIFFYDVTCFSQLE-----SLMGSLDWLTPVSRIILTTRNK---QVL 235 (439)
Q Consensus 178 ~~--~~~--------~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~-----~l~~~~~~~~~gs~IiiTTR~~---~v~ 235 (439)
.+ ... .+..+.+ ... ++.++|||||++...+.+ .+.....-.....-.|+++-.. ...
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh
Confidence 11 111 1222222 222 358999999997655422 2211110011222334444322 222
Q ss_pred HhcCCCe--EEEcCCCCHHHHHHHHHHh
Q 037205 236 RNWGVSK--IYEMEALEYHHALELFSRH 261 (439)
Q Consensus 236 ~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 261 (439)
..+|+.. ++..+.-+.+|..+++.+.
T Consensus 165 ~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 165 INTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2245443 4567888999998888654
No 128
>PRK09183 transposase/IS protein; Provisional
Probab=97.57 E-value=7.3e-05 Score=70.81 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=48.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCCC----HH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVTC----FS 207 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----~~ 207 (439)
..+.|+|++|+|||+||..+++.... |+....++..+......- .............-++|+||+.. .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~-~~~~~~~~~~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQG-RYKTTLQRGVMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCC-cHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence 46779999999999999999776433 332233333322111111 11112222123556999999952 22
Q ss_pred HHHHHhcCCCC-CCCCcEEEEEeCch
Q 037205 208 QLESLMGSLDW-LTPVSRIILTTRNK 232 (439)
Q Consensus 208 ~~~~l~~~~~~-~~~gs~IiiTTR~~ 232 (439)
..+.|...+.. ...++ +|+||...
T Consensus 182 ~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 182 EANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred HHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 22223332211 12344 78888743
No 129
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.57 E-value=3.6e-05 Score=68.63 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT 204 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 204 (439)
.-+.++|.+|+|||.||..+.+.... |+...+++..+.....+. ....+.+.+. +.=||||||+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~-~~~~~~~~l~-~~dlLilDDlG 118 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDG-SYEELLKRLK-RVDLLILDDLG 118 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCT-THCHHHHHHH-TSSCEEEETCT
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccccccc-chhhhcCccc-cccEecccccc
Confidence 45889999999999999999887665 545556666665443222 2333344444 34678899994
No 130
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.00094 Score=66.49 Aligned_cols=123 Identities=19% Similarity=0.264 Sum_probs=77.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCC
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDV 203 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 203 (439)
....+.|||..|.|||.|++++.+.... ++ ....+...+.. +..+..++.. .-=++++||+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~-----~~~~~Fk~~y--~~dlllIDDi 184 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD-----NEMEKFKEKY--SLDLLLIDDI 184 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh-----hhHHHHHHhh--ccCeeeechH
Confidence 4678999999999999999999998765 22 12222233222 1334455555 3447888999
Q ss_pred CCH----HHHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcC
Q 037205 204 TCF----SQLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKR 265 (439)
Q Consensus 204 ~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 265 (439)
+-. ..-+.+...+.. ...|..||+|++.. .+...+...-++.+.+++.+....++.+.+...
T Consensus 185 q~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 185 QFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred hHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 431 112222222221 13455899999632 334444556789999999999999999876443
No 131
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.53 E-value=0.014 Score=58.13 Aligned_cols=105 Identities=8% Similarity=0.011 Sum_probs=70.3
Q ss_pred CCceEEecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc------CCCeEEEcCCCCHHHHHH
Q 037205 194 MKVLIFFYDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW------GVSKIYEMEALEYHHALE 256 (439)
Q Consensus 194 ~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~ 256 (439)
++-++|+||+... .+|.+.+.. .+-.+||++|-+......+ .+...+.|...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3679999999321 124333322 3446888888766544332 345678899999999999
Q ss_pred HHHHhhhcCCCC------------------CcchHHHHHHHHHHhCCCcHHHHHHHHhhcC-CCH
Q 037205 257 LFSRHAFKRNHP------------------DVGYEKLSSNVMKYVQGVPLALKVLGCFLYK-REK 302 (439)
Q Consensus 257 Lf~~~a~~~~~~------------------~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~ 302 (439)
+...+.-..... ......-....+...||=-.-|..+++.++. .++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 998877432110 0124455778888899999999999999975 443
No 132
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0013 Score=67.94 Aligned_cols=169 Identities=18% Similarity=0.280 Sum_probs=93.6
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
+++=|.++...+|.+...- +.+..+-|.+||+||+|||++|+.+++.... |+ -..++++...++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSE 513 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESE 513 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchH
Confidence 3444566666666643321 2356788999999999999999999998765 43 11222222222110
Q ss_pred CCCcHHHHHH-HhccCCceEEecCCCCHH-------------HHHHHhcCCCCCCCCcEEEE---EeCchHHHHh-c---
Q 037205 180 AIPGIDLNFR-RLSRMKVLIFFYDVTCFS-------------QLESLMGSLDWLTPVSRIIL---TTRNKQVLRN-W--- 238 (439)
Q Consensus 180 ~~~~~~~l~~-~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~Iii---TTR~~~v~~~-~--- 238 (439)
..+..+.+ .=..-+.+|.||.++... .+..|+..++.......|+| |.|...+-.. +
T Consensus 514 --r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 514 --RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred --HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 01111111 112356888999885321 24555555554433333433 4453333222 1
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 239 GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 239 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
..+..+.++..+.+--.++|..++-+-..... -...++++.+.|.-
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 35678888888888889999988843332221 12445555555553
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.46 E-value=0.0028 Score=70.17 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCcccccchHHHHHhhhccC------CC-CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHH
Q 037205 113 KSQLVGVESRVEEIESLLSVE------SK-DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNL 174 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l 174 (439)
...++|.+..++.+...+... .+ ...++.++|++|+|||++|+.+...... |+ ........+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHh
Confidence 356899999999999887531 11 2457889999999999999999876532 22 111122333
Q ss_pred hcCCCCC---CcHHHHHHHhccCC-ceEEecCCCCH--HHHHHHhcCCCCC-----------CCCcEEEEEeCc
Q 037205 175 LKDENAI---PGIDLNFRRLSRMK-VLIFFYDVTCF--SQLESLMGSLDWL-----------TPVSRIILTTRN 231 (439)
Q Consensus 175 ~~~~~~~---~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~IiiTTR~ 231 (439)
.+..+.. .....+...++.++ .+|+||+++.. +.+..|+..+... ..++-||+||.-
T Consensus 644 ~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 644 IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 3332211 11223444444444 48899999643 3445444433211 123457788774
No 134
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.45 E-value=0.00064 Score=66.44 Aligned_cols=148 Identities=22% Similarity=0.204 Sum_probs=78.0
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC-CCC-cHHHHHHH--hccCCceEEecCCCCH-
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN-AIP-GIDLNFRR--LSRMKVLIFFYDVTCF- 206 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~-~~~-~~~~l~~~--l~~~~~LlVlDdv~~~- 206 (439)
...+.++|||++|+|||.+|+.+++.... |+ ...++.+...++.. .+. ......+. -++++++|++|+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 45789999999999999999999998765 32 11222222211111 000 01111111 1457899999998521
Q ss_pred -----------HHH--HHHhcCCC--------------CCCCCcEEEEEeCchHHHHhc-----CCCeEEEcCCCCHHHH
Q 037205 207 -----------SQL--ESLMGSLD--------------WLTPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHA 254 (439)
Q Consensus 207 -----------~~~--~~l~~~~~--------------~~~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea 254 (439)
.+. ..|+.... ...++-.||+||..+..+... ..+..| ...+.++-
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R 303 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDR 303 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHH
Confidence 111 23332111 123456778888766543221 122333 34566666
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205 255 LELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 255 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 288 (439)
.+++..+. +....+ .....++++...|=|+
T Consensus 304 ~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 304 IGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 66666554 333322 2445566666666654
No 135
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.00029 Score=70.97 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=71.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhHH-HHHHHHHHHHhcCCCC---CCcHHHHHHHh---ccCCceEEecCCCCHHHHHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISRY-LLATKLISNLLKDENA---IPGIDLNFRRL---SRMKVLIFFYDVTCFSQLES 211 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~f-~~~~~ll~~l~~~~~~---~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~ 211 (439)
++.|+|+-++||||+++.+....... + .+...+.. ....+.++... ..++.+|+||.|.....|+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~i-------y~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~ 111 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEII-------YINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWER 111 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceE-------EEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHH
Confidence 99999999999999996655544220 0 00000000 00111122111 12668999999999998887
Q ss_pred HhcCCCCCCCCcEEEEEeCchHHHHh------cCCCeEEEcCCCCHHHHHHHH
Q 037205 212 LMGSLDWLTPVSRIILTTRNKQVLRN------WGVSKIYEMEALEYHHALELF 258 (439)
Q Consensus 212 l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf 258 (439)
....+...++. +|++|+-+...... .|....+++-||+..|-..+-
T Consensus 112 ~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 112 ALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred HHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 77766655555 88888876655332 245678899999999987643
No 136
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0066 Score=59.14 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=102.4
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------------------HHHH-----
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------------------YLLA----- 167 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------f~~~----- 167 (439)
.+++|-+...+.+.+.+..+. -.....++|+.|+||+++|..+++.+-. |+-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468999999999999887321 2478899999999999999988766421 0000
Q ss_pred HHH-----HHHHhcCCC---CCC--cHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-
Q 037205 168 TKL-----ISNLLKDEN---AIP--GIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTT- 229 (439)
Q Consensus 168 ~~l-----l~~l~~~~~---~~~--~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT- 229 (439)
... ......... .+. .++.+.+.+. +.+-++|+|+++.. ....+|+..+.... .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 000 000000000 111 2233433333 45668888998644 34555555554333 34555544
Q ss_pred CchHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 230 RNKQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 230 R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
....+.... .....+++.+++.++..+.+....... ........++..++|.|.....+
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHH
Confidence 444444433 345788999999999999988764211 11112467899999999765543
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.38 E-value=0.0019 Score=71.35 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCcccccchHHHHHhhhccC------CC-CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHH
Q 037205 113 KSQLVGVESRVEEIESLLSVE------SK-DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNL 174 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l 174 (439)
...++|.+..++.+...+... .+ ...++.++|++|+|||+||+.+++.... |+ ........+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 356899999999888877531 11 2357889999999999999999876532 22 112223334
Q ss_pred hcCCCCCC---cHHHHHHHhccC-CceEEecCCC--CHHHHHHHhcC
Q 037205 175 LKDENAIP---GIDLNFRRLSRM-KVLIFFYDVT--CFSQLESLMGS 215 (439)
Q Consensus 175 ~~~~~~~~---~~~~l~~~l~~~-~~LlVlDdv~--~~~~~~~l~~~ 215 (439)
.+..+... ....+...++.+ .-+|+||+++ +.+.+..|+..
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~i 693 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQV 693 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHH
Confidence 43332211 112334444333 3689999996 34445555443
No 138
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00087 Score=68.63 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=89.3
Q ss_pred CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
...++=|.+..+.++.+++.. +-...+-|.++|++|+|||.||+++++.+.. |+ ...++++.+.+..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence 346778899999999887643 1134678899999999999999999999877 54 3444555444332
Q ss_pred CCCCcHHHHHHHhccCCceEEecCCCCH-----------H--HHHHHhcCCCC------CCCCcEEE-EEeCchHHHHhc
Q 037205 179 NAIPGIDLNFRRLSRMKVLIFFYDVTCF-----------S--QLESLMGSLDW------LTPVSRII-LTTRNKQVLRNW 238 (439)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~--~~~~l~~~~~~------~~~gs~Ii-iTTR~~~v~~~~ 238 (439)
. ....+...+.-..-++++++|+++-. + -..+|+..... .+.+--|| .|+|-..+-..+
T Consensus 268 E-kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL 346 (802)
T KOG0733|consen 268 E-KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL 346 (802)
T ss_pred H-HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHH
Confidence 1 00222233334567899999999521 0 13344433322 12232333 255644332222
Q ss_pred ----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 239 ----GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 239 ----~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
..+..+.+.-.++..=.+++...+
T Consensus 347 RRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 347 RRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred hccccccceeeecCCchHHHHHHHHHHH
Confidence 245667777667666666665554
No 139
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0015 Score=69.39 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=106.3
Q ss_pred CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
.-.++.|-|+..++|++.... +..-++=+.|+|+||.|||-||++++-.... |+ ...++..-..+..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence 346788988877777765432 1122677899999999999999999988765 33 2222222222211
Q ss_pred CCCCcH-HHHHHHhccCCceEEecCCCC-----------------HHHHHHHhcCCCCCCCCcEEE--EEeCchHHHHh-
Q 037205 179 NAIPGI-DLNFRRLSRMKVLIFFYDVTC-----------------FSQLESLMGSLDWLTPVSRII--LTTRNKQVLRN- 237 (439)
Q Consensus 179 ~~~~~~-~~l~~~l~~~~~LlVlDdv~~-----------------~~~~~~l~~~~~~~~~gs~Ii--iTTR~~~v~~~- 237 (439)
...+ +.....-.+.++++.+|+++. ...+.+|+...+.+..++.|| -+|....++..
T Consensus 389 --asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~a 466 (774)
T KOG0731|consen 389 --ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPA 466 (774)
T ss_pred --hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHH
Confidence 0011 112222234677888887742 123667776666565554333 35554444332
Q ss_pred ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
-..+..+.++..+...-.++|.-++-..... .+..++++ ++...-|++=|
T Consensus 467 llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 467 LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 2355678888889999999999888444332 34456666 88888888766
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0012 Score=70.42 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCcccccchHHHHHhhhcc-------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HH----HHHHHHHHHh
Q 037205 114 SQLVGVESRVEEIESLLSV-------ESKDVYALGIWGIGGIGKTTIARATFDKISR-------YL----LATKLISNLL 175 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~----~~~~ll~~l~ 175 (439)
..++|-+..+..+.+.+.. .+....+....|+.|||||-||++++..+.. |- .-..-.+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence 5689999999888887643 2233678888999999999999999887753 11 4455566676
Q ss_pred cCCCC---CCcHHHHHHHhccCCc-eEEecCCC--CHHHHHHHhcCCCCC----C-------CCcEEEEEeC
Q 037205 176 KDENA---IPGIDLNFRRLSRMKV-LIFFYDVT--CFSQLESLMGSLDWL----T-------PVSRIILTTR 230 (439)
Q Consensus 176 ~~~~~---~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~IiiTTR 230 (439)
+..+. .+.-..+.+..+.++| ++.||++. +.+-++-|+..+..+ + .++-||.||.
T Consensus 571 GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 571 GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred CCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 66663 2344556777788887 77789996 445556565554432 1 2355677775
No 141
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.31 E-value=0.00019 Score=59.33 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|+|.|++|+||||+|+.+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999988753
No 142
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0018 Score=59.83 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=99.3
Q ss_pred CCCcccccchHHH---HHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCC
Q 037205 113 KSQLVGVESRVEE---IESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIP 182 (439)
Q Consensus 113 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~ 182 (439)
.++.||.+..... |.+.|.. +....+-|..+|++|.|||-+|+++++.... |+ -..+++..-.+.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd----- 194 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD----- 194 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh-----
Confidence 3668898765543 4455542 2345789999999999999999999999876 33 222222222111
Q ss_pred cHHHHH----HHhccCCceEEecCCCCH--------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHhc---C
Q 037205 183 GIDLNF----RRLSRMKVLIFFYDVTCF--------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRNW---G 239 (439)
Q Consensus 183 ~~~~l~----~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~---~ 239 (439)
+...++ +.-+.-++.+.+|.++-. +...+|+..+... +.|-.-|..|.++..+... .
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence 122222 222346899999988531 2245666555433 3455556666655554332 2
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC
Q 037205 240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV 286 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 286 (439)
....++....+.+|-.+++..++-.-..+. ..-.+.++.+++|+
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM 318 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence 345677777789999999998883322222 12255667777665
No 143
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.27 E-value=0.0014 Score=71.78 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=80.0
Q ss_pred CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-H-HH--HHHHHHhcCCCC----
Q 037205 114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL-L-AT--KLISNLLKDENA---- 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-~-~~--~ll~~l~~~~~~---- 180 (439)
...+|.+...+.|.+++.. .....+++.++|++|+|||++|+.+++.+.. |+ + .. .-...+.+....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence 4578888888888876532 2223457999999999999999999988754 22 0 00 001122211110
Q ss_pred CC--cHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCC-----C----------CCCcEEEEEeCchHHHH-
Q 037205 181 IP--GIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDW-----L----------TPVSRIILTTRNKQVLR- 236 (439)
Q Consensus 181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~-----~----------~~gs~IiiTTR~~~v~~- 236 (439)
.. ..+.+... ...+-+++||+++.... ...|+..+.. + ..+.-+|.||.......
T Consensus 400 ~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 400 MPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred CCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 01 12222222 23445788999964421 1222222210 0 01233344554332111
Q ss_pred -hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 237 -NWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 237 -~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
.......+++++++.++-.+++.++.
T Consensus 479 ~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 479 PLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 11234678999999998888886654
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.25 E-value=0.0053 Score=66.99 Aligned_cols=149 Identities=17% Similarity=0.243 Sum_probs=83.0
Q ss_pred CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-HH-H--HHHHHHhcCCC----C
Q 037205 114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL-LA-T--KLISNLLKDEN----A 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-~~-~--~ll~~l~~~~~----~ 180 (439)
.+.+|.+...+.|.++|.. ......++.++|++|+||||+|+.++..... |+ +. . .-...+.+... .
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~ 401 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGS 401 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCC
Confidence 5689999999999887763 2234568999999999999999999876543 21 00 0 00011111111 1
Q ss_pred CC--cHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCC--------------CC-CCcEEEEEeCchHHHHh
Q 037205 181 IP--GIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDW--------------LT-PVSRIILTTRNKQVLRN 237 (439)
Q Consensus 181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~--------------~~-~gs~IiiTTR~~~v~~~ 237 (439)
.. ..+.+.. ....+-+++||.++.... ...|+..+.. +. .+.-+|.||....+...
T Consensus 402 ~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~a 480 (784)
T PRK10787 402 MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP 480 (784)
T ss_pred CCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHH
Confidence 11 1122222 222455788999954321 2344433321 01 22333445543322111
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205 238 -WGVSKIYEMEALEYHHALELFSRHAF 263 (439)
Q Consensus 238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~ 263 (439)
.+...++++.+++.+|-.++..++..
T Consensus 481 Ll~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 481 LLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred HhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 12346789999999999888877663
No 145
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0028 Score=67.84 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=82.0
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH-----HHHHHHHHHhcCCC--CC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL-----LATKLISNLLKDEN--AI 181 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-----~~~~ll~~l~~~~~--~~ 181 (439)
+..+||+.+++.+.+.|.....+-+ .++|.+|+|||+++.-++.++.. ++ +.-.+..-+.+... ++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 5689999999999999975322222 36899999999999998888754 22 00111111111111 11
Q ss_pred C--cHHHHHHHhccCCceEEecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCchHH------HHhcCCCe
Q 037205 182 P--GIDLNFRRLSRMKVLIFFYDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQV------LRNWGVSK 242 (439)
Q Consensus 182 ~--~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v------~~~~~~~~ 242 (439)
. ....+.+.-+..++.|++|.+... +.-.-|.+.+. .+.--.|-.||-++.- +......+
T Consensus 248 EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ 326 (786)
T COG0542 248 EERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLDEYRKYIEKDAALERRFQ 326 (786)
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHHHHHHHhhhchHHHhcCc
Confidence 1 122222223345899999998421 12222223322 1222234467765532 11113457
Q ss_pred EEEcCCCCHHHHHHHHHH
Q 037205 243 IYEMEALEYHHALELFSR 260 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~ 260 (439)
++.|.+.+.+++...+.-
T Consensus 327 ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 327 KVLVDEPSVEDTIAILRG 344 (786)
T ss_pred eeeCCCCCHHHHHHHHHH
Confidence 889999999999988853
No 146
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.011 Score=57.46 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=93.2
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HHHHHHHHHHHh----------cCCCC----C
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-------YLLATKLISNLL----------KDENA----I 181 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~~~~~ll~~l~----------~~~~~----~ 181 (439)
.+.+...+..+ .-...+.++|+.|+||+++|..+++.+-- ..-..+++..-. ..... .
