Query 037205
Match_columns 439
No_of_seqs 352 out of 2907
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.6E-42 1.6E-46 358.5 17.7 269 117-393 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-38 9.6E-43 358.7 23.0 271 111-392 121-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-35 4.5E-40 312.7 23.1 294 111-416 121-496 (591)
4 1vt4_I APAF-1 related killer D 100.0 1.5E-35 5.2E-40 317.1 16.1 271 114-412 128-459 (1221)
5 3jrn_A AT1G72930 protein; TIR 99.9 1.2E-27 4.1E-32 208.9 8.0 100 4-107 76-175 (176)
6 3ozi_A L6TR; plant TIR domain, 99.9 7.4E-27 2.5E-31 207.0 6.4 99 4-104 103-202 (204)
7 2qen_A Walker-type ATPase; unk 99.7 2.2E-15 7.4E-20 147.2 18.3 261 111-386 9-349 (350)
8 2fna_A Conserved hypothetical 99.7 7E-16 2.4E-20 151.0 13.8 260 111-385 10-356 (357)
9 1w5s_A Origin recognition comp 99.6 5.7E-15 1.9E-19 147.8 17.0 255 110-370 18-371 (412)
10 2qby_B CDC6 homolog 3, cell di 99.5 2.5E-12 8.6E-17 127.3 25.2 242 113-370 19-339 (384)
11 2qby_A CDC6 homolog 1, cell di 99.5 9.6E-13 3.3E-17 130.0 19.6 228 111-345 17-298 (386)
12 2v1u_A Cell division control p 99.5 2.4E-12 8.3E-17 127.2 19.0 227 111-348 16-305 (387)
13 1fnn_A CDC6P, cell division co 99.4 1.5E-11 5.3E-16 121.7 19.3 275 111-392 14-387 (389)
14 1njg_A DNA polymerase III subu 99.3 1.9E-11 6.6E-16 112.1 15.7 182 113-297 22-231 (250)
15 2chg_A Replication factor C sm 99.2 6E-11 2E-15 107.4 11.6 173 113-295 16-205 (226)
16 1sxj_B Activator 1 37 kDa subu 99.1 4.9E-10 1.7E-14 107.9 12.8 175 114-296 21-212 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 1.1E-09 3.7E-14 105.6 10.7 173 113-295 24-213 (327)
18 3h16_A TIR protein; bacteria T 99.0 1E-10 3.5E-15 100.7 2.1 50 4-53 87-136 (154)
19 1hqc_A RUVB; extended AAA-ATPa 98.9 2E-08 7E-13 96.7 16.8 246 112-381 10-308 (324)
20 3d8b_A Fidgetin-like protein 1 98.8 8.1E-08 2.8E-12 94.1 15.9 198 87-296 63-297 (357)
21 2chq_A Replication factor C sm 98.8 6.5E-08 2.2E-12 92.7 14.8 173 114-293 17-203 (319)
22 1jr3_A DNA polymerase III subu 98.8 1.6E-07 5.3E-12 92.2 17.2 179 113-294 15-221 (373)
23 3h4m_A Proteasome-activating n 98.7 3.8E-08 1.3E-12 93.1 11.1 174 111-293 14-230 (285)
24 3bos_A Putative DNA replicatio 98.7 1.5E-08 5.1E-13 92.9 6.5 170 111-295 25-218 (242)
25 1jbk_A CLPB protein; beta barr 98.7 1.3E-08 4.4E-13 89.5 5.3 48 113-162 21-68 (195)
26 3pfi_A Holliday junction ATP-d 98.7 2.4E-07 8.3E-12 89.8 14.4 248 113-383 28-326 (338)
27 1d2n_A N-ethylmaleimide-sensit 98.7 3.4E-07 1.2E-11 86.0 14.7 193 114-315 33-264 (272)
28 1sxj_A Activator 1 95 kDa subu 98.7 2.7E-07 9.4E-12 94.9 14.8 173 113-293 38-252 (516)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.6 3.1E-07 1.1E-11 85.4 13.8 177 111-295 3-223 (262)
30 1sxj_D Activator 1 41 kDa subu 98.6 7.2E-07 2.5E-11 86.7 16.9 174 113-293 36-234 (353)
31 3eie_A Vacuolar protein sortin 98.6 4.7E-07 1.6E-11 87.3 15.2 179 111-295 15-229 (322)
32 2z4s_A Chromosomal replication 98.6 2.9E-07 9.8E-12 92.8 13.0 175 111-293 102-305 (440)
33 3b9p_A CG5977-PA, isoform A; A 98.6 1.1E-06 3.6E-11 83.6 14.8 178 111-295 18-234 (297)
34 1l8q_A Chromosomal replication 98.5 7.8E-07 2.7E-11 85.7 13.5 170 111-290 8-204 (324)
35 3te6_A Regulatory protein SIR3 98.5 4.5E-07 1.5E-11 86.9 10.9 145 115-262 21-211 (318)
36 2zan_A Vacuolar protein sortin 98.5 7.7E-07 2.6E-11 89.8 12.8 181 111-295 131-346 (444)
37 3vfd_A Spastin; ATPase, microt 98.5 1.5E-06 5.3E-11 86.0 14.8 180 112-295 113-327 (389)
38 2qp9_X Vacuolar protein sortin 98.5 7.9E-07 2.7E-11 87.0 12.4 177 112-295 49-262 (355)
39 1xwi_A SKD1 protein; VPS4B, AA 98.5 1.9E-06 6.5E-11 83.1 14.4 178 112-295 10-224 (322)
40 3cf0_A Transitional endoplasmi 98.4 1.3E-06 4.6E-11 83.3 12.5 173 112-289 13-223 (301)
41 3pvs_A Replication-associated 98.4 1.2E-06 4.1E-11 88.3 12.4 165 113-291 25-212 (447)
42 3uk6_A RUVB-like 2; hexameric 98.4 1.9E-06 6.6E-11 84.3 13.5 175 113-293 43-302 (368)
43 1sxj_E Activator 1 40 kDa subu 98.4 2.3E-06 7.9E-11 83.3 12.4 177 114-294 14-237 (354)
44 3syl_A Protein CBBX; photosynt 98.4 2.1E-06 7.1E-11 82.0 11.8 144 115-264 32-219 (309)
45 3u61_B DNA polymerase accessor 98.3 9.6E-07 3.3E-11 85.0 8.7 166 113-290 25-212 (324)
46 4b4t_J 26S protease regulatory 98.2 2.9E-05 1E-09 76.3 16.1 172 113-289 147-356 (405)
47 1sxj_C Activator 1 40 kDa subu 98.2 1.5E-05 5.2E-10 77.2 13.5 167 114-290 25-208 (340)
48 4b4t_H 26S protease regulatory 98.2 3.4E-05 1.2E-09 77.0 15.7 170 114-288 209-416 (467)
49 1in4_A RUVB, holliday junction 98.2 0.00011 3.8E-09 71.0 18.6 246 114-382 25-322 (334)
50 3hu3_A Transitional endoplasmi 98.1 2.8E-06 9.5E-11 86.5 6.9 176 114-293 204-414 (489)
51 4b4t_L 26S protease subunit RP 98.1 3E-05 1E-09 77.3 13.2 173 111-289 178-389 (437)
52 4b4t_M 26S protease regulatory 98.1 1.1E-05 3.9E-10 80.3 9.8 171 112-288 179-388 (434)
53 4b4t_K 26S protease regulatory 98.1 2.6E-05 8.9E-10 77.6 12.4 168 113-288 171-380 (428)
54 2r62_A Cell division protease 98.0 1.1E-06 3.7E-11 82.2 1.4 151 111-262 8-196 (268)
55 4b4t_I 26S protease regulatory 98.0 4.9E-05 1.7E-09 75.1 12.2 171 112-288 180-389 (437)
56 1a5t_A Delta prime, HOLB; zinc 98.0 0.00018 6.1E-09 69.5 16.0 165 121-293 9-204 (334)
57 1lv7_A FTSH; alpha/beta domain 98.0 3.1E-05 1.1E-09 71.8 10.2 172 111-292 9-223 (257)
58 1qvr_A CLPB protein; coiled co 98.0 2.8E-06 9.7E-11 92.6 3.3 142 113-261 169-344 (854)
59 3pxg_A Negative regulator of g 97.9 6E-05 2.1E-09 76.4 12.6 138 114-262 180-338 (468)
60 2ce7_A Cell division protein F 97.9 9.3E-05 3.2E-09 74.8 12.4 168 113-287 15-221 (476)
61 3ec2_A DNA replication protein 97.9 5.2E-06 1.8E-10 72.6 2.6 43 120-162 20-63 (180)
62 1ofh_A ATP-dependent HSL prote 97.8 5.7E-05 1.9E-09 71.7 10.0 49 114-162 15-75 (310)
63 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00018 6.2E-09 77.4 14.0 147 113-262 185-362 (758)
64 3pxi_A Negative regulator of g 97.8 0.00014 4.9E-09 78.2 13.0 139 113-262 179-338 (758)
65 2p65_A Hypothetical protein PF 97.8 1.6E-05 5.4E-10 69.2 4.5 47 113-161 21-67 (187)
66 2bjv_A PSP operon transcriptio 97.8 2.8E-05 9.6E-10 72.4 6.0 49 114-162 6-54 (265)
67 3ub2_A TOLL/interleukin-1 rece 97.7 1.4E-05 4.9E-10 67.5 3.5 64 4-70 78-145 (146)
68 1ojl_A Transcriptional regulat 97.7 3.8E-05 1.3E-09 73.3 6.7 48 114-161 2-49 (304)
69 4fcw_A Chaperone protein CLPB; 97.7 5.8E-05 2E-09 71.8 7.9 48 114-161 17-71 (311)
70 3t15_A Ribulose bisphosphate c 97.6 6.2E-05 2.1E-09 71.4 6.5 28 136-163 35-62 (293)
71 3cf2_A TER ATPase, transitiona 97.6 0.00011 3.8E-09 78.6 9.0 170 113-289 203-409 (806)
72 2w58_A DNAI, primosome compone 97.6 6.5E-05 2.2E-09 66.8 5.8 91 113-205 24-126 (202)
73 2gno_A DNA polymerase III, gam 97.6 0.00014 4.7E-09 69.4 8.2 140 118-262 1-152 (305)
74 1ixz_A ATP-dependent metallopr 97.5 6.2E-05 2.1E-09 69.5 5.1 171 112-287 14-221 (254)
75 3n70_A Transport activator; si 97.5 5.9E-05 2E-09 63.5 3.4 47 115-161 2-48 (145)
76 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00048 1.6E-08 70.0 10.4 168 111-287 28-236 (499)
77 1iy2_A ATP-dependent metallopr 97.4 9.3E-05 3.2E-09 69.4 4.9 172 111-287 37-245 (278)
78 3m6a_A ATP-dependent protease 97.4 0.0036 1.2E-07 64.5 16.8 143 115-262 82-266 (543)
79 2x8a_A Nuclear valosin-contain 97.4 0.0013 4.5E-08 61.5 11.8 142 114-262 10-191 (274)
80 3pxi_A Negative regulator of g 97.2 0.0011 3.9E-08 71.1 11.1 145 114-262 491-675 (758)
81 1ypw_A Transitional endoplasmi 97.2 0.0011 3.8E-08 71.6 9.8 145 113-262 203-385 (806)
82 3co5_A Putative two-component 97.1 7.8E-05 2.7E-09 62.6 0.1 48 114-161 4-51 (143)
83 2qgz_A Helicase loader, putati 96.9 0.00068 2.3E-08 64.6 4.9 89 114-204 124-224 (308)
84 1r6b_X CLPA protein; AAA+, N-t 96.8 0.00058 2E-08 73.4 3.5 48 114-161 458-512 (758)
85 1qvr_A CLPB protein; coiled co 96.6 0.0042 1.5E-07 67.6 8.8 48 114-161 558-612 (854)
86 2c9o_A RUVB-like 1; hexameric 96.6 0.0016 5.5E-08 65.6 4.7 51 112-162 35-88 (456)
87 1j8m_F SRP54, signal recogniti 96.5 0.0038 1.3E-07 59.0 6.7 26 137-162 98-123 (297)
88 3cf2_A TER ATPase, transitiona 96.5 0.0017 5.7E-08 69.5 4.6 150 111-262 474-661 (806)
89 3c8u_A Fructokinase; YP_612366 96.4 0.0032 1.1E-07 56.1 5.1 28 135-162 20-47 (208)
90 3kb2_A SPBC2 prophage-derived 96.4 0.002 6.9E-08 55.0 3.5 25 138-162 2-26 (173)
91 1qhx_A CPT, protein (chloramph 96.3 0.0018 6.1E-08 55.9 3.1 25 138-162 4-28 (178)
92 3hws_A ATP-dependent CLP prote 96.3 0.0024 8.2E-08 62.2 4.4 47 116-162 17-76 (363)
93 1rz3_A Hypothetical protein rb 96.3 0.0032 1.1E-07 55.8 4.8 43 119-161 3-46 (201)
94 3lw7_A Adenylate kinase relate 96.3 0.002 6.9E-08 55.0 3.1 23 138-161 2-24 (179)
95 2r44_A Uncharacterized protein 96.2 0.0017 5.9E-08 62.2 2.6 44 114-161 27-70 (331)
96 3trf_A Shikimate kinase, SK; a 96.2 0.0028 9.6E-08 55.0 3.5 26 137-162 5-30 (185)
97 3sr0_A Adenylate kinase; phosp 96.2 0.013 4.5E-07 52.1 8.0 73 139-212 2-93 (206)
98 3vaa_A Shikimate kinase, SK; s 96.2 0.0029 9.8E-08 55.9 3.5 26 137-162 25-50 (199)
99 1odf_A YGR205W, hypothetical 3 96.1 0.0056 1.9E-07 57.7 5.6 29 134-162 28-56 (290)
100 1zu4_A FTSY; GTPase, signal re 96.1 0.009 3.1E-07 57.1 7.1 26 136-161 104-129 (320)
101 2kjq_A DNAA-related protein; s 96.1 0.0039 1.3E-07 52.6 4.0 26 136-161 35-60 (149)
102 1ly1_A Polynucleotide kinase; 96.1 0.0033 1.1E-07 54.1 3.5 22 138-159 3-24 (181)
103 1nks_A Adenylate kinase; therm 96.1 0.0036 1.2E-07 54.4 3.7 25 138-162 2-26 (194)
104 1g8p_A Magnesium-chelatase 38 96.0 0.0027 9.2E-08 61.1 2.9 48 112-161 22-69 (350)
105 1kag_A SKI, shikimate kinase I 96.0 0.0028 9.7E-08 54.3 2.7 25 138-162 5-29 (173)
106 3e70_C DPA, signal recognition 96.0 0.029 9.8E-07 53.7 9.9 27 136-162 128-154 (328)
107 1kht_A Adenylate kinase; phosp 96.0 0.004 1.4E-07 54.1 3.6 25 138-162 4-28 (192)
108 2rhm_A Putative kinase; P-loop 96.0 0.0048 1.6E-07 53.8 4.1 26 137-162 5-30 (193)
109 3tlx_A Adenylate kinase 2; str 96.0 0.005 1.7E-07 56.4 4.2 41 122-162 14-54 (243)
110 3iij_A Coilin-interacting nucl 95.9 0.0035 1.2E-07 54.2 2.9 26 137-162 11-36 (180)
111 3t61_A Gluconokinase; PSI-biol 95.9 0.0033 1.1E-07 55.6 2.8 26 137-162 18-43 (202)
112 1zp6_A Hypothetical protein AT 95.9 0.0038 1.3E-07 54.4 3.2 24 137-160 9-32 (191)
113 1zuh_A Shikimate kinase; alpha 95.9 0.0046 1.6E-07 52.8 3.5 28 136-163 6-33 (168)
114 1knq_A Gluconate kinase; ALFA/ 95.9 0.0062 2.1E-07 52.3 4.3 25 137-161 8-32 (175)
115 3uie_A Adenylyl-sulfate kinase 95.8 0.0058 2E-07 53.9 4.0 27 136-162 24-50 (200)
116 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0071 2.4E-07 58.3 4.9 44 120-163 5-50 (359)
117 1tev_A UMP-CMP kinase; ploop, 95.8 0.0054 1.9E-07 53.4 3.8 26 137-162 3-28 (196)
118 2iyv_A Shikimate kinase, SK; t 95.8 0.0038 1.3E-07 54.2 2.7 25 138-162 3-27 (184)
119 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.004 1.4E-07 63.2 3.2 44 114-161 22-65 (500)
120 1vma_A Cell division protein F 95.8 0.018 6.1E-07 54.6 7.5 41 122-162 83-129 (306)
121 2ze6_A Isopentenyl transferase 95.8 0.0055 1.9E-07 56.5 3.8 24 138-161 2-25 (253)
122 1um8_A ATP-dependent CLP prote 95.8 0.0058 2E-07 59.7 4.1 26 137-162 72-97 (376)
123 3jvv_A Twitching mobility prot 95.8 0.003 1E-07 61.4 1.9 96 138-236 124-235 (356)
124 1ukz_A Uridylate kinase; trans 95.8 0.0062 2.1E-07 53.7 3.9 27 136-162 14-40 (203)
125 2jaq_A Deoxyguanosine kinase; 95.8 0.0055 1.9E-07 53.9 3.6 24 139-162 2-25 (205)
126 3cm0_A Adenylate kinase; ATP-b 95.8 0.0061 2.1E-07 52.9 3.8 26 137-162 4-29 (186)
127 2c95_A Adenylate kinase 1; tra 95.8 0.0056 1.9E-07 53.5 3.5 26 137-162 9-34 (196)
128 4eun_A Thermoresistant glucoki 95.8 0.0055 1.9E-07 54.1 3.5 26 136-161 28-53 (200)
129 1via_A Shikimate kinase; struc 95.7 0.0054 1.9E-07 52.8 3.3 25 139-163 6-30 (175)
130 1kgd_A CASK, peripheral plasma 95.7 0.0056 1.9E-07 53.1 3.4 24 138-161 6-29 (180)
131 2bwj_A Adenylate kinase 5; pho 95.7 0.0056 1.9E-07 53.6 3.3 26 137-162 12-37 (199)
132 1e6c_A Shikimate kinase; phosp 95.7 0.005 1.7E-07 52.7 2.9 25 138-162 3-27 (173)
133 1y63_A LMAJ004144AAA protein; 95.7 0.006 2E-07 53.1 3.4 24 137-160 10-33 (184)
134 2plr_A DTMP kinase, probable t 95.7 0.0069 2.4E-07 53.6 3.8 25 138-162 5-29 (213)
135 1qf9_A UMP/CMP kinase, protein 95.7 0.0068 2.3E-07 52.7 3.6 26 137-162 6-31 (194)
136 2yvu_A Probable adenylyl-sulfa 95.6 0.0077 2.6E-07 52.4 3.9 27 136-162 12-38 (186)
137 1uj2_A Uridine-cytidine kinase 95.6 0.0069 2.3E-07 55.7 3.7 27 135-161 20-46 (252)
138 2xxa_A Signal recognition part 95.6 0.028 9.5E-07 56.0 8.3 27 136-162 99-125 (433)
139 2cdn_A Adenylate kinase; phosp 95.6 0.0082 2.8E-07 52.9 4.0 26 137-162 20-45 (201)
140 2pt5_A Shikimate kinase, SK; a 95.6 0.0073 2.5E-07 51.4 3.6 24 139-162 2-25 (168)
141 2vli_A Antibiotic resistance p 95.6 0.0048 1.6E-07 53.3 2.4 26 137-162 5-30 (183)
142 1cke_A CK, MSSA, protein (cyti 95.6 0.007 2.4E-07 54.3 3.6 24 138-161 6-29 (227)
143 2yhs_A FTSY, cell division pro 95.6 0.023 7.8E-07 57.2 7.5 27 136-162 292-318 (503)
144 2qor_A Guanylate kinase; phosp 95.6 0.0051 1.7E-07 54.5 2.5 25 137-161 12-36 (204)
145 1aky_A Adenylate kinase; ATP:A 95.6 0.0074 2.5E-07 54.1 3.6 26 137-162 4-29 (220)
146 2pbr_A DTMP kinase, thymidylat 95.6 0.0075 2.6E-07 52.5 3.6 23 139-161 2-24 (195)
147 1uf9_A TT1252 protein; P-loop, 95.6 0.0074 2.5E-07 53.0 3.5 26 135-160 6-31 (203)
148 3umf_A Adenylate kinase; rossm 95.5 0.0089 3E-07 53.7 4.0 28 135-162 27-54 (217)
149 2bdt_A BH3686; alpha-beta prot 95.5 0.0076 2.6E-07 52.5 3.5 23 138-160 3-25 (189)
150 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0092 3.1E-07 55.2 4.2 26 137-162 4-29 (260)
151 1gvn_B Zeta; postsegregational 95.5 0.011 3.9E-07 55.5 4.9 26 136-161 32-57 (287)
152 2bbw_A Adenylate kinase 4, AK4 95.5 0.0077 2.6E-07 55.0 3.6 25 137-161 27-51 (246)
153 1xjc_A MOBB protein homolog; s 95.5 0.0094 3.2E-07 51.3 3.8 27 136-162 3-29 (169)
154 3tr0_A Guanylate kinase, GMP k 95.4 0.0078 2.7E-07 53.0 3.3 23 138-160 8-30 (205)
155 2wwf_A Thymidilate kinase, put 95.4 0.0092 3.2E-07 52.8 3.8 26 137-162 10-35 (212)
156 2if2_A Dephospho-COA kinase; a 95.4 0.0075 2.6E-07 53.2 3.1 21 139-159 3-23 (204)
157 1g5t_A COB(I)alamin adenosyltr 95.4 0.0095 3.2E-07 52.5 3.7 93 138-233 29-164 (196)
158 1tue_A Replication protein E1; 95.4 0.011 3.7E-07 52.4 4.1 38 123-161 45-82 (212)
159 3tau_A Guanylate kinase, GMP k 95.4 0.0078 2.7E-07 53.6 3.2 26 136-161 7-32 (208)
160 2j41_A Guanylate kinase; GMP, 95.4 0.0081 2.8E-07 53.0 3.2 25 137-161 6-30 (207)
161 3asz_A Uridine kinase; cytidin 95.4 0.01 3.5E-07 52.7 3.9 27 136-162 5-31 (211)
162 3fb4_A Adenylate kinase; psych 95.4 0.0093 3.2E-07 53.1 3.6 24 139-162 2-25 (216)
163 1jjv_A Dephospho-COA kinase; P 95.4 0.0087 3E-07 52.9 3.4 22 138-159 3-24 (206)
164 1nn5_A Similar to deoxythymidy 95.4 0.01 3.4E-07 52.7 3.7 26 137-162 9-34 (215)
165 1ye8_A Protein THEP1, hypothet 95.3 0.01 3.4E-07 51.6 3.6 24 139-162 2-25 (178)
166 2qt1_A Nicotinamide riboside k 95.3 0.011 3.7E-07 52.4 3.8 26 136-161 20-45 (207)
167 4gp7_A Metallophosphoesterase; 95.3 0.0083 2.8E-07 51.6 2.9 22 137-158 9-30 (171)
168 2z0h_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 51.8 3.6 24 139-162 2-25 (197)
169 2grj_A Dephospho-COA kinase; T 95.3 0.013 4.3E-07 51.7 4.1 26 136-161 11-36 (192)
170 3a00_A Guanylate kinase, GMP k 95.3 0.0078 2.7E-07 52.5 2.7 24 138-161 2-25 (186)
171 1ex7_A Guanylate kinase; subst 95.3 0.0085 2.9E-07 52.5 2.8 24 138-161 2-25 (186)
172 3dl0_A Adenylate kinase; phosp 95.2 0.0099 3.4E-07 53.0 3.2 24 139-162 2-25 (216)
173 3tqc_A Pantothenate kinase; bi 95.2 0.015 5.3E-07 55.4 4.7 45 117-161 70-116 (321)
174 3dm5_A SRP54, signal recogniti 95.2 0.041 1.4E-06 54.7 7.9 27 136-162 99-125 (443)
175 1zd8_A GTP:AMP phosphotransfer 95.2 0.0094 3.2E-07 53.7 2.9 26 137-162 7-32 (227)
176 2pez_A Bifunctional 3'-phospho 95.2 0.014 4.8E-07 50.3 3.9 25 137-161 5-29 (179)
177 1zak_A Adenylate kinase; ATP:A 95.1 0.01 3.5E-07 53.2 3.0 26 137-162 5-30 (222)
178 3kl4_A SRP54, signal recogniti 95.1 0.063 2.2E-06 53.3 8.9 28 136-163 96-123 (433)
179 1jr3_D DNA polymerase III, del 95.1 0.15 5.2E-06 48.7 11.5 150 136-292 17-183 (343)
180 1gtv_A TMK, thymidylate kinase 95.1 0.0073 2.5E-07 53.6 1.9 23 139-161 2-24 (214)
181 1m7g_A Adenylylsulfate kinase; 95.0 0.015 5.2E-07 51.7 3.9 26 137-162 25-50 (211)
182 3be4_A Adenylate kinase; malar 95.0 0.012 4E-07 52.7 3.1 25 138-162 6-30 (217)
183 2v54_A DTMP kinase, thymidylat 95.0 0.011 3.9E-07 51.9 2.9 25 137-161 4-28 (204)
184 4e22_A Cytidylate kinase; P-lo 95.0 0.013 4.4E-07 53.9 3.4 26 137-162 27-52 (252)
185 1g41_A Heat shock protein HSLU 95.0 0.018 6.2E-07 57.3 4.6 49 114-162 15-75 (444)
186 3gmt_A Adenylate kinase; ssgci 95.0 0.084 2.9E-06 47.7 8.6 77 137-213 8-105 (230)
187 1lvg_A Guanylate kinase, GMP k 95.0 0.012 4E-07 52.0 2.9 23 138-160 5-27 (198)
188 2p5t_B PEZT; postsegregational 95.0 0.013 4.5E-07 53.8 3.3 27 136-162 31-57 (253)
189 2hf9_A Probable hydrogenase ni 94.9 0.018 6.2E-07 51.4 4.2 37 123-161 26-62 (226)
190 2cvh_A DNA repair and recombin 94.9 0.017 5.9E-07 51.3 3.9 24 136-159 19-42 (220)
191 3ake_A Cytidylate kinase; CMP 94.9 0.016 5.3E-07 51.1 3.6 24 139-162 4-27 (208)
192 3ney_A 55 kDa erythrocyte memb 94.9 0.015 5.2E-07 51.4 3.4 26 136-161 18-43 (197)
193 4a74_A DNA repair and recombin 94.9 0.015 5.2E-07 52.0 3.5 25 136-160 24-48 (231)
194 3p32_A Probable GTPase RV1496/ 94.8 0.026 8.7E-07 54.7 5.2 39 123-161 65-103 (355)
195 2xb4_A Adenylate kinase; ATP-b 94.8 0.016 5.6E-07 52.0 3.6 24 139-162 2-25 (223)
196 1e4v_A Adenylate kinase; trans 94.8 0.016 5.5E-07 51.6 3.4 24 139-162 2-25 (214)
197 2jeo_A Uridine-cytidine kinase 94.8 0.021 7E-07 52.2 4.0 26 136-161 24-49 (245)
198 3aez_A Pantothenate kinase; tr 94.7 0.021 7.3E-07 54.2 4.2 27 135-161 88-114 (312)
199 1vht_A Dephospho-COA kinase; s 94.7 0.02 6.9E-07 51.0 3.8 23 137-159 4-26 (218)
200 3nwj_A ATSK2; P loop, shikimat 94.7 0.015 5.2E-07 53.4 2.9 26 138-163 49-74 (250)
201 2wsm_A Hydrogenase expression/ 94.7 0.016 5.5E-07 51.6 3.1 39 120-160 15-53 (221)
202 2f6r_A COA synthase, bifunctio 94.7 0.018 6.3E-07 53.8 3.6 23 136-158 74-96 (281)
203 1ak2_A Adenylate kinase isoenz 94.7 0.019 6.6E-07 51.9 3.6 27 137-163 16-42 (233)
204 1n0w_A DNA repair protein RAD5 94.6 0.017 5.6E-07 52.3 3.1 37 124-160 11-47 (243)
205 1a7j_A Phosphoribulokinase; tr 94.6 0.013 4.6E-07 55.1 2.5 27 136-162 4-30 (290)
206 1znw_A Guanylate kinase, GMP k 94.6 0.018 6E-07 51.1 3.2 24 137-160 20-43 (207)
207 3d3q_A TRNA delta(2)-isopenten 94.6 0.02 6.7E-07 55.0 3.6 25 138-162 8-32 (340)
208 3fwy_A Light-independent proto 94.6 0.024 8.2E-07 53.9 4.2 29 135-163 46-74 (314)
209 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.022 7.4E-07 54.2 3.7 63 137-205 123-193 (331)
210 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.024 8.4E-07 50.6 3.9 25 137-161 23-47 (235)
211 3r20_A Cytidylate kinase; stru 94.5 0.022 7.5E-07 51.7 3.6 26 137-162 9-34 (233)
212 1rj9_A FTSY, signal recognitio 94.5 0.025 8.5E-07 53.6 4.0 26 136-161 101-126 (304)
213 2i3b_A HCR-ntpase, human cance 94.5 0.021 7.1E-07 50.1 3.2 23 139-161 3-25 (189)
214 1z6g_A Guanylate kinase; struc 94.4 0.017 5.8E-07 51.8 2.7 23 137-159 23-45 (218)
215 2ehv_A Hypothetical protein PH 94.4 0.02 6.9E-07 51.9 3.2 23 137-159 30-52 (251)
216 1np6_A Molybdopterin-guanine d 94.4 0.028 9.6E-07 48.6 3.8 26 137-162 6-31 (174)
217 3crm_A TRNA delta(2)-isopenten 94.4 0.022 7.6E-07 54.2 3.4 25 138-162 6-30 (323)
218 3k1j_A LON protease, ATP-depen 94.4 0.023 7.8E-07 59.2 3.8 44 114-161 41-84 (604)
219 1htw_A HI0065; nucleotide-bind 94.3 0.026 9E-07 47.9 3.4 25 136-160 32-56 (158)
220 1ltq_A Polynucleotide kinase; 94.3 0.026 8.8E-07 53.0 3.6 24 138-161 3-26 (301)
221 1s96_A Guanylate kinase, GMP k 94.3 0.024 8.2E-07 51.0 3.2 26 137-162 16-41 (219)
222 2f1r_A Molybdopterin-guanine d 94.2 0.021 7.2E-07 49.2 2.7 25 138-162 3-27 (171)
223 1u0j_A DNA replication protein 94.2 0.044 1.5E-06 50.6 4.9 36 125-160 92-127 (267)
224 3lnc_A Guanylate kinase, GMP k 94.2 0.017 5.7E-07 52.2 2.0 22 137-158 27-48 (231)
225 3zvl_A Bifunctional polynucleo 94.2 0.026 8.9E-07 55.9 3.5 26 136-161 257-282 (416)
226 3b9q_A Chloroplast SRP recepto 94.1 0.041 1.4E-06 52.0 4.7 26 136-161 99-124 (302)
227 2px0_A Flagellar biosynthesis 94.1 0.027 9.4E-07 53.1 3.3 27 136-162 104-130 (296)
228 1q3t_A Cytidylate kinase; nucl 94.1 0.033 1.1E-06 50.4 3.8 27 136-162 15-41 (236)
229 3a8t_A Adenylate isopentenyltr 94.0 0.025 8.7E-07 54.1 3.1 26 137-162 40-65 (339)
230 3bh0_A DNAB-like replicative h 94.0 0.056 1.9E-06 51.4 5.4 38 123-161 55-92 (315)
231 1svm_A Large T antigen; AAA+ f 94.0 0.038 1.3E-06 54.0 4.2 27 134-160 166-192 (377)
232 1sq5_A Pantothenate kinase; P- 94.0 0.035 1.2E-06 52.6 3.9 27 135-161 78-104 (308)
233 3exa_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 53.0 3.3 25 137-161 3-27 (322)
234 2dr3_A UPF0273 protein PH0284; 93.9 0.024 8.4E-07 51.2 2.6 25 137-161 23-47 (247)
235 3hr8_A Protein RECA; alpha and 93.9 0.087 3E-06 50.9 6.5 41 122-162 45-86 (356)
236 2zr9_A Protein RECA, recombina 93.9 0.078 2.7E-06 51.1 6.2 41 122-162 45-86 (349)
237 3foz_A TRNA delta(2)-isopenten 93.8 0.038 1.3E-06 52.2 3.8 26 136-161 9-34 (316)
238 4a1f_A DNAB helicase, replicat 93.8 0.049 1.7E-06 52.3 4.5 45 117-162 27-71 (338)
239 4eaq_A DTMP kinase, thymidylat 93.8 0.04 1.4E-06 49.8 3.7 27 136-162 25-51 (229)
240 2r6a_A DNAB helicase, replicat 93.8 0.069 2.4E-06 53.5 5.8 38 123-161 190-227 (454)
241 2qmh_A HPR kinase/phosphorylas 93.7 0.036 1.2E-06 48.8 3.2 24 138-161 35-58 (205)
242 3b85_A Phosphate starvation-in 93.7 0.031 1.1E-06 49.8 2.8 23 138-160 23-45 (208)
243 2onk_A Molybdate/tungstate ABC 93.7 0.037 1.3E-06 50.5 3.3 24 135-159 23-46 (240)
244 2q6t_A DNAB replication FORK h 93.6 0.072 2.5E-06 53.2 5.7 43 118-161 182-224 (444)
245 3tif_A Uncharacterized ABC tra 93.6 0.033 1.1E-06 50.6 2.9 23 137-159 31-53 (235)
246 2og2_A Putative signal recogni 93.6 0.057 1.9E-06 52.3 4.6 26 136-161 156-181 (359)
247 2pcj_A ABC transporter, lipopr 93.6 0.032 1.1E-06 50.3 2.7 23 137-159 30-52 (224)
248 2v3c_C SRP54, signal recogniti 93.6 0.05 1.7E-06 54.1 4.3 27 136-162 98-124 (432)
249 1ypw_A Transitional endoplasmi 93.5 0.039 1.3E-06 59.5 3.7 150 111-262 474-661 (806)
250 2dyk_A GTP-binding protein; GT 93.5 0.047 1.6E-06 45.4 3.5 24 138-161 2-25 (161)
251 2orw_A Thymidine kinase; TMTK, 93.5 0.048 1.6E-06 47.5 3.6 25 138-162 4-28 (184)
252 2js7_A Myeloid differentiation 93.5 0.016 5.4E-07 49.4 0.5 31 4-34 85-116 (160)
253 1g8f_A Sulfate adenylyltransfe 93.5 0.064 2.2E-06 54.4 5.0 44 118-161 376-419 (511)
254 1cr0_A DNA primase/helicase; R 93.5 0.043 1.5E-06 51.5 3.5 25 137-161 35-59 (296)
