Query 037207
Match_columns 1989
No_of_seqs 414 out of 1560
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05170 PIKKc_SMG1 Suppressor 100.0 5E-65 1.1E-69 591.9 28.0 285 232-516 1-307 (307)
2 KOG0891 DNA-dependent protein 100.0 2E-64 4.4E-69 676.3 18.8 535 2-623 1770-2334(2341)
3 KOG0890 Protein kinase of the 100.0 9.7E-62 2.1E-66 633.9 30.1 403 139-623 1936-2375(2382)
4 KOG0892 Protein kinase ATM/Tel 100.0 2.8E-60 6.1E-65 622.0 27.6 340 226-623 2437-2799(2806)
5 COG5032 TEL1 Phosphatidylinosi 100.0 6.7E-59 1.4E-63 635.7 36.9 492 2-623 1575-2098(2105)
6 cd05169 PIKKc_TOR TOR (Target 100.0 1.1E-59 2.4E-64 540.7 24.0 256 232-515 1-279 (280)
7 cd05171 PIKKc_ATM Ataxia telan 100.0 2E-59 4.4E-64 538.8 26.0 256 232-515 1-278 (279)
8 cd05163 TRRAP TRansformation/t 100.0 4E-59 8.6E-64 529.9 22.8 226 232-516 1-253 (253)
9 cd05172 PIKKc_DNA-PK DNA-depen 100.0 5.5E-56 1.2E-60 499.6 21.5 212 232-516 1-235 (235)
10 cd00892 PIKKc_ATR ATR (Ataxia 100.0 4.5E-54 9.8E-59 484.6 22.2 215 232-516 1-237 (237)
11 cd05164 PIKKc Phosphoinositide 100.0 7.4E-51 1.6E-55 454.7 21.0 200 232-509 1-222 (222)
12 cd00142 PI3Kc_like Phosphoinos 100.0 2.6E-46 5.6E-51 416.9 20.9 197 232-509 1-219 (219)
13 smart00146 PI3Kc Phosphoinosit 100.0 4.4E-45 9.5E-50 402.5 20.0 182 257-517 18-200 (202)
14 PF00454 PI3_PI4_kinase: Phosp 100.0 5.4E-44 1.2E-48 398.3 16.9 212 257-516 20-235 (235)
15 cd00891 PI3Kc Phosphoinositide 100.0 7.3E-43 1.6E-47 412.3 24.6 222 226-515 53-303 (352)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 1E-42 2.2E-47 410.9 24.5 220 228-516 55-305 (353)
17 cd00896 PI3Kc_III Phosphoinosi 100.0 1E-41 2.2E-46 402.2 27.1 210 226-516 57-298 (350)
18 cd05165 PI3Kc_I Phosphoinositi 100.0 2.4E-41 5.3E-46 399.5 24.3 222 227-515 59-316 (366)
19 KOG0889 Histone acetyltransfer 100.0 4.7E-41 1E-45 449.3 27.6 525 1-622 2950-3542(3550)
20 cd05168 PI4Kc_III_beta Phospho 100.0 2.2E-41 4.7E-46 391.2 16.9 185 257-514 51-238 (293)
21 cd05177 PI3Kc_C2_gamma Phospho 100.0 1.3E-40 2.9E-45 391.9 23.1 222 226-516 54-306 (354)
22 cd05173 PI3Kc_IA_beta Phosphoi 100.0 2.7E-39 5.9E-44 381.8 23.2 222 227-515 58-311 (362)
23 cd05174 PI3Kc_IA_delta Phospho 100.0 5.8E-39 1.3E-43 378.2 25.2 217 229-513 60-309 (361)
24 cd00894 PI3Kc_IB_gamma Phospho 100.0 4E-39 8.6E-44 380.0 22.6 217 227-511 60-311 (365)
25 cd00893 PI4Kc_III Phosphoinosi 100.0 4.5E-39 9.7E-44 371.5 20.2 185 257-515 51-238 (289)
26 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.3E-37 2.8E-42 365.7 24.2 218 229-515 56-304 (353)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 1.2E-36 2.5E-41 354.1 23.0 215 227-515 5-260 (311)
28 cd05175 PI3Kc_IA_alpha Phospho 100.0 2.5E-35 5.3E-40 347.1 21.9 217 227-511 58-312 (366)
29 cd00895 PI3Kc_C2_beta Phosphoi 100.0 2E-34 4.3E-39 339.0 24.6 215 226-509 54-299 (354)
30 KOG0904 Phosphatidylinositol 3 99.9 2.5E-25 5.4E-30 274.1 11.0 212 236-513 781-1025(1076)
31 KOG0906 Phosphatidylinositol 3 99.9 6.7E-23 1.5E-27 247.2 28.6 212 226-514 551-788 (843)
32 KOG0905 Phosphoinositide 3-kin 99.9 1E-22 2.2E-27 255.0 14.1 208 237-513 1059-1296(1639)
33 KOG0903 Phosphatidylinositol 4 99.8 1.8E-20 3.9E-25 230.3 16.0 181 257-512 606-790 (847)
34 KOG0902 Phosphatidylinositol 4 99.8 7.5E-19 1.6E-23 224.6 21.3 182 257-515 1564-1751(1803)
35 PTZ00303 phosphatidylinositol 99.7 8.5E-17 1.8E-21 195.8 13.1 131 257-473 1069-1199(1374)
36 PF08771 Rapamycin_bind: Rapam 99.4 1.7E-13 3.6E-18 138.0 8.0 97 53-180 1-99 (100)
37 PF02260 FATC: FATC domain; I 99.3 2.9E-13 6.2E-18 111.2 1.6 33 1957-1989 1-33 (33)
38 KOG0891 DNA-dependent protein 98.9 8.5E-10 1.8E-14 153.2 4.5 62 1928-1989 2280-2341(2341)
39 KOG0890 Protein kinase of the 98.7 9.2E-09 2E-13 140.1 4.3 52 1938-1989 2331-2382(2382)
40 KOG0892 Protein kinase ATM/Tel 98.3 4.1E-07 8.9E-12 125.4 4.0 54 1934-1989 2753-2806(2806)
41 COG5032 TEL1 Phosphatidylinosi 98.0 3.1E-06 6.6E-11 120.6 4.1 59 1931-1989 2047-2105(2105)
42 PF02260 FATC: FATC domain; I 88.0 0.28 6.1E-06 41.5 1.5 24 599-623 3-26 (33)
43 cd05145 RIO1_like RIO kinase f 68.0 6.9 0.00015 43.6 4.7 25 423-449 142-166 (190)
44 KOG0608 Warts/lats-like serine 66.7 7 0.00015 51.4 4.8 26 423-449 753-778 (1034)
45 cd05147 RIO1_euk RIO kinase fa 65.9 7.1 0.00015 44.0 4.4 26 423-450 142-167 (190)
46 PRK14879 serine/threonine prot 64.3 15 0.00032 40.9 6.4 24 423-448 119-142 (211)
47 TIGR03724 arch_bud32 Kae1-asso 62.2 15 0.00032 40.6 5.9 23 423-447 114-136 (199)
48 cd05151 ChoK Choline Kinase (C 58.7 7.9 0.00017 41.2 3.0 30 417-448 106-135 (170)
49 TIGR03843 conserved hypothetic 55.4 11 0.00023 45.0 3.5 42 409-451 134-175 (253)
50 cd05144 RIO2_C RIO kinase fami 50.0 14 0.00029 41.3 3.1 30 421-451 147-176 (198)
51 smart00090 RIO RIO-like kinase 49.0 15 0.00033 43.0 3.4 28 422-451 172-199 (237)
52 PF01636 APH: Phosphotransfera 47.5 13 0.00027 41.1 2.4 34 415-448 163-196 (239)
53 cd05122 PKc_STE Catalytic doma 46.4 67 0.0014 35.5 7.8 52 420-472 119-172 (253)
54 cd05119 RIO RIO kinase family, 46.3 15 0.00032 40.1 2.6 27 422-450 138-164 (187)
55 cd06656 STKc_PAK3 Catalytic do 43.2 56 0.0012 38.4 7.0 48 422-470 138-188 (297)
56 TIGR01982 UbiB 2-polyprenylphe 43.2 30 0.00065 44.2 5.0 25 423-448 281-305 (437)
57 PRK10359 lipopolysaccharide co 42.2 17 0.00037 43.1 2.4 23 423-447 159-181 (232)
58 cd00180 PKc Catalytic domain o 42.1 1.8E+02 0.0039 30.7 9.8 44 405-450 100-143 (215)
59 cd09235 V_Alix Middle V-domain 41.6 2.2E+02 0.0048 35.5 11.9 156 680-843 41-230 (339)
60 PRK04750 ubiB putative ubiquin 40.1 17 0.00037 47.8 2.3 27 422-448 283-312 (537)
61 COG0661 AarF Predicted unusual 38.9 21 0.00045 46.8 2.7 25 422-447 288-312 (517)
62 cd09234 V_HD-PTP_like Protein- 38.2 3.1E+02 0.0066 34.3 12.4 152 686-842 47-231 (337)
63 KOG0616 cAMP-dependent protein 38.1 21 0.00047 43.8 2.5 37 412-449 153-193 (355)
64 KOG1006 Mitogen-activated prot 37.8 21 0.00045 43.5 2.2 45 423-468 192-243 (361)
65 cd05120 APH_ChoK_like Aminogly 36.7 29 0.00063 35.0 2.9 25 423-448 113-137 (155)