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~ 91 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRT 91 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccc
Confidence 44455554421 12446889999999999999988765421 000000000000 00000 0
Q ss_pred C-cHHHHHHHh---c-----cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCC
Q 037205 182 P-GIDLNFRRL---S-----RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEA 248 (439)
Q Consensus 182 ~-~~~~l~~~l---~-----~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~ 248 (439)
. .++.+++.. . ++.-++|+|+++... ...+|+..+..-.+++.+|++|.+. .++... .....+.+.+
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~ 171 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKL 171 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCC
Confidence 1 244444332 2 355688899997543 4556665555445677777776643 444333 2346788999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205 249 LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG 294 (439)
Q Consensus 249 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 294 (439)
++.+++.+.+.... .+ ...+..++..++|.|+....+.
T Consensus 172 ~~~~~~~~~L~~~~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 172 PPAHEALAWLLAQG-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred cCHHHHHHHHHHcC-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 99999988776431 11 2336678999999998665443
No 147
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.24 E-value=0.0011 Score=70.86 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCcccccchHHHHHhhhccC----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCC
Q 037205 114 SQLVGVESRVEEIESLLSVE----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENA 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~ 180 (439)
.++.|.+...+++.+.+... ..-.+-|.|+|++|+|||++|+.++..... |+ ....+.....+...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~- 230 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA- 230 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccH-
Confidence 34566666555555543210 011345899999999999999999887654 22 11111111111000
Q ss_pred CCcHHHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCCC--CCcEEEEEeCchHHHHhc----
Q 037205 181 IPGIDLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWLT--PVSRIILTTRNKQVLRNW---- 238 (439)
Q Consensus 181 ~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~~---- 238 (439)
......+.......+.+|++|+++... .+..++..+..+. .+.-+|.||..+..+...
T Consensus 231 ~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~Rp 310 (644)
T PRK10733 231 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRP 310 (644)
T ss_pred HHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCC
Confidence 001122233334567899999986531 1334433333222 234455577766543321
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205 239 -GVSKIYEMEALEYHHALELFSRHAFK 264 (439)
Q Consensus 239 -~~~~~~~l~~L~~~ea~~Lf~~~a~~ 264 (439)
..+..+.++..+.++-.+++..+...
T Consensus 311 gRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 311 GRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred cccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 24567889989988888888777633
No 148
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0054 Score=56.42 Aligned_cols=148 Identities=17% Similarity=0.300 Sum_probs=85.3
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
.++=|.|-..+++.+.... +-+..+-|.++|++|.|||-||+++++.... |+ .-.++...-+++.+
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 4456788888888775432 2356788999999999999999999998766 54 44444444444433
Q ss_pred CCCcHHHHHHHhccCCceEEecCCCCHHH----------------HHHHhcCCCCCC--CCcEEEEEe-Cch----HHHH
Q 037205 180 AIPGIDLNFRRLSRMKVLIFFYDVTCFSQ----------------LESLMGSLDWLT--PVSRIILTT-RNK----QVLR 236 (439)
Q Consensus 180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~--~gs~IiiTT-R~~----~v~~ 236 (439)
.. ..+..+-.-.+-+-.|.+|.++.... +-.|+.....|. .+-++|..| |.. .++.
T Consensus 235 rm-vrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallr 313 (408)
T KOG0727|consen 235 RM-VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 313 (408)
T ss_pred HH-HHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcC
Confidence 11 11111222235678888898853211 233444444333 345666544 432 2222
Q ss_pred hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 237 NWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 237 ~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
.-..+..++.+..+..+-.-.|....
T Consensus 314 pgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 314 PGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred CccccccccCCCCchhhhhhhHHhhh
Confidence 22345567777555555555565444
No 149
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0027 Score=65.21 Aligned_cols=171 Identities=18% Similarity=0.152 Sum_probs=105.6
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HHHHHHHHHHHhcCCC----CCC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-------YLLATKLISNLLKDEN----AIP 182 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~~~~~ll~~l~~~~~----~~~ 182 (439)
.++||-+...+.|...+..+. -...-...|+-|+||||+|+.++..+-- ....-.....+..... .++
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiD 94 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEID 94 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhh
Confidence 678999999999999887432 1345567999999999999988755421 1111111122222211 111
Q ss_pred -----cHHHHHHHhc--------cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEEE
Q 037205 183 -----GIDLNFRRLS--------RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYE 245 (439)
Q Consensus 183 -----~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~ 245 (439)
+++.+++... ++.=+.|+|+|... ..+.+|+..+..-.+.-..|+.|.+++ +... ......|.
T Consensus 95 aASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~ 174 (515)
T COG2812 95 AASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFD 174 (515)
T ss_pred hhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcccccc
Confidence 4455544433 34458889999754 458888877765445556566555443 3222 23457889
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
+..++.++-...+...+-...... .++....|++..+|-.
T Consensus 175 fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 175 FKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 999999998888887774444332 2455666677776643
No 150
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.001 Score=63.17 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=44.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HH-------HHHHHHHHHhcCCCCCC--cHHHHHHHhccCCc--eEEe
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YL-------LATKLISNLLKDENAIP--GIDLNFRRLSRMKV--LIFF 200 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~-------~~~~ll~~l~~~~~~~~--~~~~l~~~l~~~~~--LlVl 200 (439)
-|+|.++|+||.|||+|++++++++.. |. ....+.+....+....- ..+.+.+.+.++.. ++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 489999999999999999999998765 11 33344444443333111 34555666666554 4446
Q ss_pred cCCCC
Q 037205 201 YDVTC 205 (439)
Q Consensus 201 Ddv~~ 205 (439)
|.|.+
T Consensus 257 DEVES 261 (423)
T KOG0744|consen 257 DEVES 261 (423)
T ss_pred HHHHH
Confidence 99854
No 151
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0004 Score=65.53 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=44.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT 204 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 204 (439)
...-+.++|.+|+|||.||.++.+.+.. |+...+++..+......-.....+.+.++ +-=||||||+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh-cCCEEEEeccc
Confidence 4567889999999999999999998876 44444555555443332112233333333 33478899994
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.18 E-value=0.0017 Score=71.59 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=68.3
Q ss_pred CCCcccccchHHHHHhhhcc-------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHH
Q 037205 113 KSQLVGVESRVEEIESLLSV-------ESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNL 174 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l 174 (439)
...++|.+..++.+.+.+.. ......++.++|++|+|||.||+.++..+.. |+ ....-...+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence 36789999999999887642 1223457899999999999999988777632 11 111122223
Q ss_pred hcCCCCC---CcHHHHHHHhc-cCCceEEecCCCCH--HHHHHHhcCCCCCC-----------CCcEEEEEeC
Q 037205 175 LKDENAI---PGIDLNFRRLS-RMKVLIFFYDVTCF--SQLESLMGSLDWLT-----------PVSRIILTTR 230 (439)
Q Consensus 175 ~~~~~~~---~~~~~l~~~l~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~-----------~gs~IiiTTR 230 (439)
.+..+.. .....+.+.++ ...-+|+||+++.. +.++.|+..+.... ..+-||+||.
T Consensus 645 ~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 645 KGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 3332211 11122334444 34569999999643 33444444333211 3456777776
No 153
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.16 E-value=0.00044 Score=67.70 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCcccccchHHHHHhhhccC----CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLSVE----SKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.+++|.++.++++.+++... +...++++|+|++|+||||||..+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999999988642 234688999999999999999999888754
No 154
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0037 Score=64.21 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=74.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHHH-HHhccCCceEEecCCCCH------
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLNF-RRLSRMKVLIFFYDVTCF------ 206 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~------ 206 (439)
..-|.+||++|+|||-||++++|.... |+ ---+++....++.. ..+..+. +.=..-+++|.||.++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESE--rAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESE--RAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHH--HHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 456889999999999999999999775 44 11112211111100 0122222 222357899999999531
Q ss_pred -------HHHHHHhcCCCCC--CCCcEEEEEeCchHH-----HHhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205 207 -------SQLESLMGSLDWL--TPVSRIILTTRNKQV-----LRNWGVSKIYEMEALEYHHALELFSRHAF 263 (439)
Q Consensus 207 -------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 263 (439)
..+.+|+..+... -.|--||-.|.-+.+ +..-..+...-|+..+.+|-.+++....-
T Consensus 623 ~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 623 EGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 2255666555433 234445544443333 22223556777888899999999888774
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.11 E-value=0.003 Score=59.08 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+...+.++......+...+.. ..++.+.|.+|.|||+||.++..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345577888888888887762 348999999999999999987764
No 156
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0012 Score=71.58 Aligned_cols=101 Identities=14% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCcccccchHHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-------HHHHHHHHHhcCC
Q 037205 114 SQLVGVESRVEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL-------LATKLISNLLKDE 178 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~-------~~~~ll~~l~~~~ 178 (439)
..++|-+..++.|.+.+... ......+.++|++|+|||+||+.++..+.. |+ ........+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 56899999999888877521 112457889999999999999999887643 22 1111234444433
Q ss_pred CC---CCcHHHHHHHhccC-CceEEecCCCCHH--HHHHHhc
Q 037205 179 NA---IPGIDLNFRRLSRM-KVLIFFYDVTCFS--QLESLMG 214 (439)
Q Consensus 179 ~~---~~~~~~l~~~l~~~-~~LlVlDdv~~~~--~~~~l~~ 214 (439)
.. ......+.+.++.+ .-+++||+++... .++.|+.
T Consensus 538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq 579 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQ 579 (758)
T ss_pred CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHH
Confidence 21 11222344444444 4689999997543 3444443
No 157
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.00055 Score=66.96 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=50.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCC--CCCCcHHHHHHHhccCCceEEecCCCC----
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDE--NAIPGIDLNFRRLSRMKVLIFFYDVTC---- 205 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~--~~~~~~~~l~~~l~~~~~LlVlDdv~~---- 205 (439)
..+.++|.+|+|||.||.++++.+.. |+....++..+.... ....... ..+.+. .-=||||||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~-~~~~l~-~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEE-VYDLLI-NCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHH-HHHHhc-cCCEEEEeccCCCCCC
Confidence 66899999999999999999998755 333333444332211 0111111 122333 335899999932
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEeCc
Q 037205 206 FSQLESLMGSLDW-LTPVSRIILTTRN 231 (439)
Q Consensus 206 ~~~~~~l~~~~~~-~~~gs~IiiTTR~ 231 (439)
......|...+.. ...+-.+||||..
T Consensus 262 ~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 262 EFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2222333332221 1234568888874
No 158
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.00055 Score=67.59 Aligned_cols=27 Identities=19% Similarity=0.017 Sum_probs=23.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
-...+|+|++|+||||||+.+|+....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 346789999999999999999998764
No 159
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.018 Score=53.34 Aligned_cols=162 Identities=18% Similarity=0.192 Sum_probs=91.4
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH---------HHHHHHHHHhcCCC-CCC-cHHHHHHH-----h
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKISR------YL---------LATKLISNLLKDEN-AIP-GIDLNFRR-----L 191 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~---------~~~~ll~~l~~~~~-~~~-~~~~l~~~-----l 191 (439)
.++-+++.++|.-|.|||++++.+...... .+ +...+...+..... ... ....+.+. -
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 455679999999999999999955443322 11 44444445544222 222 22222222 2
Q ss_pred ccCC-ceEEecCCCCH--HHHHHHh---cCCCCCCCCcEEEEEeCc---h----HHHHhc-CCCeE-EEcCCCCHHHHHH
Q 037205 192 SRMK-VLIFFYDVTCF--SQLESLM---GSLDWLTPVSRIILTTRN---K----QVLRNW-GVSKI-YEMEALEYHHALE 256 (439)
Q Consensus 192 ~~~~-~LlVlDdv~~~--~~~~~l~---~~~~~~~~gs~IiiTTR~---~----~v~~~~-~~~~~-~~l~~L~~~ea~~ 256 (439)
++++ +.++.|+.... +.++.+. ..-..+..--+|+..-.. + .+.... ..... |+++|++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 3555 89999998532 2333332 222222222233332221 1 111111 12234 8999999999988
Q ss_pred HHHHhhhcCCCCCcc-hHHHHHHHHHHhCCCcHHHHHHHH
Q 037205 257 LFSRHAFKRNHPDVG-YEKLSSNVMKYVQGVPLALKVLGC 295 (439)
Q Consensus 257 Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~GlPLal~~~g~ 295 (439)
++..+..+...+.+- ..+....+.....|.|.++..++.
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888776444333322 356778889999999999987765
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.04 E-value=0.0021 Score=70.98 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCcccccchHHHHHhhhcc------CCC-CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHHh
Q 037205 114 SQLVGVESRVEEIESLLSV------ESK-DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNLL 175 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~------~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l~ 175 (439)
..++|-+..++.+...+.. ..+ ....+.++|++|+|||+||+.+++.+.. ++ ....-...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 6689999999999887642 111 2346778999999999999999877531 11 0011122222
Q ss_pred cCCC---CCCcHHHHHHHhccCC-ceEEecCCCC--HHHHHHHhcCCCCC-----------CCCcEEEEEeCc
Q 037205 176 KDEN---AIPGIDLNFRRLSRMK-VLIFFYDVTC--FSQLESLMGSLDWL-----------TPVSRIILTTRN 231 (439)
Q Consensus 176 ~~~~---~~~~~~~l~~~l~~~~-~LlVlDdv~~--~~~~~~l~~~~~~~-----------~~gs~IiiTTR~ 231 (439)
+..+ .......+.+.++.++ -+++||+++. .+.++.|+..+..+ ...+.+|+||..
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 2222 1112234556666665 4888999964 33455555444321 134566777763
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.04 E-value=0.0065 Score=57.69 Aligned_cols=24 Identities=33% Similarity=0.399 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|.|.|.+|+|||+||+.+++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999987543
No 162
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.03 E-value=0.00075 Score=65.44 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=58.4
Q ss_pred cccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCcHHHHHH
Q 037205 118 GVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPGIDLNFR 189 (439)
Q Consensus 118 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~~~~l~~ 189 (439)
++...+.....++..- .....-+.|+|..|+|||.||.++++.+.. |+-...++..+.....+- ......+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~-~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDG-SVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcC-cHHHHHH
Confidence 4444444444444421 113457889999999999999999999865 332223333332211111 1222223
Q ss_pred HhccCCceEEecCCCC--HHHHH--HHhcCC-C-CCCCCcEEEEEeC
Q 037205 190 RLSRMKVLIFFYDVTC--FSQLE--SLMGSL-D-WLTPVSRIILTTR 230 (439)
Q Consensus 190 ~l~~~~~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gs~IiiTTR 230 (439)
.+. +.=||||||+.. ...|. .++..+ . ....+-.+|+||.
T Consensus 214 ~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 214 AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 333 456899999942 22332 233322 1 1123456788886
No 163
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.032 Score=54.36 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=91.7
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH-HHHHHHHHHhc-------CC--CCCCcH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---------YL-LATKLISNLLK-------DE--NAIPGI 184 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~-~~~~ll~~l~~-------~~--~~~~~~ 184 (439)
+.+.+.+..+ .-...+.++|+.|+||+++|..++..+-- .- ....+...... .. ..+ .+
T Consensus 13 ~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I-~v 90 (319)
T PRK06090 13 QNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSI-TV 90 (319)
T ss_pred HHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcC-CH
Confidence 4444444321 12457889999999999999988765420 00 00000000000 00 011 23
Q ss_pred HHHHH---Hhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHH
Q 037205 185 DLNFR---RLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYH 252 (439)
Q Consensus 185 ~~l~~---~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ 252 (439)
+.+++ .+. +..-++|+|+++.. ....+|+..+..-.+++.+|++|.++ .++... .....+.+.+++.+
T Consensus 91 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~ 170 (319)
T PRK06090 91 EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTA 170 (319)
T ss_pred HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHH
Confidence 33333 332 34557888999754 34666666665555677777666654 444443 34568899999999
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
++.+.+.... . . ....++..++|.|+....+
T Consensus 171 ~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 171 QAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 9998876531 1 1 1356789999999976554
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.012 Score=57.71 Aligned_cols=145 Identities=16% Similarity=0.086 Sum_probs=83.9
Q ss_pred Cccc-ccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--H-----HHHHHHHHHHh-cCCCCC----
Q 037205 115 QLVG-VESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--Y-----LLATKLISNLL-KDENAI---- 181 (439)
Q Consensus 115 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f-----~~~~~ll~~l~-~~~~~~---- 181 (439)
.++| -+..++.+...+..+ .-.....++|+.|+||||+|+.+.+.+-- . .-.-.....+. +..++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 556667777776522 22456789999999999999988766420 0 00000000000 001011
Q ss_pred -----CcHHHH---HHHh-----ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEE
Q 037205 182 -----PGIDLN---FRRL-----SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIY 244 (439)
Q Consensus 182 -----~~~~~l---~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~ 244 (439)
-.++.+ .+.+ .+.+-++|+|+++.. +...+|+..+....+++.+|++|.++. +.... .....+
T Consensus 85 ~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i 164 (329)
T PRK08058 85 PDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVV 164 (329)
T ss_pred cccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceee
Confidence 022333 3222 234557888998644 345666666665556777887776543 33322 345788
Q ss_pred EcCCCCHHHHHHHHHH
Q 037205 245 EMEALEYHHALELFSR 260 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~ 260 (439)
++.+++.++..+.+..
T Consensus 165 ~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 165 EFRPLPPESLIQRLQE 180 (329)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999999887764
No 165
>PRK06696 uridine kinase; Validated
Probab=97.00 E-value=0.00083 Score=62.19 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=33.3
Q ss_pred ccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 119 VESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 119 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
|.+.+++|.+.+.. ......+|+|.|.+|+||||||+.+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45556666666543 345678999999999999999999887653
No 166
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.97 E-value=0.00061 Score=63.99 Aligned_cols=27 Identities=22% Similarity=0.095 Sum_probs=23.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
-..++|.|++|+|||||++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 457889999999999999999987653
No 167
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0044 Score=62.59 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH---HHHHHHHHHhcCCCCCC---cHHHH----HHHhccCCceEEec
Q 037205 133 ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL---LATKLISNLLKDENAIP---GIDLN----FRRLSRMKVLIFFY 201 (439)
Q Consensus 133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~---~~~~ll~~l~~~~~~~~---~~~~l----~~~l~~~~~LlVlD 201 (439)
+......+.+.|++|+|||+||..++..-.- |+ ..+.+. ..+ ....+ ...-+..--.||+|
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi--------G~sEsaKc~~i~k~F~DAYkS~lsiivvD 605 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI--------GLSESAKCAHIKKIFEDAYKSPLSIIVVD 605 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc--------CccHHHHHHHHHHHHHHhhcCcceEEEEc
Confidence 3445778889999999999999988765321 33 000000 011 11222 22334455789999
Q ss_pred CCCCHHH------------HHHHhcCCCCCC-CCcE--EEEEeCchHHHHhcC----CCeEEEcCCCCH-HHHHHHHHHh
Q 037205 202 DVTCFSQ------------LESLMGSLDWLT-PVSR--IILTTRNKQVLRNWG----VSKIYEMEALEY-HHALELFSRH 261 (439)
Q Consensus 202 dv~~~~~------------~~~l~~~~~~~~-~gs~--IiiTTR~~~v~~~~~----~~~~~~l~~L~~-~ea~~Lf~~~ 261 (439)
|+...-+ +++|.-.+.... .|-| |+-||-...++..|+ ....|.|+.++. ++..+.++..