255 1yrb_A ATP(GTP)binding protein 93.5 0.049 1.7E-06 49.8 3.9 25 136-160 13-37 (262)
256 1nlf_A Regulatory protein REPA 93.5 0.041 1.4E-06 51.2 3.3 24 137-160 30-53 (279)
257 1oix_A RAS-related protein RAB 93.4 0.048 1.6E-06 47.4 3.5 24 137-160 29-52 (191)
258 2cbz_A Multidrug resistance-as 93.4 0.038 1.3E-06 50.2 2.9 25 137-161 31-55 (237)
259 1pzn_A RAD51, DNA repair and r 93.4 0.05 1.7E-06 52.5 3.8 35 126-160 120-154 (349)
260 2ged_A SR-beta, signal recogni 93.4 0.07 2.4E-06 46.0 4.5 25 136-160 47-71 (193)
261 2ocp_A DGK, deoxyguanosine kin 93.3 0.046 1.6E-06 49.6 3.3 25 137-161 2-26 (241)
262 2j37_W Signal recognition part 93.3 0.082 2.8E-06 53.6 5.5 28 135-162 99-126 (504)
263 2f9l_A RAB11B, member RAS onco 93.3 0.044 1.5E-06 47.9 3.1 24 137-160 5-28 (199)
264 2wji_A Ferrous iron transport 93.3 0.048 1.6E-06 46.0 3.2 23 138-160 4-26 (165)
265 1b0u_A Histidine permease; ABC 93.3 0.04 1.4E-06 51.0 2.9 23 137-159 32-54 (262)
266 3gfo_A Cobalt import ATP-bindi 93.2 0.04 1.4E-06 51.3 2.9 22 138-159 35-56 (275)
267 1sky_E F1-ATPase, F1-ATP synth 93.2 0.11 3.7E-06 52.0 6.1 25 139-163 153-177 (473)
268 2d2e_A SUFC protein; ABC-ATPas 93.2 0.046 1.6E-06 50.1 3.2 22 138-159 30-51 (250)
269 2eyu_A Twitching motility prot 93.2 0.063 2.2E-06 49.6 4.1 95 136-234 24-135 (261)
270 1ji0_A ABC transporter; ATP bi 93.2 0.043 1.5E-06 50.0 2.9 22 138-159 33-54 (240)
271 2zej_A Dardarin, leucine-rich 93.2 0.038 1.3E-06 47.6 2.4 22 139-160 4-25 (184)
272 1g6h_A High-affinity branched- 93.1 0.043 1.5E-06 50.5 2.9 24 137-160 33-56 (257)
273 4g1u_C Hemin import ATP-bindin 93.1 0.044 1.5E-06 50.8 2.8 23 137-159 37-59 (266)
274 3cr8_A Sulfate adenylyltranfer 93.1 0.075 2.6E-06 54.5 4.8 26 137-162 369-394 (552)
275 2zu0_C Probable ATP-dependent 93.1 0.05 1.7E-06 50.4 3.2 23 137-159 46-68 (267)
276 2olj_A Amino acid ABC transpor 93.1 0.045 1.5E-06 50.6 2.9 23 137-159 50-72 (263)
277 3eph_A TRNA isopentenyltransfe 93.0 0.056 1.9E-06 52.9 3.6 25 138-162 3-27 (409)
278 2ff7_A Alpha-hemolysin translo 93.0 0.047 1.6E-06 50.0 2.9 23 137-159 35-57 (247)
279 2pze_A Cystic fibrosis transme 93.0 0.047 1.6E-06 49.3 2.9 24 137-160 34-57 (229)
280 1u94_A RECA protein, recombina 93.0 0.14 4.6E-06 49.6 6.3 42 121-162 46-88 (356)
281 1sgw_A Putative ABC transporte 93.0 0.039 1.3E-06 49.3 2.3 22 138-159 36-57 (214)
282 2axn_A 6-phosphofructo-2-kinas 93.0 0.063 2.2E-06 54.7 4.1 27 136-162 34-60 (520)
283 1mv5_A LMRA, multidrug resista 93.0 0.051 1.8E-06 49.5 3.1 25 136-160 27-51 (243)
284 2r8r_A Sensor protein; KDPD, P 93.0 0.066 2.2E-06 48.2 3.7 25 139-163 8-32 (228)
285 1z2a_A RAS-related protein RAB 92.9 0.072 2.5E-06 44.5 3.8 24 137-160 5-28 (168)
286 2qm8_A GTPase/ATPase; G protei 92.9 0.1 3.5E-06 50.1 5.3 27 135-161 53-79 (337)
287 2p67_A LAO/AO transport system 92.9 0.099 3.4E-06 50.2 5.2 28 134-161 53-80 (341)
288 1vpl_A ABC transporter, ATP-bi 92.9 0.049 1.7E-06 50.1 2.9 23 137-159 41-63 (256)
289 2h92_A Cytidylate kinase; ross 92.9 0.049 1.7E-06 48.4 2.8 25 138-162 4-28 (219)
290 3end_A Light-independent proto 92.9 0.075 2.6E-06 50.0 4.2 28 135-162 39-66 (307)
291 1ls1_A Signal recognition part 92.9 0.074 2.5E-06 50.0 4.1 27 136-162 97-123 (295)
292 2wjg_A FEOB, ferrous iron tran 92.9 0.068 2.3E-06 45.8 3.6 24 137-160 7-30 (188)
293 2nzj_A GTP-binding protein REM 92.9 0.069 2.3E-06 45.0 3.6 24 137-160 4-27 (175)
294 2ghi_A Transport protein; mult 92.8 0.051 1.7E-06 50.2 2.9 23 137-159 46-68 (260)
295 2ce2_X GTPase HRAS; signaling 92.8 0.055 1.9E-06 44.9 2.9 22 139-160 5-26 (166)
296 2ixe_A Antigen peptide transpo 92.8 0.052 1.8E-06 50.5 2.9 24 137-160 45-68 (271)
297 2v9p_A Replication protein E1; 92.8 0.058 2E-06 51.0 3.2 25 136-160 125-149 (305)
298 1fzq_A ADP-ribosylation factor 92.8 0.087 3E-06 45.2 4.1 26 135-160 14-39 (181)
299 2qi9_C Vitamin B12 import ATP- 92.7 0.053 1.8E-06 49.7 2.9 23 138-160 27-49 (249)
300 2yz2_A Putative ABC transporte 92.7 0.054 1.8E-06 50.2 2.9 23 137-159 33-55 (266)
301 2ihy_A ABC transporter, ATP-bi 92.7 0.055 1.9E-06 50.5 2.9 24 137-160 47-70 (279)
302 2nq2_C Hypothetical ABC transp 92.6 0.056 1.9E-06 49.7 2.9 23 138-160 32-54 (253)
303 1v5w_A DMC1, meiotic recombina 92.6 0.1 3.5E-06 50.1 4.9 37 124-160 109-145 (343)
304 3con_A GTPase NRAS; structural 92.6 0.066 2.2E-06 46.1 3.1 23 138-160 22-44 (190)
305 2zts_A Putative uncharacterize 92.5 0.041 1.4E-06 49.7 1.8 24 137-160 30-53 (251)
306 1m8p_A Sulfate adenylyltransfe 92.5 0.14 4.7E-06 52.9 5.9 27 136-162 395-421 (573)
307 2vp4_A Deoxynucleoside kinase; 92.5 0.06 2E-06 48.5 2.8 24 136-159 19-42 (230)
308 2lkc_A Translation initiation 92.5 0.075 2.6E-06 45.0 3.3 25 136-160 7-31 (178)
309 4gzl_A RAS-related C3 botulinu 92.5 0.075 2.6E-06 46.6 3.4 41 118-160 13-53 (204)
310 2fn4_A P23, RAS-related protei 92.5 0.098 3.3E-06 44.3 4.0 26 135-160 7-32 (181)
311 1ky3_A GTP-binding protein YPT 92.4 0.082 2.8E-06 44.8 3.5 25 136-160 7-31 (182)
312 3lda_A DNA repair protein RAD5 92.4 0.061 2.1E-06 52.9 2.9 37 122-158 163-199 (400)
313 1u8z_A RAS-related protein RAL 92.4 0.1 3.5E-06 43.4 4.1 24 137-160 4-27 (168)
314 1p5z_B DCK, deoxycytidine kina 92.4 0.043 1.5E-06 50.5 1.8 26 136-161 23-48 (263)
315 3f9v_A Minichromosome maintena 92.4 0.036 1.2E-06 57.6 1.4 48 114-161 295-351 (595)
316 1c1y_A RAS-related protein RAP 92.4 0.073 2.5E-06 44.4 3.1 22 139-160 5-26 (167)
317 1nrj_B SR-beta, signal recogni 92.4 0.081 2.8E-06 46.7 3.5 25 136-160 11-35 (218)
318 1kao_A RAP2A; GTP-binding prot 92.4 0.073 2.5E-06 44.3 3.1 22 139-160 5-26 (167)
319 1r8s_A ADP-ribosylation factor 92.3 0.078 2.7E-06 44.2 3.2 21 140-160 3-23 (164)
320 1svi_A GTP-binding protein YSX 92.3 0.072 2.5E-06 46.0 3.0 26 135-160 21-46 (195)
321 3sop_A Neuronal-specific septi 92.3 0.08 2.7E-06 49.1 3.4 24 139-162 4-27 (270)
322 1ek0_A Protein (GTP-binding pr 92.3 0.071 2.4E-06 44.6 2.8 22 139-160 5-26 (170)
323 1z08_A RAS-related protein RAB 92.3 0.076 2.6E-06 44.5 3.0 24 137-160 6-29 (170)
324 1z0j_A RAB-22, RAS-related pro 92.2 0.071 2.4E-06 44.7 2.8 23 138-160 7-29 (170)
325 2erx_A GTP-binding protein DI- 92.2 0.073 2.5E-06 44.6 2.9 23 138-160 4-26 (172)
326 1t3g_A X-linked interleukin-1 92.2 0.075 2.6E-06 45.1 2.9 32 4-35 82-114 (159)
327 3io5_A Recombination and repai 92.2 0.12 4.2E-06 48.9 4.6 23 139-161 30-52 (333)
328 3tw8_B RAS-related protein RAB 92.2 0.088 3E-06 44.6 3.4 26 135-160 7-32 (181)
329 3fdi_A Uncharacterized protein 92.2 0.081 2.8E-06 46.7 3.2 27 137-163 6-32 (201)
330 4edh_A DTMP kinase, thymidylat 92.2 0.1 3.6E-06 46.5 3.9 26 137-162 6-31 (213)
331 1tq4_A IIGP1, interferon-induc 92.2 0.058 2E-06 53.2 2.5 26 135-160 67-92 (413)
332 1m7b_A RND3/RHOE small GTP-bin 92.1 0.075 2.6E-06 45.6 2.9 24 137-160 7-30 (184)
333 2gj8_A MNME, tRNA modification 92.1 0.072 2.4E-06 45.4 2.7 23 138-160 5-27 (172)
334 2hxs_A RAB-26, RAS-related pro 92.1 0.083 2.8E-06 44.7 3.1 25 137-161 6-30 (178)
335 2b8t_A Thymidine kinase; deoxy 92.1 0.11 3.8E-06 46.6 4.1 28 136-163 11-38 (223)
336 1bif_A 6-phosphofructo-2-kinas 92.1 0.093 3.2E-06 52.8 3.9 27 137-163 39-65 (469)
337 2pjz_A Hypothetical protein ST 92.1 0.073 2.5E-06 49.2 2.9 21 138-158 31-51 (263)
338 1cp2_A CP2, nitrogenase iron p 92.1 0.096 3.3E-06 48.1 3.7 25 138-162 2-26 (269)
339 3q72_A GTP-binding protein RAD 92.0 0.074 2.5E-06 44.5 2.6 22 139-160 4-25 (166)
340 1nij_A Hypothetical protein YJ 92.0 0.085 2.9E-06 50.2 3.3 24 136-159 3-26 (318)
341 3q85_A GTP-binding protein REM 92.0 0.11 3.7E-06 43.5 3.7 22 138-159 3-24 (169)
342 3ihw_A Centg3; RAS, centaurin, 92.0 0.085 2.9E-06 45.5 3.0 24 137-160 20-43 (184)
343 1r2q_A RAS-related protein RAB 91.9 0.089 3E-06 44.0 3.1 23 138-160 7-29 (170)
344 3bgw_A DNAB-like replicative h 91.9 0.15 5.3E-06 50.8 5.3 42 120-162 181-222 (444)
345 3kta_A Chromosome segregation 91.9 0.086 2.9E-06 45.3 3.0 21 139-159 28-48 (182)
346 3t1o_A Gliding protein MGLA; G 91.9 0.085 2.9E-06 45.4 3.0 24 137-160 14-37 (198)
347 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.089 3E-06 44.5 3.1 24 137-160 7-30 (177)
348 3ld9_A DTMP kinase, thymidylat 91.9 0.12 4.3E-06 46.3 4.1 27 136-162 20-46 (223)
349 3nh6_A ATP-binding cassette SU 91.9 0.067 2.3E-06 50.6 2.4 23 137-159 80-102 (306)
350 2www_A Methylmalonic aciduria 91.9 0.12 4.3E-06 49.7 4.4 27 135-161 72-98 (349)
351 2gks_A Bifunctional SAT/APS ki 91.8 0.16 5.4E-06 52.1 5.3 27 136-162 371-397 (546)
352 3c5c_A RAS-like protein 12; GD 91.8 0.09 3.1E-06 45.4 3.1 24 137-160 21-44 (187)
353 2afh_E Nitrogenase iron protei 91.8 0.11 3.9E-06 48.3 3.9 25 138-162 3-27 (289)
354 1z0f_A RAB14, member RAS oncog 91.8 0.12 4.1E-06 43.6 3.8 25 136-160 14-38 (179)
355 3kkq_A RAS-related protein M-R 91.8 0.086 2.9E-06 45.0 2.8 25 136-160 17-41 (183)
356 3v9p_A DTMP kinase, thymidylat 91.7 0.1 3.4E-06 47.1 3.3 26 137-162 25-50 (227)
357 2z43_A DNA repair and recombin 91.7 0.1 3.5E-06 49.7 3.6 37 124-160 94-130 (324)
358 1vg8_A RAS-related protein RAB 91.7 0.11 3.7E-06 45.3 3.5 25 136-160 7-31 (207)
359 2i1q_A DNA repair and recombin 91.7 0.11 3.7E-06 49.4 3.7 37 124-160 85-121 (322)
360 3pqc_A Probable GTP-binding pr 91.7 0.091 3.1E-06 45.1 3.0 25 136-160 22-46 (195)
361 2iwr_A Centaurin gamma 1; ANK 91.7 0.077 2.6E-06 45.0 2.4 23 138-160 8-30 (178)
362 2bme_A RAB4A, RAS-related prot 91.7 0.11 3.8E-06 44.3 3.5 25 136-160 9-33 (186)
363 3tqf_A HPR(Ser) kinase; transf 91.7 0.11 3.7E-06 44.6 3.3 22 138-159 17-38 (181)
364 1lw7_A Transcriptional regulat 91.6 0.1 3.6E-06 50.5 3.6 25 137-161 170-194 (365)
365 4dsu_A GTPase KRAS, isoform 2B 91.6 0.09 3.1E-06 44.9 2.8 23 138-160 5-27 (189)
366 3fvq_A Fe(3+) IONS import ATP- 91.6 0.089 3E-06 50.9 3.0 23 137-159 30-52 (359)
367 1m2o_B GTP-binding protein SAR 91.6 0.092 3.2E-06 45.4 2.9 23 138-160 24-46 (190)
368 1g16_A RAS-related protein SEC 91.6 0.12 4.3E-06 43.1 3.6 23 138-160 4-26 (170)
369 3def_A T7I23.11 protein; chlor 91.6 0.15 5E-06 46.9 4.4 35 126-160 25-59 (262)
370 1x6v_B Bifunctional 3'-phospho 91.5 0.13 4.5E-06 53.4 4.4 27 136-162 51-77 (630)
371 2j67_A TOLL like receptor 10; 91.5 0.042 1.4E-06 47.6 0.5 29 4-32 104-133 (178)
372 3lv8_A DTMP kinase, thymidylat 91.5 0.12 4.1E-06 46.9 3.6 26 137-162 27-52 (236)
373 2cjw_A GTP-binding protein GEM 91.5 0.11 3.7E-06 45.2 3.2 23 137-159 6-28 (192)
374 2cxx_A Probable GTP-binding pr 91.5 0.086 3E-06 45.1 2.5 22 139-160 3-24 (190)
375 1upt_A ARL1, ADP-ribosylation 91.5 0.14 4.7E-06 42.9 3.8 24 137-160 7-30 (171)
376 2bbs_A Cystic fibrosis transme 91.5 0.087 3E-06 49.4 2.7 25 137-161 64-88 (290)
377 3tui_C Methionine import ATP-b 91.4 0.1 3.4E-06 50.6 3.2 22 137-158 54-75 (366)
378 2a9k_A RAS-related protein RAL 91.4 0.098 3.4E-06 44.5 2.8 24 137-160 18-41 (187)
379 3bwd_D RAC-like GTP-binding pr 91.4 0.11 3.7E-06 44.1 3.1 23 138-160 9-31 (182)
380 1z47_A CYSA, putative ABC-tran 91.4 0.1 3.5E-06 50.4 3.2 23 137-159 41-63 (355)
381 3ch4_B Pmkase, phosphomevalona 91.4 0.15 5.3E-06 44.9 4.0 26 136-161 10-35 (202)
382 3bc1_A RAS-related protein RAB 91.4 0.14 4.9E-06 43.8 3.8 25 136-160 10-34 (195)
383 2ewv_A Twitching motility prot 91.3 0.14 4.7E-06 49.9 4.1 26 136-161 135-160 (372)
384 3dz8_A RAS-related protein RAB 91.3 0.11 3.7E-06 44.9 3.0 25 137-161 23-47 (191)
385 2atv_A RERG, RAS-like estrogen 91.3 0.11 3.7E-06 45.1 3.1 24 137-160 28-51 (196)
386 3tkl_A RAS-related protein RAB 91.3 0.14 4.9E-06 44.0 3.8 25 136-160 15-39 (196)
387 2efe_B Small GTP-binding prote 91.3 0.11 3.8E-06 44.0 3.0 24 137-160 12-35 (181)
388 1gwn_A RHO-related GTP-binding 91.3 0.13 4.5E-06 45.2 3.6 25 136-160 27-51 (205)
389 2y8e_A RAB-protein 6, GH09086P 91.3 0.098 3.3E-06 44.2 2.7 23 138-160 15-37 (179)
390 1xp8_A RECA protein, recombina 91.2 0.28 9.5E-06 47.6 6.2 43 120-162 56-99 (366)
391 3cbq_A GTP-binding protein REM 91.2 0.11 3.8E-06 45.2 3.0 23 136-158 22-44 (195)
392 1h65_A Chloroplast outer envel 91.2 0.17 5.9E-06 46.6 4.5 26 135-160 37-62 (270)
393 2yyz_A Sugar ABC transporter, 91.2 0.11 3.8E-06 50.3 3.2 23 137-159 29-51 (359)
394 2g6b_A RAS-related protein RAB 91.2 0.12 4E-06 43.8 3.1 24 137-160 10-33 (180)
395 3rlf_A Maltose/maltodextrin im 91.2 0.11 3.8E-06 50.6 3.2 23 137-159 29-51 (381)
396 3t5g_A GTP-binding protein RHE 91.2 0.12 4.1E-06 43.9 3.1 25 136-160 5-29 (181)
397 2oil_A CATX-8, RAS-related pro 91.1 0.15 5.2E-06 43.9 3.8 25 136-160 24-48 (193)
398 2bov_A RAla, RAS-related prote 91.1 0.15 5.2E-06 44.2 3.8 25 136-160 13-37 (206)
399 1mh1_A RAC1; GTP-binding, GTPa 91.1 0.16 5.3E-06 43.2 3.8 22 138-159 6-27 (186)
400 2it1_A 362AA long hypothetical 91.1 0.11 3.9E-06 50.2 3.2 23 137-159 29-51 (362)
401 3d31_A Sulfate/molybdate ABC t 91.1 0.1 3.5E-06 50.3 2.8 23 137-159 26-48 (348)
402 1g29_1 MALK, maltose transport 91.0 0.12 4E-06 50.3 3.2 22 137-158 29-50 (372)
403 3hdt_A Putative kinase; struct 91.0 0.14 5E-06 45.9 3.6 27 137-163 14-40 (223)
404 1zd9_A ADP-ribosylation factor 90.9 0.13 4.3E-06 44.3 3.1 24 137-160 22-45 (188)
405 3oes_A GTPase rhebl1; small GT 90.9 0.12 4E-06 45.1 2.9 25 136-160 23-47 (201)
406 3lxx_A GTPase IMAP family memb 90.9 0.15 5E-06 46.0 3.6 26 135-160 27-52 (239)
407 2gf9_A RAS-related protein RAB 90.9 0.12 4E-06 44.5 2.8 24 137-160 22-45 (189)
408 2ew1_A RAS-related protein RAB 90.9 0.12 4E-06 45.4 2.9 25 136-160 25-49 (201)
409 2ffh_A Protein (FFH); SRP54, s 90.9 0.15 5.3E-06 50.4 4.0 28 136-163 97-124 (425)
410 3reg_A RHO-like small GTPase; 90.9 0.13 4.3E-06 44.5 3.1 24 137-160 23-46 (194)
411 1f6b_A SAR1; gtpases, N-termin 90.9 0.097 3.3E-06 45.7 2.3 23 138-160 26-48 (198)
412 3upu_A ATP-dependent DNA helic 90.9 0.16 5.6E-06 50.8 4.3 25 138-162 46-70 (459)
413 1v43_A Sugar-binding transport 90.9 0.12 4.1E-06 50.2 3.2 23 137-159 37-59 (372)
414 2fg5_A RAB-22B, RAS-related pr 90.9 0.12 4.1E-06 44.7 2.9 24 137-160 23-46 (192)
415 1zbd_A Rabphilin-3A; G protein 90.9 0.12 4.1E-06 44.9 2.9 24 137-160 8-31 (203)
416 4dzz_A Plasmid partitioning pr 90.9 0.17 5.7E-06 44.2 3.8 25 138-162 2-27 (206)
417 2fh5_B SR-beta, signal recogni 90.8 0.13 4.4E-06 45.2 3.1 24 137-160 7-30 (214)
418 2a5j_A RAS-related protein RAB 90.8 0.13 4.5E-06 44.3 3.1 24 137-160 21-44 (191)
419 1pui_A ENGB, probable GTP-bind 90.8 0.07 2.4E-06 46.8 1.3 25 136-160 25-49 (210)
420 3clv_A RAB5 protein, putative; 90.8 0.18 6.3E-06 43.4 4.0 24 137-160 7-30 (208)
421 2q3h_A RAS homolog gene family 90.8 0.12 4.1E-06 44.9 2.7 24 137-160 20-43 (201)
422 4bas_A ADP-ribosylation factor 90.7 0.13 4.4E-06 44.4 3.0 26 135-160 15-40 (199)
423 1oxx_K GLCV, glucose, ABC tran 90.7 0.094 3.2E-06 50.7 2.2 23 137-159 31-53 (353)
424 4tmk_A Protein (thymidylate ki 90.7 0.16 5.5E-06 45.2 3.6 25 138-162 4-28 (213)
425 1x3s_A RAS-related protein RAB 90.7 0.13 4.3E-06 44.3 2.8 24 137-160 15-38 (195)
426 2qu8_A Putative nucleolar GTP- 90.7 0.14 4.9E-06 45.6 3.3 25 136-160 28-52 (228)
427 2p5s_A RAS and EF-hand domain 90.6 0.14 4.7E-06 44.5 3.1 25 136-160 27-51 (199)
428 1moz_A ARL1, ADP-ribosylation 90.6 0.19 6.3E-06 42.7 3.9 24 136-159 17-40 (183)
429 1jwy_B Dynamin A GTPase domain 90.6 0.15 5.2E-06 48.0 3.5 26 135-160 22-47 (315)
430 3llu_A RAS-related GTP-binding 90.6 0.12 4.1E-06 44.9 2.6 24 137-160 20-43 (196)
431 2yv5_A YJEQ protein; hydrolase 90.6 0.18 6.3E-06 47.4 4.1 31 123-158 156-186 (302)
432 2qnr_A Septin-2, protein NEDD5 90.5 0.11 3.8E-06 48.9 2.5 22 139-160 20-41 (301)
433 1ksh_A ARF-like protein 2; sma 90.5 0.12 4.3E-06 44.1 2.6 25 136-160 17-41 (186)
434 2o52_A RAS-related protein RAB 90.5 0.12 4.2E-06 45.0 2.6 25 136-160 24-48 (200)
435 2fu5_C RAS-related protein RAB 90.5 0.11 3.8E-06 44.2 2.3 25 136-160 7-31 (183)
436 1fyx_A TOLL-like receptor 2; b 90.4 0.025 8.5E-07 47.5 -1.9 33 4-36 74-108 (149)
437 1ega_A Protein (GTP-binding pr 90.4 0.15 5.3E-06 47.9 3.4 25 136-160 7-31 (301)
438 1z06_A RAS-related protein RAB 90.4 0.19 6.6E-06 43.1 3.8 25 136-160 19-43 (189)
439 2bcg_Y Protein YP2, GTP-bindin 90.3 0.19 6.4E-06 43.8 3.7 25 136-160 7-31 (206)
440 2g3y_A GTP-binding protein GEM 90.3 0.15 5E-06 45.4 2.9 23 137-159 37-59 (211)
441 2h17_A ADP-ribosylation factor 90.3 0.12 4.2E-06 44.1 2.4 24 137-160 21-44 (181)
442 3tmk_A Thymidylate kinase; pho 90.3 0.17 5.8E-06 45.2 3.3 26 137-162 5-30 (216)
443 2gf0_A GTP-binding protein DI- 90.2 0.2 6.8E-06 43.2 3.7 23 137-159 8-30 (199)
444 3gd7_A Fusion complex of cysti 90.2 0.14 4.9E-06 50.0 3.0 23 137-159 47-69 (390)
445 2j1l_A RHO-related GTP-binding 90.2 0.13 4.5E-06 45.4 2.5 24 137-160 34-57 (214)
446 2il1_A RAB12; G-protein, GDP, 90.1 0.12 4.1E-06 44.7 2.2 25 137-161 26-50 (192)
447 3k53_A Ferrous iron transport 90.1 0.17 5.7E-06 46.8 3.3 24 137-160 3-26 (271)
448 2atx_A Small GTP binding prote 90.1 0.15 5.3E-06 43.9 2.9 24 137-160 18-41 (194)
449 3cph_A RAS-related protein SEC 90.1 0.16 5.6E-06 44.3 3.1 24 137-160 20-43 (213)
450 3fkq_A NTRC-like two-domain pr 90.1 0.25 8.5E-06 48.0 4.6 28 134-161 140-168 (373)
451 2obl_A ESCN; ATPase, hydrolase 90.0 0.16 5.4E-06 49.0 3.1 26 137-162 71-96 (347)
452 2j0v_A RAC-like GTP-binding pr 90.0 0.16 5.3E-06 44.6 2.9 24 137-160 9-32 (212)
453 4dkx_A RAS-related protein RAB 90.0 0.15 5.2E-06 45.4 2.8 22 139-160 15-36 (216)
454 1zj6_A ADP-ribosylation factor 90.0 0.2 6.8E-06 42.9 3.5 25 136-160 15-39 (187)
455 2b6h_A ADP-ribosylation factor 90.0 0.14 4.9E-06 44.3 2.6 23 137-159 29-51 (192)
456 2fv8_A H6, RHO-related GTP-bin 90.0 0.16 5.4E-06 44.5 2.9 24 137-160 25-48 (207)
457 3kjh_A CO dehydrogenase/acetyl 90.0 0.17 5.7E-06 45.6 3.1 22 140-161 3-24 (254)
458 2gco_A H9, RHO-related GTP-bin 89.9 0.17 5.7E-06 44.2 2.9 24 137-160 25-48 (201)
459 4i1u_A Dephospho-COA kinase; s 89.8 0.2 6.7E-06 44.6 3.3 24 136-159 8-31 (210)
460 3ug7_A Arsenical pump-driving 89.8 0.32 1.1E-05 46.8 5.1 27 135-161 24-50 (349)
461 2gza_A Type IV secretion syste 89.8 0.13 4.5E-06 49.8 2.4 24 138-161 176-199 (361)
462 3q3j_B RHO-related GTP-binding 89.8 0.18 6.1E-06 44.6 3.1 24 137-160 27-50 (214)
463 2rcn_A Probable GTPase ENGC; Y 89.7 0.18 6E-06 48.8 3.2 22 138-159 216-237 (358)
464 3iev_A GTP-binding protein ERA 89.7 0.18 6.3E-06 47.5 3.3 26 135-160 8-33 (308)
465 3zq6_A Putative arsenical pump 89.6 0.25 8.5E-06 47.0 4.1 25 137-161 14-38 (324)
466 1p9r_A General secretion pathw 89.6 0.22 7.4E-06 49.2 3.8 26 136-161 166-191 (418)
467 2hup_A RAS-related protein RAB 89.5 0.22 7.7E-06 43.4 3.5 25 136-160 28-52 (201)
468 2h57_A ADP-ribosylation factor 89.5 0.12 4.1E-06 44.5 1.6 25 137-161 21-45 (190)
469 1dek_A Deoxynucleoside monopho 89.4 0.24 8.2E-06 45.0 3.6 23 138-160 2-24 (241)
470 2qag_B Septin-6, protein NEDD5 89.3 0.18 6E-06 49.9 2.9 25 136-160 41-65 (427)
471 4hlc_A DTMP kinase, thymidylat 89.3 0.26 8.9E-06 43.6 3.8 24 138-161 3-26 (205)
472 2f7s_A C25KG, RAS-related prot 89.3 0.18 6.1E-06 44.4 2.7 25 136-160 24-48 (217)
473 4dhe_A Probable GTP-binding pr 89.3 0.14 4.9E-06 45.2 2.1 25 136-160 28-52 (223)
474 3io3_A DEHA2D07832P; chaperone 89.3 0.26 8.9E-06 47.4 4.0 27 135-161 16-42 (348)
475 1c9k_A COBU, adenosylcobinamid 89.3 0.17 5.8E-06 43.8 2.4 21 140-160 2-22 (180)
476 1f2t_A RAD50 ABC-ATPase; DNA d 89.2 0.25 8.5E-06 41.2 3.4 22 138-159 24-45 (149)
477 1byi_A Dethiobiotin synthase; 89.2 0.28 9.4E-06 43.5 3.9 24 138-161 2-26 (224)
478 3ea0_A ATPase, para family; al 89.2 0.25 8.7E-06 44.3 3.7 26 136-161 3-29 (245)
479 2npi_A Protein CLP1; CLP1-PCF1 89.1 0.17 5.7E-06 50.7 2.6 26 136-161 137-162 (460)
480 2x77_A ADP-ribosylation factor 89.0 0.24 8.3E-06 42.4 3.3 24 136-159 21-44 (189)
481 2xtp_A GTPase IMAP family memb 89.0 0.23 7.9E-06 45.3 3.3 25 136-160 21-45 (260)
482 2pt7_A CAG-ALFA; ATPase, prote 89.0 0.15 5E-06 48.8 2.0 24 138-161 172-195 (330)
483 2oze_A ORF delta'; para, walke 88.9 0.2 6.7E-06 46.8 2.8 37 122-161 22-61 (298)
484 3cpj_B GTP-binding protein YPT 88.8 0.23 7.9E-06 44.0 3.1 24 137-160 13-36 (223)
485 3ez2_A Plasmid partition prote 88.8 0.44 1.5E-05 46.6 5.4 28 134-161 105-133 (398)
486 3b1v_A Ferrous iron uptake tra 88.5 0.27 9.1E-06 45.6 3.4 24 137-160 3-26 (272)
487 1wf3_A GTP-binding protein; GT 88.5 0.26 8.8E-06 46.4 3.3 25 136-160 6-30 (301)
488 3ozx_A RNAse L inhibitor; ATP 88.5 0.21 7.2E-06 51.1 2.9 23 138-160 295-317 (538)
489 1yqt_A RNAse L inhibitor; ATP- 88.4 0.23 8E-06 50.8 3.2 23 138-160 313-335 (538)
490 2qag_C Septin-7; cell cycle, c 88.4 0.2 6.9E-06 49.5 2.6 21 140-160 34-54 (418)
491 2dpy_A FLII, flagellum-specifi 88.4 0.24 8.1E-06 49.3 3.1 26 137-162 157-182 (438)
492 1zcb_A G alpha I/13; GTP-bindi 88.3 0.28 9.7E-06 47.4 3.5 21 137-157 33-53 (362)
493 2aka_B Dynamin-1; fusion prote 88.3 0.39 1.3E-05 44.6 4.5 25 136-160 25-49 (299)
494 3euj_A Chromosome partition pr 88.3 0.25 8.5E-06 49.7 3.2 23 138-160 30-52 (483)
495 2qtf_A Protein HFLX, GTP-bindi 88.3 0.23 7.8E-06 48.2 2.9 27 135-161 177-203 (364)
496 1tf7_A KAIC; homohexamer, hexa 88.2 0.32 1.1E-05 49.6 4.1 37 125-161 269-305 (525)
497 3hjn_A DTMP kinase, thymidylat 88.2 0.36 1.2E-05 42.3 3.9 25 139-163 2-26 (197)
498 3k9g_A PF-32 protein; ssgcid, 88.2 0.31 1.1E-05 44.6 3.6 27 135-161 25-52 (267)
499 3iby_A Ferrous iron transport 88.2 0.24 8.3E-06 45.4 2.8 23 138-160 2-24 (256)
500 1yqt_A RNAse L inhibitor; ATP- 88.1 0.25 8.6E-06 50.5 3.2 23 137-159 47-69 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.6e-42 Score=358.50 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=211.4
Q ss_pred ccccchHHHHHhhhccC-CCCeeEEEEecCCCChhHHHHHHHHh----HHhH------HH------------HHHHHHHH
Q 037205 117 VGVESRVEEIESLLSVE-SKDVYALGIWGIGGIGKTTIARATFD----KISR------YL------------LATKLISN 173 (439)
Q Consensus 117 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~----~~~~------f~------------~~~~ll~~ 173 (439)
+||+.++++|.++|... ..+.++|+|+|||||||||||+++|+ +... |+ ++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999754 44689999999999999999999997 2322 32 55667777
Q ss_pred HhcCCC-----CCC------cHHHHHHHhccC-CceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhcC-C
Q 037205 174 LLKDEN-----AIP------GIDLNFRRLSRM-KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWG-V 240 (439)
Q Consensus 174 l~~~~~-----~~~------~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~-~ 240 (439)
+..... ... ....+++.|.++ ++||||||||+.+++ .+.. .+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 765421 111 267888999996 999999999998876 3322 27999999999999998876 4
Q ss_pred CeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCcc
Q 037205 241 SKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINK-LQRILYPS 319 (439)
Q Consensus 241 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~~~ 319 (439)
..+|+|++|+.++|++||.+++|.... .+.+.+++.+|+++|+|+||||+++|+.|+.++ .+|...+.. +.......