66 PF00069 Pkinase: Protein kina 35.4 43 0.00093 37.6 4.2 48 422-470 121-171 (260)
67 PRK01723 3-deoxy-D-manno-octul 35.1 28 0.00062 40.7 2.8 26 422-448 165-190 (239)
68 cd05154 ACAD10_11_like Acyl-Co 33.6 32 0.00069 38.0 2.8 33 416-448 172-205 (223)
69 PF13575 DUF4135: Domain of un 33.2 3.8E+02 0.0083 33.7 12.2 44 405-450 135-178 (370)
70 cd05155 APH_ChoK_like_1 Unchar 32.6 36 0.00077 39.2 3.1 29 417-447 163-192 (235)
71 cd05042 PTKc_Aatyk Catalytic d 32.5 54 0.0012 37.5 4.5 27 423-450 124-150 (269)
72 cd05156 ChoK_euk Choline Kinas 32.3 51 0.0011 39.2 4.3 33 416-448 177-212 (302)
73 cd05598 STKc_LATS Catalytic do 31.7 62 0.0014 39.4 5.1 25 422-447 124-148 (376)
74 PTZ00426 cAMP-dependent protei 31.3 96 0.0021 37.8 6.5 26 423-449 155-180 (340)
75 PRK05231 homoserine kinase; Pr 31.2 36 0.00078 40.8 2.9 26 420-447 189-215 (319)
76 PRK09605 bifunctional UGMP fam 31.1 66 0.0014 42.0 5.4 42 403-448 430-475 (535)
77 cd05588 STKc_aPKC Catalytic do 31.1 59 0.0013 39.1 4.6 26 423-449 120-145 (329)
78 KOG0605 NDR and related serine 30.6 25 0.00054 45.9 1.5 65 377-447 220-288 (550)
79 KOG0994 Extracellular matrix g 30.4 2E+03 0.044 32.1 20.7 31 789-819 1714-1744(1758)
80 cd06624 STKc_ASK Catalytic dom 30.2 62 0.0013 37.0 4.5 28 422-449 131-158 (268)
81 cd05157 ETNK_euk Ethanolamine 29.6 45 0.00099 37.9 3.2 33 416-448 168-200 (235)
82 cd05153 HomoserineK_II Homoser 29.1 38 0.00082 40.0 2.6 30 418-448 175-204 (296)
83 cd05617 STKc_aPKC_zeta Catalyt 28.6 76 0.0016 38.1 5.0 26 423-449 120-145 (327)
84 cd05626 STKc_LATS2 Catalytic d 28.2 76 0.0016 39.0 5.0 25 423-448 125-149 (381)
85 cd05627 STKc_NDR2 Catalytic do 28.1 34 0.00073 41.5 2.0 26 423-449 125-150 (360)
86 PRK12274 serine/threonine prot 28.1 45 0.00097 39.5 2.8 26 423-449 115-141 (218)
87 TIGR02172 Fb_sc_TIGR02172 Fibr 28.1 40 0.00087 39.3 2.5 27 419-447 154-180 (226)
88 PF10510 PIG-S: Phosphatidylin 27.5 1.4E+02 0.0031 39.2 7.5 81 934-1020 348-442 (517)
89 cd05604 STKc_SGK3 Catalytic do 27.4 82 0.0018 37.6 5.0 26 423-449 120-145 (325)
90 cd06655 STKc_PAK2 Catalytic do 27.4 93 0.002 36.7 5.4 29 420-449 136-164 (296)
91 PF14643 DUF4455: Domain of un 27.3 1.5E+03 0.034 29.7 21.3 70 708-782 208-280 (473)
92 cd06613 STKc_MAP4K3_like Catal 26.0 86 0.0019 35.4 4.6 28 421-449 123-150 (262)
93 PF12290 DUF3802: Protein of u 25.6 2.4E+02 0.0052 30.6 7.2 60 88-152 49-108 (113)
94 PRK04863 mukB cell division pr 25.2 2.7E+03 0.058 31.8 39.4 64 1068-1131 966-1047(1486)
95 TIGR00938 thrB_alt homoserine 24.6 56 0.0012 39.2 3.0 29 418-447 187-215 (307)
96 cd05625 STKc_LATS1 Catalytic d 24.5 98 0.0021 38.0 5.0 25 423-448 125-149 (382)
97 COG3642 Mn2+-dependent serine/ 24.4 59 0.0013 38.1 2.9 26 423-450 116-141 (204)
98 TIGR02906 spore_CotS spore coa 24.1 56 0.0012 38.7 2.8 31 416-448 185-215 (313)
99 KOG1854 Mitochondrial inner me 24.1 1.7E+02 0.0036 39.4 7.0 101 1068-1194 525-636 (657)
100 PF06176 WaaY: Lipopolysacchar 23.7 63 0.0014 38.6 3.0 24 422-447 158-181 (229)
101 cd05607 STKc_GRK7 Catalytic do 23.3 1.1E+02 0.0023 35.7 4.8 26 423-449 119-144 (277)
102 KOG3365 NADH:ubiquinone oxidor 22.9 47 0.001 36.8 1.6 38 1939-1988 92-129 (145)
103 KOG0598 Ribosomal protein S6 k 22.9 43 0.00094 42.0 1.6 35 414-449 136-174 (357)
104 KOG0612 Rho-associated, coiled 22.9 2.7E+03 0.059 31.0 32.5 127 378-511 155-324 (1317)
105 cd06625 STKc_MEKK3_like Cataly 22.7 1.8E+02 0.0039 33.0 6.3 26 422-448 127-152 (263)
106 COG2334 Putative homoserine ki 22.5 58 0.0013 40.5 2.6 26 423-448 202-227 (331)
107 PF01163 RIO1: RIO1 family; I 22.3 68 0.0015 36.9 2.9 27 423-451 131-157 (188)
108 KOG0889 Histone acetyltransfer 22.2 58 0.0013 50.4 2.8 54 1932-1989 3497-3550(3550)
109 cd05628 STKc_NDR1 Catalytic do 22.1 49 0.0011 40.3 1.9 25 423-448 125-149 (363)
110 cd06657 STKc_PAK4 Catalytic do 22.1 1.2E+02 0.0026 35.8 5.0 28 422-450 139-166 (292)
111 cd05069 PTKc_Yes Catalytic dom 21.9 1.2E+02 0.0026 34.6 4.8 25 423-448 126-150 (260)
112 cd05618 STKc_aPKC_iota Catalyt 21.8 1.2E+02 0.0026 36.5 5.0 26 423-449 120-145 (329)
113 PF14782 BBS2_C: Ciliary BBSom 21.8 6E+02 0.013 33.2 11.2 130 547-706 285-417 (431)
114 KOG0603 Ribosomal protein S6 k 21.6 1.3E+02 0.0029 40.3 5.5 40 412-451 428-467 (612)
115 cd05587 STKc_cPKC Catalytic do 21.5 51 0.0011 39.4 1.8 25 423-448 125-149 (324)
116 PRK11768 serine/threonine prot 21.5 49 0.0011 40.5 1.7 30 416-448 194-223 (325)
117 cd05594 STKc_PKB_alpha Catalyt 21.4 66 0.0014 38.4 2.7 25 423-448 120-144 (325)
118 cd06640 STKc_MST4 Catalytic do 21.1 1.6E+02 0.0034 34.1 5.6 27 422-449 124-150 (277)
119 cd05601 STKc_CRIK Catalytic do 21.0 1.3E+02 0.0028 36.0 4.9 26 422-448 125-150 (330)
120 cd08530 STKc_CNK2-like Catalyt 20.2 3.8E+02 0.0082 30.1 8.2 47 422-469 126-173 (256)
121 cd05590 STKc_nPKC_eta Catalyti 20.0 56 0.0012 39.0 1.7 26 423-449 120-145 (320)
No 1
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=5e-65 Score=591.85 Aligned_cols=285 Identities=51% Similarity=0.933 Sum_probs=258.2
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
|++|.|+|.|++||++||||+|+|+ |||++||.+|.++++|++|+|.|++|.||||++
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 6799999999999999999999997 999999999999999999999999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+|++||++||+.|+++.++....................+|.++||+++.+.+++.++....++.+|+.+++
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 99999999999999999999998876643211000000000111234678899999988888777655556788999999
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+++|.++++++|+++|++++|..++++++||.+|++|++|+|+|||+|||||||||||+||||++.||+|+|||||+||+
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~ 240 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccc
Q 037207 450 KGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTR 516 (1989)
Q Consensus 450 kGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~ 516 (1989)
+|+.+++||.|||||||||+++||+.|++|.|+.+|+.++++||++++.|+++|++|+||||++|+.