T Consensus 606 diErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 606 DIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred chhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 9954333 344433322211 2334 455788888888876 346789999987 6777777654
No 168
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.034 Score=54.30 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=92.1
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---H--------HHHHHHHHHH-------hcCCC-CCCcH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---Y--------LLATKLISNL-------LKDEN-AIPGI 184 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f--------~~~~~ll~~l-------~~~~~-~~~~~ 184 (439)
+.+.+.+..+ .-.....++|+.|+||+++|+.++..+-- - -..+.+.... ..... .+ .+
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I-~i 89 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI-GV 89 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC-CH
Confidence 4455544422 12457789999999999999998765420 0 0000000000 00000 11 33
Q ss_pred HHHH---HHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCHH
Q 037205 185 DLNF---RRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYH 252 (439)
Q Consensus 185 ~~l~---~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ 252 (439)
+.++ +.+. ++.-++|+|+++.. ....+|+..+..-.+++.+|++|.++ .++... .....+.+.+++.+
T Consensus 90 d~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~ 169 (325)
T PRK06871 90 DQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQ 169 (325)
T ss_pred HHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHH
Confidence 4443 3332 45567889999754 34566666665555677777777655 444442 23568899999999
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 253 HALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 253 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
++.+.+.... . .+ ...+..++..++|.|+..
T Consensus 170 ~~~~~L~~~~-~----~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 170 QALDWLQAQS-S----AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHh-c----cC--hHHHHHHHHHcCCCHHHH
Confidence 9998887653 1 11 223567788999999633
No 169
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.0007 Score=59.70 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|+|++|+||||||+.+++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999988653
No 170
>PRK07667 uridine kinase; Provisional
Probab=96.93 E-value=0.0013 Score=59.41 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=31.2
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.|...+........+|+|.|.+|.||||+|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556666655455668999999999999999998877653
No 171
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0035 Score=65.44 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=84.0
Q ss_pred CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHH--HHHHhcCCC----C
Q 037205 114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKL--ISNLLKDEN----A 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~l--l~~l~~~~~----~ 180 (439)
.+-.|+++-.+.|.+.+.- ++.+-.+++.+|+||||||++|+.++..+.. |+ ....+ ...|.+... .
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence 5568999999999988743 4556789999999999999999999877654 32 00000 001111111 1
Q ss_pred CC--cHHHHHHHhccCCceEEecCCCCHH------HHHHHhcCCC---C--C--------CCCcEEEE-EeCch-H--HH
Q 037205 181 IP--GIDLNFRRLSRMKVLIFFYDVTCFS------QLESLMGSLD---W--L--------TPVSRIIL-TTRNK-Q--VL 235 (439)
Q Consensus 181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~~~---~--~--------~~gs~Iii-TTR~~-~--v~ 235 (439)
.+ .++.++ ..+..+-|+.||.|+..- --.+|+..+. + | -.=|+|++ .|-|. . ..
T Consensus 491 MPGkiIq~LK-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 491 MPGKIIQCLK-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred CChHHHHHHH-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 11 122222 234467788889996421 1122222221 0 0 11267764 33322 0 01
Q ss_pred HhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 037205 236 RNWGVSKIYEMEALEYHHALELFSRHAF 263 (439)
Q Consensus 236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 263 (439)
.......++++.+-..+|-..+-.++..
T Consensus 570 pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 570 PLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 1123447899999999988877766653
No 172
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00084 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
--|+|.||||+||||+++.+.+.++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 45899999999999999999998876
No 173
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.90 E-value=0.022 Score=53.29 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=109.1
Q ss_pred CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH-----------------
Q 037205 115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL----------------- 165 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~----------------- 165 (439)
.+.++++.-..+.++.. ..+.+-..+||++|.||-|.+..+.+.+.. |.
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 46677777777776655 456788899999999999999888777643 21
Q ss_pred --------------HHHHHHHHHhcCCC-CCCcHHHHHHHhccCCc-eEEecCCCCHH--HHHHHhcCCCCCCCCcEEEE
Q 037205 166 --------------LATKLISNLLKDEN-AIPGIDLNFRRLSRMKV-LIFFYDVTCFS--QLESLMGSLDWLTPVSRIIL 227 (439)
Q Consensus 166 --------------~~~~ll~~l~~~~~-~~~~~~~l~~~l~~~~~-LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iii 227 (439)
+.++++.++.+... +. -..+.| ++|+-.+++.. .-.+|........+.+|+|+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie~---------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIET---------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL 162 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchhh---------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 33333333332221 10 011233 45555555432 22233333333456778876
Q ss_pred EeCch--HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHHhh-cC----
Q 037205 228 TTRNK--QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGCFL-YK---- 299 (439)
Q Consensus 228 TTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~~L-~~---- 299 (439)
...+. -+.+.-...-.++++..+++|....+++.+-+.....+ ++++.+|+++++|+-- ||-++-..- ..
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 43321 11111123356789999999999999988866554443 7899999999998743 333222111 11
Q ss_pred -----CCHHHHHHHHHHH
Q 037205 300 -----REKEVWESAINKL 312 (439)
Q Consensus 300 -----~~~~~w~~~l~~l 312 (439)
-...+|+-++.+.
T Consensus 241 a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred ccCCCCCCccHHHHHHHH
Confidence 1356798888774
No 174
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.87 E-value=0.00037 Score=59.33 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=57.3
Q ss_pred ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCC--CCC----cHHHHHHH
Q 037205 117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDEN--AIP----GIDLNFRR 190 (439)
Q Consensus 117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~--~~~----~~~~l~~~ 190 (439)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..-.. .... ..+ ..+.+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~------------~~~~~~~~~~~~~~~~~l~~- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR------------ANGPFIVIDCASLPAELLEQ- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT------------CCS-CCCCCHHCTCHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc------------cCCCeEEechhhCcHHHHHH-
Confidence 57777788888777643334456789999999999999988766431 0000 111 1121111
Q ss_pred hccCCceEEecCCCCHH--HHHHHhcCCCC-CCCCcEEEEEeCch
Q 037205 191 LSRMKVLIFFYDVTCFS--QLESLMGSLDW-LTPVSRIILTTRNK 232 (439)
Q Consensus 191 l~~~~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~IiiTTR~~ 232 (439)
.+.--|+|+|++... ....|...+.. .....|+|.||...
T Consensus 68 --a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 --AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 256678889997543 22233222211 14567999999844
No 175
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.87 E-value=0.008 Score=63.21 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=41.2
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.....++|.+..++++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999999988764333344577999999999999999987643
No 176
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0026 Score=64.25 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=78.4
Q ss_pred CCcccccch---HHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCC
Q 037205 114 SQLVGVESR---VEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIP 182 (439)
Q Consensus 114 ~~~vGr~~~---~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~ 182 (439)
.+.-|-|+. +++|.+.|... ..=.+-|.++|+||.|||-||++++-.... |+. ....+++
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~---------~sGSEFd 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY---------ASGSEFD 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe---------ccccchh
Confidence 456677764 45555556431 112567899999999999999999987765 220 0000111
Q ss_pred ------cHHHHHHHh----ccCCceEEecCCCCH-------------HHHHHHhcCCCCCCCCcEEEE--EeCchHHHHh
Q 037205 183 ------GIDLNFRRL----SRMKVLIFFYDVTCF-------------SQLESLMGSLDWLTPVSRIIL--TTRNKQVLRN 237 (439)
Q Consensus 183 ------~~~~l~~~l----~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~ 237 (439)
+...++... ..-++.|.+|.++.. ..+.+|+..+..|.++.-||| .|.-+..+..
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 333333333 346899999998532 226677766666655443433 3433333222
Q ss_pred c-----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 238 W-----GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 238 ~-----~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
. ..+..+.|+..+..--.++|..+.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 1 234455666655554455555544
No 177
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.025 Score=55.62 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCc-hHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037205 194 MKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPD 269 (439)
Q Consensus 194 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 269 (439)
+.-++|+|+++. .....+|+..+..-.+++.+|++|.+ ..++... .....+.+.+++.++..+.+.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 455788899964 34566777666655677766665554 4444442 234688999999999998887641 1 1
Q ss_pred cchHHHHHHHHHHhCCCcHHHHHH
Q 037205 270 VGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 270 ~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
+ ...++..++|.|+....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999754433
No 178
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.025 Score=52.35 Aligned_cols=179 Identities=19% Similarity=0.313 Sum_probs=95.5
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
+++=|.+..++++.+.+-. +-....-+..||++|.|||-+|++.+.+... |+ ...++.+-..+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGd-- 248 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD-- 248 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcc--
Confidence 4566777888877775422 1123567889999999999999998877655 55 111222211111
Q ss_pred CCCcHHHHHHHh----ccCCceEEecCCCCH-------------H---HHHHHhcCCCCCCCC--cEEEEEeC-----ch
Q 037205 180 AIPGIDLNFRRL----SRMKVLIFFYDVTCF-------------S---QLESLMGSLDWLTPV--SRIILTTR-----NK 232 (439)
Q Consensus 180 ~~~~~~~l~~~l----~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~g--s~IiiTTR-----~~ 232 (439)
+...++..+ ...+..|.+|.++-. + ..-.|+..+..|.+. -+||..|. ++
T Consensus 249 ---GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 249 ---GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP 325 (424)
T ss_pred ---hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence 223333322 245778888887321 1 123444555555444 46665554 33
Q ss_pred HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhc-CCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205 233 QVLRNWGVSKIYEMEALEYHHALELFSRHAFK-RNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297 (439)
Q Consensus 233 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 297 (439)
.++.+-..+..++.+..+++.-..++.-+.-+ ...+.-+++++++.--..-|.--.|+.+=|+++
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi 391 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI 391 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHH
Confidence 44444445567777766665555555545432 224455667665443332222233444444433
No 179
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0037 Score=65.10 Aligned_cols=170 Identities=16% Similarity=0.239 Sum_probs=92.6
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
..+.|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.... |+ ....+++...+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGese 321 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESE 321 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHH
Confidence 4455666555555543321 1134568999999999999999999996544 32 00122221111100
Q ss_pred CCCcHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCCCCC--CcEEEEEeCchHHHHhc-----C
Q 037205 180 AIPGIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDWLTP--VSRIILTTRNKQVLRNW-----G 239 (439)
Q Consensus 180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~-----~ 239 (439)
....+......+..++.|.+|+++.. .....++..+..... +..+|-||-.+...... .
T Consensus 322 -k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 322 -KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred -HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCc
Confidence 00122233334568899999999431 223444444432223 33345555544433321 3
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC
Q 037205 240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG 285 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 285 (439)
.+..+.++..+.++..+.|..+.-....+ -...-....+++.+.|
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 46788899999999999999887432222 0112224445555555
No 180
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.82 E-value=0.0096 Score=58.46 Aligned_cols=47 Identities=23% Similarity=0.126 Sum_probs=35.4
Q ss_pred cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+||....++++.+.+..-...-.-|.|+|.+|+||+++|+.+.+.-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 47888778887777654333345578999999999999999876543
No 181
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.80 E-value=0.0014 Score=55.68 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.042 Score=54.01 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=92.1
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH------HHHHHHHH-------HhcCC--CCCC
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL------LATKLISN-------LLKDE--NAIP 182 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~------~~~~ll~~-------l~~~~--~~~~ 182 (439)
-+.+.+.+..+ .-...+.++|+.|+||+++|..++..+-- -. ..+.+... +.... ..+.
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG 89 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC
Confidence 34455555422 22457889999999999999987765410 00 00000000 00000 0111
Q ss_pred --cHHHHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCeEEEcCCCCH
Q 037205 183 --GIDLNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEY 251 (439)
Q Consensus 183 --~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~ 251 (439)
.+..+.+.+. +++-++|+|+++.. ....+|+..+..-.+++.+|++|.+. .++... .....+.+.+++.
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~ 169 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPE 169 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCH
Confidence 2233333332 45668888998744 34566666665545677777777654 455442 2345788999999
Q ss_pred HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 252 HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 252 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
+++.+.+.... . .+ .+.+..++..++|.|...
T Consensus 170 ~~~~~~L~~~~---~-~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 170 QYALTWLSREV---T-MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHHHHHcc---C-CC---HHHHHHHHHHcCCCHHHH
Confidence 99988775432 1 11 334678899999999643
No 183
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=0.017 Score=58.85 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=33.7
Q ss_pred chHHHHHhhhc-----cCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 121 SRVEEIESLLS-----VESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 121 ~~~~~l~~~L~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+.+.++..||. ...-+.+++.|+|++|+||||..+.++..+..
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 35677777876 34456789999999999999999988776543
No 184
>PRK06921 hypothetical protein; Provisional
Probab=96.78 E-value=0.001 Score=63.17 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+.++|.+|+|||+||.++++.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 46788999999999999999988764
No 185
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.78 E-value=0.0011 Score=55.13 Aligned_cols=22 Identities=50% Similarity=0.794 Sum_probs=20.5
Q ss_pred EEEecCCCChhHHHHHHHHhHH
Q 037205 140 LGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|+|.|++|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 186
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.76 E-value=0.017 Score=56.77 Aligned_cols=48 Identities=23% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.+..++++.+.+..-...-.-|.|+|.+|+||+++|+.+...-
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 569999999999988876533334467899999999999999987543
No 187
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.74 E-value=0.0039 Score=57.02 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=67.6
Q ss_pred CCCCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDENAIPGIDLNF 188 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~~~~~~~~l~ 188 (439)
..-..++|.|...+.+.+--.. ..-...-|.+||--|.|||+|++++.+.+.. +-++-+.-...++...-.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~-----~glrLVEV~k~dl~~Lp~l~ 131 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD-----EGLRLVEVDKEDLATLPDLV 131 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-----cCCeEEEEcHHHHhhHHHHH
Confidence 4556799999888887763321 2233456889999999999999999988754 00010000001222334445
Q ss_pred HHhc--cCCceEEecCCC---CHHHHHHHhcCCCC---CCCCcEEEEEeCch
Q 037205 189 RRLS--RMKVLIFFYDVT---CFSQLESLMGSLDW---LTPVSRIILTTRNK 232 (439)
Q Consensus 189 ~~l~--~~~~LlVlDdv~---~~~~~~~l~~~~~~---~~~gs~IiiTTR~~ 232 (439)
..|+ ..++.|..||.. ..+..+.|...+.. ..+...++..|.|+
T Consensus 132 ~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 132 ELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 5554 468888899993 23334555444431 22334455555444
No 188
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.72 E-value=0.026 Score=53.96 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=98.5
Q ss_pred CCccccc---chHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH------------HH----------HH
Q 037205 114 SQLVGVE---SRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR------------YL----------LA 167 (439)
Q Consensus 114 ~~~vGr~---~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------f~----------~~ 167 (439)
+.+||-. ..++.|..+|.. .....+-+.|+|.+|+|||++++++...... .+ +.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4466643 345666666654 3445678999999999999999999876543 01 55
Q ss_pred HHHHHHHhcCCCCCC----cHHHHHHHhcc-CCceEEecCCCCH-----HHHHHHh---cCCCCCCCCcEEEEEeCchHH
Q 037205 168 TKLISNLLKDENAIP----GIDLNFRRLSR-MKVLIFFYDVTCF-----SQLESLM---GSLDWLTPVSRIILTTRNKQV 234 (439)
Q Consensus 168 ~~ll~~l~~~~~~~~----~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~---~~~~~~~~gs~IiiTTR~~~v 234 (439)
..++..+........ ....+.+.++. +--+||+|++.+. .+-..++ ..+.+--.-+-|.+-|++-.-
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 666666655443222 23334455554 4568899999653 1111111 222212223455666664322
Q ss_pred HHhc-----CCCeEEEcCCCCHH-HHHHHHHHhh--hcCCCCC-cchHHHHHHHHHHhCCCcHHHHH
Q 037205 235 LRNW-----GVSKIYEMEALEYH-HALELFSRHA--FKRNHPD-VGYEKLSSNVMKYVQGVPLALKV 292 (439)
Q Consensus 235 ~~~~-----~~~~~~~l~~L~~~-ea~~Lf~~~a--~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~ 292 (439)
+-.. +...++.++.-..+ +...|+.... +.-..++ -...+++..|...++|+.=-+..
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 2111 12345566655443 3444543322 1111222 23468899999999998655443
No 189
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.69 E-value=0.014 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|.|+|++|+||||+|+.++..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988765
No 190
>PRK07261 topology modulation protein; Provisional
Probab=96.68 E-value=0.0013 Score=58.25 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999987664
No 191
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.68 E-value=0.04 Score=53.63 Aligned_cols=48 Identities=21% Similarity=0.095 Sum_probs=34.2
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCC-cchHHHHHHHHHHhCCCcHHH
Q 037205 243 IYEMEALEYHHALELFSRHAFKRNHPD-VGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 243 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 290 (439)
+++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333222 233455666677779999754
No 192
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.02 Score=52.69 Aligned_cols=143 Identities=18% Similarity=0.374 Sum_probs=83.7
Q ss_pred Cccc-ccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 115 QLVG-VESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 115 ~~vG-r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
..|| .|..+++|.+.+... -....-+.++|++|.|||-||+.+++...- |+ .-.++.+...+.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ige-- 224 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE-- 224 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhh--
Confidence 3555 577888888765431 134677889999999999999999988654 32 222222222222
Q ss_pred CCCcHHHHHHHh----ccCCceEEecCCCCH-------------H-H--HHHHhcCCCCC--CCCcEEEEEeCchHHHH-
Q 037205 180 AIPGIDLNFRRL----SRMKVLIFFYDVTCF-------------S-Q--LESLMGSLDWL--TPVSRIILTTRNKQVLR- 236 (439)
Q Consensus 180 ~~~~~~~l~~~l----~~~~~LlVlDdv~~~-------------~-~--~~~l~~~~~~~--~~gs~IiiTTR~~~v~~- 236 (439)
+...+++.+ .+-+-.|..|.+++. + | .-.|+..+..| .++-+||..|.--.++.
T Consensus 225 ---gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~ 301 (404)
T KOG0728|consen 225 ---GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP 301 (404)
T ss_pred ---hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH
Confidence 222222221 245677888887532 1 1 22333444333 35667777665433332
Q ss_pred ----hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 237 ----NWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 237 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
.-..+..++.++.+++.-.+++.-+.
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 22456678888888887777776554
No 193
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.63 E-value=0.0021 Score=66.42 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=41.8
Q ss_pred CCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.+++|.+..++.|.+.|.. -+..-+++.++|++|+||||||+.+.+-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4689999999999998832 2345689999999999999999999877655
No 194
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.61 E-value=0.044 Score=57.49 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCCCcccccchHHHHHhhhcc--CC-CCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH--------------
Q 037205 112 NKSQLVGVESRVEEIESLLSV--ES-KDVYALGIWGIGGIGKTTIARATFDKISR---------YL-------------- 165 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~-------------- 165 (439)
.+..+-+|+.+..+|...+.. .. ..-+.+=|.|.+|.|||.++..|.+.+.. |.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 456788999999999998864 22 23458889999999999999999997764 32
Q ss_pred HHHHHHHHHhcCCC-CCCcHHHHHHHhc-----cCCceEEecCCCCHHH--HHHHhcCCCC-CCCCcEEEEEeCc-h---
Q 037205 166 LATKLISNLLKDEN-AIPGIDLNFRRLS-----RMKVLIFFYDVTCFSQ--LESLMGSLDW-LTPVSRIILTTRN-K--- 232 (439)
Q Consensus 166 ~~~~ll~~l~~~~~-~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~IiiTTR~-~--- 232 (439)
+...|+..+.+... .....+.+..+.. .+..++++|+++..-. -+-|-..+.| ..++|+++|-+=. .
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 44555555544443 1224555655554 3567888898854321 1222223333 2467877654431 1
Q ss_pred -------HHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-CcchHHHHHHHHHHhCCCcHHHHHHHHh
Q 037205 233 -------QVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYVQGVPLALKVLGCF 296 (439)
Q Consensus 233 -------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~g~~ 296 (439)
.+...+| ...+...+-++++-.+.......+...- ....+=++++|+.-.|-.-.|+.+.-+.