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSST
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHH
Confidence 468999999999999999999976543 357788999999999999999999999998774 333333332 22224567
Q ss_pred HHHHHHHhhcCCCHHhHHHHh-----------cccccccc---------cC--CCc-----------hhHHHHHHhhCCc
Q 037205 320 ILEVLKISYDGLDNKEKNIFL-----------GVACFFQV---------RI--GFN-----------LEIGVSVLVDKSL 366 (439)
Q Consensus 320 i~~~l~~Sy~~L~~~~k~~fl-----------~la~f~~~---------~~--~~~-----------~~~~l~~L~~~sL 366 (439)
+..+|.+||+.||+..|.||+ |||+||.+ ++ |+. ...++++|+++||
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsL 442 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGA 442 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSS
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 888899999999999999999 99999976 33 332 1237999999999
Q ss_pred eEEccC---CeEEecHHHHHHHHHHHhhhc
Q 037205 367 IVISNN---NKITMHDLLQELGRDIVSQES 393 (439)
Q Consensus 367 i~~~~~---~~~~mHdlv~~~a~~i~~~e~ 393 (439)
|+.... .+|+|||+||+||++++.+++
T Consensus 443 l~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 443 LLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 997643 469999999999999887765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-38 Score=358.69 Aligned_cols=271 Identities=21% Similarity=0.276 Sum_probs=219.0
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----------HH------------HHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----------YL------------LAT 168 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f~------------~~~ 168 (439)
..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++... |+ ...
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 45678999999999999999766678999999999999999999999988532 32 244
Q ss_pred HHHHHHhcCCC---CCC-----cHHHHHHHhccC--CceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-
Q 037205 169 KLISNLLKDEN---AIP-----GIDLNFRRLSRM--KVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN- 237 (439)
Q Consensus 169 ~ll~~l~~~~~---~~~-----~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~- 237 (439)
.++..+..... ... ....++..+.++ ++||||||||+..+|+.+ ++||+||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 45555544332 111 344555566655 999999999998877664 579999999999998854
Q ss_pred cCCCeEEEcCC-CCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcCC
Q 037205 238 WGVSKIYEMEA-LEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRIL 316 (439)
Q Consensus 238 ~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~ 316 (439)
++....+++++ |+.++|++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 45667899996 99999999999988433 234456799999999999999999999998765 57999999886543
Q ss_pred C-----------ccHHHHHHHhhcCCCHHhHHHHhcccccccc-------------cCCCchhHHHHHHhhCCceEEccC
Q 037205 317 Y-----------PSILEVLKISYDGLDNKEKNIFLGVACFFQV-------------RIGFNLEIGVSVLVDKSLIVISNN 372 (439)
Q Consensus 317 ~-----------~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~-------------~~~~~~~~~l~~L~~~sLi~~~~~ 372 (439)
. ..+..+|.+||+.|++++|.||++||+||.+ .++..++.++++|+++|||+...+
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEES
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecC
Confidence 1 3589999999999999999999999999986 233456778999999999998766
Q ss_pred Ce---EEecHHHHHHHHHHHhhh
Q 037205 373 NK---ITMHDLLQELGRDIVSQE 392 (439)
Q Consensus 373 ~~---~~mHdlv~~~a~~i~~~e 392 (439)
+. |+||+|||+||++.+.++
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCceEEEecHHHHHHHHhhhhHH
Confidence 64 999999999999987765
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=312.68 Aligned_cols=294 Identities=21% Similarity=0.262 Sum_probs=219.9
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh---H-------HH---------HHHH--
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS---R-------YL---------LATK-- 169 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~-------f~---------~~~~-- 169 (439)
..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++.. . |+ +...
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~ 200 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence 4567899999999999999986556789999999999999999999987642 2 32 1222
Q ss_pred -HHHHHhcCCC----CCC----cHHHHHHHhcc--CCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc
Q 037205 170 -LISNLLKDEN----AIP----GIDLNFRRLSR--MKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 170 -ll~~l~~~~~----~~~----~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 238 (439)
+...+..... ... ....+...+.+ +++||||||+|+..+++.+ ++|++||||||++.++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 2223321111 111 34556666666 7899999999998776543 5789999999999887665
Q ss_pred CCCeEEEc---CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCCCHHHHHHHHHHHhcC
Q 037205 239 GVSKIYEM---EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKREKEVWESAINKLQRI 315 (439)
Q Consensus 239 ~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~ 315 (439)
. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|++++... ..|...++.+...
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 3 344554 5899999999999988542 223346789999999999999999999998653 3698888888654
Q ss_pred C-----------CccHHHHHHHhhcCCCHHhHHHHhcccccccc-------------cCCCchhHHHHHHhhCCceEEcc
Q 037205 316 L-----------YPSILEVLKISYDGLDNKEKNIFLGVACFFQV-------------RIGFNLEIGVSVLVDKSLIVISN 371 (439)
Q Consensus 316 ~-----------~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~-------------~~~~~~~~~l~~L~~~sLi~~~~ 371 (439)
. ...+..++..||+.|+++.|.||++||+||.+ .++..+...+..|+++|||....
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence 3 24689999999999999999999999999875 11123567899999999998764
Q ss_pred CC---eEEecHHHHHHHHHHHhhhc--------------------CCCCCeeeccChhhHHHHHhhCc
Q 037205 372 NN---KITMHDLLQELGRDIVSQES--------------------NDPGNHNWLWHHEDIYEVLTYNT 416 (439)
Q Consensus 372 ~~---~~~mHdlv~~~a~~i~~~e~--------------------~~~~~~~rl~~~~~~~~~l~~~~ 416 (439)
++ +|+||+++|+++++....+. ..++.+..+|.++.+.+++..+.
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~ 496 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKM 496 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred CCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCC
Confidence 32 69999999999998732110 12345566777777777776543
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-35 Score=317.14 Aligned_cols=271 Identities=17% Similarity=0.154 Sum_probs=198.3
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH--hH-------HH----------HHHHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI--SR-------YL----------LATKLISNL 174 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~--~~-------f~----------~~~~ll~~l 174 (439)
...|||+.++++|.++|... ++.++|+|+||||+||||||+++|++. .. |+ +...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34599999999999999742 358999999999999999999999753 22 32 233333322
Q ss_pred hc---C---CCCC--C-------cHHHHHHHh---ccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205 175 LK---D---ENAI--P-------GIDLNFRRL---SRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236 (439)
Q Consensus 175 ~~---~---~~~~--~-------~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 236 (439)
.. . .... . ....+++.| .++++||||||||+.++|+.+. +||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 11 1 0011 1 234555555 5799999999999999988762 6999999999999886
Q ss_pred hcCCCeEEEcC------CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcCC--CHHHHHHH
Q 037205 237 NWGVSKIYEME------ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYKR--EKEVWESA 308 (439)
Q Consensus 237 ~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~--~~~~w~~~ 308 (439)
.+.....|.|+ +|+.+||++||++.. ... ..++..++ |+|+||||+++|+.|+.+ +.++|+..
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 54333356666 899999999999984 322 12333343 999999999999999876 67888753
Q ss_pred HHHHhcCCCccHHHHHHHhhcCCCHHh-HHHHhcccccccc-------------cCC-CchhHHHHHHhhCCceEEcc-C
Q 037205 309 INKLQRILYPSILEVLKISYDGLDNKE-KNIFLGVACFFQV-------------RIG-FNLEIGVSVLVDKSLIVISN-N 372 (439)
Q Consensus 309 l~~l~~~~~~~i~~~l~~Sy~~L~~~~-k~~fl~la~f~~~-------------~~~-~~~~~~l~~L~~~sLi~~~~-~ 372 (439)
....+..+|.+||+.|++++ |.||++||+||.+ +++ ..+..+|++|+++|||+... .
T Consensus 351 -------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~ 423 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSS
T ss_pred -------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCC
Confidence 35779999999999999999 9999999999986 222 13678899999999999863 4
Q ss_pred CeEEecHHHHHHHHHHHhhhcCCCCCeeeccChhhHHHHH
Q 037205 373 NKITMHDLLQELGRDIVSQESNDPGNHNWLWHHEDIYEVL 412 (439)
Q Consensus 373 ~~~~mHdlv~~~a~~i~~~e~~~~~~~~rl~~~~~~~~~l 412 (439)
++|+||||+++++.. ....+..++++.++.+...++
T Consensus 424 ~rYrMHDLllELr~~----~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 424 STISIPSIYLELKVK----LENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp SEEBCCCHHHHHHHH----HSCCTTHHHHHHHHHHHHHHC
T ss_pred CEEEehHHHHHHhcC----CCcHHHHHHHHHHHHHhhCcC
Confidence 689999999885421 112345555555554444333
No 5
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=1.2e-27 Score=208.86 Aligned_cols=100 Identities=30% Similarity=0.405 Sum_probs=90.9
Q ss_pred cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHhccccccccC
Q 037205 4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYRS 83 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~~ 83 (439)
.|.||+.||++|++|++.+++.|+||||+|+|++||+|+|+||++|.+|+.+ .+.+++++||.||+++|+++||++.
T Consensus 76 ~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~- 152 (176)
T 3jrn_A 76 ASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG- 152 (176)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-
T ss_pred CChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-
Confidence 6899999999999999999999999999999999999999999999999987 5578999999999999999999994
Q ss_pred CcchhhHHHHHHHhhhhccccccc
Q 037205 84 IRPESELINEVVNHILKRLLEEVF 107 (439)
Q Consensus 84 ~~~e~~~i~~iv~~i~~~l~~~~~ 107 (439)
.. |+++|++||++|.++|+++++
T Consensus 153 ~~-e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 153 DD-DSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp SC-HHHHHHHHHHHHHTTCC----
T ss_pred CC-HHHHHHHHHHHHHHHhcCCCC
Confidence 34 999999999999999987764
No 6
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.93 E-value=7.4e-27 Score=207.02 Aligned_cols=99 Identities=29% Similarity=0.522 Sum_probs=92.0
Q ss_pred cccchHHHHHHHHhhhhc-CCCEEEEEeeecCccccccccccchhhHHHHHHHhhhchHHHHHHHHHHHHHhcccccccc
Q 037205 4 CSLLIGLKLVLFHLTQKE-HAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGLREAVGLSGFHYR 82 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~-~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL~~~~~~~g~~~~ 82 (439)
.|+||+.||++|++|+++ ++++||||||+|+|++||+|+|+||++|.+|+.++. .+++++||.||+++|+++||++.
T Consensus 103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecC
Confidence 689999999999999975 689999999999999999999999999999998874 46899999999999999999999
Q ss_pred CCcchhhHHHHHHHhhhhcccc
Q 037205 83 SIRPESELINEVVNHILKRLLE 104 (439)
Q Consensus 83 ~~~~e~~~i~~iv~~i~~~l~~ 104 (439)
....|+++|++||.+|.++|+.
T Consensus 181 ~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 181 KNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 8877899999999999998764
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=2.2e-15 Score=147.18 Aligned_cols=261 Identities=15% Similarity=0.148 Sum_probs=157.5
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH----------------HHHHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YL----------------LATKLISN 173 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~----------------~~~~ll~~ 173 (439)
..+..|+||+.+++.|.+.+..+ +++.|+|++|+|||||++++++.... |+ +...+...
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHH
Confidence 56678999999999999988742 68999999999999999999876321 11 11122222
Q ss_pred Hhc----------------CCCC--CCc----HHHHHHHhcc-CCceEEecCCCCHH--------H-HHHHhcCCCCCCC
Q 037205 174 LLK----------------DENA--IPG----IDLNFRRLSR-MKVLIFFYDVTCFS--------Q-LESLMGSLDWLTP 221 (439)
Q Consensus 174 l~~----------------~~~~--~~~----~~~l~~~l~~-~~~LlVlDdv~~~~--------~-~~~l~~~~~~~~~ 221 (439)
+.. .... ... ...+...... ++++|||||++... . +..+..... ..+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~ 163 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLP 163 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCT
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcC
Confidence 111 0000 112 2233333332 48999999996532 1 222221111 124
Q ss_pred CcEEEEEeCchHHHHhc-----------C-CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 222 VSRIILTTRNKQVLRNW-----------G-VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 222 gs~IiiTTR~~~v~~~~-----------~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
+.++|+|++........ + ....+.+.+|+.+|+.+++........... ..+.+..++..|+|+|++
T Consensus 164 ~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHHH
T ss_pred CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHH
Confidence 77899998876542211 1 134789999999999999987542222111 245788999999999999
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCC---CHHhHHHHhcccccccc------c----C-CCc-
Q 037205 290 LKVLGCFLYK-REKEVWESAINKLQRILYPSILEVLKISYDGL---DNKEKNIFLGVACFFQV------R----I-GFN- 353 (439)
Q Consensus 290 l~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L---~~~~k~~fl~la~f~~~------~----~-~~~- 353 (439)
+..++..+.. .+...+. ..+. +.+...+.-.+..+ ++..+.++..+|+=+.. . . +..
T Consensus 242 l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~g~~~~~~l~~~~~~~~~~~~~ 314 (350)
T 2qen_A 242 LVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPE 314 (350)
T ss_dssp HHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHhCCCCHHHHHHHHHHHhCCCCH
Confidence 9999876432 2332221 1111 01111111112222 67888888888871111 0 0 333
Q ss_pred --hhHHHHHHhhCCceEEccCCeEEe-cHHHHHHHH
Q 037205 354 --LEIGVSVLVDKSLIVISNNNKITM-HDLLQELGR 386 (439)
Q Consensus 354 --~~~~l~~L~~~sLi~~~~~~~~~m-Hdlv~~~a~ 386 (439)
...+++.|.+.+||... ++.|.+ |++++.+.+
T Consensus 315 ~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 315 PRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 24679999999999876 467765 678887753
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=7e-16 Score=151.00 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=157.2
Q ss_pred CCCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH---------------HHHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL---------------LATKLIS 172 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~---------------~~~~ll~ 172 (439)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++++++.... |+ ....+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHH
Confidence 566789999999999999 763 68999999999999999999876422 11 0111111
Q ss_pred HH-------------hcCC-----C-----------CCCcHHHHHHHhcc---CCceEEecCCCCHH-----HHHHHhcC
Q 037205 173 NL-------------LKDE-----N-----------AIPGIDLNFRRLSR---MKVLIFFYDVTCFS-----QLESLMGS 215 (439)
Q Consensus 173 ~l-------------~~~~-----~-----------~~~~~~~l~~~l~~---~~~LlVlDdv~~~~-----~~~~l~~~ 215 (439)
.+ .... . .......+.+.+.. ++++|||||++..+ ++..++..
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHH
Confidence 11 1100 0 01233344444432 48999999996532 11111111
Q ss_pred CCCCCCCcEEEEEeCchHHHHh-----------cCC-CeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh
Q 037205 216 LDWLTPVSRIILTTRNKQVLRN-----------WGV-SKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV 283 (439)
Q Consensus 216 ~~~~~~gs~IiiTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 283 (439)
+....++.++|+|++....... .+. ...+.+.+|+.+++.+++............. ...++..|
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t 239 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKI 239 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHh
Confidence 1111246789999997654321 111 3578999999999999998754211111211 17899999
Q ss_pred CCCcHHHHHHHHhhcC-CCHHHHHHHHHHHhcCCCccHHHHHH-Hhhc--CCCHHhHHHHhcccccccc----c------
Q 037205 284 QGVPLALKVLGCFLYK-REKEVWESAINKLQRILYPSILEVLK-ISYD--GLDNKEKNIFLGVACFFQV----R------ 349 (439)
Q Consensus 284 ~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~-~Sy~--~L~~~~k~~fl~la~f~~~----~------ 349 (439)
+|+|+++..++..+.. .+...|... +-......+...+. +.++ .|++..+.++..+|+-+ . +
T Consensus 240 ~G~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~-~~~~l~~~~~~~ 315 (357)
T 2fna_A 240 GGIPGWLTYFGFIYLDNKNLDFAINQ---TLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKCG-KWSDVKRALELE 315 (357)
T ss_dssp CSCHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccccchHHHHHH---HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 9999999999887642 333333221 11000011222222 1111 67888899999888832 3 1
Q ss_pred CC--Cc---hhHHHHHHhhCCceEEccCCeEE-ecHHHHHHH
Q 037205 350 IG--FN---LEIGVSVLVDKSLIVISNNNKIT-MHDLLQELG 385 (439)
Q Consensus 350 ~~--~~---~~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~a 385 (439)
.| .. ...+++.|.+.+||... ++.|+ -|++++++.
T Consensus 316 ~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 316 EGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 12 22 34679999999999886 46676 578988764
No 9
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=5.7e-15 Score=147.77 Aligned_cols=255 Identities=13% Similarity=0.084 Sum_probs=152.8
Q ss_pred CCCCCCcccccchHHHHHhhh-cc--CC--CCeeEEEE--ecCCCChhHHHHHHHHhHHhH------------HH-----
Q 037205 110 RDNKSQLVGVESRVEEIESLL-SV--ES--KDVYALGI--WGIGGIGKTTIARATFDKISR------------YL----- 165 (439)
Q Consensus 110 ~~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~------------f~----- 165 (439)
...+..|+||+.+++.|.+.+ .. .. ...+.+.| +|++|+||||||+.+++.... |+
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 355678999999999999988 42 11 23456666 999999999999999987642 11
Q ss_pred -----HHHHHHHHHhcCCC--CCC---cHHHHHHHhc--cCCceEEecCCCCH--------HHHHHHhcCCCCC---C--
Q 037205 166 -----LATKLISNLLKDEN--AIP---GIDLNFRRLS--RMKVLIFFYDVTCF--------SQLESLMGSLDWL---T-- 220 (439)
Q Consensus 166 -----~~~~ll~~l~~~~~--~~~---~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~---~-- 220 (439)
+...++..+..... ..+ ....+...+. +++++|||||++.. +.+..+...+... +
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 44555555533222 111 2344455554 57899999999653 3333333222111 2
Q ss_pred CCcEEEEEeCchHHHHhc---------CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhC------C
Q 037205 221 PVSRIILTTRNKQVLRNW---------GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ------G 285 (439)
Q Consensus 221 ~gs~IiiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~------G 285 (439)
....+|+||+...+...+ .....+.+++|+.+++.++|...+........-..+.+..+++.++ |
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence 344578888765532111 1123489999999999999976542111111122567889999999 9
Q ss_pred CcHHHHHHHHhh-c-----C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-c-------
Q 037205 286 VPLALKVLGCFL-Y-----K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-V------- 348 (439)
Q Consensus 286 lPLal~~~g~~L-~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-~------- 348 (439)
+|..+..+.... . + .+.+.+...+..... ...+.-++..||+..+.++..+|.++. +
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 997655544321 1 1 233444443333110 234455678899999999988887542 1
Q ss_pred --------cC----CC------chhHHHHHHhhCCceEEc
Q 037205 349 --------RI----GF------NLEIGVSVLVDKSLIVIS 370 (439)
Q Consensus 349 --------~~----~~------~~~~~l~~L~~~sLi~~~ 370 (439)
.+ +. ....+++.|.+.+||...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 332 LLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 00 11 123568899999999864
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=2.5e-12 Score=127.28 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=156.5
Q ss_pred CCCcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHH-----------hH---HH-----------
Q 037205 113 KSQLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKI-----------SR---YL----------- 165 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----------~~---f~----------- 165 (439)
+..|+||+.+++++...+.. .....+.+.|+|++|+||||||+.+++.. .. ++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 47899999999999988764 23446789999999999999999999875 21 11
Q ss_pred HHHHHHHHHhcCCC---CCC---cHHHHHHHhccCCceEEecCCCCHHH-------HHHHhcCCCCCCCCcEEEEEeCch
Q 037205 166 LATKLISNLLKDEN---AIP---GIDLNFRRLSRMKVLIFFYDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNK 232 (439)
Q Consensus 166 ~~~~ll~~l~~~~~---~~~---~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IiiTTR~~ 232 (439)
+...++..+.+... ... ....+...+...+.+|||||++.... +..+.... .+..+|+||+..
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 23344555533222 111 34556666766666999999975432 33443332 677889998865
Q ss_pred HH--------HHhcCCCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCcchHHHHHHHHHHhC---CCcH-HHHHHHHhh
Q 037205 233 QV--------LRNWGVSKIYEMEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYVQ---GVPL-ALKVLGCFL 297 (439)
Q Consensus 233 ~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~~L 297 (439)
.. ... ....+.+++++.++..++|...+. .....+ .+....+++.++ |.|. |+..+-...
T Consensus 175 ~~~~~l~~~l~sr--~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 175 NVRDYMEPRVLSS--LGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp TTTTTSCHHHHHT--CCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhc--CCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 21 122 223899999999999999998753 222222 455777888888 9887 444433332
Q ss_pred ------cCCCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-c-----------cCC---C---c
Q 037205 298 ------YKREKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-V-----------RIG---F---N 353 (439)
Q Consensus 298 ------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-~-----------~~~---~---~ 353 (439)
..-+.+.+..++.... ...+..+++.|++.++..+..++.... + ..| . .
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 1246777777776643 245667788899888888877776111 1 111 1 1
Q ss_pred hhHHHHHHhhCCceEEc
Q 037205 354 LEIGVSVLVDKSLIVIS 370 (439)
Q Consensus 354 ~~~~l~~L~~~sLi~~~ 370 (439)
...++..|.+++||...