T Consensus 241 ~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~~ 307 (307)
T cd05170 241 KGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTA 307 (307)
T ss_pred ccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccccC
Confidence 9998999999999999999999999999999999999999999999999999999999999999973
No 2
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=2e-64 Score=676.32 Aligned_cols=535 Identities=29% Similarity=0.460 Sum_probs=431.4
Q ss_pred ccccCCceeEeceeccccccccCChHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Q 037207 2 LAKLSPWCIVYPTLVDVNAYEERPSEELQHILGCLRELYPRLIQDVELMINELGNLTVLWEELWLSTLQDLHADVMRRIN 81 (1989)
Q Consensus 2 IG~~~PQAVvYPL~V~~~s~~~~~se~a~~Il~~Lr~~hP~LV~ev~l~v~ELiRIavLW~E~Wl~~L~qL~~dv~rRl~ 81 (1989)
+|+.||||++||++|++++....++..+..|+++|+.++|.||+++.++.+|++|++++|+|.|++.++
T Consensus 1770 ig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~lvs~elir~a~lwhe~w~e~ld----------- 1838 (2341)
T KOG0891|consen 1770 IGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARLVSEELIRVAILWHEQWHEGLE----------- 1838 (2341)
T ss_pred hhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhhhHhhhhhccH-----------
Confidence 799999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred HHHHHHHHHHhcccCCHHHHhhhhHHHHHHhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHhhcCCc--c
Q 037207 82 VLKEEAARIAENATLSQSEKKKINAAKYSAMMAPIVVALERRLASTSRKPETPHEIWFHEEFGEQLKSAILNFKTPP--A 159 (1989)
Q Consensus 82 ~L~eEaaRl~~n~~Ls~~eK~~i~~~k~~aim~Piv~~Le~~~a~Ts~~peTphE~~F~k~yg~~L~~Aie~lk~~~--~ 159 (1989)
|+.|+|. .+. +..++++++.|++..++ +.|.|..|..|++.||.++..+.+...... +
T Consensus 1839 ----eAsr~yf------~~~---nv~~m~~~l~p~~~~l~-------~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~ 1898 (2341)
T KOG0891|consen 1839 ----EASRLYF------SDH---NVEGMFAVLRPLHEMLE-------RGPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSG 1898 (2341)
T ss_pred ----HHHHHHh------hHh---hHHHHHHHHhHHHHHhh-------cCCcchhhhhhHHhhChhhHHHHHHHHHHHhcc
Confidence 6788873 233 47788888999888776 567799999999999999999988766432 3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhh-ccCcccccccChhhhccCCCCCCCCCcccccccccCCCCccccCCCcEEEEEEece
Q 037207 160 SAAALGDVWRPFDNIAASLASHQ-RKSSVSLSEVAPQLSLLSSSDVPMPGFEKQVATSESDGGLTATLRGIVTIASFSEE 238 (1989)
Q Consensus 160 ~~~~L~e~W~~fk~I~k~L~~~~-kkssL~LedISP~La~fs~seIeVPGqY~~~~~s~~d~~~t~~~~~~VrI~rF~p~ 238 (1989)
...++++.|+.+.+.++++.... ...++.+..+||.|..-++.++++||+|.+ ..++++|.+|.++
T Consensus 1899 ~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~-------------~~~~i~i~~f~~~ 1965 (2341)
T KOG0891|consen 1899 DVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDP-------------GKPIIRIQSFEPK 1965 (2341)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCC-------------CceEEehhhccHH
Confidence 45689999999988888887644 446899999999999999999999999964 4789999999999
Q ss_pred eEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeee
Q 037207 239 VSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQW 296 (1989)
Q Consensus 239 V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEW 296 (1989)
+.|+.||+||||+.|+|+ |+|++||+++..+.+|.||++.++.|.|+|++++.|||+|
T Consensus 1966 ~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gW 2045 (2341)
T KOG0891|consen 1966 FNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGW 2045 (2341)
T ss_pred HHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeee
Confidence 999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHH
Q 037207 297 VDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDL 376 (1989)
Q Consensus 297 VpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL 376 (1989)
||+++|++.++++|+..+.+.- +. + ... .++ .. .........+|.++|+..
T Consensus 2046 v~~~dtlh~L~r~~r~~k~i~l-------~~----------e----h~~---~~~-~~----l~~~~ltl~qk~~vfe~~ 2096 (2341)
T KOG0891|consen 2046 VPNCDTLHTLIREYREKKKIPL-------NI----------E----HRV---MLQ-MA----PDYDHLTLMQKVEVFEYA 2096 (2341)
T ss_pred ecccccHHHHHHHHHHhhccCC-------cc----------h----HHH---HHh-cC----ccccchhhhhHHhHhHHH
Confidence 9999999999999987652100 00 0 000 000 00 001122346788999999
Q ss_pred HhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccccC-CCCc
Q 037207 377 MKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKG-QRLK 455 (1989)
Q Consensus 377 ~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekG-krL~ 455 (1989)
...++++++++.+|.++++++.|+.+|.+||+|+|+|||+|||+|+|||||+|+|+++.||+++|||||+||+.. .+.+
T Consensus 2097 ~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek 2176 (2341)
T KOG0891|consen 2097 LSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREK 2176 (2341)
T ss_pred hhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 5788
Q ss_pred CCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccccCcCCcc--ccCC-ccccc
Q 037207 456 VPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTRGDFHDDA--AIGG-EERKG 532 (1989)
Q Consensus 456 vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~~~~~~~a--~~~g-~er~~ 532 (1989)
+||.+||||||+++++|.++|.+|.|+.+|+.+++++|.|++.+++++++|+|||+++|+..+..... ..++ ....-
T Consensus 2177 ~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~ 2256 (2341)
T KOG0891|consen 2177 FPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPL 2256 (2341)
T ss_pred ccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999875322111 1111 11110
Q ss_pred hhhhhhhhhhhhhhhhhccchhhh-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037207 533 MELAVSLSLFASRVQEIRVPLQEH-HDLLLATLPAVELALERFADVLSQYELASALFYRADQERSNLVLHETSTKSMVAE 611 (1989)
Q Consensus 533 me~~~slslf~sRv~ei~~~lq~~-~d~l~~~l~~a~~aL~~~l~~L~~~e~~s~~~~~~~~~~~~~l~~E~~v~~Lv~e 611 (1989)
+..+.... -.++..+........ ..+ ...+.+...+.+..+++.+- +.....-+++.+.|..|.+.
T Consensus 2257 ~~~~e~~~-~~a~~~~~~~~~~~~~~~e--~~n~~~~~vl~~~~~kltg~----------~~~~~~~l~v~~qv~~l~~q 2323 (2341)
T KOG0891|consen 2257 KNRKELGL-PRAMAGEEIAVLESSVKPE--ALNARAIQVLKRISDKLTGR----------DFVHEEPLDVPEQVEKLIQQ 2323 (2341)
T ss_pred cchhhhcc-HHhhhcccccccccccccc--ccChhhHHHHHhccccccee----------eccCcccCcHHHHHHHHHHh
Confidence 11111000 000111100111111 000 11122333444444544443 23334557788899999999
Q ss_pred HhcchhhhhhhH
Q 037207 612 ANCNAEKIRASF 623 (1989)
Q Consensus 612 A~~~~enl~~~~ 623 (1989)
||+ ++|+|..|
T Consensus 2324 ats-~e~lc~~y 2334 (2341)
T KOG0891|consen 2324 ATS-PENLCQCY 2334 (2341)
T ss_pred hcC-hHhhhccc
Confidence 999 99999887
No 3
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.7e-62 Score=633.92 Aligned_cols=403 Identities=29% Similarity=0.457 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHhhhcc------CcccccccChhhhcc-CCCCCCCCCccc
Q 037207 139 FHEEFGEQLKSAILNFKTPPASAAALGDVWRPFDNIAASLASHQRK------SSVSLSEVAPQLSLL-SSSDVPMPGFEK 211 (1989)
Q Consensus 139 F~k~yg~~L~~Aie~lk~~~~~~~~L~e~W~~fk~I~k~L~~~~kk------ssL~LedISP~La~f-s~seIeVPGqY~ 211 (1989)
+..++..+..++.+.++.......+++.+...+..++++|-+.+++ +.+.|+.=-+.|... ..++|-||-+-.
T Consensus 1936 ~kS~~p~R~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~ 2015 (2382)
T KOG0890|consen 1936 SKSNVPSRVERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSI 2015 (2382)
T ss_pred HhcccHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhh
Confidence 5567777888888877765555668889999999999999876533 234555544555544 346777776433
Q ss_pred ccccccCCCC-------ccccCCCcEEEEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHH
Q 037207 212 QVATSESDGG-------LTATLRGIVTIASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAV 262 (1989)
Q Consensus 212 ~~~~s~~d~~-------~t~~~~~~VrI~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLI 262 (1989)
-.+..+...+ .+++..+-.+|.+|++.|+|++|.||||||+++|+ +|-.+|
T Consensus 2016 M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~li 2095 (2382)
T KOG0890|consen 2016 MDPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELI 2095 (2382)
T ss_pred cccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHH
Confidence 2222111100 11222244589999999999999999999999998 889999
Q ss_pred HHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhh
Q 037207 263 NSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMF 342 (1989)
Q Consensus 263 NsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlf 342 (1989)
|.+|.||.++|||.|+||||+||||+..||+||||||+.+|++|..+.+..+|.- ..+
T Consensus 2096 n~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~--------~~~-------------- 2153 (2382)
T KOG0890|consen 2096 NKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGKW--------MIK-------------- 2153 (2382)
T ss_pred HHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhcccc--------chh--------------
Confidence 9999999999999999999999999999999999999999999998876322110 000
Q ss_pred hhhhhHHHHhhcccccccCCCCChHHHHHHHHH-HHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcc
Q 037207 343 YGKIIPALKEKGIRRVISRRDWPHDVKRKVLLD-LMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILG 421 (1989)
Q Consensus 343 y~kl~~aLke~gi~~v~sR~dwp~evkreVF~e-L~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILG 421 (1989)
+ .++...++ ..-..+.+.++|.+ ++.+.|+ +|++||...+|.|..|+..|.+|+||+|||||||||||
T Consensus 2154 ~-----~l~~~~~~-----~~~~~~~~~~~F~~~~lpkfPP-VFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlG 2222 (2382)
T KOG0890|consen 2154 K-----QLRSVHLK-----KQMAKEEKGKVFREKLLPKFPP-VFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILG 2222 (2382)
T ss_pred h-----HHHHhcCc-----HhhcccchhhhhHHhhcccCCc-HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01100000 00012335566654 4555666 79999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccccCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHH
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLM 501 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~Lls 501 (1989)
|||||.+|||||-.||++||+||++.|+||..|++||.||||||+||+++|||+|+||.||.+||.||+.||+|++.||+
T Consensus 2223 LGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMS 2302 (2382)
T KOG0890|consen 2223 LGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMS 2302 (2382)
T ss_pred CccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCccccccCcCCccccCCccccchhhhhhhhhhhhhhhhhccchhhhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 037207 502 LLEVFVWDPLIEWTRGDFHDDAAIGGEERKGMELAVSLSLFASRVQEIRVPLQEHHDLLLATLPAVELALERFADVLSQY 581 (1989)
Q Consensus 502 LLEaFVrDPLvdW~~~~~~~~a~~~g~er~~me~~~slslf~sRv~ei~~~lq~~~d~l~~~l~~a~~aL~~~l~~L~~~ 581 (1989)
+|+.|+||||+.|.+....... +....+ ..++..|+.+||+... ..