T Consensus 554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111122 2345677777777777776554322111 1122334555555555555555554443
No 195
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.011 Score=61.93 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=77.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT 204 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 204 (439)
...-|.|.|..|+|||+||+++++.+.. |+ +...-+..+.. .....+.+.+...+-++||||++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk-----~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQK-----FLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHH-----HHHHHHHHHHhhCCcEEEEcchh
Confidence 3567899999999999999999988765 11 00000000000 01223345566789999999995
Q ss_pred CHH--------H-------HHHHh----cCCCCCCCCcE--EEEEeCchHHHHh-----cCCCeEEEcCCCCHHHHHHHH
Q 037205 205 CFS--------Q-------LESLM----GSLDWLTPVSR--IILTTRNKQVLRN-----WGVSKIYEMEALEYHHALELF 258 (439)
Q Consensus 205 ~~~--------~-------~~~l~----~~~~~~~~gs~--IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf 258 (439)
..- + +..++ ... ...+.+ +|.|.....-.+. .-......++.+...+-.+++
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL 582 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL 582 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence 211 1 11111 111 123333 4445443322211 123456788888887776666
Q ss_pred HHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHH
Q 037205 259 SRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVL 293 (439)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 293 (439)
+... ...... ...+...-+..+|+|. |.-+.++
T Consensus 583 ~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 583 TTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHH
Confidence 5443 222211 1223333477778765 4444443
No 196
>PTZ00494 tuzin-like protein; Provisional
Probab=96.60 E-value=0.2 Score=50.31 Aligned_cols=197 Identities=12% Similarity=0.072 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhc-------------cccccccCCcc--hhhHHHHHHHhhhhccccccc---CCCCCCCCcccccchHHH
Q 037205 64 QTWRKGLREAVG-------------LSGFHYRSIRP--ESELINEVVNHILKRLLEEVF---RPRDNKSQLVGVESRVEE 125 (439)
Q Consensus 64 ~~W~~aL~~~~~-------------~~g~~~~~~~~--e~~~i~~iv~~i~~~l~~~~~---~p~~~~~~~vGr~~~~~~ 125 (439)
..||.+|++-+. ..||.+.+... .+-.+.--++...+.+++... +.......+|.|+.+-.-
T Consensus 303 Rd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~ 382 (664)
T PTZ00494 303 TNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEAL 382 (664)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHH
Confidence 378888776532 34555544332 233344445555555444321 112456789999999888
Q ss_pred HHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH-------HHHHHHHHHhcCCCCCC--cHHHH-----
Q 037205 126 IESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR---YL-------LATKLISNLLKDENAIP--GIDLN----- 187 (439)
Q Consensus 126 l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~-------~~~~ll~~l~~~~~~~~--~~~~l----- 187 (439)
+.+.|.. +...+|++.+.|.-|.||++|.+....+... |+ ....+...+.-...+.- ..+.+
T Consensus 383 vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~ 462 (664)
T PTZ00494 383 VRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMR 462 (664)
T ss_pred HHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhCCCChhhhccHHHHHHHHHH
Confidence 8888875 3456899999999999999999987766554 44 44445555443332221 22222
Q ss_pred --HHHhccCCceEEec--CCCCHHH-HHHHhcCCCCCCCCcEEEEEeCchHHHHhc---CCCeEEEcCCCCHHHHHHHHH
Q 037205 188 --FRRLSRMKVLIFFY--DVTCFSQ-LESLMGSLDWLTPVSRIILTTRNKQVLRNW---GVSKIYEMEALEYHHALELFS 259 (439)
Q Consensus 188 --~~~l~~~~~LlVlD--dv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~ 259 (439)
+....++.-+||+- +=.+... ..+.. .+..-..-|.|++----+.+.... ..-..|-+++++.++|.+.-.
T Consensus 463 ~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~Ytq 541 (664)
T PTZ00494 463 GATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAE 541 (664)
T ss_pred HHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHh
Confidence 22234566677753 2222221 11111 111112346777654433332111 123578899999999988655
Q ss_pred Hh
Q 037205 260 RH 261 (439)
Q Consensus 260 ~~ 261 (439)
+.
T Consensus 542 H~ 543 (664)
T PTZ00494 542 HT 543 (664)
T ss_pred cc
Confidence 43
No 197
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0071 Score=59.00 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=77.7
Q ss_pred CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH--------HHHHHHHH----H---hc
Q 037205 115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL--------LATKLISN----L---LK 176 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~--------~~~~ll~~----l---~~ 176 (439)
.++|-+.....+..+..........+.++|++|+||||+|..+++.+.. +. ....+... + ..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 3567777777777777643333446999999999999999998887652 00 00000000 0 00
Q ss_pred CCC-CCC-cHHHHHHHhc--------cCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCch-HHHHhc-CCCe
Q 037205 177 DEN-AIP-GIDLNFRRLS--------RMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSK 242 (439)
Q Consensus 177 ~~~-~~~-~~~~l~~~l~--------~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~ 242 (439)
... ..+ ..+.+++... +..-++++|+++... ...++..........+++|++|.+. .+.... ....
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~ 161 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQ 161 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcce
Confidence 000 111 2333333322 356788899997654 3556665555556788888888743 333322 2345
Q ss_pred EEEcCCCCHH
Q 037205 243 IYEMEALEYH 252 (439)
Q Consensus 243 ~~~l~~L~~~ 252 (439)
.+++.+.+..
T Consensus 162 ~i~f~~~~~~ 171 (325)
T COG0470 162 RIRFKPPSRL 171 (325)
T ss_pred eeecCCchHH
Confidence 6667664333
No 198
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.57 E-value=0.0096 Score=52.89 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=59.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH----------------HHHHHHHHHHHhcCC---C----CCC----cHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR----------------YLLATKLISNLLKDE---N----AIP----GIDLNFR 189 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------f~~~~~ll~~l~~~~---~----~~~----~~~~l~~ 189 (439)
-.+++|+|+.|+|||||.+.+...... |+.+.+.+..+.-.. . ..+ ..-.+.+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 458999999999999999988532111 223333444443211 1 112 1223344
Q ss_pred HhccC--CceEEecCCC---CHHHHHHHhcCCCC-CCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 190 RLSRM--KVLIFFYDVT---CFSQLESLMGSLDW-LTPVSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 190 ~l~~~--~~LlVlDdv~---~~~~~~~l~~~~~~-~~~gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
.+..+ +-+++||+.. +....+.+...+.. ...|..||++|.+...... ++.++.+
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 45567 7888999873 22222222222111 1246778899998877643 4556555
No 199
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.54 E-value=0.002 Score=58.23 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.7
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999887765
No 200
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.52 E-value=0.0058 Score=55.46 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=58.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH------HHHHH--HHHH----HHhcC-C---CCCCcHHHHHHHhccCCceEEec
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR------YLLAT--KLIS----NLLKD-E---NAIPGIDLNFRRLSRMKVLIFFY 201 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~--~ll~----~l~~~-~---~~~~~~~~l~~~l~~~~~LlVlD 201 (439)
.+|.|.|+.|.||||++..+...... +.+.. ++.. .+... . ......+.++..++..+=.+++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 46899999999999999987766542 10000 0000 00000 0 01124456777788788899999
Q ss_pred CCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205 202 DVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236 (439)
Q Consensus 202 dv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 236 (439)
++.+.+.+....... ..|..++.|+-......
T Consensus 82 Eird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 82 EMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 998877665544332 24566777777665543
No 201
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.52 E-value=0.0027 Score=63.06 Aligned_cols=26 Identities=19% Similarity=-0.004 Sum_probs=22.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-..++|+|++|.|||||++.+++.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35789999999999999999998754
No 202
>PRK04132 replication factor C small subunit; Provisional
Probab=96.51 E-value=0.028 Score=61.37 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=83.3
Q ss_pred CCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCcHHHHHHHh----c-----c-CCceEEecCCCCH--HHH
Q 037205 145 IGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPGIDLNFRRL----S-----R-MKVLIFFYDVTCF--SQL 209 (439)
Q Consensus 145 ~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~~~~l~~~l----~-----~-~~~LlVlDdv~~~--~~~ 209 (439)
+.++||||+|..+++++.. |- ..... +..+..+.+.+++.+ . + +.-++|+|+++.. +..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~------~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQ 647 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWR------HNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 647 (846)
T ss_pred CCcccHHHHHHHHHHhhhccccc------CeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHH
Confidence 7899999999999887621 10 00000 000101222222221 1 1 3468999999754 356
Q ss_pred HHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 210 ESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 210 ~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
.+|...+......+++|++|.+.. +.... .....+++.+++.++..+.+.+.+....... ..+....+++.++|.+
T Consensus 648 nALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 648 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDM 725 (846)
T ss_pred HHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCH
Confidence 666666655556777777666543 32222 2357899999999999888877664332221 2567889999999988
Q ss_pred HHH
Q 037205 288 LAL 290 (439)
Q Consensus 288 Lal 290 (439)
...
T Consensus 726 R~A 728 (846)
T PRK04132 726 RRA 728 (846)
T ss_pred HHH
Confidence 554
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.51 E-value=0.033 Score=60.40 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=38.6
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|+...++.+.+.+..-...-..|.|+|.+|+|||++|+.+++...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 4699999999988876654333345688999999999999999987543
No 204
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.014 Score=60.80 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=96.6
Q ss_pred CCCCCcccccchHHHHHhhhcc--CC--------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 111 DNKSQLVGVESRVEEIESLLSV--ES--------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
....+.-|.|+..+++.+.+.. +. -=++-+.++|+||.|||.||++++..... |. .-..+..-..+-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC
Confidence 3446788998877777776542 11 12567899999999999999999988765 21 000000000000
Q ss_pred CCCCCcHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCCCCCc--EEEE-EeCchHHH---
Q 037205 178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWLTPVS--RIIL-TTRNKQVL--- 235 (439)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~gs--~Iii-TTR~~~v~--- 235 (439)
......+...+..++-++.+++|.++.. ..+.+|+.....++.+. .|+. |.|. .|+
T Consensus 227 -GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp-dVlD~A 304 (596)
T COG0465 227 -GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP-DVLDPA 304 (596)
T ss_pred -CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc-ccchHh
Confidence 0000224445555667899999887421 23667776666666333 2332 4443 332
Q ss_pred --HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-CcchHHHHHHHHHHhCCCcHH
Q 037205 236 --RNWGVSKIYEMEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 236 --~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLa 289 (439)
..-..+..+.++..+...-.+.+.-++-..... .-++ ..|++.+-|.-.|
T Consensus 305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 222345566677666666666666565333222 2122 2377777777555
No 205
>PRK06762 hypothetical protein; Provisional
Probab=96.47 E-value=0.0026 Score=55.86 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=22.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+|.|+|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999998886
No 206
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.46 E-value=0.015 Score=50.89 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=68.8
Q ss_pred cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH--------HHHHHHHHHhcC-----CCCC-
Q 037205 118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL--------LATKLISNLLKD-----ENAI- 181 (439)
Q Consensus 118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~--------~~~~ll~~l~~~-----~~~~- 181 (439)
|-+...+.|.+.+..+ .-...+.++|..|+||+|+|..+++.+-. .. ....+......+ ....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 3445566666666522 22456789999999999999998876532 00 111111110000 0010
Q ss_pred -C-cHHHHHH---Hhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcC
Q 037205 182 -P-GIDLNFR---RLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEME 247 (439)
Q Consensus 182 -~-~~~~l~~---~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~ 247 (439)
. .++.+++ .+. +..-++|+|+++.. +...+|+..+.....++.+|++|.+.. +.... .....+.++
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 1 3344443 322 34568899999753 445666665555557889988888664 33332 334566666
Q ss_pred CCC
Q 037205 248 ALE 250 (439)
Q Consensus 248 ~L~ 250 (439)
+|+
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 207
>PRK08233 hypothetical protein; Provisional
Probab=96.45 E-value=0.0024 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+|+|.|.+|+||||||..+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999988765
No 208
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.44 E-value=0.0029 Score=57.81 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.9
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999988765
No 209
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.43 E-value=0.01 Score=68.63 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=25.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+-|.++|++|.|||.||++++.....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 4678899999999999999999998766
No 210
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.40 E-value=0.013 Score=56.16 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=89.2
Q ss_pred CCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------------HHHHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-------------LATKLISNL 174 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------------~~~~ll~~l 174 (439)
..++|-..+-+++.+++.. ...+...+.|+|+.|.|||+|......+... |+ ....+..++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 4689999999999988864 1223446789999999999998777666433 22 223333333
Q ss_pred hcCCC-------CC-CcHHHHHHHhcc------CCceEEecCCCCH----HH--HHHHhcCCC-CCCCCcEEEEEeCchH
Q 037205 175 LKDEN-------AI-PGIDLNFRRLSR------MKVLIFFYDVTCF----SQ--LESLMGSLD-WLTPVSRIILTTRNKQ 233 (439)
Q Consensus 175 ~~~~~-------~~-~~~~~l~~~l~~------~~~LlVlDdv~~~----~~--~~~l~~~~~-~~~~gs~IiiTTR~~~ 233 (439)
..+.. .. +....+...|+. -+++.|+|.++-. .| +-.+..... ...|-+-|-+|||-..
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 22111 11 144555555543 3588888888532 11 333332222 2345566779999542
Q ss_pred -------HHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 234 -------VLRNWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 234 -------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
|-..+.-..++-++.++.++-.+++++..
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 22333333466678888888888887765
No 211
>PRK03839 putative kinase; Provisional
Probab=96.37 E-value=0.0029 Score=56.34 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|.|++|+||||+|+.+++.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998754
No 212
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.35 E-value=0.0032 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987655
No 213
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.033 Score=58.91 Aligned_cols=90 Identities=22% Similarity=0.337 Sum_probs=54.1
Q ss_pred CCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCC
Q 037205 114 SQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENA 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~ 180 (439)
.++=|.+.-..+|.+-+.. +--+..-|.+||+||.|||-||++|+...+- |+ ---+++.--.++.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS-- 749 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS-- 749 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch--
Confidence 4566777777777765432 1122456889999999999999999988765 43 0011111111110
Q ss_pred CCcHHHHHHHh-ccCCceEEecCCCC
Q 037205 181 IPGIDLNFRRL-SRMKVLIFFYDVTC 205 (439)
Q Consensus 181 ~~~~~~l~~~l-~~~~~LlVlDdv~~ 205 (439)
...+..+.++. ...+++|.||.+++
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 750 EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHHHHHhhccCCeEEEeccccc
Confidence 00223333333 35899999999965
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.33 E-value=0.012 Score=56.24 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+.+++.++|++|+||||++..++..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3468999999999999999998876553
No 215
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.18 Score=47.86 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=90.3
Q ss_pred CCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 113 KSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
=+++-|.+...+.|.+..-. ....-+-|.++|++|.||+.||++|+..... |+ ....+.+...+...
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 35678888888888874321 2233688999999999999999999876544 32 22223333222211
Q ss_pred CCCcHHHHHHHh-ccCCceEEecCCCCH---------HHHH----HHhcCCC---CCCCCcEEEEEeCchHHHHhc---C
Q 037205 180 AIPGIDLNFRRL-SRMKVLIFFYDVTCF---------SQLE----SLMGSLD---WLTPVSRIILTTRNKQVLRNW---G 239 (439)
Q Consensus 180 ~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~----~l~~~~~---~~~~gs~IiiTTR~~~v~~~~---~ 239 (439)
.++..+.+.. .+++-.|.+|.++.. +... .++.... ....|.-|+-.|.-+-++.+. .
T Consensus 212 --kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRR 289 (439)
T KOG0739|consen 212 --KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRR 289 (439)
T ss_pred --HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHH
Confidence 0222222222 357889999998532 1111 2222222 123344555567666554442 1
Q ss_pred CCeEEEcCCCCHHHH-HHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC
Q 037205 240 VSKIYEMEALEYHHA-LELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV 286 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea-~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 286 (439)
....+-++ |.+..| ..+|.-+.... |..-.+...+++.++..|.
T Consensus 290 FekRIYIP-LPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 290 FEKRIYIP-LPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred hhcceecc-CCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCC
Confidence 22333343 444455 44565555322 2222344566777777665
No 216
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.31 E-value=0.0034 Score=56.08 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+.++|+|.|++|+||||+|+.+...+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999986653
No 217
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.31 E-value=0.016 Score=49.88 Aligned_cols=73 Identities=25% Similarity=0.256 Sum_probs=43.1
Q ss_pred EecCCCChhHHHHHHHHhHHhH-HH--------------HHHHHHHHHhcCCCCCC---cHHHHHHHhcc--CCceEEec
Q 037205 142 IWGIGGIGKTTIARATFDKISR-YL--------------LATKLISNLLKDENAIP---GIDLNFRRLSR--MKVLIFFY 201 (439)
Q Consensus 142 I~G~gGiGKTtLA~~v~~~~~~-f~--------------~~~~ll~~l~~~~~~~~---~~~~l~~~l~~--~~~LlVlD 201 (439)
|.|+||+||||+|+.++.++.- .+ -....+.........++ ....+...+.. ...-+|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 6899999999999999988643 11 01112222222222222 44555555553 35678899
Q ss_pred CC-CCHHHHHHHhc
Q 037205 202 DV-TCFSQLESLMG 214 (439)
Q Consensus 202 dv-~~~~~~~~l~~ 214 (439)
++ .+.++.+.|..
T Consensus 81 GfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 81 GFPRTLEQAEALEE 94 (151)
T ss_dssp SB-SSHHHHHHHHH
T ss_pred eccccHHHHHHHHH
Confidence 99 56666665543
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.0028 Score=52.75 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=22.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+.|+|++|+||||+|+.++.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46889999999999999999877654
No 219
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.038 Score=55.21 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCC-CCCCcHHHHHHHhc--cCCceEEecCCCCHHH-----
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDE-NAIPGIDLNFRRLS--RMKVLIFFYDVTCFSQ----- 208 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~-~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~----- 208 (439)
-|--.++|+||.|||++..++++.+.- .+..-. .....-..+++.|. ..+-+||+.|++..-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~y---------dIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~ 305 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNY---------DIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERR 305 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCC---------ceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccc
Confidence 356779999999999999999987642 000000 01112233555554 3566777787753211
Q ss_pred ---------------HHHHhcCCCC--CCC-CcEEE-EEeCchHHHHhc-----CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205 209 ---------------LESLMGSLDW--LTP-VSRII-LTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSRHAFK 264 (439)
Q Consensus 209 ---------------~~~l~~~~~~--~~~-gs~Ii-iTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 264 (439)
+.-|+..+.. .+. +-||| .||....-+... ..+--+.+.-=+.+.-..|+.++...
T Consensus 306 ~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 306 KKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred ccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 2223333321 122 34665 577765443331 23345678888888888888888733
Q ss_pred CCCCCcchHHHHHHHHHHhCCCcHHHHHHH-HhhcCC
Q 037205 265 RNHPDVGYEKLSSNVMKYVQGVPLALKVLG-CFLYKR 300 (439)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~GlPLal~~~g-~~L~~~ 300 (439)
+. + ..+..+|.+...|.-+.=..++ .++..+
T Consensus 386 ~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 386 EE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 22 2 2345555555555544433343 344444
No 220
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.011 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+.|.+.|.||+||||+|+++...++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46788999999999999999988765
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.27 E-value=0.018 Score=58.46 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...+|.++|.+|+||||+|..++..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4679999999999999999999877654
No 222
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.26 E-value=0.0047 Score=56.42 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=23.8
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....+|+|.|++|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999886653
No 223
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.25 E-value=0.0088 Score=58.32 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+++++|++|+||||++..++..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 224
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.25 E-value=0.038 Score=59.50 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=37.1
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...++|.+..+.++.+....-......|.|+|.+|+||+++|+.+.+..