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 23457778888888754
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=9.6e-13 Score=129.97 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=138.8
Q ss_pred CCCCCcccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISN 173 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~ 173 (439)
..+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.... |+ ....++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 55688999999999999988742 345678999999999999999999987631 11 11223333
Q ss_pred HhcCCC------CCC---cHHHHHHHhc--cCCceEEecCCCCHH------HHHHHhcCCCC-CCCCcEEEEEeCchHHH
Q 037205 174 LLKDEN------AIP---GIDLNFRRLS--RMKVLIFFYDVTCFS------QLESLMGSLDW-LTPVSRIILTTRNKQVL 235 (439)
Q Consensus 174 l~~~~~------~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IiiTTR~~~v~ 235 (439)
+...-. ... ....+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 332111 111 2334444444 348899999996532 23333322211 13355677888765432
Q ss_pred HhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhC---CCcHHH-HHHHHhhc-----C
Q 037205 236 RNWG-------VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQ---GVPLAL-KVLGCFLY-----K 299 (439)
Q Consensus 236 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~~g~~L~-----~ 299 (439)
..+. ....+.+++++.++..+++...+........-..+....+++.++ |.|..+ .++..... +
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 2211 125899999999999999987653111111122566777888887 999844 33332221 1
Q ss_pred ---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccc
Q 037205 300 ---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACF 345 (439)
Q Consensus 300 ---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f 345 (439)
-+.+.++.++.... ...+.-++..|++..+.++..++.+
T Consensus 257 ~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~ 298 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSI 298 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666555532 2356667788998888888877753
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=2.4e-12 Score=127.19 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=142.3
Q ss_pred CCCCCcccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHHhH----------H--H----------H
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKISR----------Y--L----------L 166 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------f--~----------~ 166 (439)
..+..|+||+.+++.+..++... ....+.+.|+|++|+||||||+.+++.... | + +
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 44578999999999999998542 345678999999999999999999987632 1 1 4
Q ss_pred HHHHHHHHhcCCCC--CC---cHHHHHHHhc--cCCceEEecCCCCHHH-------HHHHhcCCCCC--CCCcEEEEEeC
Q 037205 167 ATKLISNLLKDENA--IP---GIDLNFRRLS--RMKVLIFFYDVTCFSQ-------LESLMGSLDWL--TPVSRIILTTR 230 (439)
Q Consensus 167 ~~~ll~~l~~~~~~--~~---~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~IiiTTR 230 (439)
...++..+...... .. ....+...+. +++.+||||+++.... +..+....... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 45566665432221 11 2344444553 4578999999975432 23333222111 34567788887
Q ss_pred chHH--------HHhcCCCeEEEcCCCCHHHHHHHHHHhhh---cCCCCCcchHHHHHHHHHHhC---CCcH-HHHHHHH
Q 037205 231 NKQV--------LRNWGVSKIYEMEALEYHHALELFSRHAF---KRNHPDVGYEKLSSNVMKYVQ---GVPL-ALKVLGC 295 (439)
Q Consensus 231 ~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~ 295 (439)
.... ...+ ....+.+++++.++..+++...+. .....+ .+....+++.++ |.|. ++..+..
T Consensus 176 ~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6522 2221 124789999999999999988753 222222 345677888888 9994 3333332
Q ss_pred hhc-----C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhcccccccc
Q 037205 296 FLY-----K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQV 348 (439)
Q Consensus 296 ~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~ 348 (439)
... + -+.+.+..++.... ...+.-++..|++..+..++.++....+
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDG 305 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 221 1 35666666666542 2346667889999988888877754333
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=1.5e-11 Score=121.66 Aligned_cols=275 Identities=14% Similarity=0.124 Sum_probs=162.0
Q ss_pred CCCCCcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-------HH----------HHHH
Q 037205 111 DNKSQLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-------YL----------LATK 169 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------f~----------~~~~ 169 (439)
..+..++||+.+++.+...+.. .....+.+.|+|++|+||||||+.+++.... ++ +...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 4457899999999999998864 1222348999999999999999999887631 11 3344
Q ss_pred HHHHHhcCCC--CCC---cHHHHHHHhc--cCCceEEecCCCC--HHHHHHHhcCCCCCC----CCcEEEEEeCchHHHH
Q 037205 170 LISNLLKDEN--AIP---GIDLNFRRLS--RMKVLIFFYDVTC--FSQLESLMGSLDWLT----PVSRIILTTRNKQVLR 236 (439)
Q Consensus 170 ll~~l~~~~~--~~~---~~~~l~~~l~--~~~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v~~ 236 (439)
++..+..... ... ..+.+...+. +++.+||||+++. ...+..|...+.... .+..+|+||++.....
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 4444432211 111 2233333443 4678999999965 344555554443221 3667888887664332
Q ss_pred hcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHh---------CCCcHHHHHHHHh-hc-
Q 037205 237 NWG-------VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYV---------QGVPLALKVLGCF-LY- 298 (439)
Q Consensus 237 ~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~g~~-L~- 298 (439)
... ....+.+++++.++..+++...+........-..+....+++.+ +|.|..+..+... ..
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 221 12368999999999999998775321111112256788899999 7887654433322 11
Q ss_pred ----C---CCHHHHHHHHHHHhcCCCccHHHHHHHhhcCCCHHhHHHHhccccccc-----c---------------cCC
Q 037205 299 ----K---REKEVWESAINKLQRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQ-----V---------------RIG 351 (439)
Q Consensus 299 ----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~-----~---------------~~~ 351 (439)
+ -+.+....+..... ...+ .-.+..|++..+.++..++.+.. . ..+
T Consensus 254 a~~~~~~~i~~~~v~~~~~~~~---~~~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (389)
T 1fnn_A 254 AQQNGRKHIAPEDVRKSSKEVL---FGIS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG 326 (389)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHS---CCCC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCcCHHHHHHHHHHHh---hhhH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC
Confidence 1 23344444443332 1112 22345577777777776765431 1 001
Q ss_pred ------CchhHHHHHHhhCCceEEccC-------Ce-------EEecHHHHHHHHHHHhhh
Q 037205 352 ------FNLEIGVSVLVDKSLIVISNN-------NK-------ITMHDLLQELGRDIVSQE 392 (439)
Q Consensus 352 ------~~~~~~l~~L~~~sLi~~~~~-------~~-------~~mHdlv~~~a~~i~~~e 392 (439)
.....+++.|.++++|..... |+ +..|++++.+...+..+|
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 327 ERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 112357899999999987432 22 225577776666665544
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=1.9e-11 Score=112.09 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=116.4
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HH---------HHHHHHHHHhcC----
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YL---------LATKLISNLLKD---- 177 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~---------~~~~ll~~l~~~---- 177 (439)
...++||+..++.+...+..+. ..+.+.|+|++|+||||||+.+++.... .. ....+.......
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 3569999999999999987432 2357899999999999999999877542 00 000110000000
Q ss_pred CC-CCCcHHHHHHHh--------ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchHHH-H-hcCCCeEE
Q 037205 178 EN-AIPGIDLNFRRL--------SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQVL-R-NWGVSKIY 244 (439)
Q Consensus 178 ~~-~~~~~~~l~~~l--------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~-~~~~~~~~ 244 (439)
.. .......+...+ .+++.+||+||++. ...++.+...+.....+..+|+||+..... . .......+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i 180 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 180 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhc
Confidence 00 001122222222 23578999999964 445555555444345677888888765321 1 11234689
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL 297 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 297 (439)
++++++.++..+++...+....... ..+....+++.|+|+|..+..+...+
T Consensus 181 ~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 181 HLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988775433221 24668899999999999988776543
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.22 E-value=6e-11 Score=107.38 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=109.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCc----HH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPG----ID 185 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~----~~ 185 (439)
...++|++..++.+.+++... ..+.+.|+|++|+|||+||+.+++.... +. ..... ....... ..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWR------DNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG------GGEEEEETTCTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccc------cceEEeccccccChHHHHH
Confidence 357999999999999998743 2334899999999999999999876521 00 00000 0001111 11
Q ss_pred HHHHHh------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHHH-Hh-cCCCeEEEcCCCCHHHHH
Q 037205 186 LNFRRL------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHAL 255 (439)
Q Consensus 186 ~l~~~l------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~ 255 (439)
.+.... ..++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ......+.+++++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 88 KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 222222 256789999999653 33444443333334677888888765321 11 122358899999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHH
Q 037205 256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC 295 (439)
Q Consensus 256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 295 (439)
+++...+...... -..+....+++.++|.|..+..+..
T Consensus 168 ~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 168 KRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9998876432222 1246678889999999996554433
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=4.9e-10 Score=107.86 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=109.1
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHH----HH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDL----NF 188 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~----l~ 188 (439)
..++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+.+++.+.. ...-..+.. ...+...... +.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLG----RSYADGVLELNASDDRGIDVVRNQIK 94 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHG----GGHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcC----CcccCCEEEecCccccChHHHHHHHH
Confidence 56999999999999998743 3333889999999999999999887521 000000111 1111111111 22
Q ss_pred HHh-------ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchHH-HHh-cCCCeEEEcCCCCHHHHHHH
Q 037205 189 RRL-------SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQV-LRN-WGVSKIYEMEALEYHHALEL 257 (439)
Q Consensus 189 ~~l-------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~L 257 (439)
... .+++.++|+||++. ....+.|...+.....++++|+||+...- ... ......+++.+++.++..++
T Consensus 95 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 174 (323)
T 1sxj_B 95 HFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 174 (323)
T ss_dssp HHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred HHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHH
Confidence 222 34578999999975 33344444333333456788888876432 111 12345899999999999999
Q ss_pred HHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH-HHHHHHh
Q 037205 258 FSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA-LKVLGCF 296 (439)
Q Consensus 258 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g~~ 296 (439)
+...+...... -..+.+..+++.++|.|.. +..+...
T Consensus 175 l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 175 LLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 98876432221 1246678899999999954 5554433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=1.1e-09 Score=105.63 Aligned_cols=173 Identities=15% Similarity=0.122 Sum_probs=109.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCC---C-cHH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAI---P-GID 185 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~---~-~~~ 185 (439)
..+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+.. |. ..... ...+. + ...
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWR------HNFLELNASDERGINVIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH------HHEEEEETTCHHHHHTTHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCccc------CceEEeeccccCchHHHHH
Confidence 467999999999999988743 3344899999999999999999887531 10 00000 00000 0 111
Q ss_pred HHHHHh-----c-cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchHH-HHhc-CCCeEEEcCCCCHHHHH
Q 037205 186 LNFRRL-----S-RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALEYHHAL 255 (439)
Q Consensus 186 ~l~~~l-----~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~ 255 (439)
.+.... . +++.++|+|+++.. ...+.|...+.....++++|+||..... .... .....+.+++++.++..
T Consensus 96 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 96 KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 175 (327)
T ss_dssp HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence 222211 1 56789999999643 3445554444333467788888876532 1111 12347899999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHH
Q 037205 256 ELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC 295 (439)
Q Consensus 256 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 295 (439)
+++...+...... -..+....+++.++|.|..+..+..
T Consensus 176 ~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 176 KRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9998876433321 2256678899999999987554433
No 18
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=98.98 E-value=1e-10 Score=100.72 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=46.1
Q ss_pred cccchHHHHHHHHhhhhcCCCEEEEEeeecCccccccccccchhhHHHHH
Q 037205 4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSYVRNQTGSFGDSFSKLQ 53 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~vr~q~~~~~~~~~~~~ 53 (439)
.|.||+.||+++++|...+++.|+||||+|+|++||+|.|.|+++|....
T Consensus 87 ~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 87 KKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp TTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred cChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 48999999999999998888999999999999999999999999887543
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=2e-08 Score=96.70 Aligned_cols=246 Identities=16% Similarity=0.121 Sum_probs=143.0
Q ss_pred CCCCcccccchHHHHHhhhcc---CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHH
Q 037205 112 NKSQLVGVESRVEEIESLLSV---ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLN 187 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l 187 (439)
...+++|++..++.+...+.. .......+.|+|++|+|||+||+.+++.... |+ .-..........+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~---------~~~~~~~~~~~~l 80 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR---------VTSGPAIEKPGDL 80 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE---------EECTTTCCSHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE---------EEeccccCChHHH
Confidence 346799999999998888753 1223457889999999999999998876431 10 0011112223344
Q ss_pred HHHhcc---CCceEEecCCCCHH--HHHHHhcCCCCC------------------CCCcEEEEEeCchHHH-Hhc--CCC
Q 037205 188 FRRLSR---MKVLIFFYDVTCFS--QLESLMGSLDWL------------------TPVSRIILTTRNKQVL-RNW--GVS 241 (439)
Q Consensus 188 ~~~l~~---~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~gs~IiiTTR~~~v~-~~~--~~~ 241 (439)
...+.+ .+.+|+||+++... ....|...+... .++.++|.||...... ..+ ...
T Consensus 81 ~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~ 160 (324)
T 1hqc_A 81 AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG 160 (324)
T ss_dssp HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCS
T ss_pred HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhccc
Confidence 444443 67799999997532 223332211100 0235677666643221 111 123
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhhcC---------CCHHHHHHHHHHH
Q 037205 242 KIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFLYK---------REKEVWESAINKL 312 (439)
Q Consensus 242 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~---------~~~~~w~~~l~~l 312 (439)
..+.+++++.++..+++...+...... -..+....++++++|+|..+..+...+.. -+.+.....+..+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 588999999999999988877433322 22567889999999999988776655421 1233333333322
Q ss_pred hcCCCccHHHHHHHhhcCCCHHhHHHHhcccccccc----------cCCCch---hHHHHH-HhhCCceEEccCCeEEec
Q 037205 313 QRILYPSILEVLKISYDGLDNKEKNIFLGVACFFQV----------RIGFNL---EIGVSV-LVDKSLIVISNNNKITMH 378 (439)
Q Consensus 313 ~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~----------~~~~~~---~~~l~~-L~~~sLi~~~~~~~~~mH 378 (439)
..++..|++.++..+..+.....+ ..|... ...++. +++.+||.....| ..+-
T Consensus 239 ------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g-~~~~ 305 (324)
T 1hqc_A 239 ------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG-RVPT 305 (324)
T ss_dssp ------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTE-EEEC
T ss_pred ------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcc-ceec
Confidence 233456777777777665543322 122221 122333 8889999876444 3444
Q ss_pred HHH
Q 037205 379 DLL 381 (439)
Q Consensus 379 dlv 381 (439)
+..
T Consensus 306 ~~~ 308 (324)
T 1hqc_A 306 ELA 308 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.81 E-value=8.1e-08 Score=94.14 Aligned_cols=198 Identities=14% Similarity=0.091 Sum_probs=112.1
Q ss_pred hhhHHHHHHHhhhhcccccccCCCCCCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHH
Q 037205 87 ESELINEVVNHILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARA 156 (439)
Q Consensus 87 e~~~i~~iv~~i~~~l~~~~~~p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~ 156 (439)
+...++.+...+.....+ ..-.+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.
T Consensus 63 ~~~~~~~i~~~i~~~~~~------~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPP------VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CHHHHHHHHHHTBCCSCC------CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHH
T ss_pred ChHHHHHHHhhcccCCCC------CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHH
Confidence 556666666666544333 2336799999999999887642 123456789999999999999999
Q ss_pred HHhHHhH-HH--HHHHHHHHHhcCCCCC--CcHHHH-HHHhccCCceEEecCCCCH-------------HHHHHHhcCCC
Q 037205 157 TFDKISR-YL--LATKLISNLLKDENAI--PGIDLN-FRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLD 217 (439)
Q Consensus 157 v~~~~~~-f~--~~~~ll~~l~~~~~~~--~~~~~l-~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~ 217 (439)
+++.... |+ ... .+....... .....+ .......+.+|+||+++.. ..+..++..+.
T Consensus 137 ia~~~~~~~~~i~~~----~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 137 IASQSGATFFSISAS----SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp HHHHTTCEEEEEEGG----GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEehH----HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence 9876542 11 000 000000000 011111 1222346789999999432 11222222211
Q ss_pred ----CCCCCcEEEEEeCchHHHH-h--cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC-CcHH
Q 037205 218 ----WLTPVSRIILTTRNKQVLR-N--WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG-VPLA 289 (439)
Q Consensus 218 ----~~~~gs~IiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLa 289 (439)
....+..||.||....... . -.....+.++..+.++..+++...+....... ..+....+++.+.| .+-.
T Consensus 213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp C----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHHHHHHHHHTTTCCHHH
T ss_pred cccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHcCCCCHHH
Confidence 1123445666665432211 1 13345788999999999998887763322211 14567788888988 4555
Q ss_pred HHHHHHh
Q 037205 290 LKVLGCF 296 (439)
Q Consensus 290 l~~~g~~ 296 (439)
|..+...
T Consensus 291 l~~l~~~ 297 (357)
T 3d8b_A 291 MTQLCRE 297 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.80 E-value=6.5e-08 Score=92.69 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhcCCC-CCC-cHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLKDEN-AIP-GIDLNFR 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~~~~-~~~-~~~~l~~ 189 (439)
.+++|++..++.+.+.+..+ ..+.+.++|++|+|||++|+.+++.+.. |- .-...+..... ... ....+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWR---DNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHH---HHCEEEETTSTTCTTTSSHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCccc---CCeEEEeCccccChHHHHHHHHH
Confidence 56999999999999988743 3334889999999999999999887521 10 00000010111 111 2222222
Q ss_pred Hh------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEEEcCCCCHHHHHHHHH
Q 037205 190 RL------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFS 259 (439)
Q Consensus 190 ~l------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 259 (439)
.. .+++.++|+|+++.. ...+.|...+.....+.++|+||.... +... ......+++.+++.++..+++.
T Consensus 92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp HHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred HHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHH
Confidence 22 256789999999643 445666666655556778888876543 1111 1234589999999999999998
Q ss_pred HhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 260 RHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
..+...... -..+....+++.++|.+..+...
T Consensus 172 ~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 172 EICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 776433322 12456788889999999865443
No 22
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.78 E-value=1.6e-07 Score=92.22 Aligned_cols=179 Identities=14% Similarity=0.111 Sum_probs=111.1
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---H--------HHHHHHHHH----Hh--
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---Y--------LLATKLISN----LL-- 175 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f--------~~~~~ll~~----l~-- 175 (439)
..+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+++.... . .....+... +.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 3569999999999999886432 2347889999999999999999876531 0 001111100 00
Q ss_pred c-CC-CCCCcHHHHHHHhc-----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchHH-HHh-cCCCeEE
Q 037205 176 K-DE-NAIPGIDLNFRRLS-----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQV-LRN-WGVSKIY 244 (439)
Q Consensus 176 ~-~~-~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~~~~~~ 244 (439)
. .. ........+...+. +++.++|+||++. ....+.|...+.....+..+|++|.+..- ... ......+
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 173 (373)
T 1jr3_A 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 (373)
T ss_dssp ETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEe
Confidence 0 00 01123344444443 4568999999964 33445554444333456677777764431 111 1234688
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHH
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLG 294 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 294 (439)
++.+++.++..+++...+...... -..+.+..+++.++|.|..+..+.
T Consensus 174 ~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 174 HLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999998766332221 124567889999999999876554
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.75 E-value=3.8e-08 Score=93.06 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=102.0
Q ss_pred CCCCCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK 176 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~ 176 (439)
....+++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.+++.... |+ .. ..+..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~----~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG----SELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG----GGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh----HHHHH
Confidence 44577999999999998877431 134567899999999999999999877643 11 00 00000
Q ss_pred CCCCCC----cH-HHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCC--CCCCCcEEEEEeCchH
Q 037205 177 DENAIP----GI-DLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLD--WLTPVSRIILTTRNKQ 233 (439)
Q Consensus 177 ~~~~~~----~~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~gs~IiiTTR~~~ 233 (439)
. ... .. ..+.......+.+|+||+++.. ..+..++.... ....+..||.||....
T Consensus 90 ~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 90 K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 0 000 11 1122223346689999999643 11223322211 1234567778887543
Q ss_pred HHH-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC-CcHHHHHH
Q 037205 234 VLR-----NWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG-VPLALKVL 293 (439)
Q Consensus 234 v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~ 293 (439)
... .......+.++.++.++..+++...+....... ......++..+.| .|-.+..+
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHHHH
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHHHH
Confidence 322 112345789999999999999988764332211 1124567777777 45455443
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.70 E-value=1.5e-08 Score=92.87 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=96.3
Q ss_pred CCCCCccccc---chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCCC
Q 037205 111 DNKSQLVGVE---SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENAI 181 (439)
Q Consensus 111 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~~ 181 (439)
....+|+|.+ ..++.+..+... ...+.+.|+|++|+||||||+.+++.... |+....+ .. .
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~----~~---~- 94 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH----AS---I- 94 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG----GG---S-
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----HH---H-
Confidence 3446788743 445555555542 24577899999999999999998877642 1000000 00 0
Q ss_pred CcHHHHHHHhccCCceEEecCCCCHH--H--HHHHhcCCCCC-CCC-cEEEEEeCchH---------HHHhcCCCeEEEc
Q 037205 182 PGIDLNFRRLSRMKVLIFFYDVTCFS--Q--LESLMGSLDWL-TPV-SRIILTTRNKQ---------VLRNWGVSKIYEM 246 (439)
Q Consensus 182 ~~~~~l~~~l~~~~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~g-s~IiiTTR~~~---------v~~~~~~~~~~~l 246 (439)
.... .+.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+... +...+.....+++
T Consensus 95 -~~~~-~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l 171 (242)
T 3bos_A 95 -STAL-LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQL 171 (242)
T ss_dssp -CGGG-GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEEC
T ss_pred -HHHH-HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEe
Confidence 0000 1111 356789999995431 1 22222211100 112 24777776321 2222222368999
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHH
Q 037205 247 EALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGC 295 (439)
Q Consensus 247 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 295 (439)
++++.++..+++...+...... -..+....+++.++|.+-.+..+..
T Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 172 QPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999998876432221 1256678889999999877655433
No 25
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.69 E-value=1.3e-08 Score=89.54 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=40.6
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++||+..++.+.+.+.. ...+.+.|+|++|+|||+||+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999874 3345678999999999999999988763
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=2.4e-07 Score=89.79 Aligned_cols=248 Identities=16% Similarity=0.126 Sum_probs=139.6
Q ss_pred CCCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205 113 KSQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNF 188 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~ 188 (439)
..+++|++..++.+..++... ....+.|.|+|++|+|||+||+.+++.... |+. -..........+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---------~~~~~~~~~~~~~ 98 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKT---------TAAPMIEKSGDLA 98 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---------EEGGGCCSHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---------ecchhccchhHHH
Confidence 367999999999999988642 334556899999999999999998776532 110 0000111222333
Q ss_pred HHhc--cCCceEEecCCCCH--HHHHHHhcCCCCC------------------CCCcEEEEEeCchHHH-Hh-c-CCCeE
Q 037205 189 RRLS--RMKVLIFFYDVTCF--SQLESLMGSLDWL------------------TPVSRIILTTRNKQVL-RN-W-GVSKI 243 (439)
Q Consensus 189 ~~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~gs~IiiTTR~~~v~-~~-~-~~~~~ 243 (439)
..+. ....+|+||+++.. .....|...+... .++..+|.||...... .. . .....
T Consensus 99 ~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~ 178 (338)
T 3pfi_A 99 AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQ 178 (338)
T ss_dssp HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEE
Confidence 3332 36688999999643 2223332211110 1124566665543221 11 1 23478
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh------cC---CCHHHHHHHHHHHhc
Q 037205 244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL------YK---REKEVWESAINKLQR 314 (439)
Q Consensus 244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~---~~~~~w~~~l~~l~~ 314 (439)
+.+++++.++...++...+..... .-..+....+++.+.|.|-.+..+...+ .+ -+.+.....+..
T Consensus 179 i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~--- 253 (338)
T 3pfi_A 179 FRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS--- 253 (338)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH---
T ss_pred eeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH---
Confidence 999999999999999877643221 1225667888889999996655443332 11 123333322222
Q ss_pred CCCccHHHHHHHhhcCCCHHhHHHHhcccccccc---------cCCCc---hhHHHH-HHhhCCceEEccCCeEEecHHH
Q 037205 315 ILYPSILEVLKISYDGLDNKEKNIFLGVACFFQV---------RIGFN---LEIGVS-VLVDKSLIVISNNNKITMHDLL 381 (439)
Q Consensus 315 ~~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~---------~~~~~---~~~~l~-~L~~~sLi~~~~~~~~~mHdlv 381 (439)
+..+...++..++..+..++-...+ ..|.. ....++ .|++.++|.....|++.-.--+
T Consensus 254 ---------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~ 324 (338)
T 3pfi_A 254 ---------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSY 324 (338)
T ss_dssp ---------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred ---------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHH
Confidence 2333445665556666555544111 11221 122355 8999999988766665444443
Q ss_pred HH
Q 037205 382 QE 383 (439)
Q Consensus 382 ~~ 383 (439)
.-
T Consensus 325 ~~ 326 (338)
T 3pfi_A 325 SA 326 (338)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 27
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.66 E-value=3.4e-07 Score=85.98 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=103.5
Q ss_pred CCcccccchHHHHHh-------hhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcH
Q 037205 114 SQLVGVESRVEEIES-------LLSV-ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGI 184 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~ 184 (439)
..++|.+..++++.. .+.. .....+.+.|+|++|+|||+||+.+++.... |+.... ...+.+. ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~-~~~~~g~-~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS-PDKMIGF-SETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC-GGGCTTC-CHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC-HHHhcCC-chHHHH
Confidence 457888777666665 2221 2445778999999999999999999876432 110000 0000000 000011
Q ss_pred HHH----HHHhccCCceEEecCCCCH------------HHHHHHhcCCC---CCCCCcEEEEEeCchHHHHhc----CCC
Q 037205 185 DLN----FRRLSRMKVLIFFYDVTCF------------SQLESLMGSLD---WLTPVSRIILTTRNKQVLRNW----GVS 241 (439)
Q Consensus 185 ~~l----~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~~~---~~~~gs~IiiTTR~~~v~~~~----~~~ 241 (439)
..+ ......+..+|+||+++.. ..++.|...+. ..+....||.||......... ...
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~ 190 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS 190 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccc
Confidence 112 2222356789999998543 12333333222 123345577788877554431 124
Q ss_pred eEEEcCCCCH-HHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC------CcHHHHHHHHhhcCCCHHHHHHHHHHHhc
Q 037205 242 KIYEMEALEY-HHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG------VPLALKVLGCFLYKREKEVWESAINKLQR 314 (439)
Q Consensus 242 ~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G------lPLal~~~g~~L~~~~~~~w~~~l~~l~~ 314 (439)
..+.+++++. ++...++.... ... .+....+++.+.| ++-++..+-..........+..++..+..
T Consensus 191 ~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 191 TTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp EEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred eEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 6789999988 55555554421 111 4557788888887 33444444333333334455566655544
Q ss_pred C
Q 037205 315 I 315 (439)
Q Consensus 315 ~ 315 (439)
.
T Consensus 264 ~ 264 (272)
T 1d2n_A 264 E 264 (272)
T ss_dssp T
T ss_pred c
Confidence 3
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=2.7e-07 Score=94.91 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=100.6
Q ss_pred CCCcccccchHHHHHhhhccC---------------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH-----------
Q 037205 113 KSQLVGVESRVEEIESLLSVE---------------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL----------- 165 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~----------- 165 (439)
..+++|++..++.+.+++... ....+.+.|+|++|+||||+|+.+++.... ++
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~ 117 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT 117 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHH
Confidence 367999999999999998641 013478999999999999999999887642 11
Q ss_pred HHHHHHHHHhcCCCCCC-cHHHHHH--HhccCCceEEecCCCCH--------HHHHHHhcCCCCCCCCcEEEEEeCchH-
Q 037205 166 LATKLISNLLKDENAIP-GIDLNFR--RLSRMKVLIFFYDVTCF--------SQLESLMGSLDWLTPVSRIILTTRNKQ- 233 (439)
Q Consensus 166 ~~~~ll~~l~~~~~~~~-~~~~l~~--~l~~~~~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~IiiTTR~~~- 233 (439)
.....+....... ... ....... ....++.+|++|+++.. ..+..+... .+..||+++.+..
T Consensus 118 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~~iIli~~~~~~ 191 (516)
T 1sxj_A 118 LLNAGVKNALDNM-SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TSTPLILICNERNL 191 (516)
T ss_dssp HHHHTGGGGTTBC-CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSSCEEEEESCTTS
T ss_pred HHHHHHHHHhccc-cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCCCEEEEEcCCCC
Confidence 1111111111100 000 0000000 12356789999999542 223333322 2334665554322
Q ss_pred --HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHH
Q 037205 234 --VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVL 293 (439)
Q Consensus 234 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 293 (439)
+.........+.+++++.++..+.+...+.......+ .+....|++.++|.+- ++..+
T Consensus 192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 2222234567899999999999998877644332111 3447788899999554 44444
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.65 E-value=3.1e-07 Score=85.42 Aligned_cols=177 Identities=15% Similarity=0.175 Sum_probs=99.2
Q ss_pred CCCCCcccccchHHHHHhhhcc---C-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC-
Q 037205 111 DNKSQLVGVESRVEEIESLLSV---E-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE- 178 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~- 178 (439)
..-.+++|.+..++.+.+++.. . ....+.+.|+|++|+|||+||+.+++.... |+ .+....
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-------~~~~~~~ 75 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL-------AMAGAEF 75 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE-------EEETTTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------EechHHH
Confidence 3446789999888888776531 1 123456889999999999999999886542 11 000000
Q ss_pred -CCCC------cHHHHHHHhccCCceEEecCCCCH-----------------HHHHHHhcCCCC--CCCCcEEEEEeCch
Q 037205 179 -NAIP------GIDLNFRRLSRMKVLIFFYDVTCF-----------------SQLESLMGSLDW--LTPVSRIILTTRNK 232 (439)
Q Consensus 179 -~~~~------~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~ 232 (439)
.... ....+.......+.+|+||+++.. ..+..++..+.. ...+..||.||...
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence 0000 111222222345789999999754 112233322211 12345666777654
Q ss_pred HHHHh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205 233 QVLRN-W----GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC 295 (439)
Q Consensus 233 ~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 295 (439)
..... . .....+.++.++.++-.+++...+..... ..........+++.+.|.+- .|..+..