T Consensus 2303 iL~tF~~DPlvew~~~~k~~s~-------~~i~e~------~~~i~~i~~rlqG~~~--~~------------------- 2348 (2382)
T KOG0890|consen 2303 ILETFVYDPLVEWNRPSKGRSP-------KKINED------RLVIGRIRGRLQGAMK--VD------------------- 2348 (2382)
T ss_pred HHHHHHhCchhhccCcccCCCc-------Ccccch------HHHHhHHHHHHhccCc--CC-------------------
Confidence 9999999999999975422111 000000 1233344444444332 11
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhcchhhhhhhH
Q 037207 582 ELASALFYRADQERSNLVLHETSTKSMVAEANCNAEKIRASF 623 (1989)
Q Consensus 582 e~~s~~~~~~~~~~~~~l~~E~~v~~Lv~eA~~~~enl~~~~ 623 (1989)
+-.++.|+.|..|+++||+ +||||.||
T Consensus 2349 --------------glPLSveGq~~~LI~eATs-eenL~~MY 2375 (2382)
T KOG0890|consen 2349 --------------GLPLSVEGQASSLIEEATS-EENLSEMY 2375 (2382)
T ss_pred --------------CCccchhhHHHHHHHHhcC-HHHHHHHH
Confidence 3457889999999999999 99999999
No 4
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-60 Score=621.98 Aligned_cols=340 Identities=30% Similarity=0.470 Sum_probs=294.1
Q ss_pred CCCcEEEEEEeceeEEecCCCCceEEEEEcH-----------------------HHHHHHHHHHhcCCccCCCccceecc
Q 037207 226 LRGIVTIASFSEEVSILSTKTKPKKLVILGQ-----------------------MLLQAVNSFLRSSPATRSHSLGIRYY 282 (1989)
Q Consensus 226 ~~~~VrI~rF~p~V~VL~SKqrPRRLtI~GS-----------------------QLFrLINsLL~kdkETRRR~L~IrtY 282 (1989)
....++|.+|.++|.+..+...||.|++.|| |+|+++|++|.++++|++|+|.||||
T Consensus 2437 ~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTY 2516 (2806)
T KOG0892|consen 2437 YGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTY 2516 (2806)
T ss_pred cCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEE
Confidence 4578999999999999999999999999998 99999999999999999999999999
Q ss_pred eeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCC
Q 037207 283 SVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRR 362 (1989)
Q Consensus 283 sVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~ 362 (1989)
+||||+|++|+||||.|++||++..-. +. +..+..++|.+.-+.+....+.+..
T Consensus 2517 KVvPls~~sGvlEwv~~tiplgeyLv~----------------~~--~gah~ry~p~d~s~~~crk~m~~~q-------- 2570 (2806)
T KOG0892|consen 2517 KVIPLSPKAGVLEWVTNTIPLGEYLVV----------------ES--GGAHKRYRPNDWSLSKCRKLMSEVQ-------- 2570 (2806)
T ss_pred eeeecCcccceeecccCCeehhhhhcc----------------cC--CccccccCCCCCChHHHHHHHHHHh--------
Confidence 999999999999999999999887642 11 2345567888888877766665542
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEE
Q 037207 363 DWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHI 442 (1989)
Q Consensus 363 dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHI 442 (1989)
.-+.+.|+++|.++|+++.+ +|+.++.-++++|.+|+++|.+||+|+|+.|||||||||||||..|||||..||+||||
T Consensus 2571 ~k~~E~r~k~y~~vc~n~~P-vfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHI 2649 (2806)
T KOG0892|consen 2571 KKSLETRLKAYDKVCRNIRP-VFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHI 2649 (2806)
T ss_pred cccHHHHHHHHHHHHhhchH-HHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEE
Confidence 23678999999999999765 58888889999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccccCcCCc
Q 037207 443 DYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTRGDFHDD 522 (1989)
Q Consensus 443 DFG~cFekGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~~~~~~~ 522 (1989)
|||++||+|+.+|.||.|||||||.||+.||.+||||+||.|||.||.+||++++.|+++||+|+||||++|.......-
T Consensus 2650 DlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~ 2729 (2806)
T KOG0892|consen 2650 DLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKAL 2729 (2806)
T ss_pred eeeeehhcCCcCCCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987653221
Q ss_pred cccCCccccchhhhhhhhhhhhhhhhhccchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037207 523 AAIGGEERKGMELAVSLSLFASRVQEIRVPLQEHHDLLLATLPAVELALERFADVLSQYELASALFYRADQERSNLVLHE 602 (1989)
Q Consensus 523 a~~~g~er~~me~~~slslf~sRv~ei~~~lq~~~d~l~~~l~~a~~aL~~~l~~L~~~e~~s~~~~~~~~~~~~~l~~E 602 (1989)
.... + ++ +--..+..+....-++-..|++++++..++|.++|+ +..+++|
T Consensus 2730 ~~q~--~---e~-------------~e~~n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~------------g~~~sVe 2779 (2806)
T KOG0892|consen 2730 KKQK--E---ED-------------EENFNLSGNITEDASNDRNAVRALMRAQRKLDGVEQ------------GTMLSVE 2779 (2806)
T ss_pred HHHH--h---hc-------------chhcccccchhhhhccchHHHHHHHHHHHHhhhhhc------------cccccHH
Confidence 1110 0 00 000112223333344456789999999999999977 6778899
Q ss_pred hhHHHHHHHHhcchhhhhhhH
Q 037207 603 TSTKSMVAEANCNAEKIRASF 623 (1989)
Q Consensus 603 ~~v~~Lv~eA~~~~enl~~~~ 623 (1989)
++|+.|++.|++ |.||+.||
T Consensus 2780 ~qv~~LIqqA~d-psnLs~~f 2799 (2806)
T KOG0892|consen 2780 AQVQELIQQATD-PSNLSLMF 2799 (2806)
T ss_pred HHHHHHHHHhcC-chhhhhhc
Confidence 999999999999 99999998
No 5
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.7e-59 Score=635.67 Aligned_cols=492 Identities=27% Similarity=0.394 Sum_probs=381.0
Q ss_pred ccccCCceeEeceeccccccccCChHHHHHHHHHHHhhchhHHHHHHHHHHHHhh-hhhccHHHHHHHHHHHHHHHHHHH
Q 037207 2 LAKLSPWCIVYPTLVDVNAYEERPSEELQHILGCLRELYPRLIQDVELMINELGN-LTVLWEELWLSTLQDLHADVMRRI 80 (1989)
Q Consensus 2 IG~~~PQAVvYPL~V~~~s~~~~~se~a~~Il~~Lr~~hP~LV~ev~l~v~ELiR-IavLW~E~Wl~~L~qL~~dv~rRl 80 (1989)
+|+.||||++||++++.++........+..+....+.+.|.++.+.....+|..+ ..+||++.|+..|.+++.
T Consensus 1575 ~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~~~~l~q~~~------ 1648 (2105)
T COG5032 1575 IGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRIAYPLLHLLFEPILAQLLS------ 1648 (2105)
T ss_pred hhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhhhhHHHHHHHHHH------
Confidence 7999999999999988776666566666779999999999999999999999999 789999999999988642
Q ss_pred HHHHHHHHHHHhcccCCHHHHhhhhHHHHHHhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHhhc--CCc
Q 037207 81 NVLKEEAARIAENATLSQSEKKKINAAKYSAMMAPIVVALERRLASTSRKPETPHEIWFHEEFGEQLKSAILNFK--TPP 158 (1989)
Q Consensus 81 ~~L~eEaaRl~~n~~Ls~~eK~~i~~~k~~aim~Piv~~Le~~~a~Ts~~peTphE~~F~k~yg~~L~~Aie~lk--~~~ 158 (1989)
|+. ....+ ...+..+-.|++...+ ..|.+..+..|+..++..+..+....- ...
T Consensus 1649 --------r~~-----~~~~~----i~~~~~~~~~l~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 1704 (2105)
T COG5032 1649 --------RLS-----SENNK----ISVALLIDKPLHEERE-------NFPSGLSLSSFQSSFLKELIKKSPRKIRKKFK 1704 (2105)
T ss_pred --------Hhc-----ccchH----HHHHHHHHHHHHHHhc-------cccccccchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 221 00000 1123334556555443 334433367777777777666551111 011
Q ss_pred cccchHHHHHHH----HHHHHHHHHhhhccCcccccccChhhhccCC-CCCCCCCcccccccccCCCCccccCCCcEEEE
Q 037207 159 ASAAALGDVWRP----FDNIAASLASHQRKSSVSLSEVAPQLSLLSS-SDVPMPGFEKQVATSESDGGLTATLRGIVTIA 233 (1989)
Q Consensus 159 ~~~~~L~e~W~~----fk~I~k~L~~~~kkssL~LedISP~La~fs~-seIeVPGqY~~~~~s~~d~~~t~~~~~~VrI~ 233 (1989)
.....+...|+. ++++.+.+.... ......++|.+..++. .++++||+|.. ..+.|+|.