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568898888888777665422233347899999999999999998754
No 225
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.24 E-value=0.057 Score=56.40 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=41.3
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....++|....++++.+.+..-...-..|.|+|..|+|||++|+.+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 346799999999999988875444455688999999999999999987643
No 226
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.031 Score=52.66 Aligned_cols=89 Identities=25% Similarity=0.416 Sum_probs=58.3
Q ss_pred CCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
.++=|.++.+++|.+-.... -....-|.+||.+|.|||-||++|+|+.+. |+ +-.++++.-++..+
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 45667899999998865431 123567789999999999999999999887 66 44444444444332
Q ss_pred CCCcHHHHHHHh-ccCCceEEecCCC
Q 037205 180 AIPGIDLNFRRL-SRMKVLIFFYDVT 204 (439)
Q Consensus 180 ~~~~~~~l~~~l-~~~~~LlVlDdv~ 204 (439)
. .+..+.+.. .+-+-.+.+|.++
T Consensus 265 k--lvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 265 K--LVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred H--HHHHHHHHHHhcCCceEEeehhh
Confidence 1 223333332 2456677778773
No 227
>PTZ00301 uridine kinase; Provisional
Probab=96.24 E-value=0.0043 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+|||.|.+|.||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999877664
No 228
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.23 E-value=0.0063 Score=56.54 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.....+|+|.|.+|.|||||++.+...+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34678999999999999999998776654
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.032 Score=54.61 Aligned_cols=142 Identities=19% Similarity=0.144 Sum_probs=74.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------H-H-----HHHHHHHH-------HhcCC---------CCCCcHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------Y-L-----LATKLISN-------LLKDE---------NAIPGIDLNF 188 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f-~-----~~~~ll~~-------l~~~~---------~~~~~~~~l~ 188 (439)
...+.++|+.|+||||+|+.++..+-- - - ....+... +.... ..+ .++.++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I-~id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQI-KIDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCc-CHHHHH
Confidence 456889999999999999998766420 0 0 00000000 00000 001 233333
Q ss_pred ---HHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCCCHHHHHH
Q 037205 189 ---RRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALE 256 (439)
Q Consensus 189 ---~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~ 256 (439)
+.+. +++-++|+|+++.. .....++..+.....++.+|++|.+.. +.... .....+.+.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 3332 23345566877543 333444433332234566777777654 33332 234678899999999988
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 257 LFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 257 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
.+.... .... . ..+..++|-|+.
T Consensus 180 ~L~~~~-----~~~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 180 YLRERG-----VAEP-E----ERLAFHSGAPLF 202 (325)
T ss_pred HHHhcC-----CCcH-H----HHHHHhCCChhh
Confidence 776531 1111 1 123568898864
No 230
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.19 E-value=0.0045 Score=62.44 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=37.0
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577888888888888863 34678899999999999999988763
No 231
>PRK00625 shikimate kinase; Provisional
Probab=96.19 E-value=0.004 Score=55.20 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|+||+|+||||+++.+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999888654
No 232
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.18 E-value=0.016 Score=51.64 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=58.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-------------------HH----HHHHHHHHHhc-----CC-CCCC----c
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-------------------YL----LATKLISNLLK-----DE-NAIP----G 183 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------f~----~~~~ll~~l~~-----~~-~~~~----~ 183 (439)
-.+++|.|..|.|||||++.++..... +. ...+++..+.- .. ...+ .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 458999999999999999988754321 00 00112222211 11 1222 1
Q ss_pred HHHHHHHhccCCceEEecCCC---CHHHHHHHhcCCCCC-CC-CcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 184 IDLNFRRLSRMKVLIFFYDVT---CFSQLESLMGSLDWL-TP-VSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 184 ~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
.-.+-+.+-..+-++++|+.. +....+.+...+... .. +..||++|.+......+ ++..+.+
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 233455666788999999883 222222222222111 12 66788888887765443 2344443
No 233
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.18 E-value=0.009 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=21.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..|-|++-.|.||||+|...+-+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~ 28 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG 28 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788888899999999887766554
No 234
>PRK04040 adenylate kinase; Provisional
Probab=96.17 E-value=0.0045 Score=55.67 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999988873
No 235
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.15 E-value=0.0047 Score=54.36 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...|.|+|++|+||||+|+.++..+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999988754
No 236
>PRK06547 hypothetical protein; Provisional
Probab=96.15 E-value=0.0077 Score=53.32 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....+|+|.|.+|+||||+|+.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999887643
No 237
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.15 E-value=0.0083 Score=65.39 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=84.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH---------HHHHHHHHHhcCCC---C---CC-cHHHHHHHhc--
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL---------LATKLISNLLKDEN---A---IP-GIDLNFRRLS-- 192 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~---------~~~~ll~~l~~~~~---~---~~-~~~~l~~~l~-- 192 (439)
+.++++|+|+.|.|||||.+.+.-..-. ++ ...++...+..... . +. ....+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 3478999999999999999988655211 21 11111111111110 0 11 1222233333
Q ss_pred cCCceEEecCCCC---HHHHH----HHhcCCCCCCCCcEEEEEeCchHHHHhcCCCe-E--EEcCCCCHHHHHHHHHHhh
Q 037205 193 RMKVLIFFYDVTC---FSQLE----SLMGSLDWLTPVSRIILTTRNKQVLRNWGVSK-I--YEMEALEYHHALELFSRHA 262 (439)
Q Consensus 193 ~~~~LlVlDdv~~---~~~~~----~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~-~--~~l~~L~~~ea~~Lf~~~a 262 (439)
..+-|+++|+... ...-. .++..+. ..|+.+|+||....+........ + +.+. ++. +... | .+-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p-~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-P-TYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-e-EEE
Confidence 4789999999843 22222 2232322 35789999999887644321111 1 1111 111 1111 0 111
Q ss_pred hcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHH
Q 037205 263 FKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKL 312 (439)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l 312 (439)
+..+.+. ...+-.|++.+ |+|-.+..-|..+.+......+..+.+|
T Consensus 475 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 475 LLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred ECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1112222 34466676665 8888888777777654444555555544
No 238
>PHA00729 NTP-binding motif containing protein
Probab=96.15 E-value=0.0077 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+...|.|+|.+|+||||||..+.+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999988753
No 239
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.14 E-value=0.0044 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEecCCCChhHHHHHHHHhHH
Q 037205 140 LGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|-|+|.+|+|||+||..++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977665
No 240
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.11 E-value=0.0047 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.3
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|+|.+|+|||+||+.+++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999988754
No 241
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.01 Score=51.96 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH-HH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR-YL 165 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~ 165 (439)
+-|.++||.|.||||+.+.+++.+.- |+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 34789999999999999999887655 44
No 242
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.06 E-value=0.029 Score=56.69 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.++|.+|+||||+|..++..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999998876654
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.03 E-value=0.027 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCCeeEEEEecCCCChhHHHHHHH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARAT 157 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v 157 (439)
.+++..|.+.|.+|.|||-||.+.
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHH
Confidence 467999999999999999988653
No 244
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0064 Score=55.29 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=25.4
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+.+|||-|.+|.||||+|+.+++.+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998876
No 245
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.032 Score=49.22 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=58.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HH----HHHHHHHh--cCCC---C-------CC----cHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YL----LA----TKLISNLL--KDEN---A-------IP----GIDLN 187 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~----~~ll~~l~--~~~~---~-------~~----~~~~l 187 (439)
-.+++|.|..|.|||||.+.++.-... ++ +. ...-..+. .... . .+ ..-.+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 458999999999999999998765432 10 00 00000010 0000 0 11 11223
Q ss_pred HHHhccCCceEEecCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 188 FRRLSRMKVLIFFYDVTC------FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 188 ~~~l~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
.+.+..++-+++||+-.. ...+..++..+. .+..||++|.+...... ++..+.+
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 445567888999998742 222333333332 35678888888777654 4555554
No 246
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0096 Score=55.22 Aligned_cols=87 Identities=17% Similarity=0.368 Sum_probs=53.1
Q ss_pred cccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCC
Q 037205 116 LVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAI 181 (439)
Q Consensus 116 ~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~ 181 (439)
+=|=.+++++|.+.... +-+...-|.++|++|.|||-+|++++|+... |+ +-.++.+.-.++..
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgega-- 256 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA-- 256 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhH--
Confidence 33455566666654321 2245677899999999999999999999776 54 34444433333211
Q ss_pred CcHHHHHHHhcc-CCceEEecCCC
Q 037205 182 PGIDLNFRRLSR-MKVLIFFYDVT 204 (439)
Q Consensus 182 ~~~~~l~~~l~~-~~~LlVlDdv~ 204 (439)
..+..+.+..+. |.++|.+|.++
T Consensus 257 rmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccc
Confidence 012333333444 55888889873
No 247
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.99 E-value=0.028 Score=49.35 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=58.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH--------------HH------HHHHHHHHHhc-CCCCCC----cHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR--------------YL------LATKLISNLLK-DENAIP----GIDLNFRRL 191 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------f~------~~~~ll~~l~~-~~~~~~----~~~~l~~~l 191 (439)
-.+++|.|..|.|||||++.++..... |+ ....+...+.. .....+ ..-.+.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999998765432 11 11122222211 111333 223345556
Q ss_pred ccCCceEEecCCCC---HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 192 SRMKVLIFFYDVTC---FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 192 ~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
..++-++++|+-.. ....+.+...+... +..||++|.+...... ++.++.+
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 67888999998732 22222222222111 3568888887765432 4555554
No 248
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.03 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+.++|+++|++|+||||++..++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999876654
No 249
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.98 E-value=0.0063 Score=61.96 Aligned_cols=45 Identities=18% Similarity=0.026 Sum_probs=37.4
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++||+..++.+...+..+ .-|.|.|++|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 45999999999999887633 3478999999999999999887643
No 250
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.97 E-value=0.013 Score=58.16 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=57.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-------HH-HHHHHHHHHhcCCCCCCcHHHHHHHhccCCceEEecCCC--C
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-------YL-LATKLISNLLKDENAIPGIDLNFRRLSRMKVLIFFYDVT--C 205 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~-~~~~ll~~l~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~ 205 (439)
..+-+=|||..|.|||.|+-.+|+.+.. |- ...++-+.+.......+.+..+.+.+.++..||+||++. +
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVTD 140 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeeccc
Confidence 4677889999999999999999988754 11 112222222222223335566677788888899999872 3
Q ss_pred H---HHHHHHhcCCCCCCCCcEEEEEeCch
Q 037205 206 F---SQLESLMGSLDWLTPVSRIILTTRNK 232 (439)
Q Consensus 206 ~---~~~~~l~~~~~~~~~gs~IiiTTR~~ 232 (439)
. .-+..|+..+ +..|. +||+|-|.
T Consensus 141 iaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 141 IADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred hhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 3 2345555443 23455 45555444
No 251
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.96 E-value=0.018 Score=49.29 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=55.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HHHHHHHHHHHhcCCCCCC----cHHHHHHHhccCCceEEecCCC---
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YLLATKLISNLLKDENAIP----GIDLNFRRLSRMKVLIFFYDVT--- 204 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~~~~~ll~~l~~~~~~~~----~~~~l~~~l~~~~~LlVlDdv~--- 204 (439)
-.+++|.|..|.|||||++.+...... ++... ..+. -....+ ..-.+-+.+..++-++++|+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i~-~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKIG-YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEEE-EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 468999999999999999988765431 10000 0000 000022 1223455566788899999883
Q ss_pred CHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 205 CFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 205 ~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
+......+...+... +..||++|.+....... .+.++.+
T Consensus 102 D~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 102 DLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 222222222222111 24688888877665443 2344443
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.049 Score=57.19 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=80.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHH-HHHhccCCceEEecCCCCH-------
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLN-FRRLSRMKVLIFFYDVTCF------- 206 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~------- 206 (439)
.-|.++|++|+|||-||-+++....- |+ ---+++..-.+... ..+..+ .+.-..+++.|.+|.+++.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSE--q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD 779 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASE--QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD 779 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccH--HHHHHHHHHhhccCCeEEEeccccccCcccCCC
Confidence 45889999999999999998876543 33 11222222222111 122223 3333458999999998642
Q ss_pred ------HHHHHHhcCCCC--CCCCcEEE-EEeCchHH----HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchH
Q 037205 207 ------SQLESLMGSLDW--LTPVSRII-LTTRNKQV----LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYE 273 (439)
Q Consensus 207 ------~~~~~l~~~~~~--~~~gs~Ii-iTTR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 273 (439)
....+|+..+.. .-.|--|+ .|||-.-+ +..-..++.+.-+..++.+-+++|....-....+. .
T Consensus 780 sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~ 856 (952)
T KOG0735|consen 780 STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---D 856 (952)
T ss_pred CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---c
Confidence 225556555542 12344444 47774322 22223344455556667777777765542111111 2
Q ss_pred HHHHHHHHHhCCCcHH
Q 037205 274 KLSSNVMKYVQGVPLA 289 (439)
Q Consensus 274 ~~~~~i~~~~~GlPLa 289 (439)
-..+.++.++.|..-|
T Consensus 857 vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 857 VDLECLAQKTDGFTGA 872 (952)
T ss_pred cchHHHhhhcCCCchh
Confidence 2356777788877655
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.017 Score=51.32 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=57.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HH---HHHHHHHh--cCC-------------CCCC----cHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YL----LA---TKLISNLL--KDE-------------NAIP----GID 185 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~---~~ll~~l~--~~~-------------~~~~----~~~ 185 (439)
-.+++|.|..|.|||||++.++..... ++ +. ..+-..+. .+. ...+ ..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 357999999999999999988755332 10 00 01111110 000 0111 112
Q ss_pred HHHHHhccCCceEEecCCCC---HH---HHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 186 LNFRRLSRMKVLIFFYDVTC---FS---QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
.+.+.+-.++-+++||+... .. .+..++..+ ..+..||++|.+...... ++..+.+
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 33455567888999998842 22 222222222 236778888988877653 4555544
No 254
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.93 E-value=0.0097 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.+|-|+|.+|.||||||+++..++..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999888754
No 255
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.91 E-value=0.036 Score=49.15 Aligned_cols=52 Identities=6% Similarity=0.053 Sum_probs=34.9
Q ss_pred HHHHHhccCCceEEecCC----CCHHHHHHH--hcCCCCCCCCcEEEEEeCchHHHHhcC
Q 037205 186 LNFRRLSRMKVLIFFYDV----TCFSQLESL--MGSLDWLTPVSRIILTTRNKQVLRNWG 239 (439)
Q Consensus 186 ~l~~~l~~~~~LlVlDdv----~~~~~~~~l--~~~~~~~~~gs~IiiTTR~~~v~~~~~ 239 (439)
.+.+.+-+++-+|+-|.- +....|+-+ +..+ ...|+.|+++|.+..+...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 355666788999998854 433333322 2222 346899999999999988874
No 256
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.90 E-value=0.0062 Score=55.24 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=21.9
Q ss_pred CceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch
Q 037205 195 KVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 232 (439)
Q Consensus 195 ~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 232 (439)
..++|+|++.+ ..++..++.. .+.||++|++--..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred ceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 56899999954 4567777654 46899999987543
No 257
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.028 Score=52.51 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHhccCCceEEecCC----CC--HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205 185 DLNFRRLSRMKVLIFFYDV----TC--FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 185 ~~l~~~l~~~~~LlVlDdv----~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 238 (439)
-.+-+.|..++=||+||.- +. ...+-.++..+. ..|..||+.|-|-.....+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence 3466778889999999975 22 223444444443 2388999999988765553
No 258
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.87 E-value=0.0081 Score=53.26 Aligned_cols=27 Identities=41% Similarity=0.731 Sum_probs=23.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.+.|++|+||||+|+.+++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998875
No 259
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.85 E-value=0.0073 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999987754
No 260
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.83 E-value=0.0083 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988853
No 261
>PRK13947 shikimate kinase; Provisional
Probab=95.82 E-value=0.0072 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|+|++|+||||+|+.+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999988764
No 262
>PRK06217 hypothetical protein; Validated
Probab=95.81 E-value=0.0068 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|.|.|.+|.||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999987754
No 263
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.81 E-value=0.006 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=17.8
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|+|.+|+||||+|+.++..+..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999887654
No 264
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.80 E-value=0.0066 Score=54.96 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+|+|.|.+|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999987654
No 265
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.78 E-value=0.0067 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.|+|++|+||||+|+.+.....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 367999999999999999888754
No 266
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.77 E-value=0.0072 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|.|.|++|+||||+|+.+...+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987754
No 267
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.15 Score=50.44 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=36.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHhhhc----CCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205 241 SKIYEMEALEYHHALELFSRHAFK----RNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297 (439)
Q Consensus 241 ~~~~~l~~L~~~ea~~Lf~~~a~~----~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 297 (439)
..+++++..+.+|+-.+...+.-. ...+. ++..+++.-..+|+|--++.++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 456889999999998887655421 11222 4456677777799996666666554
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.76 E-value=0.014 Score=51.07 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=57.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HH----HHHHHHHhcCCCCCC----cHHHHHHHhccCCceEE
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YL----LA----TKLISNLLKDENAIP----GIDLNFRRLSRMKVLIF 199 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~----~~ll~~l~~~~~~~~----~~~~l~~~l~~~~~LlV 199 (439)
-.+++|.|..|.|||||.+.++..... ++ +. .........-....+ ..-.+-+.+-..+-+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 458999999999999999998765432 11 00 000000000000122 12234445567788999
Q ss_pred ecCCCC---HHHHHHHhcCCCCC-CCCcEEEEEeCchHHHHhcCCCeEEEc
Q 037205 200 FYDVTC---FSQLESLMGSLDWL-TPVSRIILTTRNKQVLRNWGVSKIYEM 246 (439)
Q Consensus 200 lDdv~~---~~~~~~l~~~~~~~-~~gs~IiiTTR~~~v~~~~~~~~~~~l 246 (439)
+|+..+ ....+.+...+... ..|..||++|.+...+... ++..+.+
T Consensus 106 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 998842 22222222222111 2366788889887654443 2344443
No 269
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.75 E-value=0.0082 Score=53.33 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.++.|.|++|+|||||++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999887654
No 270
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.74 E-value=0.021 Score=54.30 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=61.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH---------HHHHHHHHHhc--CCC---CCC------cHHHHHHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL---------LATKLISNLLK--DEN---AIP------GIDLNFRR 190 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~---------~~~~ll~~l~~--~~~---~~~------~~~~l~~~ 190 (439)
+...++|+|.+|.|||||.+.+...... ++ ...++...... +.. ..+ ...-+...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence 4578999999999999999999877653 11 11233222111 000 000 12222333
Q ss_pred hc-cCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205 191 LS-RMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236 (439)
Q Consensus 191 l~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 236 (439)
+. ..+-++++|.+...+.+..+..... .|..+|+||.+..+..
T Consensus 190 i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 190 IRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 33 5788999999988877777665543 5778999998766533
No 271
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.74 E-value=0.017 Score=53.84 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=28.3
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++.+.+.....+..+|||.|+||.|||||.-.+...+.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 3444444444445678999999999999999998877664
No 272
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.72 E-value=0.013 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.184 Sum_probs=22.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-.+|.+.|.-|.||||+++.++..+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999887653
No 273
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.72 E-value=0.0072 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+|||.|.+|+||||||+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999877665
No 274
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.0074 Score=52.54 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEecCCCChhHHHHHHHH
Q 037205 139 ALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~ 158 (439)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 275
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.70 E-value=0.0072 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987764
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=95.69 E-value=0.051 Score=53.32 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+..+|+++|++|+||||++..++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999988888766543
No 277
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.68 E-value=0.01 Score=52.28 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=52.4
Q ss_pred cccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-------HHHHHHHHHhcCCC-CCC-
Q 037205 116 LVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-------LATKLISNLLKDEN-AIP- 182 (439)
Q Consensus 116 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-------~~~~ll~~l~~~~~-~~~- 182 (439)
+||.+..++++.+.+..-......|.|+|..|.||+.+|+.+.+.-.. |+ ..+.+-..+.+... ...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~ 80 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTG 80 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccc
Confidence 478888888888877642223355679999999999999999885432 54 23334455555433 111
Q ss_pred ----cHHHHHHHhccCCceEEecCCCCH
Q 037205 183 ----GIDLNFRRLSRMKVLIFFYDVTCF 206 (439)
Q Consensus 183 ----~~~~l~~~l~~~~~LlVlDdv~~~ 206 (439)
....+. ....=-|+||++++.
