BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037206
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 23/104 (22%)
Query: 7 STYHNYVGSHSAKANVIVVSVDYRLAPEHXXXXXXXXXXXXXX----------------- 49
+ +H++ + A V++ SVDYRLAPEH
Sbjct: 102 TIFHDFCCEMAVHAGVVIASVDYRLAPEHRLPAAYDDAMEALQWIKDSRDEWLTNFADFS 161
Query: 50 ----RGNSAGGNIVHSMAFQAS--FDDLNGIKLSGIYLVQPYFG 87
G SAGGNI + +A+ D+L +K+ G+ L +P FG
Sbjct: 162 NCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFG 205
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 23 IVVSVDYRLAPEHX--------------------XXXXXXXXXXXXXRGNSAGGNIVHSM 62
+VVSV+YR APEH G+S+GGNI H +
Sbjct: 147 VVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHV 206
Query: 63 AFQASFDDLNGIKLSGIYLVQPYFG-----RNYGVVDNCWVIYFENCGWAGETEIVETQG 117
A +A+ + G+K+ G L+ FG + +D + + ++ W + + E
Sbjct: 207 AVRAADE---GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDAD 263
Query: 118 EDH 120
DH
Sbjct: 264 RDH 266
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 23 IVVSVDYRLAPEHX--------------------XXXXXXXXXXXXXRGNSAGGNIVHSM 62
+VVSV+YR APE+ G+S+GGNI H++
Sbjct: 148 VVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNV 207
Query: 63 AFQASFDDLNGIKLSGIYLVQPYFGRNYGV-----VDNCWVIYFENCGWAGETEIVETQG 117
A +A +GI + G L+ P FG N +D + + + W + + E +
Sbjct: 208 ALRAG---ESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGED 264
Query: 118 EDH 120
+H
Sbjct: 265 REH 267
>pdb|3QH4|A Chain A, Crystal Structure Of Esterase Lipw From Mycobacterium
Marinum
Length = 317
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 8 TYHNYVGSHSAKANVIVVSVDYRLAPEH 35
T H + +A VVSVDYRLAPEH
Sbjct: 103 TDHRQCLELARRARCAVVSVDYRLAPEH 130
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 20 ANVIVVSVDYRLAPEH 35
+N VVSVDYRLAPEH
Sbjct: 109 SNSTVVSVDYRLAPEH 124
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 10 HNYVGSHSAK-ANVIVVSVDYRLAPEH 35
H++V A + +VVSVDYRLAPEH
Sbjct: 95 HDHVCRRLANLSGAVVVSVDYRLAPEH 121
>pdb|3FAK|A Chain A, Structural And Functional Analysis Of A Hormone-Sensitive
Lipase Like Este5 From A Metagenome Library
pdb|3G9T|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Butyrate For 5sec
pdb|3G9U|A Chain A, Crystal Structure Of Este5, Was Soaked By P-nitrophenyl
Butyrate For 5min
pdb|3G9Z|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Caprylate
pdb|3H17|A Chain A, Crystal Structure Of Este5-Pmsf (I)
pdb|3H18|A Chain A, Crystal Structure Of Este5-pmsf (ii)
pdb|3H19|A Chain A, Crystal Structure Of Este5, Was Soaked By Methyl Alcohol
pdb|3H1A|A Chain A, Crystal Structure Of Este5, Was Soaked By Ethyl Alcohol
pdb|3H1B|A Chain A, Crystal Structure Of Este5, Was Soaked By Isopropyl
Alcohol
pdb|3L1H|A Chain A, Crystal Structure Of Este5, Was Soaked By Fecl3
pdb|3L1I|A Chain A, Crystal Structure Of Este5, Was Soaked By Cuso4
pdb|3L1J|A Chain A, Crystal Structure Of Este5, Was Soaked By Znso4
Length = 322
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MGSPFCSTYHNYVGSHSAKANVIVVSVDYRLAPEH 35
MGS +T+ + VG S + + +DYRLAPEH
Sbjct: 93 MGS--INTHRSMVGEISRASQAAALLLDYRLAPEH 125
>pdb|3V9A|A Chain A, Crystal Structure Of EsteraseLIPASE FROM UNCULTURED
BACTERIUM
Length = 309
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MGSPFCSTYHNYVGSHSAKANVIVVSVDYRLAPEH 35
MGS +T+ + VG S + + +DYRLAPEH
Sbjct: 80 MGS--INTHRSMVGEISRASQAAALLLDYRLAPEH 112
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 21 NVIVVSVDYRLAPEH 35
+V SVDYRLAPEH
Sbjct: 105 RAVVFSVDYRLAPEH 119
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 21 NVIVVSVDYRLAPEH 35
+V SVDYRLAPEH
Sbjct: 105 RAVVFSVDYRLAPEH 119
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 21 NVIVVSVDYRLAPEH 35
+V SVDYRLAPEH
Sbjct: 105 RAVVFSVDYRLAPEH 119
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 20 ANVIVVSVDYRLAPEH 35
++ +VVSVDYRLAPE+
Sbjct: 103 SDSVVVSVDYRLAPEY 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,375,777
Number of Sequences: 62578
Number of extensions: 161829
Number of successful extensions: 304
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 16
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)