T Consensus 1705 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~P~~~~~-------------~k~~v~I~ 1768 (2105)
T COG5032 1705 IDISLLNLSRKLYISVLRSIRKRLKRLL---ELRLKKVSPKLLLFHAFLEIKLPGQYLL-------------DKPFVLIE 1768 (2105)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhHHHH---HHHhcccCHHHHhccccccccCCccccc-------------CCCCceEE
Confidence 122233344444 455555554432 2333449999999998 89999999864 25789999
Q ss_pred EEeceeEEecC-CCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecCC
Q 037207 234 SFSEEVSILST-KTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGR 290 (1989)
Q Consensus 234 rF~p~V~VL~S-KqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~ 290 (1989)
+|.|++.++++ +++|||++++|+ ||+++||++|.++++|+||++.|++|+|||+||+
T Consensus 1769 ~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~ 1848 (2105)
T COG5032 1769 RFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPG 1848 (2105)
T ss_pred EecCceeeeecccccceEEEEEecCCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCC
Confidence 99999999988 899999999998 9999999999999999999999999999999999
Q ss_pred cceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHHH
Q 037207 291 AGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKR 370 (1989)
Q Consensus 291 sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkr 370 (1989)
+|+||||||++||++|.++++.+.++..... .++.+..+.. ....+.
T Consensus 1849 ~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~----------------------~~~~~~~~~~-----------~~~~~~ 1895 (2105)
T COG5032 1849 SGIIEWVPNSDTLHSILREYHKRKNISIDQE----------------------KKLAARLDNL-----------KLLLKD 1895 (2105)
T ss_pred cceEEEecCcchHHHHHHHHhhhcCCChhHH----------------------hhhhhhhhhh-----------cccchh
Confidence 9999999999999999999998765422111 0111111111 123466
Q ss_pred HHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEeccccccc
Q 037207 371 KVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 371 eVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
++|.....++| .+|++|||..++++.+||.+|+||++|+|+|||+|||||+|||||+|||||+.||+|+|||||+||+.
T Consensus 1896 ~~~~~~~~~~~-~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~ 1974 (2105)
T COG5032 1896 EFFTKATLKSP-PVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFN 1974 (2105)
T ss_pred HHhhhhhcCCC-chHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhc
Confidence 77777778889 89999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred -CCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccccCcCCccccCCcc
Q 037207 451 -GQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTRGDFHDDAAIGGEE 529 (1989)
Q Consensus 451 -GkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~~~~~~~a~~~g~e 529 (1989)
++.+++||.|||||||||+++||++|+||.||.+|+.++++||+|.+.|++++++|++|||++|.......
T Consensus 1975 ~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~-------- 2046 (2105)
T COG5032 1975 APGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFR-------- 2046 (2105)
T ss_pred CCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcccc--------
Confidence 58999999999999999999999999999999999999999999999999999999999999999221110
Q ss_pred ccchhhhhhhhhhhhhhhhhccchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 037207 530 RKGMELAVSLSLFASRVQEIRVPLQEHHDLLLATLPAVELALERFADVLSQYELASALFYRADQERSNLVLHETSTKSMV 609 (1989)
Q Consensus 530 r~~me~~~slslf~sRv~ei~~~lq~~~d~l~~~l~~a~~aL~~~l~~L~~~e~~s~~~~~~~~~~~~~l~~E~~v~~Lv 609 (1989)
.++. ..+...++|+-.++.+. +..+...++++.++..++
T Consensus 2047 -~~~~------------------------------~~~~~v~~rf~~kl~~~----------~~~~~~~l~I~~sv~~li 2085 (2105)
T COG5032 2047 -EIQN------------------------------NEIVNVLERFRLKLSEK----------DAEKFVDLLINKSVESLI 2085 (2105)
T ss_pred -chHH------------------------------HHHHHHHHHHHHHhhhh----------hhhhhcCCcHHHHHHHHH
Confidence 0000 01122334444433332 233446678999999999
Q ss_pred HHHhcchhhhhhhH
Q 037207 610 AEANCNAEKIRASF 623 (1989)
Q Consensus 610 ~eA~~~~enl~~~~ 623 (1989)
..|++ +.|+|.||
T Consensus 2086 ~~a~d-~~~L~~~y 2098 (2105)
T COG5032 2086 TQATD-PFQLATMY 2098 (2105)
T ss_pred HHHcC-HHHHHhhc
Confidence 99999 99999998
No 6
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=1.1e-59 Score=540.68 Aligned_cols=256 Identities=37% Similarity=0.677 Sum_probs=229.0
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
|.+|+|+|.|++|+++||||+|+|+ |||++||.+|.++++|++|+|.+++|.|||+++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 6799999999999999999999997 999999999999999999999999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+|++||.+|++.|+.+.++.. ..+...+..+..+ .........|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-----------~~~~~~~~~k 132 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPL-----------------NLEHRLMELKSAP-----------DYDNLTLIQK 132 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCCh-----------------hHHHHHHHHHhhh-----------hhhhCCHHHH
Confidence 99999999999999999999987542110 0000111000000 0112344678
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
.++|+++++++|+++|++++|..++++..|+.+|++|++|+|+|||+|||||||||||+|||||+.||+|+|||||++|+
T Consensus 133 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~ 212 (280)
T cd05169 133 LEVFEYALNNTPGDDLRKILWLKSPSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFE 212 (280)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcccc
Q 037207 450 KGQ-RLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWT 515 (1989)
Q Consensus 450 kGk-rL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~ 515 (1989)
+|+ .+++||.|||||||||+++||+.|++|.|+.+|+.++++||+|++.|+++|++|+||||++|.
T Consensus 213 ~~~~~~~~pE~VPFRLT~~~~~~lG~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 213 VAMHREKFPEKVPFRLTRMLVNALGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred hccccCCCCCcCCcccCHHHHHHhCCCCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 996 468999999999999999999999999999999999999999999999999999999999996
No 7
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=2e-59 Score=538.76 Aligned_cols=256 Identities=37% Similarity=0.614 Sum_probs=230.3
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
|.+|.|.|.|++||++||||+|+|+ |||++||++|.++++|++|+|.+++|.|||||+
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 5689999999999999999999998 999999999999999999999999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+|++||++||+.++...+ ...|.+....+....+++. ...+.+.+
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~r 133 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHE-------------------RYRPGDWTARKCRKAMAEV--------QKESNEER 133 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhccc-------------------ccCccchhHHHHHHHHHHh--------hcCCHHHH
Confidence 99999999999999999998752110 0123333333333333221 12356789
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+++|+++++++++ +|++|||..++++++||.+|++|++|+|+|||+|||||||||||+||||++.||+|+|||||++|+
T Consensus 134 ~~~f~~i~~~~~p-~l~~~f~~~~~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~ 212 (279)
T cd05171 134 LKVFLKICKNFRP-VFRYFFLEKFLDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFE 212 (279)
T ss_pred HHHHHHHHHhCcH-HHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhc
Confidence 9999999999776 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcccc
Q 037207 450 KGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWT 515 (1989)
Q Consensus 450 kGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~ 515 (1989)
+|+.+++||.|||||||||+++||+.|++|.|+.+|++++++||++++.|+++|++|+||||++|.
T Consensus 213 ~~~~l~~pe~vPFRLT~~~~~~lg~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 213 QGKILPVPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred cCcCCCCCCcCChhhhHHHHHHhCCCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 997799999999999999999999999999999999999999999999999999999999999997
No 8
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=4e-59 Score=529.91 Aligned_cols=226 Identities=26% Similarity=0.426 Sum_probs=215.1
Q ss_pred EEEEeceeEEe-cCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCccceecceeeE
Q 037207 232 IASFSEEVSIL-STKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTP 286 (1989)
Q Consensus 232 I~rF~p~V~VL-~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIP 286 (1989)
|++|.|+|+|+ .++++||||+|+|+ |||++||++|.++++|++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57999999987 68899999999998 999999999999999999999999999999
Q ss_pred ecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCCh
Q 037207 287 ISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPH 366 (1989)
Q Consensus 287 LSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~ 366 (1989)
|++++|||||++++.||+++|+.
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~--------------------------------------------------------- 103 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED--------------------------------------------------------- 103 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH---------------------------------------------------------
Confidence 99999999999999999988742
Q ss_pred HHHHHHHHHHHhc-cchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecc
Q 037207 367 DVKRKVLLDLMKE-VPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYN 445 (1989)
Q Consensus 367 evkreVF~eL~ke-tP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG 445 (1989)
|+++|.+++++ +|+++|++|+|..++++++||.+|++||+|+|+|||+|||||||||||+||||+..||+|+|||||
T Consensus 104 --~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~ 181 (253)
T cd05163 104 --KLEIYNEIQKDMVPDTILKNYILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLL 181 (253)
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeee
Confidence 34567788887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCC-CcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccc
Q 037207 446 VCFDKGQR-LKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTR 516 (1989)
Q Consensus 446 ~cFekGkr-L~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~ 516 (1989)
++|++|+. +++||.|||||||||+++||++|+||.|+.+|+++++|||++++.|+++|++|+||||++|.+
T Consensus 182 ~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~~ 253 (253)
T cd05163 182 PSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWHK 253 (253)
T ss_pred eeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhcC
Confidence 99999965 489999999999999999999999999999999999999999999999999999999999973
No 9
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=5.5e-56 Score=499.59 Aligned_cols=212 Identities=34% Similarity=0.628 Sum_probs=202.4
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
|.+|.++|.|++||++||||+|+|+ |||++||.+|.++++|++|++.+++|.|||+++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 6789999999999999999999997 999999999999999999999999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+++.||++|+++
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~------------------------------------------------------------ 100 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN------------------------------------------------------------ 100 (235)
T ss_pred CCceEEEcCCchhHHHHHhh------------------------------------------------------------
Confidence 99999999999999988742
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+.|++++|..++++++||.+|++|++|+|+||++|||||||||||+||||++.||+|+|||||++|+
T Consensus 101 -------------~~l~~~~~~~~~~~~~~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~ 167 (235)
T cd05172 101 -------------DLLRRALVEMSASPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFG 167 (235)
T ss_pred -------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhc
Confidence 2356678888899999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccc
Q 037207 450 KGQ-RLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTR 516 (1989)
Q Consensus 450 kGk-rL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~ 516 (1989)
+++ .+++||+|||||||||+++||+.|++|.|+.+|+.++++||+|++.|+++|++|+|||+++|..