T Consensus 81 ~~~~~~G~l~---~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 81 ARSDKKGLLE---QANGGTLFLDEIEDL 105 (168)
T ss_dssp TSSEBEHHHH---HTTTSEEEEETGGGS
T ss_pred cccccCCcee---eccceEEeecchhhh
Confidence 112222 223456888999754
No 278
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.66 E-value=0.012 Score=52.04 Aligned_cols=26 Identities=42% Similarity=0.518 Sum_probs=23.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999988764
No 279
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.63 E-value=0.0094 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|+|.|.+|+||||||..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999998877653
No 280
>PRK14530 adenylate kinase; Provisional
Probab=95.63 E-value=0.0097 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|+|++|+||||+|+.++..+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999877653
No 281
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.63 E-value=0.02 Score=56.47 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=26.1
Q ss_pred HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+...+..-. .-..++|+|.+|+|||||++.+++.+.
T Consensus 123 vID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 123 VVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred hhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 555554322 224568999999999999999887664
No 282
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.61 E-value=0.01 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|+|++|.||||+|+.+...+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999877654
No 283
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.61 E-value=0.0088 Score=55.55 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
-.++|+|.+|.|||||...+......
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 35779999999999999988876544
No 284
>PRK13949 shikimate kinase; Provisional
Probab=95.60 E-value=0.01 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|+|++|.||||+++.+++.+.-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999887654
No 285
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.59 E-value=0.014 Score=63.87 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=84.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH---------HHHHHHHHHhcCCC---CCC----cHHHHHHHhc--
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL---------LATKLISNLLKDEN---AIP----GIDLNFRRLS-- 192 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~---------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~-- 192 (439)
+.+++.|+|+.+.||||+.+.+.--.-- |+ +...++..+..... ..+ ....+...+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~ 405 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKA 405 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhC
Confidence 4578899999999999999987643211 22 11111111111111 011 1222333333
Q ss_pred cCCceEEecCCCC---HHHH----HHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCe---EEEcCCCCHHHHHHHHHHhh
Q 037205 193 RMKVLIFFYDVTC---FSQL----ESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSK---IYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 193 ~~~~LlVlDdv~~---~~~~----~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~---~~~l~~L~~~ea~~Lf~~~a 262 (439)
..+-|+++|.... ...- ..++..+. ..|+.+|+||.+..+........ ...+. ++. +. +-..+-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~--l~~~Yk 479 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ET--LRPTYR 479 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-Cc--CcEEEE
Confidence 3788999999842 2221 22222222 24789999999987765542211 11111 111 11 111111
Q ss_pred hcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHH
Q 037205 263 FKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKL 312 (439)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l 312 (439)
+..+.+. ...+-.|++.+ |+|-.+..-|..+........+..+..|
T Consensus 480 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 480 LLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred EeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 1122222 34466677665 8888888777777654444555555544
No 286
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.01 Score=51.06 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.7
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+|.|-|++|+||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999988764
No 287
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.57 E-value=0.035 Score=55.34 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~ 108 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK 108 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34555566533344578999999999999999999876543
No 288
>PRK04296 thymidine kinase; Provisional
Probab=95.56 E-value=0.014 Score=52.46 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=51.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH-----HHH---------HHHHHHHHhcCCCC--CCcHHHHHHHh---ccCCceE
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR-----YLL---------ATKLISNLLKDENA--IPGIDLNFRRL---SRMKVLI 198 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~~---------~~~ll~~l~~~~~~--~~~~~~l~~~l---~~~~~Ll 198 (439)
.++.|+|.+|.||||+|..++.+... .++ ...+.+.+...... ......+.+.+ .++.-+|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 46788999999999999998887754 110 01111111100000 11122222222 2355689
Q ss_pred EecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch
Q 037205 199 FFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 232 (439)
Q Consensus 199 VlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 232 (439)
|+|.+.- .+++..+...+. ..|..||+|.++.
T Consensus 83 iIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred EEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 9999953 344444443321 3578899999973
No 289
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.55 E-value=0.0093 Score=52.59 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=37.9
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH---HH---------HHHHHHHHHhcCCCCCC---cHHHHHHHhcc--CCceEEecC
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR---YL---------LATKLISNLLKDENAIP---GIDLNFRRLSR--MKVLIFFYD 202 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~---f~---------~~~~ll~~l~~~~~~~~---~~~~l~~~l~~--~~~LlVlDd 202 (439)
+.|.|.+|.|||++|.++...... |+ +++.+............ ....+.+.+.. +.-.+++|.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 678999999999999998765332 22 44444443333332222 33344444432 234788898
Q ss_pred C
Q 037205 203 V 203 (439)
Q Consensus 203 v 203 (439)
+
T Consensus 82 l 82 (169)
T cd00544 82 L 82 (169)
T ss_pred H
Confidence 7
No 290
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.55 E-value=0.016 Score=51.10 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++++|+|..|+|||||++.+...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999876654
No 291
>PLN02674 adenylate kinase
Probab=95.54 E-value=0.042 Score=51.36 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=44.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHH--------------HHhcCCCCCC---cHHHHHHHhccC--Cce
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR-YLLATKLIS--------------NLLKDENAIP---GIDLNFRRLSRM--KVL 197 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~--------------~l~~~~~~~~---~~~~l~~~l~~~--~~L 197 (439)
..|.|.|+||+||||+|+.++.++.. ++....+++ .+.....-.+ ....+.+.+... .--
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g 111 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 111 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCc
Confidence 45789999999999999999887654 221122222 2222222111 345556666432 245
Q ss_pred EEecCC-CCHHHHHHH
Q 037205 198 IFFYDV-TCFSQLESL 212 (439)
Q Consensus 198 lVlDdv-~~~~~~~~l 212 (439)
+|||.+ .+..|.+.|
T Consensus 112 ~ilDGfPRt~~Qa~~l 127 (244)
T PLN02674 112 FILDGFPRTVVQAQKL 127 (244)
T ss_pred EEEeCCCCCHHHHHHH
Confidence 889998 555665544
No 292
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.53 E-value=0.014 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|.|+|..|+|||||++.+.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999887764
No 293
>PRK05439 pantothenate kinase; Provisional
Probab=95.53 E-value=0.019 Score=55.54 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.....+|||.|.+|+||||+|+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999876644
No 294
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.52 E-value=0.013 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+++|.++|+.|+||||.+.+++..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 36899999999999999888877654
No 295
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.52 E-value=0.021 Score=52.45 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=56.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH--hH---HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHH--hccC
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI--SR---YL--------LATKLISNLLKDEN---AIP----GIDLNFRR--LSRM 194 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~--~~---f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~--l~~~ 194 (439)
.+.+.|+|+.|.|||||.+.+.... .. |+ ...++...+..... ..+ ..+.+... +...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 4889999999999999999887432 11 22 22223333322222 111 12222222 2367
Q ss_pred CceEEecCCCC---HHH----HHHHhcCCCCCC-CCcEEEEEeCchHHHHhc
Q 037205 195 KVLIFFYDVTC---FSQ----LESLMGSLDWLT-PVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 195 ~~LlVlDdv~~---~~~----~~~l~~~~~~~~-~gs~IiiTTR~~~v~~~~ 238 (439)
+.|++||+... ..+ ..++...+...+ .+..+|+||.+...+...
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 89999999843 111 122222222111 235799999988876654
No 296
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.04 Score=50.27 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=53.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH----HH--------HHHHHHHHHhcCCC-----------CCCcHHHHHHHh-c
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR----YL--------LATKLISNLLKDEN-----------AIPGIDLNFRRL-S 192 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~--------~~~~ll~~l~~~~~-----------~~~~~~~l~~~l-~ 192 (439)
..-..|.|+||+|||||.+.++.-.+. |. -..++...+.+... .....+-+.... .
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 334779999999999999998877665 22 11111111111000 000111122222 2
Q ss_pred cCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCc
Q 037205 193 RMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRN 231 (439)
Q Consensus 193 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~ 231 (439)
..+=++|.|.+...++..++.... ..|-+++.|..-
T Consensus 217 m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 217 MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 357789999998888777666654 367787776653
No 297
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.52 E-value=0.012 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=23.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|.|.|++|+||||+|+.+..+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988864
No 298
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.48 E-value=0.021 Score=59.90 Aligned_cols=45 Identities=24% Similarity=0.474 Sum_probs=36.5
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999998876532 3345679999999999999999764
No 299
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.012 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|.|.|.+|.||||+|+.+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999998853
No 300
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.012 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+-|.|.|.||+||||||.+++....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 34588999999999999999985543
No 301
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.40 E-value=0.0099 Score=51.91 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEecCCCChhHHHHHHHHhHHh
Q 037205 140 LGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
|.|+|++|+||||+|+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999887754
No 302
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.38 E-value=0.017 Score=57.71 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCcccccchHHHHHhhhcc------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLSV------------ESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..++|.+..++.+.-.+.. +....+-|.++|++|+|||++|+.+......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578888777777544431 1112467889999999999999999887654
No 303
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.34 E-value=0.046 Score=48.17 Aligned_cols=94 Identities=13% Similarity=0.025 Sum_probs=53.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHH----hcCCCCC-----C----------
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNL----LKDENAI-----P---------- 182 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l----~~~~~~~-----~---------- 182 (439)
...|-|++-.|.||||.|..++-+... |+ --...+..+ ....... +
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 357788888999999999888776654 32 001111111 0000000 0
Q ss_pred cHHHHHHHhccC-CceEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCchH
Q 037205 183 GIDLNFRRLSRM-KVLIFFYDVT--------CFSQLESLMGSLDWLTPVSRIILTTRNKQ 233 (439)
Q Consensus 183 ~~~~l~~~l~~~-~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 233 (439)
..+..++.+... -=|+|||.+. +.+.+-.++... .++..+|+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCCC
Confidence 233444455444 4599999983 333444444433 36779999999763
No 304
>PRK14529 adenylate kinase; Provisional
Probab=95.34 E-value=0.06 Score=49.67 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=44.4
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH-HHHH--------------HHHHHHHhcCCCCCC---cHHHHHHHhccC-CceEEe
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR-YLLA--------------TKLISNLLKDENAIP---GIDLNFRRLSRM-KVLIFF 200 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~-f~~~--------------~~ll~~l~~~~~~~~---~~~~l~~~l~~~-~~LlVl 200 (439)
|.|.|++|+||||+|+.++..+.- ++.. ...+..+.....-.+ ....+.+++... ..-+||
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iL 82 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLL 82 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEE
Confidence 778999999999999999887654 2211 111222222222111 445566666432 456899
Q ss_pred cCC-CCHHHHHHHh
Q 037205 201 YDV-TCFSQLESLM 213 (439)
Q Consensus 201 Ddv-~~~~~~~~l~ 213 (439)
|.+ .+.+|.+.|.
T Consensus 83 DGfPRt~~Qa~~l~ 96 (223)
T PRK14529 83 DGFPRNKVQAEKLW 96 (223)
T ss_pred eCCCCCHHHHHHHH
Confidence 999 5666655553
No 305
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.33 E-value=0.025 Score=51.95 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=28.5
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..|..+|..+-..-.++.|+|.+|+||||||.+++...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555343456789999999999999999987654
No 306
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.33 E-value=0.33 Score=50.72 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=34.8
Q ss_pred HHhccCCceEEecCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCC
Q 037205 189 RRLSRMKVLIFFYDVTC------FSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEA 248 (439)
Q Consensus 189 ~~l~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~ 248 (439)
..+-.++=+||||.-.+ .+.++..+..+ +| .||+.|.++....... ..++.+.+
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 33446888999997643 33344444433 24 5888899998888763 56666654
No 307
>PRK13975 thymidylate kinase; Provisional
Probab=95.32 E-value=0.016 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..|.|.|+.|+||||+|+.+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988865
No 308
>PRK14526 adenylate kinase; Provisional
Probab=95.32 E-value=0.052 Score=49.74 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=43.4
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH-HHHHH--------------HHHHHHhcCCCCCC---cHHHHHHHhcc--CCceEE
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR-YLLAT--------------KLISNLLKDENAIP---GIDLNFRRLSR--MKVLIF 199 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~-f~~~~--------------~ll~~l~~~~~~~~---~~~~l~~~l~~--~~~LlV 199 (439)
|.|+|++|+||||+|+.+...+.. ++... ..+..+.....-.+ ....+.+.+.. ..--+|
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~i 82 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFI 82 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEE
Confidence 679999999999999998866432 11011 11222222222111 33555555543 123467
Q ss_pred ecCC-CCHHHHHHHhcC
Q 037205 200 FYDV-TCFSQLESLMGS 215 (439)
Q Consensus 200 lDdv-~~~~~~~~l~~~ 215 (439)
||.+ .+.+|.+.|...
T Consensus 83 lDGfPR~~~Qa~~l~~~ 99 (211)
T PRK14526 83 LDGFPRNINQAKALDKF 99 (211)
T ss_pred EECCCCCHHHHHHHHHh
Confidence 7999 577777666543
No 309
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.31 E-value=0.051 Score=49.52 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=57.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHh--cc
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRL--SR 193 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l--~~ 193 (439)
..++++|.|+.|.||||+.+.+..-..- |+ +.+.+...+..... ..+ ....+...+ ..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~ 107 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYAD 107 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcC
Confidence 3478999999999999999987643221 22 22223222222211 111 112222222 35
Q ss_pred CCceEEecCCC---CHHH----HHHHhcCCCCCCCCcEEEEEeCchHHHHhcC
Q 037205 194 MKVLIFFYDVT---CFSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNWG 239 (439)
Q Consensus 194 ~~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 239 (439)
++-|+++|+.. +..+ ...+...+. ..|+.+|+||-+..++....
T Consensus 108 ~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 108 GDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 78899999972 2222 122222222 23789999999988877653
No 310
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.30 E-value=0.013 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|+|++|+||||||+.++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4789999999999999999987643
No 311
>PRK13946 shikimate kinase; Provisional
Probab=95.29 E-value=0.014 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.+.|.+.|++|+||||+|+.+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999988754
No 312
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.27 E-value=0.018 Score=52.63 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 133 ESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....+.|.|+|++|+|||||+..+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445788999999999999999988654
No 313
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.24 E-value=0.054 Score=54.89 Aligned_cols=22 Identities=50% Similarity=0.602 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-..++|+|++|.||||||+.+.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 3579999999999999999875
No 314
>PRK10867 signal recognition particle protein; Provisional
Probab=95.24 E-value=0.054 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=21.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|.++|.+|+||||+|..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36899999999999999887776544
No 315
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.23 E-value=0.025 Score=53.63 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.++...+........+|||.|.||+|||||.-.+...+..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~ 77 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE 77 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHH
Confidence 3445555445566789999999999999999887776643
No 316
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.23 E-value=0.035 Score=52.67 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
-..++|.|.+|+||||||+.+++....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~ 95 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAK 95 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHh
Confidence 356899999999999999999988763
No 317
>PLN02200 adenylate kinase family protein
Probab=95.21 E-value=0.018 Score=53.65 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.|.|++|+||||+|+.+...+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999987654
No 318
>PRK14527 adenylate kinase; Provisional
Probab=95.20 E-value=0.018 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.|.|++|.||||+|+.+++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 319
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.19 E-value=0.24 Score=54.97 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=90.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH----------HH------HH---------HHHHHHHhcCCCCC-CcHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR----------YL------LA---------TKLISNLLKDENAI-PGIDLNFRR 190 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~------~~---------~~ll~~l~~~~~~~-~~~~~l~~~ 190 (439)
..-+.|+|-+|.||||+...++-.... |+ .. ...+.......... .......+.
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence 347889999999999999887654432 21 00 11111111111111 122222578
Q ss_pred hccCCceEEecCCCCHHH------HHHHhcCCCCCCCCcEEEEEeCchHHHHhcCCCeEEEcCCCCHHHHHHHHH-----
Q 037205 191 LSRMKVLIFFYDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFS----- 259 (439)
Q Consensus 191 l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~----- 259 (439)
++..++|+++|.++.... ...+....++ -+.+.+|+|+|....-........+++..+.++.-.....
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~ 380 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD 380 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence 889999999999875432 2222222221 2478999999966544333333444555554443332221
Q ss_pred ---HhhhcCCCCC-cch-HH---HHHHHHHHhCCCcHHHHHHHHhhc------CCCHHHHHHHHHHHhc
Q 037205 260 ---RHAFKRNHPD-VGY-EK---LSSNVMKYVQGVPLALKVLGCFLY------KREKEVWESAINKLQR 314 (439)
Q Consensus 260 ---~~a~~~~~~~-~~~-~~---~~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~l~~ 314 (439)
...++..... ..+ .. -..+-++.....|+.|.+.+..-. ....+-++.+++.+-.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 1111111111 000 01 122333444788999988875443 1346667777776544
No 320
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.19 E-value=0.015 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.-.+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999988765
No 321
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.19 E-value=0.021 Score=51.78 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....+|.|+|++|+||||||+.+...+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999887653
No 322
>PRK04182 cytidylate kinase; Provisional
Probab=95.19 E-value=0.016 Score=51.16 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+|+|.|++|+||||+|+.+++.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999887654
No 323
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.18 E-value=0.016 Score=52.19 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+|+|-||=|+||||||+.+.+++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999988753
No 324
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.16 E-value=0.015 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|.++|++|+||||+|+.+...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987764
No 325
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.16 E-value=0.018 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|+|+.|.||||+|+.+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999987753
No 326
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.14 E-value=0.012 Score=52.75 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=53.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHhcc--CCc
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRLSR--MKV 196 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~~--~~~ 196 (439)
++.|+|..|.||||+.+.+.-.... |+ ...+++..+..... ..+ ....+...+.. ++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 3679999999999999998733221 22 11111111111111 111 23334444544 889
Q ss_pred eEEecCCCC---HHH----HHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205 197 LIFFYDVTC---FSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 197 LlVlDdv~~---~~~----~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 238 (439)
|+++|+... ... ...+...+.. ..++.+|++|.+..+....
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 999999832 221 1222222211 1367899999988766543
No 327
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.13 E-value=0.017 Score=49.86 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999888764
No 328
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.12 E-value=0.023 Score=59.06 Aligned_cols=48 Identities=29% Similarity=0.288 Sum_probs=36.8
Q ss_pred cccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 116 LVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 116 ~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
++-=.+.++++..||.. +....+++.++|++|+||||.++.+++.+..
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44345567888888864 3334679999999999999999999988654
No 329
>PRK13948 shikimate kinase; Provisional
Probab=95.12 E-value=0.019 Score=51.27 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+.|.++|+.|+||||+++.+.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999987654
No 330
>PHA02244 ATPase-like protein
Probab=95.12 E-value=0.041 Score=54.25 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCCCcccccchHHH----HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 112 NKSQLVGVESRVEE----IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 112 ~~~~~vGr~~~~~~----l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.+..++|....... +.+++.. + .-|.|+|++|+|||+||+++++....
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~---~-~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA---N-IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc---C-CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557776655543 3333331 2 24678999999999999999987654
No 331
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.09 E-value=0.032 Score=54.62 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.+.+........+|+|.|.+|+|||||+..+...+.
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444432234678999999999999999998766554
No 332
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.07 E-value=0.017 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEecCCCChhHHHHHHHHhHHh
Q 037205 140 LGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
|.|.|++|+||||+|+.++..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988754
No 333
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.06 E-value=0.086 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++.++|.+|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999888876643
No 334
>PRK14532 adenylate kinase; Provisional
Probab=95.06 E-value=0.017 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=21.0
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|.|++|+||||+|+.++.....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~ 26 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGM 26 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999877643
No 335
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.04 E-value=0.02 Score=50.24 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|+|.|++|+||||+|+.+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987654
No 336
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.03 E-value=0.029 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
++|+|.|=||+||||+|..+..-+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 478888999999999999877654
No 337
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.03 E-value=0.033 Score=46.20 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=33.5
Q ss_pred Ccccccc----hHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 115 QLVGVES----RVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 115 ~~vGr~~----~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++|..- .++.|...+.. .+++.-|+..+|.+|+|||.+++.+++.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 3555543 34444444543 345678999999999999999999888753
No 338
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.02 E-value=0.025 Score=54.26 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....+|||.|..|+||||+|+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999865443
No 339
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.01 E-value=0.063 Score=55.07 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=31.6
Q ss_pred chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-+.++.++|..+-..-.++.|.|.+|+|||||+.++.....