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 32211 1 23467889999999999999887643322 21222235778888888754 4544433
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=7.2e-07 Score=86.72 Aligned_cols=174 Identities=13% Similarity=0.154 Sum_probs=103.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHHH----
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDLN---- 187 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~l---- 187 (439)
...++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++.+.. ....-..+.. ...+......+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYG---PDLMKSRILELNASDERGISIVREKV 110 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHH---HHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCC---CcccccceEEEccccccchHHHHHHH
Confidence 4679999999999999987432 233889999999999999999887531 0000000000 00011111111
Q ss_pred HHHh----------------ccCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcC
Q 037205 188 FRRL----------------SRMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEME 247 (439)
Q Consensus 188 ~~~l----------------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~ 247 (439)
.... ....-+|++|+++.. .....|...+.......++|++|.... +.... .....+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 1110 124458999998643 333344333322334567777775442 11111 123478999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 248 ALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 248 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
+++.++....+...+....... ..+....+++.++|.|..+..+
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999888764332221 2567889999999999875443
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.64 E-value=4.7e-07 Score=87.35 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=103.1
Q ss_pred CCCCCcccccchHHHHHhhhc----------cCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 111 DNKSQLVGVESRVEEIESLLS----------VESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
..-.+++|.+..++.|.+.+. ......+-|.|+|++|+|||+||+.+++.... |+ ....+.....+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 94 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 94 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGG
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccch
Confidence 334679999999999988772 11222467899999999999999999887543 21 111111110000
Q ss_pred CCCCCcHHH-HHHHhccCCceEEecCCCCHH-------------HHHHHhc---CCCCCCCCcEEEEEeCchHH-----H
Q 037205 178 ENAIPGIDL-NFRRLSRMKVLIFFYDVTCFS-------------QLESLMG---SLDWLTPVSRIILTTRNKQV-----L 235 (439)
Q Consensus 178 ~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~---~~~~~~~gs~IiiTTR~~~v-----~ 235 (439)
. ...... +...-...+.+|+||+++... ....++. .......+..||.||..+.. .
T Consensus 95 ~--~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~ 172 (322)
T 3eie_A 95 S--EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172 (322)
T ss_dssp H--HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHH
T ss_pred H--HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHH
Confidence 0 001111 122223466899999996321 1222222 11122345566667765432 2
Q ss_pred HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHHHH
Q 037205 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVLGC 295 (439)
Q Consensus 236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~ 295 (439)
. .....+.++..+.++-.+++..++....... .......+++.+.|. +-.|..+..
T Consensus 173 ~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 173 R--RFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp H--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred c--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 2456788999999999999988774332211 244567788888774 444554443
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.60 E-value=2.9e-07 Score=92.78 Aligned_cols=175 Identities=11% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCCCCcc-cccchH--HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HH----HHHHHHHHHh
Q 037205 111 DNKSQLV-GVESRV--EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--------YL----LATKLISNLL 175 (439)
Q Consensus 111 ~~~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~----~~~~ll~~l~ 175 (439)
....+|| |..... ..+......... ...+.|+|++|+||||||+.+++.... ++ +...+...+.
T Consensus 102 ~tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~ 180 (440)
T 2z4s_A 102 YTFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMK 180 (440)
T ss_dssp CSGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred CChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH
Confidence 3445666 654433 333333332222 667899999999999999999987642 11 2223333332
Q ss_pred cCCCCCCcHHHHHHHhccCCceEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCC
Q 037205 176 KDENAIPGIDLNFRRLSRMKVLIFFYDVTCFS----QLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVS 241 (439)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~ 241 (439)
.. ....+...+..+.-+|+|||++... ..+.+...+.. ...|..||+||.+. .+...+...
T Consensus 181 ~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g 255 (440)
T 2z4s_A 181 EG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG 255 (440)
T ss_dssp TT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS
T ss_pred cc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC
Confidence 21 2233444444467899999995321 22223222110 13567888888763 223333334
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 242 KIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 242 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
..+.+++++.++-.+++.+.+....... ..+....++..+.|.+-.+.-+
T Consensus 256 ~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 256 LVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp BCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHH
Confidence 5788999999999999988764322111 1345677888999988765433
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.55 E-value=1.1e-06 Score=83.58 Aligned_cols=178 Identities=18% Similarity=0.172 Sum_probs=100.4
Q ss_pred CCCCCcccccchHHHHHhhhccC----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN 179 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~ 179 (439)
..-.+++|.+..++.+.+.+... ....+.+.|+|++|+||||||+.+++.... |+... ...+....
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~--~~~l~~~~- 94 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS--AASLTSKY- 94 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE--STTTSSSS-
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee--HHHHhhcc-
Confidence 34467999999999998876320 123467899999999999999999876542 11000 00000000
Q ss_pred CCCc---HH-HHHHHhccCCceEEecCCCCH-------------HHHHHHh---cCCCC--CCCCcEEEEEeCchH----
Q 037205 180 AIPG---ID-LNFRRLSRMKVLIFFYDVTCF-------------SQLESLM---GSLDW--LTPVSRIILTTRNKQ---- 233 (439)
Q Consensus 180 ~~~~---~~-~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~---~~~~~--~~~gs~IiiTTR~~~---- 233 (439)
.-.. .. .+.......+.+|+||+++.. .....++ ..... .+.+..||.||..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 0001 11 112222346789999999542 1111122 11111 123455666776542
Q ss_pred -HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205 234 -VLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC 295 (439)
Q Consensus 234 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 295 (439)
+... ....+.++..+.++-..++...+....... .......+++.+.|.+- ++..+..
T Consensus 175 ~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 175 AALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2332 346778888888888888877663322211 24567788899999876 5655543
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.53 E-value=7.8e-07 Score=85.75 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=96.1
Q ss_pred CCCCCcc-cccc--hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HH----HHHHHHHHHhcC
Q 037205 111 DNKSQLV-GVES--RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR------YL----LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~----~~~~ll~~l~~~ 177 (439)
....+|| |... ....+...+.........+.|+|++|+||||||+.+++.... ++ +...+...+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG 87 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC
Confidence 3345566 5433 233444444433224567889999999999999999987742 11 222222222211
Q ss_pred CCCCCcHHHHHHHhccCCceEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCch---------HHHHhcCCCeE
Q 037205 178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCFS----QLESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKI 243 (439)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~ 243 (439)
....+...+. +..+|+||+++... ..+.+...+.. ...|..||+||.+. .+...+.....
T Consensus 88 -----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 -----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp -----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred -----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 1222233332 46799999995432 12222221110 12456788887633 22223333467
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 244 YEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 244 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
+++++ +.++..+++...+....... ..+....+++.+ |.+-.+
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHHHH
Confidence 89999 99999999988774333222 256677888888 776543
No 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.5e-07 Score=86.88 Aligned_cols=145 Identities=12% Similarity=0.029 Sum_probs=91.5
Q ss_pred CcccccchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------H------------HHHHH
Q 037205 115 QLVGVESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR-----------Y------------LLATK 169 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f------------~~~~~ 169 (439)
.+.||+.++++|...|.. .....+.+.|+|++|+|||++++.+++.+.. + .+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 389999999999988764 3456778899999999999999999998852 1 15566
Q ss_pred HHHHHhcCCCCC-CcHHHHHHH---h---ccCCceEEecCCCCHH---HHHHHhcCCCCCCCCc--EEEEEeCch---H-
Q 037205 170 LISNLLKDENAI-PGIDLNFRR---L---SRMKVLIFFYDVTCFS---QLESLMGSLDWLTPVS--RIILTTRNK---Q- 233 (439)
Q Consensus 170 ll~~l~~~~~~~-~~~~~l~~~---l---~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs--~IiiTTR~~---~- 233 (439)
++.++.+..... .....+.+. + .+++++++||+++... .+..+..... ..++ .||.++... .
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCcccchh
Confidence 777775543211 123333332 2 3467899999997642 2333322100 1222 233334322 1
Q ss_pred H-----HHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 234 V-----LRNWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 234 v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
. ...++ ...+.+++++.+|-.+++..++
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 12221 2578999999999999998766
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.50 E-value=7.7e-07 Score=89.76 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=105.4
Q ss_pred CCCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHH-hH-HH--HHHHHHHHHhc
Q 037205 111 DNKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKI-SR-YL--LATKLISNLLK 176 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~-f~--~~~~ll~~l~~ 176 (439)
..-.+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++.. .. |+ ....+.....+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g 210 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 210 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--------
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcc
Confidence 3446799999999988876621 11234688999999999999999999876 22 21 00111111111
Q ss_pred CCCCCCcHHHHHHHh-ccCCceEEecCCCCH-------------HHHHHHhcCCCCC---CCCcEEEEEeCchHHHHh--
Q 037205 177 DENAIPGIDLNFRRL-SRMKVLIFFYDVTCF-------------SQLESLMGSLDWL---TPVSRIILTTRNKQVLRN-- 237 (439)
Q Consensus 177 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~~gs~IiiTTR~~~v~~~-- 237 (439)
. .......+.... ...+.+|+||+++.. .....++..+... ..+..||.||..+.....
T Consensus 211 ~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al 288 (444)
T 2zan_A 211 E--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 288 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHH
T ss_pred h--HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHH
Confidence 1 111223333322 356789999999754 1234455544332 345666767765422111
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHHHH
Q 037205 238 -WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVLGC 295 (439)
Q Consensus 238 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~ 295 (439)
-.....+.++..+.++-..+|..++....... .......+++.+.|. +-.|..+..
T Consensus 289 ~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 289 RRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 13446788999999999998888763322111 234567888888885 434554443
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.49 E-value=1.5e-06 Score=85.98 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=99.4
Q ss_pred CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
.-.+++|.+..++.|...+.. .....+.|.|+|.+|+|||+||+.+++.... |+ ....+.....+.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~- 191 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE- 191 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccch-
Confidence 346799999999999987721 1122467899999999999999999877543 11 000000000000
Q ss_pred CCCCcHHHHHH-HhccCCceEEecCCCCH-------------HHHHHHhcCC----CCCCCCcEEEEEeCchHHHHh---
Q 037205 179 NAIPGIDLNFR-RLSRMKVLIFFYDVTCF-------------SQLESLMGSL----DWLTPVSRIILTTRNKQVLRN--- 237 (439)
Q Consensus 179 ~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~----~~~~~gs~IiiTTR~~~v~~~--- 237 (439)
.......+.. .-...+.+|+||+++.. .....++..+ ........||.||.....+..
T Consensus 192 -~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~ 270 (389)
T 3vfd_A 192 -GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVL 270 (389)
T ss_dssp -CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHH
T ss_pred -HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHH
Confidence 0001111222 22345679999999643 1111222111 111223455656654322111
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH-HHHHHHH
Q 037205 238 WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL-ALKVLGC 295 (439)
Q Consensus 238 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 295 (439)
-.....+.++..+.++-.+++...+....... ..+....+++.+.|..- +|..+..
T Consensus 271 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 271 RRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 12345788999999999999987764332222 24567788899988654 5655544
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.49 E-value=7.9e-07 Score=87.02 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=101.7
Q ss_pred CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
.-.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++.... |+ ....+.....+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g-- 126 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG-- 126 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcc--
Confidence 346799999999999887621 1122356889999999999999999987654 22 11111111000
Q ss_pred CCCC-cHHHH-HHHhccCCceEEecCCCCHH-------------HHHHHhcCC---CCCCCCcEEEEEeCchH-----HH
Q 037205 179 NAIP-GIDLN-FRRLSRMKVLIFFYDVTCFS-------------QLESLMGSL---DWLTPVSRIILTTRNKQ-----VL 235 (439)
Q Consensus 179 ~~~~-~~~~l-~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~gs~IiiTTR~~~-----v~ 235 (439)
... ....+ .......+.+|+||+++... ....++..+ .....+..||.||..+. +.
T Consensus 127 -~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 127 -ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp --CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred -hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence 000 11222 22223467899999996431 122222221 11123455666776442 22
Q ss_pred HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHHHH
Q 037205 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVLGC 295 (439)
Q Consensus 236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~ 295 (439)
. .....+.++..+.++-.+++..++....... .......+++.+.|. +-.|..+..
T Consensus 206 r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 206 R--RFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp H--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred c--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 3457788999999999999988764322111 144567888888884 444555443
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.47 E-value=1.9e-06 Score=83.07 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhcCCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLKDEN 179 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~~~~ 179 (439)
.-.+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++.... |+... ...+.....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~--~~~l~~~~~ 87 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS--SSDLVSKWL 87 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE--CCSSCCSSC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE--hHHHHhhhh
Confidence 346788999888888875521 1123467899999999999999999987621 21000 000000000
Q ss_pred CCC--cHHHHHH-HhccCCceEEecCCCCH-------------HHHHHHhcCCC---CCCCCcEEEEEeCchH-----HH
Q 037205 180 AIP--GIDLNFR-RLSRMKVLIFFYDVTCF-------------SQLESLMGSLD---WLTPVSRIILTTRNKQ-----VL 235 (439)
Q Consensus 180 ~~~--~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~---~~~~gs~IiiTTR~~~-----v~ 235 (439)
... ....+.. .-..++.+|+||+++.. .....++..+. ....+..||.||..+. +.
T Consensus 88 g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~ 167 (322)
T 1xwi_A 88 GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 167 (322)
T ss_dssp CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHH
Confidence 000 1122222 22356789999999754 11222222211 1123455565665432 22
Q ss_pred HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc-HHHHHHHH
Q 037205 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP-LALKVLGC 295 (439)
Q Consensus 236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~ 295 (439)
. .....+.++..+.++-.+++..+........ .......+++.+.|.. -.|..+..
T Consensus 168 r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 168 R--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp H--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred h--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 3456788999999999999987763322111 2455778888888874 34555544
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.45 E-value=1.3e-06 Score=83.32 Aligned_cols=173 Identities=14% Similarity=0.210 Sum_probs=100.2
Q ss_pred CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
.-.+++|.+..++.|.+.+.. +-...+.|.|+|++|+|||+||+.+++.... |+ ....+.....+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~ 92 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 92 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCc
Confidence 345689999988888877642 1234567899999999999999999987654 22 222333333222
Q ss_pred CCCCCcHHHHHHHhccCCceEEecCCCCHHH----------------HHHHhcCCCC--CCCCcEEEEEeCchHHHHh--
Q 037205 178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCFSQ----------------LESLMGSLDW--LTPVSRIILTTRNKQVLRN-- 237 (439)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~-- 237 (439)
.. ......+.......+.+|+||+++.... ...++..+.. ...+..||.||..+.....
T Consensus 93 ~~-~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al 171 (301)
T 3cf0_A 93 SE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 171 (301)
T ss_dssp CT-THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGG
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHH
Confidence 11 0112222333345678999999974211 1222222111 1234567777765533211
Q ss_pred c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-CcchHHHHHHHHHHhCCCcHH
Q 037205 238 W---GVSKIYEMEALEYHHALELFSRHAFKRNHP-DVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 238 ~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLa 289 (439)
. .....+.++.++.++-.+++....-..... ... ...++..+.|.|-+
T Consensus 172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred hcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 1 244678999999999888887766332211 111 23455667777654
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.44 E-value=1.2e-06 Score=88.28 Aligned_cols=165 Identities=15% Similarity=0.219 Sum_probs=97.7
Q ss_pred CCCcccccchH---HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHHHH
Q 037205 113 KSQLVGVESRV---EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDLNF 188 (439)
Q Consensus 113 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~l~ 188 (439)
...+||.+..+ ..+...+.. ...+.+.|+|++|+||||||+.+++.... |+ .-.........++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----------~l~a~~~~~~~ir 92 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANADVE----------RISAVTSGVKEIR 92 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----------EEETTTCCHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----------EEEeccCCHHHHH
Confidence 46799998887 677777763 34578899999999999999999877542 11 0000000111111
Q ss_pred H--------HhccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEE-EEeCchHH---HHhcCCCeEEEcCCCCHHHH
Q 037205 189 R--------RLSRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRII-LTTRNKQV---LRNWGVSKIYEMEALEYHHA 254 (439)
Q Consensus 189 ~--------~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Ii-iTTR~~~v---~~~~~~~~~~~l~~L~~~ea 254 (439)
. ...+++.+|+||+++... +.+.|+..+.. ....+| .||.+... .........+.+.+++.++.
T Consensus 93 ~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi 170 (447)
T 3pvs_A 93 EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170 (447)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHH
Confidence 1 123567899999997543 33344433331 123344 35555421 11122345889999999999
Q ss_pred HHHHHHhhhcCC-----CCCcchHHHHHHHHHHhCCCcHHHH
Q 037205 255 LELFSRHAFKRN-----HPDVGYEKLSSNVMKYVQGVPLALK 291 (439)
Q Consensus 255 ~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~ 291 (439)
.+++.+.+-... ....-..+....+++.++|.+-.+.
T Consensus 171 ~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 171 EQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 999887764311 1111235667788888888877554
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.43 E-value=1.9e-06 Score=84.31 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=98.6
Q ss_pred CCCcccccchHHHHHh---hhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH---HH----------------HHHHH
Q 037205 113 KSQLVGVESRVEEIES---LLSVESKDVYALGIWGIGGIGKTTIARATFDKISR---YL----------------LATKL 170 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~----------------~~~~l 170 (439)
...|+|++..++.+.. .+..+....+.+.|+|++|+|||+||+.+++.... |+ ...+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA 122 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHH
Confidence 5679999988776544 33333323468899999999999999999987642 10 11111
Q ss_pred HHHHhc---------------------CCC-------C-C-CcHHHHHHHh---------ccC----CceEEecCCCCH-
Q 037205 171 ISNLLK---------------------DEN-------A-I-PGIDLNFRRL---------SRM----KVLIFFYDVTCF- 206 (439)
Q Consensus 171 l~~l~~---------------------~~~-------~-~-~~~~~l~~~l---------~~~----~~LlVlDdv~~~- 206 (439)
+....+ ... . . .....++..+ .++ +.+|+||+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~ 202 (368)
T 3uk6_A 123 FRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD 202 (368)
T ss_dssp HHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB
T ss_pred HHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC
Confidence 111100 000 0 0 0011122111 122 359999999653
Q ss_pred -HHHHHHhcCCCCCCCCcEEEEEeCc-----------------hHHHHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC
Q 037205 207 -SQLESLMGSLDWLTPVSRIILTTRN-----------------KQVLRNWGVSKIYEMEALEYHHALELFSRHAFKRNHP 268 (439)
Q Consensus 207 -~~~~~l~~~~~~~~~gs~IiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 268 (439)
+....|...+...... .++++|.. +.+... ...+.+++++.++..+++...+......
T Consensus 203 ~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 203 IESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp HHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3344444444332223 34444431 222222 3457999999999999998877443322
Q ss_pred CcchHHHHHHHHHHhC-CCcHHHHHH
Q 037205 269 DVGYEKLSSNVMKYVQ-GVPLALKVL 293 (439)
Q Consensus 269 ~~~~~~~~~~i~~~~~-GlPLal~~~ 293 (439)
-..+....+++.+. |.|-.+..+
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22566788899997 887765443
No 43
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=2.3e-06 Score=83.30 Aligned_cols=177 Identities=12% Similarity=0.077 Sum_probs=101.2
Q ss_pred CCcccccchHHHHHhhh-ccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHH------HHH------
Q 037205 114 SQLVGVESRVEEIESLL-SVESKDVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLI------SNL------ 174 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll------~~l------ 174 (439)
.+++|.+..++.+.+.+ ..+. ... +.|+|++|+||||+|+.++..+.. ++....+. ..+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 56899999999999988 5332 223 899999999999999998875311 11000000 000
Q ss_pred -----hcCCCCCCc---HH-HHHHHh--------------ccCCceEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEe
Q 037205 175 -----LKDENAIPG---ID-LNFRRL--------------SRMKVLIFFYDVTCFS--QLESLMGSLDWLTPVSRIILTT 229 (439)
Q Consensus 175 -----~~~~~~~~~---~~-~l~~~l--------------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT 229 (439)
......... .. .+.... ..++-++|||++...+ ..+.+...+.....+..+|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t 171 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC 171 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 000000001 11 111111 2255699999997532 2333333322223567788777
Q ss_pred CchH-HHHh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcch-HHHHHHHHHHhCCCcHHHHHHH
Q 037205 230 RNKQ-VLRN-WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGY-EKLSSNVMKYVQGVPLALKVLG 294 (439)
Q Consensus 230 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~g 294 (439)
.+.. +... ......+++++++.++..+.+...+...... -. .+.+..+++.++|.+-.+..+.
T Consensus 172 ~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 172 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 6532 2111 1234789999999999999998876432211 11 3557788899999987655443
No 44
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.37 E-value=2.1e-06 Score=81.96 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=85.6
Q ss_pred CcccccchHHHHHhhhcc-------------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH--------HHHHHHHHHH
Q 037205 115 QLVGVESRVEEIESLLSV-------------ESKDVYALGIWGIGGIGKTTIARATFDKISR--------YLLATKLISN 173 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------f~~~~~ll~~ 173 (439)
.++|.+..++.|.+++.. .......+.|+|++|+|||+||+.+++.+.. |+... ...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--~~~ 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT--RDD 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC--GGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc--HHH
Confidence 378888888887765531 1234557899999999999999998877642 00000 000
Q ss_pred HhcCCCCCC-cHHHHHHHhc-cCCceEEecCCC-----------CHHHHHHHhcCCCCCCCCcEEEEEeCchH-------
Q 037205 174 LLKDENAIP-GIDLNFRRLS-RMKVLIFFYDVT-----------CFSQLESLMGSLDWLTPVSRIILTTRNKQ------- 233 (439)
Q Consensus 174 l~~~~~~~~-~~~~l~~~l~-~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~------- 233 (439)
+... -.. ....+...+. .+..+|+||+++ .......|...+.....+..+|.||....
T Consensus 110 l~~~--~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~ 187 (309)
T 3syl_A 110 LVGQ--YIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187 (309)
T ss_dssp TCCS--STTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHH
T ss_pred hhhh--cccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhh
Confidence 0000 000 1112222221 245699999997 33444555544433345677888876432
Q ss_pred ---HHHhcCCCeEEEcCCCCHHHHHHHHHHhhhc
Q 037205 234 ---VLRNWGVSKIYEMEALEYHHALELFSRHAFK 264 (439)
Q Consensus 234 ---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 264 (439)
+... ....+.+++++.++-.+++...+..
T Consensus 188 ~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 188 NPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp STTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 2222 2368899999999999999887643
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.34 E-value=9.6e-07 Score=85.02 Aligned_cols=166 Identities=14% Similarity=0.034 Sum_probs=97.5
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCCCcHHH----H
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAIPGIDL----N 187 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~~~~~~----l 187 (439)
..+++|.+..++.+.+++..+ ....++.++|++|+|||++|+.+++.... ++ .+. .... .... +
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~-------~i~--~~~~-~~~~i~~~~ 93 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNADMM-------FVN--GSDC-KIDFVRGPL 93 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE-------EEE--TTTC-CHHHHHTHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE-------EEc--cccc-CHHHHHHHH
Confidence 467999999999999998743 23457788899999999999999877532 11 000 0001 1111 2
Q ss_pred HHHhc-----cCCceEEecCCCCHH---HHHHHhcCCCCCCCCcEEEEEeCchHHHH-h-cCCCeEEEcCCCCHHHHHHH
Q 037205 188 FRRLS-----RMKVLIFFYDVTCFS---QLESLMGSLDWLTPVSRIILTTRNKQVLR-N-WGVSKIYEMEALEYHHALEL 257 (439)
Q Consensus 188 ~~~l~-----~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~L 257 (439)
..... +++.++++|+++... ..+.|...+.....+.++|+||....-.. . ......+++++++.++-.++
T Consensus 94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 94 TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEM 173 (324)
T ss_dssp HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHH
T ss_pred HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHH
Confidence 22222 267899999998654 34444433322235678888887543210 0 01125789999998874333
Q ss_pred H-------HHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 258 F-------SRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 258 f-------~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
+ ...+.......+ ..+....+++.++|.+-.+
T Consensus 174 l~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 174 MKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHH
T ss_pred HHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHH
Confidence 2 222222111111 1266778888898876643
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.9e-05 Score=76.32 Aligned_cols=172 Identities=18% Similarity=0.234 Sum_probs=98.2
Q ss_pred CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCC
Q 037205 113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENA 180 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~ 180 (439)
-.++.|.+..+++|.+.+.. +-...+-|.++|+||.|||.||+++++.... |+... .+.+......
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~--~s~l~sk~vG 224 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS--GAELVQKYIG 224 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE--GGGGSCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE--hHHhhccccc
Confidence 36688999999998876532 2234577899999999999999999988654 21000 0000000000
Q ss_pred CC--cHHH-HHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHH-----
Q 037205 181 IP--GIDL-NFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQV----- 234 (439)
Q Consensus 181 ~~--~~~~-l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v----- 234 (439)
.. .+.. ....-...+++|++|+++... .+..++..+..+ ..+-.||.||..+..
T Consensus 225 ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAl 304 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPAL 304 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHH
T ss_pred hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhH
Confidence 00 1111 122224578999999996320 123333322222 234455667764433
Q ss_pred HHhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 235 LRNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 235 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
...-..+..+.++..+.++-.++|..+.-+... ..+. ....+++.+.|+--|
T Consensus 305 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dv--dl~~lA~~t~G~SGA 356 (405)
T 4b4t_J 305 LRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGI--NLRKVAEKMNGCSGA 356 (405)
T ss_dssp HSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSC--CHHHHHHHCCSCCHH
T ss_pred cCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccC--CHHHHHHHCCCCCHH
Confidence 222245678999999999999999877633221 1111 145677888876544
No 47
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=1.5e-05 Score=77.23 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=99.1
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH--HHHHHHHHHHHhc-CCCCCCcHHHHHH-
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR--YLLATKLISNLLK-DENAIPGIDLNFR- 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--f~~~~~ll~~l~~-~~~~~~~~~~l~~- 189 (439)
..++|.+..++.|...+..+ +.+.+.++|++|+||||+|+.++..+.. +- ..+.. ...+......+++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~------~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYS------NMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH------HHEEEECTTSCCSHHHHHTH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCcc------ceEEEEcCcccccHHHHHHH
Confidence 55789888888888888743 3334889999999999999998877531 10 00111 1111112222221
Q ss_pred ---Hh------ccCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCchH-HHHh-cCCCeEEEcCCCCHHHHHH
Q 037205 190 ---RL------SRMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALE 256 (439)
Q Consensus 190 ---~l------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~ 256 (439)
.. .+.+-++|+|+++. ....+.|...+......+++|++|.... +... ......+.+.+++.++..+
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 11 12467889999853 2333344333322235567777765432 1111 1223578999999999988
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHH
Q 037205 257 LFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLAL 290 (439)
Q Consensus 257 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 290 (439)
.+...+-.....- ..+....+++.++|.+--+
T Consensus 177 ~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 177 RIANVLVHEKLKL--SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 8877663222111 2456788899999988754
No 48
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=3.4e-05 Score=76.99 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=96.3
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCCC
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENAI 181 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~~ 181 (439)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.... |+... ...+.......
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs--~s~L~sk~vGe 286 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI--GSELVQKYVGE 286 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE--GGGGCCCSSSH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE--hHHhhcccCCH
Confidence 5789999999999875421 2245778999999999999999999988654 21000 00000000000
Q ss_pred C--cH-HHHHHHhccCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHH-----H
Q 037205 182 P--GI-DLNFRRLSRMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQV-----L 235 (439)
Q Consensus 182 ~--~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v-----~ 235 (439)
. .+ ......-...+++|++|+++... .+..++..+..+ ..+..||.||..+.. .
T Consensus 287 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALl 366 (467)
T 4b4t_H 287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366 (467)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhh
Confidence 0 11 11222234578999999995320 122222222211 223445667754433 2
Q ss_pred HhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcH
Q 037205 236 RNWGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 236 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 288 (439)
..-..+..+.++..+.++-.++|..+.-.... ..+. ....+++.+.|+--
T Consensus 367 RpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dv--dl~~LA~~T~GfSG 416 (467)
T 4b4t_H 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGI--RWELISRLCPNSTG 416 (467)
T ss_dssp STTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSC--CHHHHHHHCCSCCH
T ss_pred ccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCC--CHHHHHHHCCCCCH
Confidence 22245678899999999999999877633221 1111 14567788888643
No 49
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.15 E-value=0.00011 Score=70.99 Aligned_cols=246 Identities=15% Similarity=0.171 Sum_probs=127.0
Q ss_pred CCcccccchHHHHHhhhccC---CCCeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHHHHhc-CCCCCCcHHHHHH
Q 037205 114 SQLVGVESRVEEIESLLSVE---SKDVYALGIWGIGGIGKTTIARATFDKISRYLLATKLISNLLK-DENAIPGIDLNFR 189 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~~l~~-~~~~~~~~~~l~~ 189 (439)
..++|.+..++.+...+..+ ......++|+|++|+||||||+.+++.... .+.. ..........+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---------~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT---------NIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC---------CEEEEETTTCCSHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEechHhcCHHHHHH
Confidence 56889888888877766532 223467899999999999999998876521 0000 0000111112222
Q ss_pred Hhc--cCCceEEecCCCCH--HHHHHHhcCCCCC--------C----------CCcEEE-EEeCchHHHHhc--CCCeEE
Q 037205 190 RLS--RMKVLIFFYDVTCF--SQLESLMGSLDWL--------T----------PVSRII-LTTRNKQVLRNW--GVSKIY 244 (439)
Q Consensus 190 ~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~gs~Ii-iTTR~~~v~~~~--~~~~~~ 244 (439)
.+. .++-++++|++... ...+.+....... + +...++ .|++...+.... ......
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~ 175 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIIL 175 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEE
T ss_pred HHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCcee
Confidence 111 23457778887532 2222222111000 0 011222 344433221111 233468
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHHHHhh------cC---CCHHHHHHHHHHHhcC
Q 037205 245 EMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVLGCFL------YK---REKEVWESAINKLQRI 315 (439)
Q Consensus 245 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L------~~---~~~~~w~~~l~~l~~~ 315 (439)
.+++.+.++-.+++.+.+-..... -..+.+..|++.+.|.|-.+..+-..+ .+ -+.+.-+.++..+..
T Consensus 176 ~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~- 252 (334)
T 1in4_A 176 ELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI- 252 (334)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTC-
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCC-
Confidence 899999999999998876332221 225678899999999997654333221 11 233444444444321
Q ss_pred CCccHHHHHHHhhcCCCHHhHHHHhcccccccc----------cCCCch---hHHHH-HHhhCCceEEccCCeEEecHHH
Q 037205 316 LYPSILEVLKISYDGLDNKEKNIFLGVACFFQV----------RIGFNL---EIGVS-VLVDKSLIVISNNNKITMHDLL 381 (439)
Q Consensus 316 ~~~~i~~~l~~Sy~~L~~~~k~~fl~la~f~~~----------~~~~~~---~~~l~-~L~~~sLi~~~~~~~~~mHdlv 381 (439)
....|+...+..+..++-.+.+ ..+... +..++ .|...+||+....|++-...-.