T Consensus 168 ~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~~ 235 (235)
T cd05172 168 TATQFLPIPELMPFRLTPQFVNLMEPMKADGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWKN 235 (235)
T ss_pred cCCccCCCCCCCCeeeCHHHHHHhCCCCCCChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhcC
Confidence 996 5999999999999999999999999999999999999999999999999999999999999973
No 10
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=4.5e-54 Score=484.64 Aligned_cols=215 Identities=43% Similarity=0.772 Sum_probs=204.1
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
|.+|.+.|.|++|+++||+|+|+|+ |||+++|.+|.++++|+++++.+++|.|||+++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 6789999999999999999999997 999999999999999999999999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+|++||++|+++++
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~---------------------------------------------------------- 102 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIY---------------------------------------------------------- 102 (237)
T ss_pred CCceEEECCCCccHHHHHHHhC----------------------------------------------------------
Confidence 9999999999999999987542
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+..|++|++..+++++.|+.+|++|+.|+|+||++|||||||||||+||||++.||+++|||||++|+
T Consensus 103 ------------~~~l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~ 170 (237)
T cd00892 103 ------------PPVFHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFD 170 (237)
T ss_pred ------------CHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhc
Confidence 01345677778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccc
Q 037207 450 KGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTR 516 (1989)
Q Consensus 450 kGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~ 516 (1989)
+|+.+++||+|||||||||+++||+.|++|.|+.+|+.++++||+|++.|+++|++|+||||++|.+
T Consensus 171 ~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~~ 237 (237)
T cd00892 171 KGETLEVPERVPFRLTQNMVDAMGVLGVEGLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWSK 237 (237)
T ss_pred ccccCCCCCCCCcccCHHHHHHhCCCCCCCchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhccC
Confidence 9988999999999999999999999999999999999999999999999999999999999999974
No 11
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=7.4e-51 Score=454.70 Aligned_cols=200 Identities=47% Similarity=0.836 Sum_probs=191.2
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
|.+|++.|.|++||++||||+|+|+ |+|+++|.+|.++++|+++++.+++|.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 6789999999999999999999997 999999999999999999999999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+|+.||+++
T Consensus 81 ~~GliE~v~~~~sl~~~--------------------------------------------------------------- 97 (222)
T cd05164 81 RSGLIEWVEGTTTLKPV--------------------------------------------------------------- 97 (222)
T ss_pred CCceEEEcCCcchHHHH---------------------------------------------------------------
Confidence 99999999999997633
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
|++++|..++++++||.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|+
T Consensus 98 ---------------l~~~~~~~~~~~~~~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~ 162 (222)
T cd05164 98 ---------------LKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFE 162 (222)
T ss_pred ---------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhc
Confidence 34456777888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhC
Q 037207 450 KGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWD 509 (1989)
Q Consensus 450 kGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrD 509 (1989)
+++.+++||.|||||||||+++||+.|++|.|+.+|+++++|||+|++.|+++|++|+||
T Consensus 163 ~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 163 KGKTLPVPELVPFRLTRNIINGMGITGVEGLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred cCCCCCCCCCCCEEeCHHHHHHhCCCCcCChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 998889999999999999999999999999999999999999999999999999999998
No 12
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.6e-46 Score=416.92 Aligned_cols=197 Identities=35% Similarity=0.568 Sum_probs=185.4
Q ss_pred EEEEeceeEEecCCCCceEEEEEcH----------------------HHHHHHHHHHhcCCccCCCccceecceeeEecC
Q 037207 232 IASFSEEVSILSTKTKPKKLVILGQ----------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISG 289 (1989)
Q Consensus 232 I~rF~p~V~VL~SKqrPRRLtI~GS----------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp 289 (1989)
+.+|.+.+.|++|+++||+|.|+|+ |+++++|.+|.+++ ++++.+++|.|||+++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 3578899999999999999999997 99999999999876 7899999999999999
Q ss_pred CcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHH
Q 037207 290 RAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVK 369 (1989)
Q Consensus 290 ~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evk 369 (1989)
++||||||+++.|++
T Consensus 78 ~~GlIE~v~~~~sl~----------------------------------------------------------------- 92 (219)
T cd00142 78 RSGLIEVVPGSVTLE----------------------------------------------------------------- 92 (219)
T ss_pred CceEEEEeCCCchhH-----------------------------------------------------------------
Confidence 999999999999875
Q ss_pred HHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 370 RKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 370 reVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+.|++|+|..++++++||.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|+
T Consensus 93 -------------~~l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~ 159 (219)
T cd00142 93 -------------DDLSKWLKRKSPDEDEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFG 159 (219)
T ss_pred -------------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhC
Confidence 1345567777888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhChhHHHHHHHHHhhC
Q 037207 450 KGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKNKDILLMLLEVFVWD 509 (1989)
Q Consensus 450 kGkrL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRknkd~LlsLLEaFVrD 509 (1989)
+++.+..||+|||||||||+++||+.|++|.|+..|+.++++||+|++.|+++|++|++|
T Consensus 160 ~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 160 KRKKFLGRERVPFRLTPDLVNALGTGGVFGPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred cCcCCCCCCCCCEeccHHHHHHhCCcchhhhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 998777799999999999999999999999999999999999999999999999999987
No 13
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=4.4e-45 Score=402.47 Aligned_cols=182 Identities=35% Similarity=0.588 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
|+|+++|.+|.++++++++++.+++|.|+|+++++||||||+|+.|+++|+.
T Consensus 18 ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~il~---------------------------- 69 (202)
T smart00146 18 QLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQILY---------------------------- 69 (202)
T ss_pred HHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999877633
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMV 416 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmV 416 (1989)
+|+|..++++..||.+|++|++|+|+||++
T Consensus 70 --------------------------------------------------~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~ 99 (202)
T smart00146 70 --------------------------------------------------DWFKKKFPDPEDYFEARKNFTRSCAGYSVI 99 (202)
T ss_pred --------------------------------------------------HHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566778999999999999999999
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEecccccccCCCCcCC-CcCCccccHHHHHHhccCCccchHHHHHHHHHHHHhhC
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRLKVP-EIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVLRKN 495 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL~vP-E~VPFRLTrNIv~ALGptGVEG~FRssceatmr~LRkn 495 (1989)
|||||||||||+||||+ +||+|+|||||++|++++.+..| |.|||||||||+++||+.|++|.|+..|+.++++||++
T Consensus 100 ~YilglgDRh~~NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~ 178 (202)
T smart00146 100 TYILGLGDRHNDNIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKN 178 (202)
T ss_pred HHHhcCCCCCCCcEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcC
Confidence 99999999999999999 89999999999999999765555 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCcccccc
Q 037207 496 KDILLMLLEVFVWDPLIEWTRG 517 (1989)
Q Consensus 496 kd~LlsLLEaFVrDPLvdW~~~ 517 (1989)
++.|+++|++|++||+.+|+..
T Consensus 179 ~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 179 SNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred HHHHHHHHHHHcCCCChhhcCC
Confidence 9999999999999999999864
No 14
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=5.4e-44 Score=398.35 Aligned_cols=212 Identities=40% Similarity=0.728 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
|+|+++|.+|.+++++++ +++|.|+|+++++||||||+++.||.+|++.++.+.+.. . .
T Consensus 20 ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~---------------~--~ 78 (235)
T PF00454_consen 20 QLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHS---------------N--D 78 (235)
T ss_dssp HHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTT---------------C--S
T ss_pred HHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhcccccccccc---------------c--c
Confidence 999999999999987765 999999999999999999999999999999987643110 0 0
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMV 416 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmV 416 (1989)
.+...+ |.. .+....+.+|++.++++|+..++++++||.+|++|++|+|.+|++
T Consensus 79 ~~~~~~---------------------~~~-----~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~ 132 (235)
T PF00454_consen 79 NPSRKY---------------------KAK-----LFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSIL 132 (235)
T ss_dssp C--------------------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc---------------------ccc-----cccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhc
Confidence 000000 000 033445668899999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEecccccccCCCCcCCCcCCccccHHHHHHh----ccCCccchHHHHHHHHHHHH
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAAL----GLTGIEGTFRANCEAVVSVL 492 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL~vPE~VPFRLTrNIv~AL----GptGVEG~FRssceatmr~L 492 (1989)
+||||+|||||+||||+..||+|+|||||+||+ ++.+++||.|||||||||+++| |+.|++|.|+.+|+.++++|
T Consensus 133 ~yilg~gDRh~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~l 211 (235)
T PF00454_consen 133 DYILGLGDRHPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRAL 211 (235)
T ss_dssp HHHHT-CS--TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHH
T ss_pred eEEEeecCCCchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8788999999999999999999 99999999999999999999
Q ss_pred hhChhHHHHHHHHHhhCCCccccc
Q 037207 493 RKNKDILLMLLEVFVWDPLIEWTR 516 (1989)
Q Consensus 493 Rknkd~LlsLLEaFVrDPLvdW~~ 516 (1989)
|+|++.|+++|++|++||+++|++
T Consensus 212 r~~~~~l~~ll~~~~~d~l~~w~~ 235 (235)
T PF00454_consen 212 RRNKDLLLSLLELFLRDPLIDWRK 235 (235)
T ss_dssp HHTHHHHHHHHHHTTTSCSTTSS-
T ss_pred hcChHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999974
No 15
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=7.3e-43 Score=412.35 Aligned_cols=222 Identities=22% Similarity=0.353 Sum_probs=193.7
Q ss_pred CCCcEEEEEEec-eeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCcccee
Q 037207 226 LRGIVTIASFSE-EVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIR 280 (1989)
Q Consensus 226 ~~~~VrI~rF~p-~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~Ir 280 (1989)
..+.++|.+|.+ .+.|++|+++|++|+|.|+ |++++||.+|.++ ..+|.++
T Consensus 53 ~~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~----~ldl~l~ 128 (352)
T cd00891 53 LDPRLEIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKE----GLDLRMT 128 (352)
T ss_pred CCCceEEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHC----CCCeeeE
Confidence 345689999985 6999999999999999975 9999999999876 3689999
Q ss_pred cceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhccccccc
Q 037207 281 YYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVIS 360 (1989)
Q Consensus 281 tYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~s 360 (1989)
+|.|+|+++++||||||+|+.|+++|.+++.... + .|
T Consensus 129 ~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~---------------~----------~~------------------ 165 (352)
T cd00891 129 PYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVG---------------G----------AF------------------ 165 (352)
T ss_pred EEEEEEccCCceEEEEeCCCccHHHHHHhcCccc---------------c----------cc------------------
Confidence 9999999999999999999999999987542100 0 00
Q ss_pred CCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEE
Q 037207 361 RRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIV 440 (1989)
Q Consensus 361 R~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVV 440 (1989)
....|++|+....+++..|...|.+|++|+|+|||+||||||||||++||||| .+|+++
T Consensus 166 --------------------~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~ 224 (352)
T cd00891 166 --------------------KDNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLF 224 (352)
T ss_pred --------------------ccchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEE
Confidence 00124556666667778899999999999999999999999999999999999 699999
Q ss_pred EEecccccccCC-CCc-CCCcCCccccHHHHHHhccCCcc--chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcccc
Q 037207 441 HIDYNVCFDKGQ-RLK-VPEIVPFRLTQTIEAALGLTGIE--GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWT 515 (1989)
Q Consensus 441 HIDFG~cFekGk-rL~-vPE~VPFRLTrNIv~ALGptGVE--G~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~ 515 (1989)
|||||++|+.++ .+. .||.||||||++|+++||+.|.+ |.|+..|+.++.+||+|.+.|++++++|+++++-+|.