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a 119 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA 119 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345566666654444567899999999999999999876654
No 340
>PRK14531 adenylate kinase; Provisional
Probab=94.99 E-value=0.022 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|.|+|++|.||||+|+.+...+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 341
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.99 E-value=0.028 Score=56.33 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCcccccchHHHHHhhhcc---------C---CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLSV---------E---SKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..++|.+..++.+...+.. . ......|.++|++|+|||+||+.+...+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5588888888877766632 0 011367899999999999999999877543
No 342
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.98 E-value=0.017 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.|+|+|++|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 343
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.092 Score=51.98 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=51.2
Q ss_pred chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----HH----HHHHH-HH--HHhcCCCCCC-----c
Q 037205 121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----YL----LATKL-IS--NLLKDENAIP-----G 183 (439)
Q Consensus 121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~----~~~~l-l~--~l~~~~~~~~-----~ 183 (439)
..+.++.+.|..+--.-.+|.|-|-||||||||..+++.++.. |+ ...++ ++ .+.-...++. .
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~ 156 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETN 156 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcC
Confidence 3455666666533233568999999999999999999998875 44 11111 11 1111111221 4
Q ss_pred HHHHHHHhc-cCCceEEecCC
Q 037205 184 IDLNFRRLS-RMKVLIFFYDV 203 (439)
Q Consensus 184 ~~~l~~~l~-~~~~LlVlDdv 203 (439)
.+.+.+.+. .++-|+|+|-+
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred HHHHHHHHHhcCCCEEEEecc
Confidence 555555555 47789999988
No 344
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.98 E-value=0.021 Score=50.22 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|+|++|+||||+|+.+.+.+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999987654
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.94 E-value=0.044 Score=54.19 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=57.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH------HHH--HHHHH-H---H-HhcCCC---CCCcHHHHHHHhccCCceEEe
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR------YLL--ATKLI-S---N-LLKDEN---AIPGIDLNFRRLSRMKVLIFF 200 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~--~~~ll-~---~-l~~~~~---~~~~~~~l~~~l~~~~~LlVl 200 (439)
...|.|.|+.|.||||++..+.+.+.. +.+ ..++. . . +..... ..+..+.++..|+..+=.|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 467999999999999999988765432 100 00000 0 0 000011 112456678888899999999
Q ss_pred cCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHH
Q 037205 201 YDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV 234 (439)
Q Consensus 201 Ddv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 234 (439)
|++.+.+......... ..|..++.|.-....
T Consensus 202 gEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 202 GEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred eCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 9999887765533321 245556666654433
No 346
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.94 E-value=0.022 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEecCCCChhHHHHHHHHhHH
Q 037205 140 LGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|.|+|.+|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999988665
No 347
>PRK15453 phosphoribulokinase; Provisional
Probab=94.93 E-value=0.027 Score=53.50 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....+|+|.|.+|.||||+|+.+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999998876543
No 348
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.92 E-value=0.021 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=17.7
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
|+|+|.+|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999877
No 349
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.92 E-value=0.02 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+.|+|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999987654
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.89 E-value=0.027 Score=51.41 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++++|+++|..|+|||||...+.+..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999877653
No 351
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.85 E-value=0.031 Score=58.20 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=25.1
Q ss_pred CCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 133 ESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 133 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++..+|+|.|.+|.||||||+.+....
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44568899999999999999999987664
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.84 E-value=0.084 Score=54.10 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556666654434456899999999999999999987764
No 353
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.84 E-value=0.023 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|.|++|+||||+|+.+.+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 889999999999999999888653
No 354
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.83 E-value=0.038 Score=58.26 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=34.3
Q ss_pred CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+-|-+..+.|.+........-.+|.|+|++|+||||+|+.++..+.
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 345555555555555544344456889999999999999999988765
No 355
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.82 E-value=0.025 Score=51.34 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=53.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHh--ccCC
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRL--SRMK 195 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l--~~~~ 195 (439)
.+++|+|..|.|||||.+.+...... |+ ...+++..+..... ... ....+...+ ...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 68999999999999999998843221 22 00111111111100 011 122222222 2578
Q ss_pred ceEEecCCCC---HH---HH-HHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205 196 VLIFFYDVTC---FS---QL-ESLMGSLDWLTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 196 ~LlVlDdv~~---~~---~~-~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 238 (439)
-++++|+... .. .+ ..+...+. ..++.+|++|.+..+...+
T Consensus 110 ~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~ 157 (202)
T cd03243 110 SLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLP 157 (202)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHh
Confidence 9999999832 21 11 22232222 2367799999988776654
No 356
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.81 E-value=0.028 Score=43.68 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.+.|.+|+||||++..+...+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999998776653
No 357
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.81 E-value=0.027 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=20.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+.|.|+|.||+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999887665
No 358
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.80 E-value=0.026 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+++|+|+.|+|||||+..+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999887754
No 359
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.78 E-value=0.036 Score=50.14 Aligned_cols=43 Identities=30% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|.+..+..+.-... +..-+.++|.+|+|||+||+.+-.-
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 467888877766665544 2346889999999999999987643
No 360
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.023 Score=52.25 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
--++||+|.+|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45799999999999999998763
No 361
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.71 E-value=0.028 Score=50.42 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.|+|++|+|||||++.+.....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 357899999999999999999987653
No 362
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.71 E-value=0.026 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+|.+.|.+|+||||+|+.+..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998887
No 363
>PLN02459 probable adenylate kinase
Probab=94.70 E-value=0.051 Score=51.17 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=45.7
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH-HHHHHHH--------------HHHHhcCCCCCC---cHHHHHHHhcc----CCc
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR-YLLATKL--------------ISNLLKDENAIP---GIDLNFRRLSR----MKV 196 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~l--------------l~~l~~~~~~~~---~~~~l~~~l~~----~~~ 196 (439)
.|.|.|+||+||||+|+.+...+.. ++....+ +........-.+ ....+.+.+.. ..-
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~ 110 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGES 110 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCc
Confidence 3677899999999999999887653 2211111 222222222122 44556666643 346
Q ss_pred eEEecCC-CCHHHHHHHhc
Q 037205 197 LIFFYDV-TCFSQLESLMG 214 (439)
Q Consensus 197 LlVlDdv-~~~~~~~~l~~ 214 (439)
-+|||.+ .+..|.+.|-.
T Consensus 111 g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 111 GFILDGFPRTVRQAEILEG 129 (261)
T ss_pred eEEEeCCCCCHHHHHHHHh
Confidence 7899999 56777666643
No 364
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.69 E-value=0.027 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+|||+|+.|+||||.|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998776
No 365
>PRK01184 hypothetical protein; Provisional
Probab=94.69 E-value=0.026 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+|+|+|++|+||||+|+ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4444
No 366
>PLN02348 phosphoribulokinase
Probab=94.69 E-value=0.033 Score=55.28 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+...+|+|.|.+|.||||+|+.+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999987765
No 367
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.68 E-value=0.052 Score=52.64 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+.+-+........+|+|.|.+|+|||||+..+.....
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333433344678999999999999999998776543
No 368
>PF13245 AAA_19: Part of AAA domain
Probab=94.67 E-value=0.035 Score=41.88 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=17.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++.|.|.+|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999666554433
No 369
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.3 Score=47.73 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=35.6
Q ss_pred CCcccccchHHHHHhhhccC------------CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLSVE------------SKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.++-|.+..++++.+..-.. -...+-|.++|++|.|||-||++++.+...
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC
Confidence 45566676666666643210 123567889999999999999999988654
No 370
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.66 E-value=0.029 Score=52.40 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...+|.++||+|.||||..+.++..+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 4567888999999999999999888765
No 371
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.65 E-value=0.036 Score=56.02 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCcccccchHHHHHhhhc-------cC-C------CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLS-------VE-S------KDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~-------~~-~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+||.+..++.+...+. .. . -.-+.+.++|++|+|||+||+.++.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 457888887777754331 00 0 01356889999999999999999876543
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.62 E-value=0.037 Score=50.46 Aligned_cols=32 Identities=25% Similarity=0.164 Sum_probs=24.6
Q ss_pred hccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 130 LSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 130 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|..+-..-.++.|+|.+|+|||++|.+++...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33333446799999999999999999877554
No 373
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.62 E-value=0.033 Score=54.88 Aligned_cols=50 Identities=24% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+.+||-+..+..|...+. +....-|.|.|..|.||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345779999987777776655 34556677999999999999999977654
No 374
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.62 E-value=0.045 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
++|+|.|=||+||||++..++..+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 678888999999999999877654
No 375
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.62 E-value=0.049 Score=50.29 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.|.++|..+-..-.++.|+|.+|+|||++|.+++...
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445554333446799999999999999999887654
No 376
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.61 E-value=0.066 Score=49.47 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=54.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHh--cc
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRL--SR 193 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l--~~ 193 (439)
+.+++.|+|+.|.||||+.+.+..-.-- |+ ....++..+..... ..+ ....+...+ ..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~ 108 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSAT 108 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence 4678999999999999999987743211 22 11222222111111 111 122233334 35
Q ss_pred CCceEEecCC---CCHHHH----HHHhcCCCCCCCCcEEEEEeCchHHHHh
Q 037205 194 MKVLIFFYDV---TCFSQL----ESLMGSLDWLTPVSRIILTTRNKQVLRN 237 (439)
Q Consensus 194 ~~~LlVlDdv---~~~~~~----~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 237 (439)
.+-|++||.. .+..+- ..+...+.. ..|+.+|+||-...+...
T Consensus 109 ~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~ 158 (222)
T cd03285 109 ENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTAL 158 (222)
T ss_pred CCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHH
Confidence 7889999999 332221 111112111 246789999987666554
No 377
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.60 E-value=0.034 Score=53.34 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++++|+|++|+||||++..++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999877654
No 378
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.58 E-value=0.027 Score=48.50 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.|+|.+|+||||++..+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999987764
No 379
>PRK08356 hypothetical protein; Provisional
Probab=94.58 E-value=0.032 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
..+|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999984
No 380
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.56 E-value=0.049 Score=52.82 Aligned_cols=53 Identities=25% Similarity=0.207 Sum_probs=40.2
Q ss_pred CCCCCcccccchHH---HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 111 DNKSQLVGVESRVE---EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 111 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.....+||.....+ -+.++...+.-.-+.|.|.|++|.|||+||..+.+.+..
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45678999765544 345555555445688999999999999999999988764
No 381
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.036 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998776665
No 382
>PRK06761 hypothetical protein; Provisional
Probab=94.52 E-value=0.03 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|.|.|++|+||||+|+.+++.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988764
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.079 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.116 Sum_probs=21.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988654
No 384
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.51 E-value=0.029 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEecCCCChhHHHHHHHHhHHh
Q 037205 140 LGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
|.|.|++|+||||+|+.+...+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999987654
No 385
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.50 E-value=0.026 Score=50.19 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~ 159 (439)
+|+|+|++|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998765
No 386
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.50 E-value=0.031 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|.|++|+||||+|+.++..+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999877653
No 387
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.49 E-value=0.039 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.++|++|+||||++..++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999998887654
No 388
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.49 E-value=0.048 Score=53.24 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=42.9
Q ss_pred CCCcccccchHHHHHhhhccC----CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 113 KSQLVGVESRVEEIESLLSVE----SKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...|+|.+..++++.+.|... ...-+++.+.|+.|.||||||..+-+-+..
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 357999999999999988752 234689999999999999999988777665
No 389
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.49 E-value=0.035 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.435 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|.|.|+.|+||||+++.+.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987764
No 390
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.47 E-value=0.032 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+++|+|.+|.|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999887653
No 391
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.028 Score=53.42 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=55.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHHHHHh----ccCCceEEecCCCCH---
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLNFRRL----SRMKVLIFFYDVTCF--- 206 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~--- 206 (439)
+..++|||++|.|||-||+.|+..... |+ ....+.+.-.++ ....+++.. ...++.|.+|+++-.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE-----saRlIRemf~yA~~~~pciifmdeiDAigGR 240 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE-----SARLIRDMFRYAREVIPCIIFMDEIDAIGGR 240 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc-----HHHHHHHHHHHHhhhCceEEeehhhhhhccE
Confidence 578999999999999999999988776 43 222222211111 122233322 345688899998421
Q ss_pred ----------H---HHHHHhcCCCCC--CCCcEEEEEeCchHHHH
Q 037205 207 ----------S---QLESLMGSLDWL--TPVSRIILTTRNKQVLR 236 (439)
Q Consensus 207 ----------~---~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~ 236 (439)
+ .+-.|+.....+ -...++|+||..+..+.
T Consensus 241 r~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 241 RFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred EeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 1 122333333322 23467899888776543
No 392
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.46 E-value=0.047 Score=52.19 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.9
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+..+|.|.|.+|.|||||+..+.+.+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356899999999999999999998887643
No 393
>PRK13695 putative NTPase; Provisional
Probab=94.46 E-value=0.035 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|+|+|.+|+|||||++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999887765
No 394
>PRK02496 adk adenylate kinase; Provisional
Probab=94.46 E-value=0.033 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+.|.|++|.||||+|+.+...+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987753
No 395
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.43 E-value=0.043 Score=51.97 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-.++.|.|.+|+|||++|.+++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999987654
No 396
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.42 E-value=0.17 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-..++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998763
No 397
>PRK14528 adenylate kinase; Provisional
Probab=94.42 E-value=0.037 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+.|.|.|++|+||||+|+.+...+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999987653
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.41 E-value=0.044 Score=52.04 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=53.7
Q ss_pred hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-H---HHHHHHHHh----cCCCCCCcHHHHHH
Q 037205 122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YL-L---ATKLISNLL----KDENAIPGIDLNFR 189 (439)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-~---~~~ll~~l~----~~~~~~~~~~~l~~ 189 (439)
.++.+..++. ....+|.|.|..|.||||++..+.+.+.. .+ + .+-.+..+. .........+.++.
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~ 144 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRA 144 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHH
Confidence 3344444443 23457999999999999999987665532 00 0 000000000 00001224567788
Q ss_pred HhccCCceEEecCCCCHHHHHHHhc
Q 037205 190 RLSRMKVLIFFYDVTCFSQLESLMG 214 (439)
Q Consensus 190 ~l~~~~~LlVlDdv~~~~~~~~l~~ 214 (439)
.|+..+=.|+++++.+.+....+..
T Consensus 145 ~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 145 ILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred HhccCCCEEEeccCCCHHHHHHHHH
Confidence 8888899999999998886554443
No 399
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.41 E-value=0.037 Score=44.66 Aligned_cols=22 Identities=36% Similarity=0.370 Sum_probs=19.0
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-..++|.|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999743
No 400
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.39 E-value=0.057 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=21.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+.++|+|.|-||+||||++..+...+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~l 28 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAAL 28 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHH
Confidence 35788888999999999998766554
No 401
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.38 E-value=0.059 Score=57.39 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999987643
No 402
>PRK12338 hypothetical protein; Provisional
Probab=94.37 E-value=0.037 Score=53.65 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+|.|.|.+|+||||+|+.++.++..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~ 30 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNI 30 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 468999999999999999999988653
No 403
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.33 E-value=0.049 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++++|+|..|+|||||+..+...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999887654
No 404
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.33 E-value=0.044 Score=53.90 Aligned_cols=46 Identities=28% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..++|.+..+..+...+..+ +-+.+.|.+|+|||+||+.++..+..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~ 69 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGL 69 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCC
Confidence 34889888877777666532 35789999999999999999888764
No 405
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.30 E-value=0.059 Score=46.90 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=29.1
Q ss_pred chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+++|.+.|. + +++.++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45777887775 3 688999999999999999877653
No 406
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.29 E-value=0.047 Score=49.07 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=22.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..|.|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999887764
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.29 E-value=0.2 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+|+|+|.+|+||||++..++..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998877654
No 408
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.29 E-value=0.043 Score=52.31 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|+|.+|+|||||+..+...+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~ 26 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLS 26 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999877654
No 409
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.27 E-value=0.05 Score=49.91 Aligned_cols=36 Identities=33% Similarity=0.278 Sum_probs=22.5
Q ss_pred hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+.+...+.. ..+..|+|+||.||||++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34455555542 1278899999999998777655443
No 410
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.26 E-value=0.053 Score=54.68 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=35.3
Q ss_pred CCCcccccchHHHHHhhh-------cc---CC--C----CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 113 KSQLVGVESRVEEIESLL-------SV---ES--K----DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L-------~~---~~--~----~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++|.+..++.+...+ .. .. + ....|.++|++|+|||+||+.++..+.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 355788888887775443 11 01 1 125789999999999999999987654
No 411
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.26 E-value=0.037 Score=58.28 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..-++..++|++|+||||||..++++..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC
Confidence 4468999999999999999999887753
No 412
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.044 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.++.|.|++|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999876
No 413
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.22 E-value=0.091 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-..|+|+|..|+|||||++.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999987643
No 414
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.20 E-value=0.053 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
|..+|..+-..-.++.|+|.+|+|||+||.+++..
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44445433344678999999999999999987643
No 415
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.56 Score=50.07 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=88.3
Q ss_pred CCcccccchHHHHHhhhccCC-------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCc
Q 037205 114 SQLVGVESRVEEIESLLSVES-------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPG 183 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~ 183 (439)
....+++..+..+.+.|.... .-..++.++|.+|+||||+++.++..+.. ++ -..++..+..+.. +...
T Consensus 401 ~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~-etkl 479 (953)
T KOG0736|consen 401 LSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT-ETKL 479 (953)
T ss_pred CCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh-HHHH
Confidence 445677777777777776421 23578999999999999999999988764 11 1111111100000 0001
Q ss_pred HHHHHHHhccCCceEEecCCC-------CHHH------HHHHhc-C-CCCCCCCcEEEEEeC-chHHHHhcC--CCeEEE
Q 037205 184 IDLNFRRLSRMKVLIFFYDVT-------CFSQ------LESLMG-S-LDWLTPVSRIILTTR-NKQVLRNWG--VSKIYE 245 (439)
Q Consensus 184 ~~~l~~~l~~~~~LlVlDdv~-------~~~~------~~~l~~-~-~~~~~~gs~IiiTTR-~~~v~~~~~--~~~~~~ 245 (439)
.....+.-+-.+..|.|-|++ ..+. ++.++. . +....++.-++.||- .+++..... ..+.++
T Consensus 480 ~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~ 559 (953)
T KOG0736|consen 480 QAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIE 559 (953)
T ss_pred HHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhcc
Confidence 111222222345555554442 1111 222322 1 111223333444443 333322221 346788
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205 246 MEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 246 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 288 (439)
++.|++++=.++|+.+.-... -+.....+.++.+|.|+-+
T Consensus 560 ~~~lse~qRl~iLq~y~~~~~---~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 560 VPALSEEQRLEILQWYLNHLP---LNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred CCCCCHHHHHHHHHHHHhccc---cchHHHHHHHHHhcCCCCH
Confidence 999999999999998873322 1223335566677766533
No 416
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.12 Score=47.32 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHHHhccCCceEEecCCCCHHHHHHH---hcCCC-CCCCCcEEEEEeCchHHHHhcCCCeEEE
Q 037205 184 IDLNFRRLSRMKVLIFFYDVTCFSQLESL---MGSLD-WLTPVSRIILTTRNKQVLRNWGVSKIYE 245 (439)
Q Consensus 184 ~~~l~~~l~~~~~LlVlDdv~~~~~~~~l---~~~~~-~~~~gs~IiiTTR~~~v~~~~~~~~~~~ 245 (439)
...+.+.+--++-|.|||..++--+++++ ..... -..+|+-+++.|....++.....+.++-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34555556668899999999764333222 11111 0235777888889899988876555543
No 417
>PRK13768 GTPase; Provisional
Probab=94.13 E-value=0.05 Score=51.32 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.++.|.|.||+||||++..+...+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578899999999999998866554
No 418
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.11 E-value=0.038 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+++|+|..|+|||||.+.++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 579999999999999999877554
No 419
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.08 E-value=0.038 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+++|.+|+|||||+..+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.07 E-value=0.051 Score=50.17 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=57.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH-hH----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHhc--c
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI-SR----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRLS--R 193 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~-~~----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~--~ 193 (439)
..+++.|.|+.|.||||+.+.+.--. .. ++ ...+++..+..... ..+ ....+...++ +
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 35688999999999999999887622 11 11 12222222222222 111 2233344443 4
Q ss_pred CCceEEecCCC---C-HHH---HHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205 194 MKVLIFFYDVT---C-FSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 194 ~~~LlVlDdv~---~-~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 238 (439)
++-|++||+.. + .+. ...+...+.. ..++.+|++|.+..+....