T Consensus 253 -----------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~~~ 321 (334)
T 1in4_A 253 -----------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAY 321 (334)
T ss_dssp -----------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred -----------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhHHHH
Confidence 1123444444444333322221 111121 11222 7889999999877776554443
Q ss_pred H
Q 037205 382 Q 382 (439)
Q Consensus 382 ~ 382 (439)
+
T Consensus 322 ~ 322 (334)
T 1in4_A 322 K 322 (334)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.13 E-value=2.8e-06 Score=86.51 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=98.6
Q ss_pred CCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 114 SQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
..++|.+..+++|.+++... ....+-|.|+|++|+|||+||+.+++.... |+ ....+.....+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~- 282 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES- 282 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHH-
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchh-
Confidence 46899999999998877531 234567899999999999999999877543 22 1111111100000
Q ss_pred CCCcHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCC--CCCCcEEEEEeCchHH-----HHhcC
Q 037205 180 AIPGIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDW--LTPVSRIILTTRNKQV-----LRNWG 239 (439)
Q Consensus 180 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~v-----~~~~~ 239 (439)
.......+.....+++.+|+||+++.. .....|+..+.. ...+.+||.||..+.. .....
T Consensus 283 ~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence 000112233334456789999999311 112222222111 1234566667665422 11113
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCC-cHHHHHH
Q 037205 240 VSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGV-PLALKVL 293 (439)
Q Consensus 240 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 293 (439)
....+.++..+.++-.+++..++....... ......++..+.|. +-.|..+
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHH
Confidence 445789999999999999988763322111 11135566667765 4445444
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=3e-05 Score=77.33 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=98.5
Q ss_pred CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC
Q 037205 111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE 178 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~ 178 (439)
..-.++.|.+..+++|.+.+.. +-...+-|.+||+||.|||+||+++++.... |+... .+.+....
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~--~s~l~sk~ 255 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP--ASGIVDKY 255 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE--GGGTCCSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe--hhhhcccc
Confidence 3346788999999888876532 2234678999999999999999999988654 21000 00000000
Q ss_pred CCCC--cHHH-HHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh
Q 037205 179 NAIP--GIDL-NFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN 237 (439)
Q Consensus 179 ~~~~--~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~ 237 (439)
.... .+.. ....-...+++|++|+++.. ..+..|+..+..+ ..+..||.||..+..+..
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 0000 1111 12222457899999999631 0122333322211 234567777765544322
Q ss_pred c-----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCcchHHHHHHHHHHhCCCcHH
Q 037205 238 W-----GVSKIYEMEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 238 ~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLa 289 (439)
. ..+..+.++..+.++-.++|..+.-+... ...+ ...+++.+.|+--|
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sGA 389 (437)
T 4b4t_L 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNGA 389 (437)
T ss_dssp TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCHH
T ss_pred HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCHH
Confidence 1 23567889988998888888877633221 1112 45677778776543
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.1e-05 Score=80.28 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=96.8
Q ss_pred CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN 179 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~ 179 (439)
.-.++.|.+..+++|.+.+.. +-...+-|.+||+||.|||.||+++++.... |+... ...+.....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~--~s~l~~~~v 256 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA--APQLVQMYI 256 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE--GGGGCSSCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe--hhhhhhccc
Confidence 346788999999998875421 2234678999999999999999999988654 11000 000000000
Q ss_pred CCC--cHHHH-HHHhccCCceEEecCCCCH-------------H---HHHHHhcCCCCCC--CCcEEEEEeCchHHHHh-
Q 037205 180 AIP--GIDLN-FRRLSRMKVLIFFYDVTCF-------------S---QLESLMGSLDWLT--PVSRIILTTRNKQVLRN- 237 (439)
Q Consensus 180 ~~~--~~~~l-~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~- 237 (439)
... .+..+ ...-...+++|++|+++.. . .+..|+..+..+. .+-.||.||..+..+..
T Consensus 257 Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTT
T ss_pred chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHh
Confidence 000 11111 2222356899999998421 0 1223333333222 23455667765543322
Q ss_pred ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCcchHHHHHHHHHHhCCCcH
Q 037205 238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPL 288 (439)
-..+..+.++..+.++-.++|..+.-+-.. ...+ ...+++.+.|+--
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~sG 388 (434)
T 4b4t_M 337 LLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFNG 388 (434)
T ss_dssp TCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCCH
T ss_pred HhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCH
Confidence 134567889999999888888766533221 1112 4567778877643
No 53
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.6e-05 Score=77.64 Aligned_cols=168 Identities=17% Similarity=0.253 Sum_probs=90.4
Q ss_pred CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCCC
Q 037205 113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDENA 180 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~~ 180 (439)
-.++.|.+..+++|.+.+.. +-...+-|.++|+||+|||+||+++++.... |+... ...+... .
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~--~~~l~~~--~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN--GSEFVHK--Y 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE--GGGTCCS--S
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe--cchhhcc--c
Confidence 36788999999888876532 2234677999999999999999999988654 21000 0000000 0
Q ss_pred CC-c---H-HHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCC--CCCCcEEEEEeCchHH---
Q 037205 181 IP-G---I-DLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDW--LTPVSRIILTTRNKQV--- 234 (439)
Q Consensus 181 ~~-~---~-~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~v--- 234 (439)
.. . + ..+...-...+++|++|+++.. ..+..|+..+.. ...+-.||.||..+..
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~ 326 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDP 326 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCH
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcCh
Confidence 00 1 1 1122222456899999998421 012233322221 1234456667764432
Q ss_pred --HHhcCCCeEEEcCCC-CHHHHHHHHHHhhhcCC-CCCcchHHHHHHHHHHhCCCcH
Q 037205 235 --LRNWGVSKIYEMEAL-EYHHALELFSRHAFKRN-HPDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 235 --~~~~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPL 288 (439)
......+..+.++.+ +.++-..+|..+.-+.. .+..+ ...+++.+.|+--
T Consensus 327 AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~sg 380 (428)
T 4b4t_K 327 ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLSG 380 (428)
T ss_dssp HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCCH
T ss_pred hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCCH
Confidence 222234456788755 45555566665553222 11212 4567777777643
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.02 E-value=1.1e-06 Score=82.19 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=83.4
Q ss_pred CCCCCcccccchHHHHHhhhcc----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 111 DNKSQLVGVESRVEEIESLLSV----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
....+++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.... |+ ....+.....+.
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL 87 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence 3446799999998888886641 1112334789999999999999999887542 11 000000000000
Q ss_pred CCCCCcHHHHHHHhccCCceEEecCCCCHH-----------------HHHHHhcCCCCCC---CCcEEEEEeCchHHHH-
Q 037205 178 ENAIPGIDLNFRRLSRMKVLIFFYDVTCFS-----------------QLESLMGSLDWLT---PVSRIILTTRNKQVLR- 236 (439)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~---~gs~IiiTTR~~~v~~- 236 (439)
. .......+.......+.+|+||+++... .+..++..+.... ....||.||.......
T Consensus 88 ~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~ 166 (268)
T 2r62_A 88 G-ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDP 166 (268)
T ss_dssp C-SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCG
T ss_pred H-HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCH
Confidence 0 0001122233333467899999995431 1233333332221 1245666776543211
Q ss_pred ----hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 237 ----NWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 237 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
.......+.++.++.++-.+++...+
T Consensus 167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp GGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred hHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 11233567888888888888887665
No 55
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.9e-05 Score=75.13 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=95.7
Q ss_pred CCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN 179 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~ 179 (439)
.-.++.|.+..+++|.+.+.. +-...+-|.++|+||.|||.||+++++.... |+... ...+.....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~--~s~l~sk~v 257 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV--GSELIQKYL 257 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE--SGGGCCSSS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE--HHHhhhccC
Confidence 336678899988888875532 2234678999999999999999999988654 21000 000000000
Q ss_pred CCC--cHHHH-HHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHhc
Q 037205 180 AIP--GIDLN-FRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 180 ~~~--~~~~l-~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~ 238 (439)
... .+..+ ...-...+++|++|+++.. ..+..++..+..+ ..+..||.||..+..+...
T Consensus 258 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpA 337 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPA 337 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTT
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHH
Confidence 000 11111 2222356899999998521 1122333222211 2344566677655443321
Q ss_pred -----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CCcchHHHHHHHHHHhCCCcH
Q 037205 239 -----GVSKIYEMEALEYHHALELFSRHAFKRNH-PDVGYEKLSSNVMKYVQGVPL 288 (439)
Q Consensus 239 -----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPL 288 (439)
..+..+.++..+.++-.++|..+.-.-.. ...+ ...+++.+.|+-=
T Consensus 338 LlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfSG 389 (437)
T 4b4t_I 338 LIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLSG 389 (437)
T ss_dssp SSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCCH
T ss_pred HhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCH
Confidence 23457889988998888988877633221 1112 4567777877643
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.97 E-value=0.00018 Score=69.50 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=96.8
Q ss_pred chHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----H------HHHHHHHHHHh------cCC--CCC
Q 037205 121 SRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----Y------LLATKLISNLL------KDE--NAI 181 (439)
Q Consensus 121 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----f------~~~~~ll~~l~------~~~--~~~ 181 (439)
...+.+.+.+..+ .-...+.++|++|+|||++|+.+++.+.. . .....+..... ... ...
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 87 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSS
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCC
Confidence 3445555555422 22457889999999999999998876531 0 00111111000 000 000
Q ss_pred CcHH---HHHHHhc-----cCCceEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCchH-HHHhc-CCCeEEEcCCC
Q 037205 182 PGID---LNFRRLS-----RMKVLIFFYDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEAL 249 (439)
Q Consensus 182 ~~~~---~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L 249 (439)
...+ .+.+.+. +++-++|+|+++.. +..+.|+..+....+++.+|++|.++. +.... .....++++++
T Consensus 88 ~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~ 167 (334)
T 1a5t_A 88 LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPP 167 (334)
T ss_dssp BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCC
Confidence 1233 3333332 45678999999743 344555555444445677777776553 22222 33468999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHHHHHH
Q 037205 250 EYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLALKVL 293 (439)
Q Consensus 250 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 293 (439)
+.++..+.+.... .. ..+.+..+++.++|.|..+..+
T Consensus 168 ~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 168 PEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999887764 11 1455678999999999866443
No 57
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.97 E-value=3.1e-05 Score=71.79 Aligned_cols=172 Identities=14% Similarity=0.147 Sum_probs=90.6
Q ss_pred CCCCCcccccchHHHHHhhhcc---C-------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC
Q 037205 111 DNKSQLVGVESRVEEIESLLSV---E-------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN 179 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~ 179 (439)
..-.+++|.+..++++.+++.. . ....+-+.|+|++|+||||||+.+++.... |+ .+....-
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-------~i~~~~~ 81 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF-------TISGSDF 81 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE-------EECSCSS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEE-------EEeHHHH
Confidence 3446789998887777665421 0 112345889999999999999999876532 11 0000000
Q ss_pred -C--C-CcHH----HHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCC--CCCCcEEEEEeCchH
Q 037205 180 -A--I-PGID----LNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDW--LTPVSRIILTTRNKQ 233 (439)
Q Consensus 180 -~--~-~~~~----~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~ 233 (439)
. . .... .+.......+.++++|+++.. ..+..++..+.. ...+..||.||..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 0 0 0111 222222345679999998321 112223221111 123456666776543
Q ss_pred HH-Hhc----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCC-CcHHHHH
Q 037205 234 VL-RNW----GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQG-VPLALKV 292 (439)
Q Consensus 234 v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~ 292 (439)
.. ... .....+.++..+.++-.+++..+.-......+ .....++..+.| .+--|..
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHH
Confidence 22 111 23467888888888888888766522211111 113445666777 5544443
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.95 E-value=2.8e-06 Score=92.63 Aligned_cols=142 Identities=12% Similarity=0.132 Sum_probs=76.4
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HH--HHHHHHHHHhcCCC
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YL--LATKLISNLLKDEN 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~--~~~~ll~~l~~~~~ 179 (439)
...+|||+.++..+...|... ..+.+.|+|.+|+||||||+.+++.+.. ++ ....+.. +...
T Consensus 169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---g~~~ 243 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---GAKY 243 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---cCcc
Confidence 356999999999999988642 2345789999999999999999887631 00 0000000 0000
Q ss_pred CCCc---HHHHHHHhc--cCCceEEecCCCCHH---------H-HHHHhcCCCCCCCCcEEEEEeCchHHH-----Hhc-
Q 037205 180 AIPG---IDLNFRRLS--RMKVLIFFYDVTCFS---------Q-LESLMGSLDWLTPVSRIILTTRNKQVL-----RNW- 238 (439)
Q Consensus 180 ~~~~---~~~l~~~l~--~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~IiiTTR~~~v~-----~~~- 238 (439)
.-.. ...+...+. +++.+|++|+++... . ...+...+. ..+..+|.+|...... ..+
T Consensus 244 ~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~ 321 (854)
T 1qvr_A 244 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALE 321 (854)
T ss_dssp --CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTC
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHH
Confidence 0001 122222222 367899999997542 0 111111111 1233455555433221 111
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHh
Q 037205 239 GVSKIYEMEALEYHHALELFSRH 261 (439)
Q Consensus 239 ~~~~~~~l~~L~~~ea~~Lf~~~ 261 (439)
.....+.+++++.++..+++...
T Consensus 322 rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 322 RRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp SCCCCEEECCCCHHHHHHHHHHH
T ss_pred hCCceEEeCCCCHHHHHHHHHhh
Confidence 12245889999999999988643
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.94 E-value=6e-05 Score=76.37 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=77.9
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HH-HHHHHHHHHhcCCCCC
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YL-LATKLISNLLKDENAI 181 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~-~~~~ll~~l~~~~~~~ 181 (439)
..+|||+.+++.+...|... ...-+.|+|.+|+|||+||+.+++.+.. |+ +... .......
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~ 252 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEF 252 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchH
Confidence 56999999999999998742 2335679999999999999999887521 11 0000 0000011
Q ss_pred -CcH-HHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH-------hcCCCeEEEcCCCCHH
Q 037205 182 -PGI-DLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR-------NWGVSKIYEMEALEYH 252 (439)
Q Consensus 182 -~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-------~~~~~~~~~l~~L~~~ 252 (439)
... ..+...-...+.+|++| ...+....|...+. ....++|.+|....... .......+.+++++.+
T Consensus 253 e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e 328 (468)
T 3pxg_A 253 EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVD 328 (468)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHH
Confidence 112 22233333567899999 22232333444433 12345665554333111 0112347899999999
Q ss_pred HHHHHHHHhh
Q 037205 253 HALELFSRHA 262 (439)
Q Consensus 253 ea~~Lf~~~a 262 (439)
+..+++...+
T Consensus 329 ~~~~iL~~~~ 338 (468)
T 3pxg_A 329 ESIQILQGLR 338 (468)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998755
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.87 E-value=9.3e-05 Score=74.79 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCcccccchHHHHHhhhcc--C--------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCCC
Q 037205 113 KSQLVGVESRVEEIESLLSV--E--------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDEN 179 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~~ 179 (439)
..+++|.+..++++.+.+.. . ..-.+-|.|+|++|+|||+||+.+++.... |+ ....+ .....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~----~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF----VELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT----TTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHH----HHHHh
Confidence 35689999888777775432 0 112345889999999999999999887543 11 00000 00000
Q ss_pred CCC---cHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh-
Q 037205 180 AIP---GIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN- 237 (439)
Q Consensus 180 ~~~---~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~- 237 (439)
... ....+.......+.+|+||+++.. ..+..|+..+..+ ..+..||.||..+..+..
T Consensus 91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA 170 (476)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGG
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchh
Confidence 000 112233334457889999999531 1233333222111 234566777766544321
Q ss_pred -c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 238 -W---GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 238 -~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
. .....+.++..+.++-.+++..++-...... +. ....+++.+.|+.
T Consensus 171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-DV--NLEIIAKRTPGFV 221 (476)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-TC--CHHHHHHTCTTCC
T ss_pred hcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-hh--hHHHHHHhcCCCc
Confidence 1 2445788998898888888876663322111 11 1344777788877
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=5.2e-06 Score=72.63 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=30.1
Q ss_pred cchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 120 ESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 120 ~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++.+.+++.. .......++|+|++|+||||||+.+++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444444432 112356899999999999999999998875
No 62
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.84 E-value=5.7e-05 Score=71.65 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCcccccchHHHHHhhhcc------------CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSV------------ESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999888888876643 012245678999999999999999887653
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.79 E-value=0.00018 Score=77.37 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=83.1
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH----HHHHH-HH----HHHHh-cCCCCCC
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR----YLLAT-KL----ISNLL-KDENAIP 182 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~~~~-~l----l~~l~-~~~~~~~ 182 (439)
...++||+.+++.+.+.|... ...-+.|+|.+|+|||++|+.+++.+.. ..+.. .+ ...+. +....-.
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence 357999999999999988743 3445689999999999999999887532 00000 00 00000 0000001
Q ss_pred cHHHHHH---Hh-ccCCceEEecCCCCH----------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHhc-------CCC
Q 037205 183 GIDLNFR---RL-SRMKVLIFFYDVTCF----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW-------GVS 241 (439)
Q Consensus 183 ~~~~l~~---~l-~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~-------~~~ 241 (439)
....++. .+ ..++.+|++|+++.. .+...++..... ..+.++|.+|......... ...
T Consensus 263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf 341 (758)
T 1r6b_X 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRF 341 (758)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCc
Confidence 1122222 22 235789999999743 222233333221 2345666666544321111 112
Q ss_pred eEEEcCCCCHHHHHHHHHHhh
Q 037205 242 KIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 242 ~~~~l~~L~~~ea~~Lf~~~a 262 (439)
..+.++.++.++..+++....
T Consensus 342 ~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 342 QKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 468899999999988887544
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.78 E-value=0.00014 Score=78.16 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhH-----------HHHHHHHHHHHhcC-CCC
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISR-----------YLLATKLISNLLKD-ENA 180 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------f~~~~~ll~~l~~~-~~~ 180 (439)
...+|||+.+++.+...|... ...-+.++|++|+|||++|+.+++.+.. ++... . ... ...
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~-~----g~~~~G~ 251 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD-M----GTKYRGE 251 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec-c----cccccch
Confidence 356999999999999998742 2334789999999999999999887521 10000 0 000 001
Q ss_pred CC--cHHHHHHHhccCCceEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-------cCCCeEEEcCCCCH
Q 037205 181 IP--GIDLNFRRLSRMKVLIFFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-------WGVSKIYEMEALEY 251 (439)
Q Consensus 181 ~~--~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~~~~~l~~L~~ 251 (439)
.. ....+.......+.+|++| ...+....|...+. ....++|.||........ ......+.++.++.
T Consensus 252 ~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~ 327 (758)
T 3pxi_A 252 FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSV 327 (758)
T ss_dssp -CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCH
Confidence 11 2233333344678899999 22233333444433 223566666654331110 01225789999999
Q ss_pred HHHHHHHHHhh
Q 037205 252 HHALELFSRHA 262 (439)
Q Consensus 252 ~ea~~Lf~~~a 262 (439)
++..+++....
T Consensus 328 ~~~~~il~~~~ 338 (758)
T 3pxi_A 328 DESIQILQGLR 338 (758)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.78 E-value=1.6e-05 Score=69.21 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=40.0
Q ss_pred CCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 113 KSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999998864 334567899999999999999998875
No 66
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.75 E-value=2.8e-05 Score=72.41 Aligned_cols=49 Identities=24% Similarity=0.137 Sum_probs=35.0
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.+..+..+.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999888876653222234677999999999999999987653
No 67
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=97.75 E-value=1.4e-05 Score=67.52 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=44.8
Q ss_pred cccchHHHHHHHHhhhhcCCCEEEEEeeecCccc----cccccccchhhHHHHHHHhhhchHHHHHHHHHH
Q 037205 4 CSLLIGLKLVLFHLTQKEHAQIVLPVFYRVDPSY----VRNQTGSFGDSFSKLQERFEQNLEKLQTWRKGL 70 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~~~~~~~vlPiFy~v~ps~----vr~q~~~~~~~~~~~~~~~~~~~e~v~~W~~aL 70 (439)
.|.||..||..++.|...+...||||||+|++++ +|....-. +..++..|....+.|.+|++||
T Consensus 78 ~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id---~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 78 QDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVD---GRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence 4899999999999997433336779999999555 45544322 1234555666667799998875
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.73 E-value=3.8e-05 Score=73.30 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=37.7
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988876422233457799999999999999998854
No 69
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=5.8e-05 Score=71.77 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=37.2
Q ss_pred CCcccccchHHHHHhhhccC------C-CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVE------S-KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.+..++.+...+... . .....+.++|++|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34789888888888776532 1 113578999999999999999998875
No 70
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.64 E-value=6.2e-05 Score=71.39 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=24.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+.+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567889999999999999999988654
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.63 E-value=0.00011 Score=78.59 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=96.6
Q ss_pred CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||+.+++.... |+ ...++. ...
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~----sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM----SKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH----SSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh----ccc
Confidence 35688999999888886531 1134678999999999999999999988654 11 111111 110
Q ss_pred CCCC---cHHHHHHHhccCCceEEecCCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEeCchHHHHh---
Q 037205 179 NAIP---GIDLNFRRLSRMKVLIFFYDVTCF-------------SQLESLMGSLDWL--TPVSRIILTTRNKQVLRN--- 237 (439)
Q Consensus 179 ~~~~---~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~--- 237 (439)
.... ....+.......+.+|+||+++.. .....|+..+... ..+-.||.||..+.....
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALr 358 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHh
Confidence 0000 112223333467899999999532 0122333222111 123345556654433221
Q ss_pred --cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCcHH
Q 037205 238 --WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVPLA 289 (439)
Q Consensus 238 --~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 289 (439)
......++++..+.++-.++|..+.-...... ......++..+.|+--|
T Consensus 359 R~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGA 409 (806)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCHH
T ss_pred CCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCHH
Confidence 13456889999999998898887653221111 11145677888777543
No 72
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=6.5e-05 Score=66.76 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCcccccc----hHHHHHhhhccCCC--CeeEEEEecCCCChhHHHHHHHHhHHhH------HHHHHHHHHHHhcCCCC
Q 037205 113 KSQLVGVES----RVEEIESLLSVESK--DVYALGIWGIGGIGKTTIARATFDKISR------YLLATKLISNLLKDENA 180 (439)
Q Consensus 113 ~~~~vGr~~----~~~~l~~~L~~~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~------f~~~~~ll~~l~~~~~~ 180 (439)
..+|++.+. .++.+.+++..... ..+.+.|+|++|+|||+||+.+++.... |+....+...+......
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQD 103 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhcc
Confidence 356776553 33444455443221 1267889999999999999999987743 22222333333222111
Q ss_pred CCcHHHHHHHhccCCceEEecCCCC
Q 037205 181 IPGIDLNFRRLSRMKVLIFFYDVTC 205 (439)
Q Consensus 181 ~~~~~~l~~~l~~~~~LlVlDdv~~ 205 (439)
.. ...+...+... -+|||||++.
T Consensus 104 ~~-~~~~~~~~~~~-~~lilDei~~ 126 (202)
T 2w58_A 104 QT-MNEKLDYIKKV-PVLMLDDLGA 126 (202)
T ss_dssp CC-CHHHHHHHHHS-SEEEEEEECC
T ss_pred ch-HHHHHHHhcCC-CEEEEcCCCC
Confidence 11 12223333333 4899999953
No 73
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00014 Score=69.36 Aligned_cols=140 Identities=12% Similarity=0.120 Sum_probs=82.1
Q ss_pred cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHhHHHH-HHHHHHHHhcCCCCCCcH---HHHHHHhc-
Q 037205 118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKISRYLL-ATKLISNLLKDENAIPGI---DLNFRRLS- 192 (439)
Q Consensus 118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~-~~~ll~~l~~~~~~~~~~---~~l~~~l~- 192 (439)
|-+..++.|.+.+..+. .+...++|++|+||||+|+.+.+....+-. ...+ ..+ ........+ ..+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l-~~~~~~~~id~ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEI-DPEGENIGIDDIRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEE-CCSSSCBCHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEE-cCCcCCCCHHHHHHHHHHHhh
Confidence 34556677777776443 678899999999999999998764210000 0000 000 000001122 33333333
Q ss_pred ----cCCceEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCch-HHHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 193 ----RMKVLIFFYDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK-QVLRNWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 193 ----~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
+++-++|+|+++. ....++|+..+....+.+.+|++|.++ .+....... .+++.+++.++..+.+.+.+
T Consensus 77 ~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 77 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 3456889999964 344555555544444677777776544 344444334 89999999999999887765
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=6.2e-05 Score=69.55 Aligned_cols=171 Identities=14% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCCCcccccchHHHHHhhhcc--C--------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 112 NKSQLVGVESRVEEIESLLSV--E--------SKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
...+++|.+....++.++... . -.-.+-+.|+|++|+||||||+.++..... ++ ....+.......
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~- 92 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV- 92 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTH-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhH-
Confidence 345688888776666654321 0 011223899999999999999999876543 11 011111000000
Q ss_pred CCCCcHHHHHHHhc-cCCceEEecCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCchHHHHh--
Q 037205 179 NAIPGIDLNFRRLS-RMKVLIFFYDVTCFS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRN-- 237 (439)
Q Consensus 179 ~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-- 237 (439)
.......+.+... ..+.++++|+++... .+..+...+... .....++.||..+.....
T Consensus 93 -~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l 171 (254)
T 1ixz_A 93 -GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 171 (254)
T ss_dssp -HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGG
T ss_pred -HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHH
Confidence 0001112222222 346799999994210 122332222111 122345556666655332
Q ss_pred ---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 238 ---WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 238 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
......+.++..+.++-.+++..++-......+ .....+++.+.|+-
T Consensus 172 ~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 172 LRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp GSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred cCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 134567889999998888888766522111111 11335666666654
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.46 E-value=5.9e-05 Score=63.50 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=35.8
Q ss_pred CcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 115 QLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999998775422233447899999999999999988753
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=0.00048 Score=70.01 Aligned_cols=168 Identities=14% Similarity=0.207 Sum_probs=91.6
Q ss_pred CCCCCcccccchHHHHHhhhcc--CC--------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 111 DNKSQLVGVESRVEEIESLLSV--ES--------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
....+++|.+..+.++.++... .. .-.+-+.|+|++|+||||||+.++..... |+ ... .+..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~----~~~~- 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS----DFVE- 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG----GGTS-
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh----HHHH-
Confidence 4456799999887777765431 10 11234899999999999999999876542 11 000 0000
Q ss_pred CCCCC-cHHHHHHHhcc----CCceEEecCCCCH----------------HHHHHHhcCCCCC--CCCcEEEEEeCchHH
Q 037205 178 ENAIP-GIDLNFRRLSR----MKVLIFFYDVTCF----------------SQLESLMGSLDWL--TPVSRIILTTRNKQV 234 (439)
Q Consensus 178 ~~~~~-~~~~l~~~l~~----~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v 234 (439)
.... ....+...+.. .+.++++|+++.. ..+..++..+..+ ..+..++.||..+..
T Consensus 103 -~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~ 181 (499)
T 2dhr_A 103 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 181 (499)
T ss_dssp -SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG
T ss_pred -hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh
Confidence 0000 12223333332 3579999999421 1133443332211 233456667766654
Q ss_pred HHh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 235 LRN-----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 235 ~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
+.. ......+.++..+.++-.+++..++-....... .....++..+.|+.
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 332 123457889999999888888776522211111 11345666666765
No 77
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.45 E-value=9.3e-05 Score=69.45 Aligned_cols=172 Identities=14% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCCCcccccchHHHHHhhhccC-C---------CCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcC
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE-S---------KDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKD 177 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~-~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~ 177 (439)
....+++|.+..++++.++...- . .-.+-+.|+|++|+||||||+.++..... ++ ....+.......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~ 116 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 116 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhH
Confidence 44467899888777776654210 0 11123899999999999999999876543 11 001111000000
Q ss_pred CCCCCcHHHHHHHh-ccCCceEEecCCCCH----------------HHHHHHhcCCCCCC--CCcEEEEEeCchHHHHh-
Q 037205 178 ENAIPGIDLNFRRL-SRMKVLIFFYDVTCF----------------SQLESLMGSLDWLT--PVSRIILTTRNKQVLRN- 237 (439)
Q Consensus 178 ~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~- 237 (439)
.......+.+.. ...+.++++|+++.. ..+..+...+.... ....++.||..+.....
T Consensus 117 --~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 117 --GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194 (278)
T ss_dssp --HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred --HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence 000111222222 234679999999421 11233332222111 22344556665544221
Q ss_pred ----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHhCCCc
Q 037205 238 ----WGVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSNVMKYVQGVP 287 (439)
Q Consensus 238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 287 (439)
......+.++..+.++-.+++..++-......+ .....++..+.|+.
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 134567889999998888888766522111111 11345666666655
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.42 E-value=0.0036 Score=64.47 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=75.7
Q ss_pred CcccccchHHHHHhhhcc----CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH------HHHHHHHHHhcCCC----
Q 037205 115 QLVGVESRVEEIESLLSV----ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL------LATKLISNLLKDEN---- 179 (439)
Q Consensus 115 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~------~~~~ll~~l~~~~~---- 179 (439)
+++|.+...+.+.+.+.. .......+.|+|++|+||||||+.++..... |. ... ...+.+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~--~~~~~g~~~~~ig 159 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD--ESEIRGHRRTYVG 159 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccch--hhhhhhHHHHHhc
Confidence 468877777666554321 1124568999999999999999999877643 11 000 000000000
Q ss_pred CC-CcHHHHHHHhccCCceEEecCCCCHHH------HHHHhcCCCCCC---------------CCcEEEEEeCchH----
Q 037205 180 AI-PGIDLNFRRLSRMKVLIFFYDVTCFSQ------LESLMGSLDWLT---------------PVSRIILTTRNKQ---- 233 (439)
Q Consensus 180 ~~-~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~---------------~gs~IiiTTR~~~---- 233 (439)
.. .............+-+++||+++.... ...|+..+.... ....+|.||....
T Consensus 160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~ 239 (543)
T 3m6a_A 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPG 239 (543)
T ss_dssp ----CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCH
T ss_pred cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCH
Confidence 00 011111222222344888999964321 233333322110 2346666766432
Q ss_pred -HHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 234 -VLRNWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 234 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
+...+ ..+.+++++.++-.+++..+.