T Consensus 225 HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 225 HIDFGHFLGNFKKKFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred EEehHHhhccCCccCCCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 999999999763 333 69999999999999999999876 9999999999999999999999999999999998886
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1e-42 Score=410.86 Aligned_cols=220 Identities=17% Similarity=0.282 Sum_probs=190.6
Q ss_pred CcEEEEEEe-ceeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCccceecc
Q 037207 228 GIVTIASFS-EEVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIRYY 282 (1989)
Q Consensus 228 ~~VrI~rF~-p~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~IrtY 282 (1989)
+.++|.++. +.+.|++|+++|++|+|.|+ |++++||.+|+++ ..+|.+++|
T Consensus 55 p~~~~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~----~ldL~l~~Y 130 (353)
T cd05166 55 PALDVKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQE----GLDLRMITF 130 (353)
T ss_pred CceEEEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhC----CCCceeEEE
Confidence 346788887 68999999999999999975 9999999999876 468999999
Q ss_pred eeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCC
Q 037207 283 SVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRR 362 (1989)
Q Consensus 283 sVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~ 362 (1989)
.|+|+|+++||||||+|+.|+.+|.+++.. . + . +
T Consensus 131 ~vip~~~~~GlIE~V~ns~tl~~I~~~~g~--------------~--~----------~-~------------------- 164 (353)
T cd05166 131 RCLSTGYDRGMVELVPDAETLRKIQVEEGL--------------T--G----------S-F------------------- 164 (353)
T ss_pred EEEEcCCCcceEEEeCCchhHHHHHHHhCc--------------c--c----------c-c-------------------
Confidence 999999999999999999999998754210 0 0 0 0
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEE
Q 037207 363 DWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHI 442 (1989)
Q Consensus 363 dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHI 442 (1989)
....+++|++...+++..|...|.+|++|+|+|||+||||||||||++||||+ .+|+++||
T Consensus 165 ------------------~~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HI 225 (353)
T cd05166 165 ------------------KDRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHI 225 (353)
T ss_pred ------------------cchhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEE
Confidence 01135667777778888999999999999999999999999999999999999 79999999
Q ss_pred ecccccccCCCC--cCCCcCCccccHHHHHHhccCC----ccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccccc
Q 037207 443 DYNVCFDKGQRL--KVPEIVPFRLTQTIEAALGLTG----IEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWTR 516 (1989)
Q Consensus 443 DFG~cFekGkrL--~vPE~VPFRLTrNIv~ALGptG----VEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~~ 516 (1989)
|||++|++++.. -.||+||||||++|+++||..| ..|.|+..|+.++.+||+|.+.|++++++|+++++.+|..
T Consensus 226 DFG~~lg~~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~ 305 (353)
T cd05166 226 DFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSK 305 (353)
T ss_pred eeHHhcccccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCc
Confidence 999999987432 2489999999999999998653 3579999999999999999999999999999999999973
No 17
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=1e-41 Score=402.20 Aligned_cols=210 Identities=23% Similarity=0.432 Sum_probs=181.9
Q ss_pred CCCcEEEEEEec-eeEEecCCCCceEEEEEcH-------------------------HHHHHHHHHHhcCCccCCCccce
Q 037207 226 LRGIVTIASFSE-EVSILSTKTKPKKLVILGQ-------------------------MLLQAVNSFLRSSPATRSHSLGI 279 (1989)
Q Consensus 226 ~~~~VrI~rF~p-~V~VL~SKqrPRRLtI~GS-------------------------QLFrLINsLL~kdkETRRR~L~I 279 (1989)
.++.++|.++.+ .+.|++|+++|++|+|.|+ |++++||.+|.++ .++|.+
T Consensus 57 ~dp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~----~ldl~l 132 (350)
T cd00896 57 LDPSIEITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKE----NLDLKL 132 (350)
T ss_pred CCCCeEEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhC----CCCcee
Confidence 345688888875 7999999999999999864 9999999999986 378999
Q ss_pred ecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccc
Q 037207 280 RYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVI 359 (1989)
Q Consensus 280 rtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~ 359 (1989)
++|.|||+++++||||||+ +.|+.+|.+++.. +.+ |+
T Consensus 133 ~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~~---l~~-----------------------~l---------------- 169 (350)
T cd00896 133 TPYKVLATSPTDGLVEFIP-SVTLASILKKYGG---ILN-----------------------YL---------------- 169 (350)
T ss_pred EEEEEEEcCCCCcceEEEe-cccHHHHHHHHHH---HHH-----------------------HH----------------
Confidence 9999999999999999999 9999999887532 100 00
Q ss_pred cCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChh----HHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecC
Q 037207 360 SRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFK----AFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFS 435 (1989)
Q Consensus 360 sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse----~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~ 435 (1989)
+...++.. .|...+.+|++|+|+|||+||||||||||++||||+ .
T Consensus 170 ------------------------------~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~ 218 (350)
T cd00896 170 ------------------------------RKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-K 218 (350)
T ss_pred ------------------------------HHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-C
Confidence 00011111 134578999999999999999999999999999999 6
Q ss_pred CCcEEEEecccccccCCCCcCCCcCCccccHHHHHHhccCCccc--hHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcc
Q 037207 436 SGDIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIEG--TFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIE 513 (1989)
Q Consensus 436 TGeVVHIDFG~cFekGkrL~vPE~VPFRLTrNIv~ALGptGVEG--~FRssceatmr~LRknkd~LlsLLEaFVrDPLvd 513 (1989)
+|+++|||||++|++++ .|++||||||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++|+-+
T Consensus 219 ~G~~~HIDFG~ilg~~p---~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~ 295 (350)
T cd00896 219 DGKLFHIDFGYILGRDP---KPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPD 295 (350)
T ss_pred CCCEEEEEhHHhhCCCC---CCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcc
Confidence 99999999999999875 378899999999999999999999 9999999999999999999999999999999988
Q ss_pred ccc
Q 037207 514 WTR 516 (1989)
Q Consensus 514 W~~ 516 (1989)
|..
T Consensus 296 ~~~ 298 (350)
T cd00896 296 IAL 298 (350)
T ss_pred ccc
Confidence 874
No 18
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=2.4e-41 Score=399.54 Aligned_cols=222 Identities=21% Similarity=0.377 Sum_probs=188.5
Q ss_pred CCcEEEEEEec-eeEEecCCCCceEEEEEc--------H-------------------HHHHHHHHHHhcCCccCCCccc
Q 037207 227 RGIVTIASFSE-EVSILSTKTKPKKLVILG--------Q-------------------MLLQAVNSFLRSSPATRSHSLG 278 (1989)
Q Consensus 227 ~~~VrI~rF~p-~V~VL~SKqrPRRLtI~G--------S-------------------QLFrLINsLL~kdkETRRR~L~ 278 (1989)
++.++|.++.+ .+.|++|+++|++|+|.| . |++++||.+|+++ ..+|+
T Consensus 59 ~P~~~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~----~ldL~ 134 (366)
T cd05165 59 NPSLKLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEE----GLDLR 134 (366)
T ss_pred CCceeEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhC----CCCce
Confidence 45688999875 699999999999999985 2 9999999999886 46899
Q ss_pred eecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhccccc
Q 037207 279 IRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRV 358 (1989)
Q Consensus 279 IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v 358 (1989)
+++|.|+|+|+++||||||+|+.|+.+|.+.+... .. .. |
T Consensus 135 l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~------------------~~------~~-f--------------- 174 (366)
T cd05165 135 MLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGN------------------AT------AA-F--------------- 174 (366)
T ss_pred eEEEEEEEecCCceEEEEeCCchhHHHHHHhcccc------------------cc------cc-c---------------
Confidence 99999999999999999999999999997643100 00 00 0
Q ss_pred ccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCc
Q 037207 359 ISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGD 438 (1989)
Q Consensus 359 ~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGe 438 (1989)
.+..+.+|+...+++.+.|...+.+|++|+|+||++||||||||||++||||+ .||+
T Consensus 175 ----------------------~~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~-~~G~ 231 (366)
T cd05165 175 ----------------------KKEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVK-ETGQ 231 (366)
T ss_pred ----------------------CcHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEc-CCCC
Confidence 01123444444445567788899999999999999999999999999999999 5999
Q ss_pred EEEEecccccccCC-CCc-CCCcCCccccHHHHHHhccCCcc------chHHHHHHHHHHHHhhChhHHHHHHHHHhhCC
Q 037207 439 IVHIDYNVCFDKGQ-RLK-VPEIVPFRLTQTIEAALGLTGIE------GTFRANCEAVVSVLRKNKDILLMLLEVFVWDP 510 (1989)
Q Consensus 439 VVHIDFG~cFekGk-rL~-vPE~VPFRLTrNIv~ALGptGVE------G~FRssceatmr~LRknkd~LlsLLEaFVrDP 510 (1989)
+||||||++|+.++ .++ .||+||||||++|+++||+.|.+ |.|+..|+.++.+||+|.+.|++++++|+..+
T Consensus 232 l~HIDFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ 311 (366)
T cd05165 232 LFHIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSG 311 (366)
T ss_pred EEEEehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCC
Confidence 99999999998874 455 49999999999999999998876 99999999999999999999999999999888
Q ss_pred Ccccc
Q 037207 511 LIEWT 515 (1989)
Q Consensus 511 LvdW~ 515 (1989)
+-++.