T Consensus 110 ~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 110 SRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 78999999972 1 111 1223322221 1478999999998876543
No 421
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.06 E-value=0.048 Score=47.47 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.++++|+|..|+|||||...+...++.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~ 28 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA 28 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHh
Confidence 368999999999999999998777653
No 422
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.03 E-value=0.047 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=21.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
|.|+|+|-||+||||+|..++..+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA 25 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH
Confidence 4689999999999999998776653
No 423
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.03 E-value=0.068 Score=52.55 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.9
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+||.+..+..+.-.+.. +...-+.|.|.+|.|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~--~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID--PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999888777555442 234557799999999999999987554
No 424
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=94.02 E-value=0.094 Score=44.87 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=27.9
Q ss_pred hHHHHHhhhcc--CCCCeeEEEEecCCCChhHH--HHHHHHhHHh
Q 037205 122 RVEEIESLLSV--ESKDVYALGIWGIGGIGKTT--IARATFDKIS 162 (439)
Q Consensus 122 ~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTt--LA~~v~~~~~ 162 (439)
++--|...|.+ ..++..+|||-|||-+|||. +|..||..-+
T Consensus 37 eLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKr 81 (192)
T PF11868_consen 37 ELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANKR 81 (192)
T ss_pred HhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCce
Confidence 45555555432 35678999999999999995 4555555444
No 425
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.02 E-value=0.048 Score=53.52 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=35.3
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+...++|.+..++.+.-.+.. .+..-+.+.|.+|.||||+|+.+..-+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 346789999888877743321 123348899999999999999986654
No 426
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.00 E-value=0.034 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-..++|.|..|.|||||++.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999986644
No 427
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.99 E-value=0.044 Score=55.23 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
-++.|+|+|.+|.||||||+.+++....
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999987544
No 428
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.96 E-value=0.12 Score=51.50 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.8
Q ss_pred hhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 129 LLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 129 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.|..+-+--..|+|+|+.|+|||||.+.+.-.+
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 344444445679999999999999999877544
No 429
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.96 E-value=0.053 Score=53.16 Aligned_cols=53 Identities=28% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCCCCcccccchHHH---HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 111 DNKSQLVGVESRVEE---IESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.....+||.....+. +.++...+.-.-+.|.+.|++|.|||+||..+.+.+..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 445789998765554 34444433334588999999999999999999888764
No 430
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.95 E-value=0.074 Score=49.63 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|.++|..+-..-.++.|.|.+|.|||+||.++...
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444556544455679999999999999999986544
No 431
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.94 E-value=0.17 Score=45.37 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=55.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHHh-------cCCC---CCC--------
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNLL-------KDEN---AIP-------- 182 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l~-------~~~~---~~~-------- 182 (439)
....|-|+|-.|-||||.|..+.-+... |+ --...+..+. +... ..+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 3467899999999999999988777654 33 1111222210 0000 000
Q ss_pred --cHHHHHHHhcc-CCceEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCchH
Q 037205 183 --GIDLNFRRLSR-MKVLIFFYDVT--------CFSQLESLMGSLDWLTPVSRIILTTRNKQ 233 (439)
Q Consensus 183 --~~~~l~~~l~~-~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 233 (439)
..+..++.+.. +-=|+|||.+. +.+++-.++.. ..++..||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 23444555544 44599999983 23334344433 346779999999763
No 432
>PLN02165 adenylate isopentenyltransferase
Probab=93.94 E-value=0.05 Score=52.97 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-.+|+|+|+.|+||||||..++..+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 345899999999999999999887753
No 433
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.92 E-value=0.038 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-|+|+|++|+|||||+.++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 5688999999999999999876643
No 434
>PHA02774 E1; Provisional
Probab=93.92 E-value=0.093 Score=54.58 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=28.4
Q ss_pred hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-+..+..+|. +..+..-+.|+|++|.|||.+|..+.+-+
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L 458 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFL 458 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555554 33345689999999999999999877664
No 435
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.92 E-value=0.046 Score=44.63 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
|+|.|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999988753
No 436
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.91 E-value=0.038 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.1
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
...+.|||.+|+||||+|+.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568999999999999999864
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.91 E-value=0.043 Score=48.84 Aligned_cols=22 Identities=32% Similarity=0.126 Sum_probs=19.2
Q ss_pred EEEecCCCChhHHHHHHHHhHH
Q 037205 140 LGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+.|.|.+|+|||+||.++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999886654
No 438
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.90 E-value=0.086 Score=51.25 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.4
Q ss_pred chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.....+...|.. -+.|.|.|.+|+||||+|+.++..+..
T Consensus 52 ~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 52 ATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCC
Confidence 344556666642 245899999999999999999988754
No 439
>PLN02796 D-glycerate 3-kinase
Probab=93.88 E-value=0.05 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..-+|+|.|..|+|||||++.+...+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999877654
No 440
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.86 E-value=0.038 Score=51.60 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.8
Q ss_pred EecCCCChhHHHHHHHHhHHh
Q 037205 142 IWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 142 I~G~gGiGKTtLA~~v~~~~~ 162 (439)
|+|++|+||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999887654
No 441
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.86 E-value=0.054 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++++.|.+|+||||++..+.....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~ 24 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALR 24 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999998876653
No 442
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.83 E-value=0.067 Score=47.72 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++.|.|.+|.||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999887754
No 443
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.077 Score=46.50 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.5
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+...+|=+.|++|.||||+|.+++..+..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 34568888999999999999999888754
No 444
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.83 E-value=0.068 Score=49.28 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=26.9
Q ss_pred HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.|.++|..+-..-.++.|+|.+|+|||+||.+++..
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 444555433345679999999999999999987654
No 445
>PRK13808 adenylate kinase; Provisional
Probab=93.82 E-value=0.13 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred EEEecCCCChhHHHHHHHHhHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
|.|+|+||+||||+++.+...+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 778999999999999999877653
No 446
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.23 Score=54.33 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=60.6
Q ss_pred CCcccccchHHHHHhhhccC---C---CCeeEEEEecCCCChhHHHHHHHHhHHhH----HH-----HHHHHHHHHhcCC
Q 037205 114 SQLVGVESRVEEIESLLSVE---S---KDVYALGIWGIGGIGKTTIARATFDKISR----YL-----LATKLISNLLKDE 178 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~---~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~-----~~~~ll~~l~~~~ 178 (439)
..++|.+..+..|.+.+... . ...-.+.+.|+.|+|||-||++++..+.. |+ -..+ .+.+.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vskligsp 640 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VSKLIGSP 640 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-hhhccCCC
Confidence 44677777777777766431 1 13567778999999999999998877644 33 1112 34444444
Q ss_pred CCC---CcHHHHHHHhccCCc-eEEecCCCCH
Q 037205 179 NAI---PGIDLNFRRLSRMKV-LIFFYDVTCF 206 (439)
Q Consensus 179 ~~~---~~~~~l~~~l~~~~~-LlVlDdv~~~ 206 (439)
+.. .....+.+.++.+++ +++||||+..
T Consensus 641 ~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 641 PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 422 255678888888886 5557999754
No 447
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.79 E-value=0.063 Score=52.26 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=24.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
....|+|+|++|+||||+++.+...+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~ 159 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGV 159 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999887654
No 448
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.79 E-value=0.067 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|.|.|+.|+||||+++.+.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999887653
No 449
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.78 E-value=0.057 Score=49.69 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987665
No 450
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.78 E-value=0.59 Score=48.09 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=37.1
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|......++.+.+..-......+.|.|-+|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588988888888777654333344678999999999999999876543
No 451
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.78 E-value=0.061 Score=49.21 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=20.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|+|+|.|-||+||||++..++..+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 478999999999999999877654
No 452
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.77 E-value=0.069 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+.+.|+.|+|||.||+.+++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788999999999999999887765
No 453
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.75 E-value=0.047 Score=47.17 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988765
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.053 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
--.|+|+|++|+|||||.+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998863
No 455
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.23 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++++|++|.||||+|..+-+-
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999866443
No 456
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.74 E-value=0.057 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..-+|.|.|.+|+||||+|..+++++.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999998864
No 457
>PF13479 AAA_24: AAA domain
Probab=93.70 E-value=0.04 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=17.6
Q ss_pred eEEEEecCCCChhHHHHHHH
Q 037205 138 YALGIWGIGGIGKTTIARAT 157 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v 157 (439)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999975
No 458
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.70 E-value=0.059 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+.|+|+|+.|.||||+|+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998776
No 459
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.69 E-value=0.17 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++.|.|.+|+||||+|..+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 588999999999999999987754
No 460
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.69 E-value=0.054 Score=49.07 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.0
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-.++.|+|++|+|||||.+.+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999998653
No 461
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.67 E-value=0.055 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 46889999999999999999887664
No 462
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.67 E-value=0.054 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=18.9
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|.|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3779999999999999988754
No 463
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.66 E-value=0.074 Score=48.97 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=57.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-----HH--------HHHHHHHHHhcCCC---CCC----cHHHHHHHhc--cC
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-----YL--------LATKLISNLLKDEN---AIP----GIDLNFRRLS--RM 194 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f~--------~~~~ll~~l~~~~~---~~~----~~~~l~~~l~--~~ 194 (439)
.++++|.|+.|.||||+.+.+.-..-- |+ ....++..+..... ..+ ....+...++ .+
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 468899999999999999987754321 33 11122222221111 111 2333444444 57
Q ss_pred CceEEecCCC---CHHH----HHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205 195 KVLIFFYDVT---CFSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 195 ~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 238 (439)
+-|++||... +..+ ...+...+.. ..++.+|++|.+..+....
T Consensus 110 ~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 110 DSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHh
Confidence 8899999983 2222 1121222221 1378999999988876665
No 464
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.65 E-value=0.063 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++|.|+|+.|+|||||+..+.....
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46889999999999999999987754
No 465
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.62 E-value=0.094 Score=52.52 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998887653
No 466
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.62 E-value=0.18 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.-..++|+|..|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998764
No 467
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.61 E-value=0.14 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
--++.|+|.+|.||||+.+.+......
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~ 435 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKG 435 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhc
Confidence 457899999999999999988765543
No 468
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.60 E-value=0.076 Score=43.67 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.2
Q ss_pred EEEecCCCChhHHHHHHHHhHH
Q 037205 140 LGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|.+.|.||+||||++..++..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999877654
No 469
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.60 E-value=0.049 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999987655
No 470
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.60 E-value=0.055 Score=50.30 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=21.8
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..-.++.|.|.+|.||||||.+++...
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999987766544
No 471
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.58 E-value=0.073 Score=44.15 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=22.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-.+|.+.|.=|.||||+++.++..+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999887654
No 472
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.57 E-value=0.074 Score=51.80 Aligned_cols=24 Identities=50% Similarity=0.498 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++.+.|-||+||||+|.+.+-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~ 25 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK 25 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH
Confidence 478999999999999999885544
No 473
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.56 E-value=0.096 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+++.++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988776654
No 474
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.55 E-value=0.062 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+.|.|+|++|+|||||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3678999999999999999998875
No 475
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.52 E-value=0.11 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-..++|+|..|.|||||++.+..-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999988644
No 476
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.51 E-value=0.12 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.-+-.||+|.+|.||||+.+.++.+.
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 34678999999999999999988664
No 477
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.50 E-value=0.29 Score=46.54 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=53.7
Q ss_pred hHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 037205 122 RVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAIPG----IDLNFRR 190 (439)
Q Consensus 122 ~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~~~----~~~l~~~ 190 (439)
.+..|...+.. .+.+.-+++.+|.+|.||.-.++.+++.... || ..+.... ..+.... ...++++
T Consensus 94 Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V--~~fvat~--hFP~~~~ie~Yk~eL~~~ 169 (344)
T KOG2170|consen 94 VVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV--HHFVATL--HFPHASKIEDYKEELKNR 169 (344)
T ss_pred HHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH--HHhhhhc--cCCChHHHHHHHHHHHHH
Confidence 34444554443 3456789999999999999999999988765 33 0000000 0011111 1222232
Q ss_pred hc-----cCCceEEecCCCCH--HHHHHHhcCCC
Q 037205 191 LS-----RMKVLIFFYDVTCF--SQLESLMGSLD 217 (439)
Q Consensus 191 l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~ 217 (439)
++ -.+-|+|+|+++.. ..++.+.+.+.
T Consensus 170 v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 170 VRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 22 37899999999854 34666666554
No 478
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.49 E-value=0.068 Score=51.88 Aligned_cols=24 Identities=42% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+++.+.|-||+||||+|...+-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 678899999999999998866543
No 479
>PRK06851 hypothetical protein; Provisional
Probab=93.48 E-value=0.31 Score=48.33 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-+++.|.|.+|+|||||++.++....
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999887653
No 480
>PRK07429 phosphoribulokinase; Provisional
Probab=93.48 E-value=0.082 Score=51.77 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=24.2
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.....+|+|.|.+|.||||+|+.+...+.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 34577999999999999999998776543
No 481
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.47 E-value=0.069 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+++++|++|+||||++..+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 482
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.47 E-value=0.11 Score=46.98 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH-----------HHHHHHHHHHHhcCCCCCCcHHHHHHHh----------ccC
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR-----------YLLATKLISNLLKDENAIPGIDLNFRRL----------SRM 194 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~~~~~ll~~l~~~~~~~~~~~~l~~~l----------~~~ 194 (439)
+-+++.|.|.+|.||||+++.+...+.. .-....+....... ...+..+.... ..+
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~~~~~~~ 93 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE---AQTIHSFLYRIPNGDDEGRPELPK 93 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS----EEEHHHHTTEECCEECCSSCC-TS
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc---hhhHHHHHhcCCcccccccccCCc
Confidence 3467889999999999999988766654 11222222222100 00111110000 123
Q ss_pred CceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeC
Q 037205 195 KVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTR 230 (439)
Q Consensus 195 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 230 (439)
.-+||+|++... .++..+..... ..|+++|+.-=
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred ccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 458999999643 45666665544 24778876543
No 483
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.45 E-value=0.059 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.5
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
|.+.|.+|+|||||+..+.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999887754
No 484
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.29 Score=48.47 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=61.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhcCCC--CCC--cHHHHH---HHhc--cCCceEEecCCCC--
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLKDEN--AIP--GIDLNF---RRLS--RMKVLIFFYDVTC-- 205 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~~~~--~~~--~~~~l~---~~l~--~~~~LlVlDdv~~-- 205 (439)
.|-|..||+||.|||-.|+.++.+-.- -..+....+ ... .+..+. .+-+ .+..||.+|..+-
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGl-------DYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGL-------DYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCC-------ceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 688999999999999999998876431 011111111 111 333333 3322 4567777898741
Q ss_pred ---------HHH---HHHHhcCCCCCCCCcEE-EEEeCchHH--HHhcCCCeEEEcCCCCHHHHHHHHHHh
Q 037205 206 ---------FSQ---LESLMGSLDWLTPVSRI-ILTTRNKQV--LRNWGVSKIYEMEALEYHHALELFSRH 261 (439)
Q Consensus 206 ---------~~~---~~~l~~~~~~~~~gs~I-iiTTR~~~v--~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 261 (439)
..+ +.+|+-.....+..-.+ +.|.|..+. +.....+.+++.+....+|-..|+..+
T Consensus 457 ceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lY 527 (630)
T KOG0742|consen 457 CERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLY 527 (630)
T ss_pred HHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHH
Confidence 222 44444332222222222 334453322 222235566776666777776666544
No 485
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.37 Score=43.33 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+-.++||.|..|.||||+.+.++.-+
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 356799999999999999999887554
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.40 E-value=0.063 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|.|..|.|||||++.++.-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999986644
No 487
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.40 E-value=0.058 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+|+|.|..|+|||||++.+...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999877554
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.39 E-value=0.11 Score=48.05 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.|.++|..+-..-.++.|.|.+|.||||||.++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 344444433344678999999999999999986643
No 489
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.38 E-value=0.068 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|++.|.+|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999987644
No 490
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.38 E-value=0.058 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 491
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.37 E-value=3.4 Score=39.97 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=83.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc----------C--CCCCC--cHHHHHHHhc------cCCc
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK----------D--ENAIP--GIDLNFRRLS------RMKV 196 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~----------~--~~~~~--~~~~l~~~l~------~~~~ 196 (439)
..+..++|..|+||+++|..+.+.+- ... -..+.. + ...+. .+..+.+.+. +.+-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~----c~~-~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFN----NLQ-ITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHc----CcC-CCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCce
Confidence 56778999999999999999876641 000 000000 0 01111 2222333331 3667
Q ss_pred eEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCc-hHHHHh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcch
Q 037205 197 LIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGY 272 (439)
Q Consensus 197 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 272 (439)
++|+|+++... ...+|+..+....+++.+|++|.+ ..+.+. ......+++.+++.++..+.+.... .+
T Consensus 93 vvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~-----~~--- 164 (299)
T PRK07132 93 ILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN-----KE--- 164 (299)
T ss_pred EEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC-----CC---
Confidence 88889886543 355666666555567777765544 444443 2346789999999999987776531 11
Q ss_pred HHHHHHHHHHhCCCcHHHHHH
Q 037205 273 EKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 273 ~~~~~~i~~~~~GlPLal~~~ 293 (439)
.+.+..++..++|.--|+..+
T Consensus 165 ~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 165 KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred hhHHHHHHHHcCCHHHHHHHH
Confidence 234566666777633555553
No 492
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.37 E-value=0.06 Score=57.28 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=36.3
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....++|.+..++.+...+... +.+.++|++|+||||+|+.+.+.+
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l 61 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELL 61 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899998888888777632 256699999999999999887665
No 493
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.35 E-value=0.084 Score=48.38 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.|+|+|-||+||||+|..+..++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999998755443
No 494
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.35 E-value=0.069 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|+|.|.+|.||||+|+.+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999998876654
No 495
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.34 E-value=0.11 Score=50.53 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.1
Q ss_pred HHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 125 EIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 125 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|..+|. .+-..-+++-|+|++|+||||||.+++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444554 3444567999999999999999998776654
No 496
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.30 E-value=0.15 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-..++|+|..|.|||||++.+...
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999987643
No 497
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.30 E-value=0.059 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.9
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+++|.+|+|||||+..+...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887654
No 498
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.30 E-value=0.1 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=27.5
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|.++|..+-..-.++.|+|.+|+|||+||.++...
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 3444555544455678999999999999999987544
No 499
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.27 E-value=0.069 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=21.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-.+++|.|..|.|||||++.++..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999986643
No 500
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=1.6 Score=43.97 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=40.2
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCCCCCcHHHHHHHh-ccCCceEEecCCCC
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDENAIPGIDLNFRRL-SRMKVLIFFYDVTC 205 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 205 (439)
..++-+.+.|++|.|||-||++++-.... |. ....+.+...+.. ...+..+...- ...+.++++|+++.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~--eK~vralf~vAr~~qPsvifidEids 256 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGES--EKLVRALFKVARSLQPSVIFIDEIDS 256 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChH--HHHHHHHHHHHHhcCCeEEEechhHH
Confidence 34677889999999999999999988765 22 2222222221111 00122222222 23678888999853
Done!