T Consensus 240 aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 240 PLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred HHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 23332 578999999999988887764
No 79
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.37 E-value=0.0013 Score=61.52 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=76.7
Q ss_pred CCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCCC-C
Q 037205 114 SQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDEN-A 180 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~~-~ 180 (439)
.++.|.+..+++|.+.+.. +-.-.+-++|+|++|+||||||+.++..... ++ .+.+..- .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i-------~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFI-------SVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE-------EEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEE-------EEEcHHHHh
Confidence 4567777777666653311 0011223999999999999999998876542 10 0000000 0
Q ss_pred CC------cHHHHHHHh-ccCCceEEecCCCCHH-------------HHHHHhcCCCC--CCCCcEEEEEeCchHHHHhc
Q 037205 181 IP------GIDLNFRRL-SRMKVLIFFYDVTCFS-------------QLESLMGSLDW--LTPVSRIILTTRNKQVLRNW 238 (439)
Q Consensus 181 ~~------~~~~l~~~l-~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~~ 238 (439)
.. .+..+.+.. ...+.++++|+++... ....+...+.. .....-++.+|..+.+....
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHh
Confidence 00 111222222 3357899999996420 11222222211 11234455677766553321
Q ss_pred -----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 239 -----GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 239 -----~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
..+..+.++..+.++-.++|..+.
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 456788899999999899887765
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.25 E-value=0.0011 Score=71.13 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCcccccchHHHHHhhhccCC-------CCeeEEEEecCCCChhHHHHHHHHhHHhH----HHHHHHHHHHHhcCCCCCC
Q 037205 114 SQLVGVESRVEEIESLLSVES-------KDVYALGIWGIGGIGKTTIARATFDKISR----YLLATKLISNLLKDENAIP 182 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----f~~~~~ll~~l~~~~~~~~ 182 (439)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.... |+... .+.+.... ..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~--~s~~~~~~-~~- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID--MSEYMEKH-ST- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE--GGGGCSSC-CC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe--chhccccc-cc-
Confidence 568999998888887765311 12337899999999999999998876521 11000 00000000 00
Q ss_pred cHHHHHHHhc-cCCceEEecCCCCH--HHHHHHhcCCCC-----------CCCCcEEEEEeCc-----hHH----HHh--
Q 037205 183 GIDLNFRRLS-RMKVLIFFYDVTCF--SQLESLMGSLDW-----------LTPVSRIILTTRN-----KQV----LRN-- 237 (439)
Q Consensus 183 ~~~~l~~~l~-~~~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~IiiTTR~-----~~v----~~~-- 237 (439)
....+...++ ...-+|+||+++.. +....|+..+.. ...+.+||+||.. ..+ ...
T Consensus 567 ~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~ 646 (758)
T 3pxi_A 567 SGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFR 646 (758)
T ss_dssp C---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSC
T ss_pred ccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCC
Confidence 0111222222 23458999999643 223333322111 1235688888872 111 011
Q ss_pred ----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 238 ----WGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 238 ----~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
...+..+.+++|+.++-.+++....
T Consensus 647 p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 647 PEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1234688999999998888876654
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.0011 Score=71.57 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=83.7
Q ss_pred CCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhcCC
Q 037205 113 KSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLKDE 178 (439)
Q Consensus 113 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~~~ 178 (439)
-.+++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.++..... |+ .... +....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~----l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE----IMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHH----HSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchH----hhhhh
Confidence 36799999999999887742 1233457999999999999999999876543 11 0001 11100
Q ss_pred CCC-C--cHHHHHHHhccCCceEEecCCCCH----------------HHHHHHhcCCCCCCCCcEEEEEeCchHHHHh-c
Q 037205 179 NAI-P--GIDLNFRRLSRMKVLIFFYDVTCF----------------SQLESLMGSLDWLTPVSRIILTTRNKQVLRN-W 238 (439)
Q Consensus 179 ~~~-~--~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~ 238 (439)
... . ....+.......+.++++|+++.. ..+-.+..... ...+..+|.||..+..... +
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al 357 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHH
Confidence 000 0 111222333456789999999321 11222222222 1234456666665432211 1
Q ss_pred ----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 239 ----GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 239 ----~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
.....+.+...+.++-.+++..++
T Consensus 358 ~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 358 RRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred hcccccccccccCCCCHHHHHHHHHHHH
Confidence 234567888899999999888765
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.10 E-value=7.8e-05 Score=62.61 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=34.1
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999999999888875311222347799999999999999987653
No 83
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.92 E-value=0.00068 Score=64.64 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCccccc----chHHHHHhhhccCCC-CeeEEEEecCCCChhHHHHHHHHhHHh-H------HHHHHHHHHHHhcCCCCC
Q 037205 114 SQLVGVE----SRVEEIESLLSVESK-DVYALGIWGIGGIGKTTIARATFDKIS-R------YLLATKLISNLLKDENAI 181 (439)
Q Consensus 114 ~~~vGr~----~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~-~------f~~~~~ll~~l~~~~~~~ 181 (439)
.+|++.+ ..++.+.+++..... ....+.|+|.+|+|||+||..+++... . |+....++..+......-
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~ 203 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNG 203 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC--
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccc
Confidence 4565433 334444455543221 246788999999999999999998876 4 232334444443322110
Q ss_pred CcHHHHHHHhccCCceEEecCCC
Q 037205 182 PGIDLNFRRLSRMKVLIFFYDVT 204 (439)
Q Consensus 182 ~~~~~l~~~l~~~~~LlVlDdv~ 204 (439)
. .......+. +.-+|||||+.
T Consensus 204 ~-~~~~~~~~~-~~~lLiiDdig 224 (308)
T 2qgz_A 204 S-VKEEIDAVK-NVPVLILDDIG 224 (308)
T ss_dssp ---CCTTHHHH-TSSEEEEETCC
T ss_pred h-HHHHHHHhc-CCCEEEEcCCC
Confidence 0 001111222 23489999994
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.78 E-value=0.00058 Score=73.40 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCcccccchHHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45889998888887766421 1123478999999999999999988765
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.61 E-value=0.0042 Score=67.56 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=37.4
Q ss_pred CCcccccchHHHHHhhhccC-------CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVE-------SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999888888776431 1123578999999999999999998776
No 86
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.55 E-value=0.0016 Score=65.59 Aligned_cols=51 Identities=27% Similarity=0.276 Sum_probs=38.6
Q ss_pred CCCCcccccchHHHHHhhhc---cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 112 NKSQLVGVESRVEEIESLLS---VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....++|.+..++.+..++. .+....+-+.++|++|+|||+||+.+++...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34779999988876665443 2322345788999999999999999988764
No 87
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.51 E-value=0.0038 Score=59.04 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+++++|.+|+||||++..++..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998876653
No 88
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.50 E-value=0.0017 Score=69.54 Aligned_cols=150 Identities=14% Similarity=0.248 Sum_probs=78.8
Q ss_pred CCCCCcccccchHHHHHhhhcc-----------CCCCeeEEEEecCCCChhHHHHHHHHhHHhH-HH--HHHHHHHHHhc
Q 037205 111 DNKSQLVGVESRVEEIESLLSV-----------ESKDVYALGIWGIGGIGKTTIARATFDKISR-YL--LATKLISNLLK 176 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--~~~~ll~~l~~ 176 (439)
..-.++.|.+...++|.+.+.. +....+-|.++|++|.|||.||+++++.... |+ ...++++...+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence 3345677888888888776532 1123456889999999999999999988765 32 11222221111
Q ss_pred CCCCCCcHHHHHHHh-ccCCceEEecCCCCH----------------HHHHHHhcCCCCCCC--CcEEEEEeCch-----
Q 037205 177 DENAIPGIDLNFRRL-SRMKVLIFFYDVTCF----------------SQLESLMGSLDWLTP--VSRIILTTRNK----- 232 (439)
Q Consensus 177 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~--gs~IiiTTR~~----- 232 (439)
.. ...+..+.+.. +..+++|+||+++.. ..+..|+..+..... +--||.||..+
T Consensus 554 es--e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~ 631 (806)
T 3cf2_A 554 ES--EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 631 (806)
T ss_dssp SC--HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCH
T ss_pred hH--HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCH
Confidence 11 00222232322 356899999999531 012333333322222 22233344433
Q ss_pred HHHHhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 233 QVLRNWGVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 233 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
.+...-..+..+.++..+.++-.++|..+.
T Consensus 632 AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 632 AILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp HHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred hHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 222222356778888777777777776655
No 89
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.38 E-value=0.0032 Score=56.12 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....+|+|.|.+|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999998876653
No 90
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.36 E-value=0.002 Score=55.05 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|.|.|++|+||||+|+.+...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999887643
No 91
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.35 E-value=0.0018 Score=55.90 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|.|.|++|+||||+|+.+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999887653
No 92
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.34 E-value=0.0024 Score=62.16 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=34.2
Q ss_pred cccccchHHHHHhhhc-------------cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 116 LVGVESRVEEIESLLS-------------VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 116 ~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|.+..++.+...+. ......+.|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766652 1111345688999999999999999988754
No 93
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.32 E-value=0.0032 Score=55.77 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=30.5
Q ss_pred ccchHHHHHhhhcc-CCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 119 VESRVEEIESLLSV-ESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 119 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|+..++.+.+.+.. ......+|+|.|.+|+|||||++.+...+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555555543 22346799999999999999999887654
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.29 E-value=0.002 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 95
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.23 E-value=0.0017 Score=62.21 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=36.5
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999998888877632 358899999999999999988764
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.18 E-value=0.0028 Score=55.05 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+.|.|+|++|+||||+|+.+...+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999987754
No 97
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.17 E-value=0.013 Score=52.14 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=43.8
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH-HHHHHHH--------------HHHHhcCCCCCC---cHHHHHHHhccCCceEEe
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR-YLLATKL--------------ISNLLKDENAIP---GIDLNFRRLSRMKVLIFF 200 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~l--------------l~~l~~~~~~~~---~~~~l~~~l~~~~~LlVl 200 (439)
+|.|.|+||+||||.|+.+.+++.- .+....+ +........-.+ ....+.+.+..... +||
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~il 80 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGN-VIF 80 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCc-eEe
Confidence 5778999999999999999987643 1111111 111222222122 45666777766554 678
Q ss_pred cCC-CCHHHHHHH
Q 037205 201 YDV-TCFSQLESL 212 (439)
Q Consensus 201 Ddv-~~~~~~~~l 212 (439)
|.+ .+..|.+.|
T Consensus 81 DGfPRt~~Qa~~l 93 (206)
T 3sr0_A 81 DGFPRTVKQAEAL 93 (206)
T ss_dssp ESCCCSHHHHHHH
T ss_pred cCCchhHHHHHHH
Confidence 998 566665554
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.16 E-value=0.0029 Score=55.93 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|+|++|+||||+|+.+...+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999987654
No 99
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.15 E-value=0.0056 Score=57.69 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.3
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.....+|+|.|.+|+||||||+.+...+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34577999999999999999998776653
No 100
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.13 E-value=0.009 Score=57.09 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|+|.+|+||||++..++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999877654
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0039 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.-..++|+|.+|.|||||++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999988765
No 102
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.10 E-value=0.0033 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 103
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.07 E-value=0.0036 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..|.|.|++|+||||+|+.+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.04 E-value=0.0027 Score=61.11 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=33.6
Q ss_pred CCCCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 112 NKSQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 112 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....++|.+..++.+...+... ...-+.|+|.+|+|||+||+.+++..
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhC
Confidence 3456999988655544333211 12238899999999999999988765
No 105
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.02 E-value=0.0028 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|+|+|++|+|||||++.+...+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999887654
No 106
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.00 E-value=0.029 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+++|+|+.|+||||+++.++..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998876543
No 107
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.99 E-value=0.004 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988765
No 108
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.98 E-value=0.0048 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|.|.|++|+||||+|+.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987654
No 109
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.96 E-value=0.005 Score=56.37 Aligned_cols=41 Identities=20% Similarity=0.066 Sum_probs=28.6
Q ss_pred hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+.++.+.+.........|+|.|++|+||||+|+.+.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33344433332233567899999999999999999987653
No 110
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.93 E-value=0.0035 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+.|.|+|++|+||||+|+.+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999987754
No 111
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.93 E-value=0.0033 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+...+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999887653
No 112
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.93 E-value=0.0038 Score=54.44 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|+|++|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998765
No 113
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.91 E-value=0.0046 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...+|+|.|++|+||||+|+.+...+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999887543
No 114
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.89 E-value=0.0062 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+|+|+|++|.||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999987654
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.85 E-value=0.0058 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|+|+|++|.||||||+.+...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999887653
No 116
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.85 E-value=0.0071 Score=58.34 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=30.8
Q ss_pred cchHHHHHhhhcc--CCCCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 120 ESRVEEIESLLSV--ESKDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 120 ~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
+.-.+.+.+.+.. ..+....|.|+|++|+||||+++.++..+..
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3334444444421 2345667999999999999999999988764
No 117
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0054 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+...+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999887653
No 118
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.84 E-value=0.0038 Score=54.21 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|.|++|+||||+|+.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988754
No 119
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.82 E-value=0.004 Score=63.24 Aligned_cols=44 Identities=18% Similarity=0.025 Sum_probs=36.3
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.+..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 34899999888888776632 368899999999999999998865
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.81 E-value=0.018 Score=54.63 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred hHHHHHhhhccC------CCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 122 RVEEIESLLSVE------SKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 122 ~~~~l~~~L~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-.++|.+.|... .....+|+|+|.+|+||||++..++..+.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 445555555421 23467999999999999999999886654
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.80 E-value=0.0055 Score=56.50 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999987764
No 122
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.79 E-value=0.0058 Score=59.67 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999987753
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.78 E-value=0.003 Score=61.39 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=60.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhHH-----H----HHHHHHH----HHhc---CCCCCCcHHHHHHHhccCCceEEec
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISRY-----L----LATKLIS----NLLK---DENAIPGIDLNFRRLSRMKVLIFFY 201 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~f-----~----~~~~ll~----~l~~---~~~~~~~~~~l~~~l~~~~~LlVlD 201 (439)
.+++|+|+.|.|||||.+.+...+... + ...-... .+.. ..........+.+.|...+=+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 489999999999999999887665420 0 0000000 0000 0001113457888899999999999
Q ss_pred CCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHHHH
Q 037205 202 DVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 236 (439)
Q Consensus 202 dv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 236 (439)
+..+.+.++.+.... ..|..||+||.....+.
T Consensus 204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 999877766544332 24667889988765543
No 124
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.78 E-value=0.0062 Score=53.72 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|+|.|++|+||||+|+.+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999987653
No 125
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.78 E-value=0.0055 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999887643
No 126
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.77 E-value=0.0061 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|+|.|++|+||||+|+.+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987643
No 127
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.76 E-value=0.0056 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 128
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.75 E-value=0.0055 Score=54.09 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|.|++|.|||||++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999988765
No 129
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.74 E-value=0.0054 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|.|++|+||||+|+.+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999887643
No 130
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.72 E-value=0.0056 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
++++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999987653
No 131
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.71 E-value=0.0056 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988754
No 132
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.71 E-value=0.005 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|.|.|++|+||||+|+.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988754
No 133
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.69 E-value=0.006 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|++|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999887
No 134
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.67 E-value=0.0069 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|.|.|++|+||||+|+.+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999887643
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.65 E-value=0.0068 Score=52.69 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 136
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.64 E-value=0.0077 Score=52.37 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.|.|++|+||||+++.+...+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999887764
No 137
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.63 E-value=0.0069 Score=55.66 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999887754
No 138
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.61 E-value=0.028 Score=55.98 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.++|.+|+||||++..++..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998876554
No 139
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.61 E-value=0.0082 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|.|++|+||||+|+.+...+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987654
No 140
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.60 E-value=0.0073 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988654
No 141
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.59 E-value=0.0048 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=18.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|.|.|++|+||||+|+.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999887654
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.59 E-value=0.007 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+|+|+|++|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999988765
No 143
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.023 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+++|+|..|+|||||++.++..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 357999999999999999998876543
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.57 E-value=0.0051 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.++|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999987654
No 145
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.57 E-value=0.0074 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|.|++|+||||+|+.+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988754
No 146
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.56 E-value=0.0075 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988865
No 147
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0074 Score=53.03 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+...+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998876
No 148
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.55 E-value=0.0089 Score=53.73 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+.++|.|.|+||+||||.|+.+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4678999999999999999999988764
No 149
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.54 E-value=0.0076 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|.|++|.|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999764
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.53 E-value=0.0092 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999988754
No 151
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.52 E-value=0.011 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998765
No 152
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.52 E-value=0.0077 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+|+|+|++|+|||||++.+.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
No 153
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.48 E-value=0.0094 Score=51.29 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=22.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++++|.|..|+|||||+..+...+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 457899999999999999998776643
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.44 E-value=0.0078 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999987654
No 155
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.44 E-value=0.0092 Score=52.83 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 156
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.43 E-value=0.0075 Score=53.22 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.7
Q ss_pred EEEEecCCCChhHHHHHHHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~ 159 (439)
+|+|+|++|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999877
No 157
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.43 E-value=0.0095 Score=52.45 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=52.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH---------HH------HHHHHHHHHh------cCCC--CC-------C----c
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR---------YL------LATKLISNLL------KDEN--AI-------P----G 183 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~---------f~------~~~~ll~~l~------~~~~--~~-------~----~ 183 (439)
..|.|++-.|.||||+|....-+... |+ -...++..+. +... .. . .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 45667777779999999888777654 22 1123444441 0000 00 0 2
Q ss_pred HHHHHHHhccC-CceEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCchH
Q 037205 184 IDLNFRRLSRM-KVLIFFYDVT--------CFSQLESLMGSLDWLTPVSRIILTTRNKQ 233 (439)
Q Consensus 184 ~~~l~~~l~~~-~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 233 (439)
....++.+.+. -=|||||++. +.+.+-.++... .....||+|+|+..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCCc
Confidence 33445555444 4599999983 233333333332 35678999999763
No 158
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.43 E-value=0.011 Score=52.43 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+..+..++.. -+....+.|+|++|+||||+|..+++.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555542 2223468999999999999999887664
No 159
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.41 E-value=0.0078 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|+|++|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999987664
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.40 E-value=0.0081 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+|+|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999876553
No 161
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.39 E-value=0.01 Score=52.66 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999998876643
No 162
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.38 E-value=0.0093 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|+|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 163
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.37 E-value=0.0087 Score=52.92 Aligned_cols=22 Identities=50% Similarity=0.572 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 164
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.36 E-value=0.01 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|+||||+|+.+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987754
No 165
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.35 E-value=0.01 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999887654
No 166
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.33 E-value=0.011 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|+|++|.||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987764
No 167
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.31 E-value=0.0083 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.0
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-.+++|+|++|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999543
No 168
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.31 E-value=0.01 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999888763
No 169
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.30 E-value=0.013 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|+|+.|+||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998763
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.28 E-value=0.0078 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999887554
No 171
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.25 E-value=0.0085 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999987664
No 172
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.21 E-value=0.0099 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|+|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 173
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.21 E-value=0.015 Score=55.41 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred ccccchHHHHHhhhccC--CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 117 VGVESRVEEIESLLSVE--SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 117 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+|-...+..+...+... .....+|+|.|..|+||||||+.+...+
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444555555444322 3456799999999999999999876544
No 174
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.19 E-value=0.041 Score=54.73 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.++|.+|+||||++..++..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998876554
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.17 E-value=0.0094 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=22.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|.|++|+||||+|+.+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999987653
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.15 E-value=0.014 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+|+|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987764
No 177
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.11 E-value=0.01 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.098 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|.|++|+||||+|+.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999988764
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.11 E-value=0.063 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=24.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..++|.++|.+|+||||++..++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999988866543
No 179
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.09 E-value=0.15 Score=48.69 Aligned_cols=150 Identities=11% Similarity=-0.038 Sum_probs=91.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhHHHHHHHHHH-HHhcCCCCCCcHHHHHHH-----hccCCceEEecCCCC---H
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISRYLLATKLIS-NLLKDENAIPGIDLNFRR-----LSRMKVLIFFYDVTC---F 206 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~f~~~~~ll~-~l~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~---~ 206 (439)
-.++..++|..|.||++.|..+.+.... ...-. ....-... .....+.+. +-+++-++|+|+++. .
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~-~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAA----QGFEEHHTFSIDPN-TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHH----HTCCEEEEEECCTT-CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHh----CCCCeeEEEEecCC-CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence 4568899999999999999988776421 00000 00000011 123333332 335677888999865 2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEeCc-------hHHHHhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 037205 207 SQLESLMGSLDWLTPVSRIILTTRN-------KQVLRNW-GVSKIYEMEALEYHHALELFSRHAFKRNHPDVGYEKLSSN 278 (439)
Q Consensus 207 ~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 278 (439)
...+.|...+....+++.+|++|.+ ..+.... .....++..+++.++....+...+-..+.. -..+.+..
T Consensus 92 ~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~--i~~~a~~~ 169 (343)
T 1jr3_D 92 AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLE--LDDAANQV 169 (343)
T ss_dssp THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCE--ECHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHH
Confidence 4455555544434467777766543 2344443 345688999999999988887766333211 22566888
Q ss_pred HHHHhCCCcHHHHH
Q 037205 279 VMKYVQGVPLALKV 292 (439)
Q Consensus 279 i~~~~~GlPLal~~ 292 (439)
+++.++|.+..+..
T Consensus 170 l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 170 LCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHSSTTCHHHHHH
T ss_pred HHHHhchHHHHHHH
Confidence 89999998887654
No 180
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.07 E-value=0.0073 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999877654
No 181
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.05 E-value=0.015 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|.|.|++|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999887765
No 182
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.02 E-value=0.012 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..|.|.|++|+||||+|+.+...+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999988764
No 183
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.99 E-value=0.011 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...|+|.|++|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999988764
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.99 E-value=0.013 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|+.|+||||+++.+...+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999986654
No 185
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.98 E-value=0.018 Score=57.35 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=34.4
Q ss_pred CCcccccchHHHHHhhhcc------------CCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 114 SQLVGVESRVEEIESLLSV------------ESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.+..++.+...+.. .....+-|.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3477777777766554421 011245688999999999999999987754
No 186
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.98 E-value=0.084 Score=47.65 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=45.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH-HH--------------HHHHHHHHHhcCCCCCC---cHHHHHHHhccC--Cc
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR-YL--------------LATKLISNLLKDENAIP---GIDLNFRRLSRM--KV 196 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~--------------~~~~ll~~l~~~~~~~~---~~~~l~~~l~~~--~~ 196 (439)
.-.++|.|++|+||||+|+.+.+.+.. ++ -....+........-.+ ....+.+.+... .-
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 446899999999999999999887643 11 01122233333322222 345566666531 11
Q ss_pred eEEecCC-CCHHHHHHHh
Q 037205 197 LIFFYDV-TCFSQLESLM 213 (439)
Q Consensus 197 LlVlDdv-~~~~~~~~l~ 213 (439)
-.|||.+ .+..|.+.|.
T Consensus 88 g~ILDGfPRt~~Qa~~L~ 105 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMK 105 (230)
T ss_dssp CEEEESCCCSHHHHHHHH
T ss_pred CeEecCCCCcHHHHHHHH
Confidence 3577998 5666666654
No 187
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.98 E-value=0.012 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+.++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999987654
No 188
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.97 E-value=0.013 Score=53.84 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.|.|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999887653
No 189
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.95 E-value=0.018 Score=51.43 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=26.8
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+.+...+. ....+.|.|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444443 2356889999999999999999877653
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.93 E-value=0.017 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.116 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.-.++.|+|.+|+||||||..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998876
No 191
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.92 E-value=0.016 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.8
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+|+|.|++|+||||+|+.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
No 192
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.89 E-value=0.015 Score=51.35 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999987654
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.89 E-value=0.015 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-.+++|+|++|+|||||++.++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999987653
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.84 E-value=0.026 Score=54.72 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+...+........+|+|+|.+|+|||||+..+...+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444334567899999999999999999887654
No 195
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.83 E-value=0.016 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|.|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987653
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.81 E-value=0.016 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|.|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988654
No 197
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.75 E-value=0.021 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|.|..|.|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999887653
No 198
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.71 E-value=0.021 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....+|+|.|..|+|||||++.+..-+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999999999999877654
No 199
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.70 E-value=0.02 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 200
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.68 E-value=0.015 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..|+|+|++|.||||+++.+...+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46999999999999999999886543
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.68 E-value=0.016 Score=51.58 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=28.4
Q ss_pred cchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 120 ESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 120 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+...+.+...+. ....+.|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555443 235789999999999999999987765
No 202
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.68 E-value=0.018 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
No 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.66 E-value=0.019 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=23.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...|.|.|++|+||||+|+.+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999999999999887643
No 204
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.64 E-value=0.017 Score=52.26 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|..+|..+-..-.+++|+|.+|+|||||++.++..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444455322223458999999999999999987754
No 205
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.63 E-value=0.013 Score=55.07 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=20.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999887654
No 206
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.63 E-value=0.018 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|+|+.|.|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999986543
No 207
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.60 E-value=0.02 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999887753
No 208
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.60 E-value=0.024 Score=53.94 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
++.++|+|+|=|||||||.|..+..-+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 46899999999999999999887765543
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.56 E-value=0.022 Score=54.21 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=37.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH---HHHH--HHHHHHHhcCCCCCC---cHHHHHHHhccCCceEEecCCCC
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR---YLLA--TKLISNLLKDENAIP---GIDLNFRRLSRMKVLIFFYDVTC 205 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---f~~~--~~ll~~l~~~~~~~~---~~~~l~~~l~~~~~LlVlDdv~~ 205 (439)
-+++.|+|++|+||||||.+++..... |+.. .+. .. ....+ ....+.+.+...+ +||+|++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~----v~-~~~~~le~~l~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP----LS-GYNTDFNVFVDDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCS----ST-TCBCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhh----hh-hhhcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence 356789999999999999998865111 2200 000 00 00011 2334455566666 999999964
No 210
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.53 E-value=0.024 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+++|+|.+|+|||||++.++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999987554
No 211
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.53 E-value=0.022 Score=51.71 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..+|+|.|++|.||||+|+.+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987754
No 212
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.48 E-value=0.025 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+++|+|++|+|||||++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45699999999999999999877554
No 213
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.46 E-value=0.021 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999887654
No 214
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.45 E-value=0.017 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999998664
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.43 E-value=0.02 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|++|.|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998763
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.38 E-value=0.028 Score=48.56 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++++|.|..|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999998876643
No 217
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.37 E-value=0.022 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|.|+|++|+||||||..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999887753
No 218
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.35 E-value=0.023 Score=59.23 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=36.9
Q ss_pred CCcccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56899998888888877633 478999999999999999998754
No 219
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.32 E-value=0.026 Score=47.91 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-.+++|.|+.|.|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999976543
No 220
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.28 E-value=0.026 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998753
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.27 E-value=0.024 Score=50.96 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 222
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.23 E-value=0.021 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+++|+|..|+|||||++.+...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999998766543
No 223
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.20 E-value=0.044 Score=50.63 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-+..+|.........|.++|+||.|||.+|..+++.
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 355555533233457999999999999999998875
No 224
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.19 E-value=0.017 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=15.9
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999877
No 225
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.15 E-value=0.026 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988764
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.11 E-value=0.041 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+++|+|+.|+||||+++.++..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999877654
No 227
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.08 E-value=0.027 Score=53.07 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=23.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+++++|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999998876654
No 228
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.08 E-value=0.033 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|+|.|+.|+||||+++.+...+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999887653
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.05 E-value=0.025 Score=54.08 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++|.|+|+.|+||||||..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999987753
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.01 E-value=0.056 Score=51.37 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+..|..++ .+-..-.++.|.|.+|+||||||..++...
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444444 233344689999999999999999987654
No 231
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.00 E-value=0.038 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.073 Sum_probs=22.8
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-....+++|+|++|.|||||++.+...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344568999999999999999988754
No 232
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.96 E-value=0.035 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.5
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....+|+|.|..|.|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999876543
No 233
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.96 E-value=0.03 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.++|.|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999988765
No 234
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.92 E-value=0.024 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.++.|.|.+|+||||||.+++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999876553
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.88 E-value=0.087 Score=50.90 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.2
Q ss_pred hHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 122 RVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 122 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-...|...|. .+-..-+++.|+|.+|+||||||.+++....
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455666665 3333457999999999999999999887653
No 236
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.85 E-value=0.078 Score=51.15 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=29.3
Q ss_pred hHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 122 RVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 122 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-...|..+|. .+-..-+++.|+|.+|+||||||.+++....
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445555554 2323456899999999999999999876653
No 237
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.84 E-value=0.038 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=22.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999988765
No 238
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.78 E-value=0.049 Score=52.29 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=30.6
Q ss_pred ccccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 117 VGVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 117 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.|...-...|.+++. +-..-.++.|.|.+|+||||||..++....
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344444445555543 223345889999999999999999887654
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.77 E-value=0.04 Score=49.76 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-..|.|.|++|+||||+++.+.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999887754
No 240
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.76 E-value=0.069 Score=53.50 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...|..++. +-..-.++.|.|.+|+||||||..++...
T Consensus 190 ~~~LD~~~g-Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 190 FTELDRMTS-GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CHHHHHHHS-SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHhhcC-CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444442 22334589999999999999999987664
No 241
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.73 E-value=0.036 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.280 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+.|.|.|.+|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999877653
No 242
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.69 E-value=0.031 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999987644
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.65 E-value=0.037 Score=50.46 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.. .+++|+|+.|.|||||.+.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999997654
No 244
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.65 E-value=0.072 Score=53.19 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=29.0
Q ss_pred cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|...-...|..++ .+-..-.++.|.|.+|+||||||..++...
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3333444455555 233334688999999999999999887664
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.64 E-value=0.033 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999997653
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.58 E-value=0.057 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+++|+|+.|+|||||++.++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999887654
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.57 E-value=0.032 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999997653
No 248
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.56 E-value=0.05 Score=54.09 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=23.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..++|.|+|.+|+||||+|..++..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999887654
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.54 E-value=0.039 Score=59.48 Aligned_cols=150 Identities=13% Similarity=0.203 Sum_probs=81.8
Q ss_pred CCCCCcccccchHHHHHhhhccC-----------CCCeeEEEEecCCCChhHHHHHHHHhHHhH-HHHHHHHHHHHhcCC
Q 037205 111 DNKSQLVGVESRVEEIESLLSVE-----------SKDVYALGIWGIGGIGKTTIARATFDKISR-YLLATKLISNLLKDE 178 (439)
Q Consensus 111 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-f~~~~~ll~~l~~~~ 178 (439)
..-.+++|.+...+.|.+.+... -.....+.++|++|+||||||+.++..... |+... ...+....
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~--~~~l~~~~ 551 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK--GPELLTMW 551 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC--CSSSTTCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe--chHhhhhh
Confidence 34467889999888888876421 122456889999999999999999877542 11000 00000000
Q ss_pred C-CCC-cHHHHHHHh-ccCCceEEecCCCCH----------------HHHHHHhcCCCCCC--CCcEEEEEeCchHHHHh
Q 037205 179 N-AIP-GIDLNFRRL-SRMKVLIFFYDVTCF----------------SQLESLMGSLDWLT--PVSRIILTTRNKQVLRN 237 (439)
Q Consensus 179 ~-~~~-~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~ 237 (439)
. ... ....+.+.. ...+.+|+||+++.. ..+..|+..+.... .+..||.||..+.....
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~ 631 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 631 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSC
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCH
Confidence 0 000 122222222 234679999998531 12455655554322 23345556654322211
Q ss_pred -c----CCCeEEEcCCCCHHHHHHHHHHhh
Q 037205 238 -W----GVSKIYEMEALEYHHALELFSRHA 262 (439)
Q Consensus 238 -~----~~~~~~~l~~L~~~ea~~Lf~~~a 262 (439)
+ .....+.++..+.++-.+++..+.
T Consensus 632 allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 632 AILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp TTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred HHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 1 233466788888888888887765
No 250
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.53 E-value=0.047 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+-|.++|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999887653
No 251
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.53 E-value=0.048 Score=47.49 Aligned_cols=25 Identities=24% Similarity=-0.064 Sum_probs=20.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++.|+|++|+||||++..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999987776653
No 252
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=93.51 E-value=0.016 Score=49.44 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHhhh-hcCCCEEEEEeeecC
Q 037205 4 CSLLIGLKLVLFHLTQ-KEHAQIVLPVFYRVD 34 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~-~~~~~~vlPiFy~v~ 34 (439)
.|.||..||..++.+. +.+++.||||||+.-
T Consensus 85 ~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 85 QSKECDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HSHHHHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred cCHHHHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 4899999999999986 455678999999854
No 253
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.50 E-value=0.064 Score=54.41 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=29.5
Q ss_pred cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.|.+..+.+.+..........+|.+.|++|+||||+|+.+..++
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 33333444444442222344789999999999999999987765
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.50 E-value=0.043 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+++|.|.+|+|||||++.++...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999877554
No 255
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.49 E-value=0.049 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=21.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...++.+.|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678889999999999999987644
No 256
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.49 E-value=0.041 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.++.|+|.+|+|||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999987753
No 257
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.44 E-value=0.048 Score=47.39 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999987654
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.38 E-value=0.038 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+++|+|..|.|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999886543
No 259
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.37 E-value=0.05 Score=52.55 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=25.4
Q ss_pred HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
|..+|..+-..-.++.|+|.+|+|||||+..++..
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344322334579999999999999999987654
No 260
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.07 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=21.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988765
No 261
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.33 E-value=0.046 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...|.|.|..|+||||+++.+.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999877664
No 262
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.32 E-value=0.082 Score=53.57 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=22.4
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++|.|+|.+|+||||++..++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999886543
No 263
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.31 E-value=0.044 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999987754
No 264
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.28 E-value=0.048 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999987653
No 265
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.28 E-value=0.04 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.292 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999997654
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.24 E-value=0.04 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999997653
No 267
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.23 E-value=0.11 Score=51.96 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=21.6
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.++|+|.+|+|||||+..+......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh
Confidence 5889999999999999998877553
No 268
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.21 E-value=0.046 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+++|+|..|.|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999997664
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.19 E-value=0.063 Score=49.55 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=54.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhHH------HHHHHHHHHHhcCC-----------CCCCcHHHHHHHhccCCceE
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISRY------LLATKLISNLLKDE-----------NAIPGIDLNFRRLSRMKVLI 198 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~f------~~~~~ll~~l~~~~-----------~~~~~~~~l~~~l~~~~~Ll 198 (439)
.-.+++|+|+.|.|||||++.+...+... +.-.. +..+.... ........+.+.|...+=+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 34689999999999999999887654320 00000 00000000 00012345666677778888
Q ss_pred EecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCchHH
Q 037205 199 FFYDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV 234 (439)
Q Consensus 199 VlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 234 (439)
++|+..+.+....+.... ..|.-|++||.+...
T Consensus 103 llDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 103 FVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp EESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred EeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 889987665544433321 246667888876543
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.18 E-value=0.043 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999997654
No 271
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.17 E-value=0.038 Score=47.62 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 272
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.14 E-value=0.043 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999976543
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.10 E-value=0.044 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999997654
No 274
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.09 E-value=0.075 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-.+|+|+|+.|.|||||++.+...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 46899999999999999999887653
No 275
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.05 E-value=0.05 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.279 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|..|.|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999997664
No 276
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.05 E-value=0.045 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 45899999999999999997654
No 277
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.02 E-value=0.056 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999887653
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.00 E-value=0.047 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|..|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999997654
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.00 E-value=0.047 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|+|+.|.|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999987654
No 280
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.99 E-value=0.14 Score=49.59 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=29.2
Q ss_pred chHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 121 SRVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 121 ~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.-...|..+|. .+-..-+++.|+|.+|+||||||.+++....
T Consensus 46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33445555554 2223456899999999999999999876643
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.98 E-value=0.039 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999997654
No 282
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.96 E-value=0.063 Score=54.75 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.++|++|.||||+|+.+...+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987764
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.95 E-value=0.051 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=20.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-.+++|+|..|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999976543
No 284
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.95 E-value=0.066 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=21.3
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.+.|.||+||||+|..++.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4778999999999999988877654
No 285
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.93 E-value=0.072 Score=44.50 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999987654
No 286
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.93 E-value=0.1 Score=50.09 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....+++|+|.+|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999887544
No 287
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.92 E-value=0.099 Score=50.21 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 134 SKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..+..+|+|+|.+|+|||||+..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999887654
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.90 E-value=0.049 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999997653
No 289
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.89 E-value=0.049 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999887653
No 290
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.88 E-value=0.075 Score=50.03 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...++|+|+|-||+||||+|..++..+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH
Confidence 3568899999999999999998876654
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.87 E-value=0.074 Score=50.02 Aligned_cols=27 Identities=30% Similarity=0.161 Sum_probs=22.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+++|+|.+|+||||++..++..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999998876654
No 292
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.87 E-value=0.068 Score=45.83 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998763
No 293
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.87 E-value=0.069 Score=45.05 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999987654
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.83 E-value=0.051 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999997653
No 295
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.82 E-value=0.055 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887644
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.80 E-value=0.052 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|+|..|.|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999976543
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.77 E-value=0.058 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-.+++|+|+.|.|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4468999999999999999987654
No 298
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.75 E-value=0.087 Score=45.17 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999987654
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.75 E-value=0.053 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|.|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999976543
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.71 E-value=0.054 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999997653
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.66 E-value=0.055 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.+++|+|+.|.|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999976543
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.64 E-value=0.056 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999976643
No 303
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.64 E-value=0.1 Score=50.14 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=27.1
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|..+|..+-..-.++.|+|.+|+||||||..++..
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555433344578999999999999999987754
No 304
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.55 E-value=0.066 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999987654
No 305
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.54 E-value=0.041 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-.++.|.|.+|+|||+||.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999986543
No 306
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.53 E-value=0.14 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=23.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.|.|++|+||||+|+.+.+.+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999888764
No 307
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.49 E-value=0.06 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.-.+|+|.|+.|.|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999997654
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.46 E-value=0.075 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999987653
No 309
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.46 E-value=0.075 Score=46.64 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=19.7
Q ss_pred cccchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 118 GVESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 118 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
|+..-.+.+.++.. ....--|+|+|.+|+|||||...+.+.
T Consensus 13 ~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34444444444333 223456789999999999999876643
No 310
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.46 E-value=0.098 Score=44.28 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999887654
No 311
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.44 E-value=0.082 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999887654
No 312
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.40 E-value=0.061 Score=52.91 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.4
Q ss_pred hHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHH
Q 037205 122 RVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-+..|..+|..+-..-.++.|+|.+|+|||||+..++
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3445555564322334689999999999999999765
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.40 E-value=0.1 Score=43.38 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+++|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999887654
No 314
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.40 E-value=0.043 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=22.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....|.|.|..|+||||+|+.+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999877664
No 315
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.38 E-value=0.036 Score=57.55 Aligned_cols=48 Identities=15% Similarity=0.009 Sum_probs=33.9
Q ss_pred CCcccccchHHHHHhhhccCCCC---------eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 114 SQLVGVESRVEEIESLLSVESKD---------VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 114 ~~~vGr~~~~~~l~~~L~~~~~~---------~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
+.++|.+...+.+...|..+... -.-|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56899988766665555422100 0157899999999999999988664
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.38 E-value=0.073 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987653
No 317
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.37 E-value=0.081 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=21.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|.|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999987754
No 318
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.36 E-value=0.073 Score=44.27 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=18.9
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999887644
No 319
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.34 E-value=0.078 Score=44.19 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=18.4
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
|+++|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999987643
No 320
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.29 E-value=0.072 Score=45.97 Aligned_cols=26 Identities=12% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34677899999999999999988765
No 321
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.26 E-value=0.08 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.1
Q ss_pred EEEEecCCCChhHHHHHHHHhHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999887653
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.26 E-value=0.071 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887644
No 323
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.25 E-value=0.076 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999886644
No 324
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.25 E-value=0.071 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999987654
No 325
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.23 E-value=0.073 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999987653
No 326
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=92.21 E-value=0.075 Score=45.10 Aligned_cols=32 Identities=6% Similarity=-0.301 Sum_probs=27.8
Q ss_pred cccchHHHHHHHHhhh-hcCCCEEEEEeeecCc
Q 037205 4 CSLLIGLKLVLFHLTQ-KEHAQIVLPVFYRVDP 35 (439)
Q Consensus 4 ~~~~~~~el~~i~~~~-~~~~~~vlPiFy~v~p 35 (439)
.|.||..|+..++.|. +.++..||||||.-.|
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 5899999999999987 6778899999998544
No 327
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.21 E-value=0.12 Score=48.90 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=20.2
Q ss_pred EEEEecCCCChhHHHHHHHHhHH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
++.|+|.+|+||||||.+++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999876554
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.17 E-value=0.088 Score=44.57 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999987654
No 329
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.16 E-value=0.081 Score=46.72 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=24.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+|.|.|+.|+||||+|+.+++++.-
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 358999999999999999999988764
No 330
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.16 E-value=0.1 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-..|.|.|+.|+||||+++.+.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999887764
No 331
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.15 E-value=0.058 Score=53.24 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+...+++|+|..|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 35668999999999999999987763
No 332
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.15 E-value=0.075 Score=45.61 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999987654
No 333
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.13 E-value=0.072 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988754
No 334
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.11 E-value=0.083 Score=44.73 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.--|+|+|.+|+|||||...+....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 4468899999999999999987653
No 335
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.10 E-value=0.11 Score=46.64 Aligned_cols=28 Identities=18% Similarity=-0.053 Sum_probs=23.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.-.++.|+|.+|+||||++..+.++...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3468889999999999999998887754
No 336
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.08 E-value=0.093 Score=52.77 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+|.++|++|+||||+|+.+...+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457889999999999999999887653
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.06 E-value=0.073 Score=49.20 Aligned_cols=21 Identities=43% Similarity=0.427 Sum_probs=18.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 037205 138 YALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~ 158 (439)
.+++|+|..|.|||||.+.++
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999755
No 338
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.06 E-value=0.096 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=20.9
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|.|-||+||||+|..++..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la 26 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH
Confidence 5788889999999999998776653
No 339
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.99 E-value=0.074 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.9
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999987643
No 340
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.97 E-value=0.085 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+++++|.|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999997653
No 341
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.95 E-value=0.11 Score=43.53 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.1
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 342
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.95 E-value=0.085 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999876654
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.93 E-value=0.089 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999887653
No 344
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.91 E-value=0.15 Score=50.79 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=29.1
Q ss_pred cchHHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 120 ESRVEEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 120 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..-...|.+++. +-..-.++.|.|.+|+||||||..++....
T Consensus 181 ~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 181 PSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp CCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 333444444442 233446899999999999999999887654
No 345
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.90 E-value=0.086 Score=45.26 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHHHh
Q 037205 139 ALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~ 159 (439)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998764
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.89 E-value=0.085 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=19.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456889999999999999765543
No 347
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.89 E-value=0.089 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999987644
No 348
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.87 E-value=0.12 Score=46.35 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
....|.|.|+.|+||||+++.+.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356889999999999999999887753
No 349
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.86 E-value=0.067 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999998764
No 350
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.86 E-value=0.12 Score=49.71 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+..+|+|+|.+|+|||||...+....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999887643
No 351
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.84 E-value=0.16 Score=52.14 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.+.|++|+||||+|+.+...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 356899999999999999999988764
No 352
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.83 E-value=0.09 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346789999999999999887654
No 353
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.79 E-value=0.11 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=21.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|.|-||+||||+|..++..+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 6788899999999999998876654
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.76 E-value=0.12 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999987654
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.76 E-value=0.086 Score=44.95 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556889999999999999987754
No 356
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.74 E-value=0.1 Score=47.12 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-..|.|-|+.|+||||+++.+.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999887764
No 357
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.74 E-value=0.1 Score=49.72 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|..+|..+-..-.++.|+|.+|+||||||.+++..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3444455322223468999999999999999987754
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.73 E-value=0.11 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999887654
No 359
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.73 E-value=0.11 Score=49.40 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=26.3
Q ss_pred HHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 124 EEIESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|..+|..+-..-.++.|+|.+|+||||||.+++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455322233568999999999999999987754
No 360
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.70 E-value=0.091 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999987654
No 361
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.67 E-value=0.077 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999987654
No 362
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.67 E-value=0.11 Score=44.31 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3557889999999999999987654
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.66 E-value=0.11 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.0
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
+-|.|.|.+|+||||||.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998654
No 364
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.64 E-value=0.1 Score=50.51 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...++|+|..|.|||||++.+...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999876554
No 365
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.63 E-value=0.09 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999987654
No 366
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.61 E-value=0.089 Score=50.86 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|.|+.|.|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999998764
No 367
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.61 E-value=0.092 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999987653
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.56 E-value=0.12 Score=43.08 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.-|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999987644
No 369
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.56 E-value=0.15 Score=46.90 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 126 IESLLSVESKDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+.+.+.........|+|+|.+|+|||||...+...
T Consensus 25 ~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33333333335567899999999999999887654
No 370
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.55 E-value=0.13 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...+|.|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988863
No 371
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=91.51 E-value=0.042 Score=47.62 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=20.9
Q ss_pred cccchHHHHHHHHhh-hhcCCCEEEEEeee
Q 037205 4 CSLLIGLKLVLFHLT-QKEHAQIVLPVFYR 32 (439)
Q Consensus 4 ~~~~~~~el~~i~~~-~~~~~~~vlPiFy~ 32 (439)
.|.||..||..++.+ .+.+++.||||||+
T Consensus 104 ~S~wc~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 104 QNEWCHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp HHTGGGTHHHHTTCC-------CEEEEESS
T ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 489999999999975 46677889999997
No 372
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.50 E-value=0.12 Score=46.88 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
...|.|.|+.|+||||+++.+.+.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887764
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.48 E-value=0.11 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998764
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.46 E-value=0.086 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999887643
No 375
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.45 E-value=0.14 Score=42.91 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999887543
No 376
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.45 E-value=0.087 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
-.+++|+|..|.|||||.+.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999886543
No 377
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.44 E-value=0.1 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-.+++|+|+.|.|||||.+.+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHh
Confidence 4589999999999999999876
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.42 E-value=0.098 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999887654
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.39 E-value=0.11 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999887654
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.37 E-value=0.1 Score=50.35 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|.|+.|.|||||.+.++-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998763
No 381
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.36 E-value=0.15 Score=44.89 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=22.4
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999887644
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.35 E-value=0.14 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3557889999999999999887653
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.33 E-value=0.14 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.-.+++|+|+.|.|||||++.+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999887654
No 384
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.11 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4468899999999999999877543
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.11 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999887654
No 386
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.31 E-value=0.14 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999887654
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.30 E-value=0.11 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999887654
No 388
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.28 E-value=0.13 Score=45.18 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=20.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999987654
No 389
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.28 E-value=0.098 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999987643
No 390
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.25 E-value=0.28 Score=47.55 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=29.7
Q ss_pred cchHHHHHhhhc-cCCCCeeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 120 ESRVEEIESLLS-VESKDVYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 120 ~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..-...|..+|. .+-..-+++.|+|.+|+||||||..++....
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 334445555554 2222345888999999999999999877653
No 391
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.23 E-value=0.11 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
...-|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999874
No 392
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.21 E-value=0.17 Score=46.59 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....|+++|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999887654
No 393
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.19 E-value=0.11 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|.|+.|.|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 35899999999999999998764
No 394
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.18 E-value=0.12 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999887643
No 395
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.17 E-value=0.11 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||.+.++-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999998874
No 396
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.15 E-value=0.12 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=20.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567889999999999999887643
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.15 E-value=0.15 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3557889999999999999987654
No 398
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.10 E-value=0.15 Score=44.23 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999887644
No 399
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.09 E-value=0.16 Score=43.25 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.8
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
--|+++|.+|+|||||...+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999987654
No 400
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.08 E-value=0.11 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|.|+.|.|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999998863
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.06 E-value=0.1 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|.|+.|.|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999998763
No 402
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.01 E-value=0.12 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChhHHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
-.+++|.|+.|.|||||.+.++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHH
Confidence 3589999999999999999876
No 403
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.99 E-value=0.14 Score=45.91 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=24.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
..+|+|.|+.|+||||+|+.+++.+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999988654
No 404
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.93 E-value=0.13 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999887643
No 405
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.93 E-value=0.12 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3556889999999999999987654
No 406
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.93 E-value=0.15 Score=46.03 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34667899999999999999987754
No 407
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.92 E-value=0.12 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999887644
No 408
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.92 E-value=0.12 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999987654
No 409
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.92 E-value=0.15 Score=50.37 Aligned_cols=28 Identities=29% Similarity=0.144 Sum_probs=23.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
...+++++|.+|+||||++..++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999988876643
No 410
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.92 E-value=0.13 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999887654
No 411
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.92 E-value=0.097 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999987654
No 412
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.90 E-value=0.16 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
+.+.|.|.+|.||||++..+...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3889999999999999998887664
No 413
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.89 E-value=0.12 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|.|+.|.|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999998763
No 414
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.12 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999987654
No 415
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.86 E-value=0.12 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999887654
No 416
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.86 E-value=0.17 Score=44.21 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.4
Q ss_pred eEEEEe-cCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIW-GIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~-G~gGiGKTtLA~~v~~~~~ 162 (439)
++|+|+ +-||+||||+|..++..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la 27 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS 27 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 578888 5799999999998876654
No 417
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.83 E-value=0.13 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999987654
No 418
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.80 E-value=0.13 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999887654
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.79 E-value=0.07 Score=46.79 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999887654
No 420
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.76 E-value=0.18 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999987654
No 421
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.75 E-value=0.12 Score=44.92 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999987754
No 422
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.74 E-value=0.13 Score=44.44 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....|.|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34678899999999999999987654
No 423
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.73 E-value=0.094 Score=50.65 Aligned_cols=23 Identities=39% Similarity=0.461 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|.|||||.+.++-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998763
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.70 E-value=0.16 Score=45.23 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
..|.+-|+.|+||||+++.+.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999887764
No 425
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.13 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999987654
No 426
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.67 E-value=0.14 Score=45.63 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=21.5
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999988754
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.65 E-value=0.14 Score=44.54 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=20.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999988754
No 428
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.64 E-value=0.19 Score=42.74 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
....|+|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456788999999999999988763
No 429
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.59 E-value=0.15 Score=47.96 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.1
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...+.|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35678999999999999999987654
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.59 E-value=0.12 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999876654
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.58 E-value=0.18 Score=47.45 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHhhhccCCCCeeEEEEecCCCChhHHHHHHHH
Q 037205 123 VEEIESLLSVESKDVYALGIWGIGGIGKTTIARATF 158 (439)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 158 (439)
++++...+. -.+++|.|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 566666654 2478999999999999999866
No 432
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.52 E-value=0.11 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999999997753
No 433
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.48 E-value=0.12 Score=44.09 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999887643
No 434
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.48 E-value=0.12 Score=45.03 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.6
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3556889999999999999988754
No 435
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.46 E-value=0.11 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=10.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556889999999999999887654
No 436
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=90.44 E-value=0.025 Score=47.54 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=26.5
Q ss_pred cccchHHHHHHHHh-hhhcCCCEEEEEeee-cCcc
Q 037205 4 CSLLIGLKLVLFHL-TQKEHAQIVLPVFYR-VDPS 36 (439)
Q Consensus 4 ~~~~~~~el~~i~~-~~~~~~~~vlPiFy~-v~ps 36 (439)
.|.||..||..++. +.+.++..||||||+ +++.
T Consensus 74 ~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 74 KSEWXKYELDFSHFRLFDENNDAAILILLEPIEKK 108 (149)
T ss_dssp HHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChh
Confidence 48999999999985 556677889999996 5543
No 437
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.39 E-value=0.15 Score=47.90 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999987654
No 438
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.38 E-value=0.19 Score=43.07 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999887643
No 439
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.30 E-value=0.19 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999887654
No 440
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.15 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999988763
No 441
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.28 E-value=0.12 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999987654
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.25 E-value=0.17 Score=45.22 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-..|.+-|+.|+||||+++.+.+.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35788999999999999999887754
No 443
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.24 E-value=0.2 Score=43.21 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
..-|+|+|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45678999999999999998765
No 444
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.21 E-value=0.14 Score=50.05 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999998863
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.16 E-value=0.13 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999987654
No 446
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.13 E-value=0.12 Score=44.69 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..-|+|+|.+|+|||||...+....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999887543
No 447
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.13 E-value=0.17 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999988654
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.10 E-value=0.15 Score=43.89 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999887654
No 449
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.06 E-value=0.16 Score=44.33 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887643
No 450
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.05 E-value=0.25 Score=47.99 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCeeEEEEec-CCCChhHHHHHHHHhHH
Q 037205 134 SKDVYALGIWG-IGGIGKTTIARATFDKI 161 (439)
Q Consensus 134 ~~~~~vi~I~G-~gGiGKTtLA~~v~~~~ 161 (439)
....++|+|+| -||+||||+|..++..+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 34578999985 89999999999877654
No 451
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.05 E-value=0.16 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-.+++|+|..|+|||||.+.+.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999998887654
No 452
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.03 E-value=0.16 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999876643
No 453
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.03 E-value=0.15 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.7
Q ss_pred EEEEecCCCChhHHHHHHHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
-|.|+|.+|+|||+|...+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4679999999999999987644
No 454
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.02 E-value=0.2 Score=42.93 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999987743
No 455
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.01 E-value=0.14 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
..-|+|+|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998754
No 456
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.98 E-value=0.16 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999887654
No 457
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.97 E-value=0.17 Score=45.61 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=18.8
Q ss_pred EEEecCCCChhHHHHHHHHhHH
Q 037205 140 LGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~~ 161 (439)
|+|.|-||+||||+|..++..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 5668999999999999877654
No 458
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.86 E-value=0.17 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.190 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999876643
No 459
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.78 E-value=0.2 Score=44.58 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
....|||+|..|+||||+++.+..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998765
No 460
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.77 E-value=0.32 Score=46.75 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=21.1
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
....++...|-||+||||+|..++..+
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 345566667999999999999877654
No 461
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.77 E-value=0.13 Score=49.75 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|+|..|.|||||++.+...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999876543
No 462
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.76 E-value=0.18 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345779999999999999987654
No 463
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.73 E-value=0.18 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.1
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+++|+|.+|+|||||...+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999987654
No 464
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.72 E-value=0.18 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999887643
No 465
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.63 E-value=0.25 Score=47.00 Aligned_cols=25 Identities=44% Similarity=0.402 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++...|-||+||||+|..++..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Confidence 4566667899999999999877654
No 466
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.58 E-value=0.22 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.7
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.-.+++|+|+.|.|||||.+.+...+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 44689999999999999999876543
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.51 E-value=0.22 Score=43.37 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567889999999999999988654
No 468
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.50 E-value=0.12 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=20.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..-|+|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999877653
No 469
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.37 E-value=0.24 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+|+|+|+.|+||||+|+.+...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999987654
No 470
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.34 E-value=0.18 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=20.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...-++|+|..|+|||||.+.++..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3344999999999999999987754
No 471
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.34 E-value=0.26 Score=43.56 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.8
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..|.|-|.-|+||||+++.+.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999887765
No 472
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.33 E-value=0.18 Score=44.39 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=20.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999987653
No 473
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.29 E-value=0.14 Score=45.20 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567889999999999999987655
No 474
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.27 E-value=0.26 Score=47.43 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
...+++.+.|-||+||||+|..++..+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 346888899999999999999876554
No 475
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.26 E-value=0.17 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.8
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
+.|+|.+|+||||+|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999988754
No 476
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.23 E-value=0.25 Score=41.22 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 037205 138 YALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
.+.+|+|+.|.|||||..+++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999888653
No 477
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.21 E-value=0.28 Score=43.52 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.6
Q ss_pred eEEEEecC-CCChhHHHHHHHHhHH
Q 037205 138 YALGIWGI-GGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~-gGiGKTtLA~~v~~~~ 161 (439)
++|.|.|. ||+||||+|..++..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAA 26 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 57888874 8999999999877654
No 478
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.19 E-value=0.25 Score=44.34 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=20.9
Q ss_pred CeeEEEEec-CCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWG-IGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G-~gGiGKTtLA~~v~~~~ 161 (439)
..++|+|++ -||+||||+|..++..+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l 29 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL 29 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH
Confidence 457888885 69999999999877654
No 479
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.17 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=21.9
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.-.+++|+|..|.|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34579999999999999999877654
No 480
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.99 E-value=0.24 Score=42.40 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.0
Q ss_pred CeeEEEEecCCCChhHHHHHHHHh
Q 037205 136 DVYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
...-|+|+|.+|+|||||...+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445688999999999999988753
No 481
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.95 E-value=0.23 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.8
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999887643
No 482
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.95 E-value=0.15 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhHH
Q 037205 138 YALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
..++|+|..|.|||||++.+....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999887654
No 483
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.86 E-value=0.2 Score=46.79 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=24.9
Q ss_pred hHHHHHhhhccCCCCeeEEEEec---CCCChhHHHHHHHHhHH
Q 037205 122 RVEEIESLLSVESKDVYALGIWG---IGGIGKTTIARATFDKI 161 (439)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G---~gGiGKTtLA~~v~~~~ 161 (439)
.+.++.+.+.. +.++|+|++ -||+||||+|..++..+
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 34555554442 235666665 89999999999877654
No 484
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.78 E-value=0.23 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.--|+|+|.+|+|||||...+...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999987654
No 485
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=88.75 E-value=0.44 Score=46.56 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCCeeEEEEe-cCCCChhHHHHHHHHhHH
Q 037205 134 SKDVYALGIW-GIGGIGKTTIARATFDKI 161 (439)
Q Consensus 134 ~~~~~vi~I~-G~gGiGKTtLA~~v~~~~ 161 (439)
....++|+|+ |-||+||||+|..++..+
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~L 133 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAM 133 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 3457888887 689999999999876554
No 486
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.53 E-value=0.27 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhH
Q 037205 137 VYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999998753
No 487
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.47 E-value=0.26 Score=46.41 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.2
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999987654
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.46 E-value=0.21 Score=51.08 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988754
No 489
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.44 E-value=0.23 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|.|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988754
No 490
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.39 E-value=0.2 Score=49.47 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEecCCCChhHHHHHHHHhH
Q 037205 140 LGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 140 i~I~G~gGiGKTtLA~~v~~~ 160 (439)
|+|+|.+|+|||||...++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999988754
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.38 E-value=0.24 Score=49.30 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.1
Q ss_pred eeEEEEecCCCChhHHHHHHHHhHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFDKIS 162 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 162 (439)
-..++|+|..|+|||||++.+.....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35799999999999999998876643
No 492
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.29 E-value=0.28 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.5
Q ss_pred eeEEEEecCCCChhHHHHHHH
Q 037205 137 VYALGIWGIGGIGKTTIARAT 157 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v 157 (439)
..-|.|.|.||.||||+++++
T Consensus 33 ~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHH
Confidence 456789999999999999986
No 493
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.29 E-value=0.39 Score=44.57 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.3
Q ss_pred CeeEEEEecCCCChhHHHHHHHHhH
Q 037205 136 DVYALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
....|+|+|.+|+|||||...+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4668999999999999999887643
No 494
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.28 E-value=0.25 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
.+++|+|+.|.|||||.+.++.-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999999976643
No 495
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.28 E-value=0.23 Score=48.15 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=21.5
Q ss_pred CCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
++.+.|+|+|.+|+|||||...+....
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999887653
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.25 E-value=0.32 Score=49.57 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=26.1
Q ss_pred HHHhhhccCCCCeeEEEEecCCCChhHHHHHHHHhHH
Q 037205 125 EIESLLSVESKDVYALGIWGIGGIGKTTIARATFDKI 161 (439)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 161 (439)
.+...|..+-..-.+++|.|.+|+|||||++.++...
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444443222234589999999999999999987553
No 497
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.23 E-value=0.36 Score=42.30 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHhHHhH
Q 037205 139 ALGIWGIGGIGKTTIARATFDKISR 163 (439)
Q Consensus 139 vi~I~G~gGiGKTtLA~~v~~~~~~ 163 (439)
.|.|=|.-|+||||.++.+++.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999998887653
No 498
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.18 E-value=0.31 Score=44.62 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=20.7
Q ss_pred CCeeEEEEe-cCCCChhHHHHHHHHhHH
Q 037205 135 KDVYALGIW-GIGGIGKTTIARATFDKI 161 (439)
Q Consensus 135 ~~~~vi~I~-G~gGiGKTtLA~~v~~~~ 161 (439)
...++|+|+ |-||+||||+|..++..+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence 356788886 579999999999876543
No 499
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.17 E-value=0.24 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHHhH
Q 037205 138 YALGIWGIGGIGKTTIARATFDK 160 (439)
Q Consensus 138 ~vi~I~G~gGiGKTtLA~~v~~~ 160 (439)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999988654
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.09 E-value=0.25 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHh
Q 037205 137 VYALGIWGIGGIGKTTIARATFD 159 (439)
Q Consensus 137 ~~vi~I~G~gGiGKTtLA~~v~~ 159 (439)
-.+++|+|..|.|||||++.++.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998764
Done!