T Consensus 312 ip~~~ 316 (366)
T cd05165 312 LPELT 316 (366)
T ss_pred CcccC
Confidence 87776
No 19
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.7e-41 Score=449.30 Aligned_cols=525 Identities=18% Similarity=0.263 Sum_probs=388.3
Q ss_pred CccccCCceeEeceeccccccc----------------cCChHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhccH-H
Q 037207 1 MLAKLSPWCIVYPTLVDVNAYE----------------ERPSEELQHILGCLRELYPRLIQDVELMINELGNLTVLWE-E 63 (1989)
Q Consensus 1 ~IG~~~PQAVvYPL~V~~~s~~----------------~~~se~a~~Il~~Lr~~hP~LV~ev~l~v~ELiRIavLW~-E 63 (1989)
+||+.|||||+||+..++.... +.+...-.+|+..-+..|| +.+.....++++. ..|+ +
T Consensus 2950 kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~~~p~~r~~~i~~~~r~~~p-~~~s~~~~ld~~~---~~w~~~ 3025 (3550)
T KOG0889|consen 2950 KIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDTTDPMGRPSKISQKQRNLHP-ILSSLEKILDSVQ---LVWERL 3025 (3550)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcHHHHHHHhhccCc-chhhHHhhhccch---hhHHHH
Confidence 4799999999999998764311 1122223467778888899 5666666666333 3366 5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhhHHHHHHhhHHHHHHHHHHHhhc--------CCCCCCh
Q 037207 64 LWLSTL-QDLHADVMRRINVLKEEAARIAENATLSQSEKKKINAAKYSAMMAPIVVALERRLAST--------SRKPETP 134 (1989)
Q Consensus 64 ~Wl~~L-~qL~~dv~rRl~~L~eEaaRl~~n~~Ls~~eK~~i~~~k~~aim~Piv~~Le~~~a~T--------s~~peTp 134 (1989)
.|+..+ .+++..+..++..+-++.....++.. .++.-+ .+.+.+- .......+ ...++.+
T Consensus 3026 ~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~--~e~~~r----~v~al~~-----~~~~~~~~r~~ivt~~~~~~~~~ 3094 (3550)
T KOG0889|consen 3026 FDLEEILKTAYQLLAKTLETLFDKIQARFKSTP--EEHALR----LVNALLN-----IDGIQNGNRLGIVTKNTKSLSDT 3094 (3550)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc--cHHHHH----HHHHHHH-----HhhhccccccccccccccCCcch
Confidence 565543 44556666666666665433222111 111111 1111111 01110010 1111111
Q ss_pred hHH-----------HHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHhhhcc--CcccccccChhhhccC-
Q 037207 135 HEI-----------WFHEEFGEQLKSAILNFKTPPASAAALGDVWRPFDNIAASLASHQRK--SSVSLSEVAPQLSLLS- 200 (1989)
Q Consensus 135 hE~-----------~F~k~yg~~L~~Aie~lk~~~~~~~~L~e~W~~fk~I~k~L~~~~kk--ssL~LedISP~La~fs- 200 (1989)
.+. .+.++|..+|..-.+. .....+++.++++++.|.+.++.+..+ +.+.||+.||+|++|+
T Consensus 3095 ~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~----~~~~~~l~~~i~klk~w~~~le~k~~~~pk~~~LE~~s~~L~~F~h 3170 (3550)
T KOG0889|consen 3095 EMNLNRFASNVLPDPVRKKFKEDFITNKDG----MKCICDLENYIDKLRKWRSRLESKVDRFPKKLNLEEKSRFLSNFSH 3170 (3550)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcccC----CcccccHHHHHHHHHHHHHHHHHHHhcccccccHHhhchHHhcccc
Confidence 111 1334444444333222 122347888999999999999987643 6789999999999998
Q ss_pred -CCCCCCCCcccccccccCCCCccccCCCcEEEEEEeceeEEe-cCCCCceEEEEEcH----------------------
Q 037207 201 -SSDVPMPGFEKQVATSESDGGLTATLRGIVTIASFSEEVSIL-STKTKPKKLVILGQ---------------------- 256 (1989)
Q Consensus 201 -~seIeVPGqY~~~~~s~~d~~~t~~~~~~VrI~rF~p~V~VL-~SKqrPRRLtI~GS---------------------- 256 (1989)
..+|||||||.-.. +.++++|+|.+|.|+|+++ ++.+..||++|+|+
T Consensus 3171 q~~evEiPGqyl~~k---------~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreEr 3241 (3550)
T KOG0889|consen 3171 QFDEVEIPGQYLLDK---------SNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREER 3241 (3550)
T ss_pred cCCcccCChHHhccc---------chhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHH
Confidence 48999999997632 3456899999999999999 56678999999997
Q ss_pred --HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 037207 257 --MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPP 334 (1989)
Q Consensus 257 --QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~ 334 (1989)
|+++++|..|.+++|++||++.+.++.+||++++++|+|.+|++.||++||+.+|++.++ .
T Consensus 3242 vlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~-----------------~ 3304 (3550)
T KOG0889|consen 3242 VLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNV-----------------S 3304 (3550)
T ss_pred HHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCC-----------------C
Confidence 999999999999999999999999999999999999999999999999999999998632 2
Q ss_pred CCCCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhc-cchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhH
Q 037207 335 VPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKE-VPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAM 413 (1989)
Q Consensus 335 vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ke-tP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVm 413 (1989)
.+.|...||+++....... ......+..++.+|+++... +|..++++|+...++++.++|.+|++|+.++|++
T Consensus 3305 ~D~~i~~~~d~l~~~~~~~------~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~ 3378 (3550)
T KOG0889|consen 3305 PDDPILLYFDRLAQAYSVL------IGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVF 3378 (3550)
T ss_pred cchhhHHHHHHHHHHHhhc------cCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHH
Confidence 2346667777754433211 12233567899999999887 8999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCceEEecCCCcEEEEecccccccC-CCCcCCCcCCccccHHHHHHhccCCccchHHHHHHHHHHHH
Q 037207 414 SMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKG-QRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVVSVL 492 (1989)
Q Consensus 414 SmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekG-krL~vPE~VPFRLTrNIv~ALGptGVEG~FRssceatmr~L 492 (1989)
+++.|++.+|.|.|+.+++.++||.|..-||-+..... ..+...|.|||||||||+.++|..|+||.+..++.++.+||
T Consensus 3379 ~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l 3458 (3550)
T KOG0889|consen 3379 SFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCL 3458 (3550)
T ss_pred HHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998554 67899999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHhhCCCccccccCcCCccccCCccccchhhhhhhhhhhhhhhhhccchhhhHHHHHhhhhHHHHHHH
Q 037207 493 RKNKDILLMLLEVFVWDPLIEWTRGDFHDDAAIGGEERKGMELAVSLSLFASRVQEIRVPLQEHHDLLLATLPAVELALE 572 (1989)
Q Consensus 493 Rknkd~LlsLLEaFVrDPLvdW~~~~~~~~a~~~g~er~~me~~~slslf~sRv~ei~~~lq~~~d~l~~~l~~a~~aL~ 572 (1989)
-++.+.+-..|..|+||+++.|........... ..+..++.+.+..++
T Consensus 3459 ~~p~~~l~~~l~~~~RDE~~~w~~~~~~~~~~~--------------------------------~~~~~~v~~~v~~i~ 3506 (3550)
T KOG0889|consen 3459 IEPDFELDPYLQLFFRDEIISWFKQQTKGVPAD--------------------------------PLLEEMVNSNVDLIM 3506 (3550)
T ss_pred hCCccchhHHHHHHHHHHHHHHhhccccCCcCC--------------------------------hhhhhhHHHHHHHHh
Confidence 999999999999999999999997543322211 011115566677777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhcchhhhhhh
Q 037207 573 RFADVLSQYELASALFYRADQERSNLVLHETSTKSMVAEANCNAEKIRAS 622 (1989)
Q Consensus 573 ~~l~~L~~~e~~s~~~~~~~~~~~~~l~~E~~v~~Lv~eA~~~~enl~~~ 622 (1989)
+++..+..... ++- ...+ ++-.+|+.|++ ++|+|+|
T Consensus 3507 rrv~~~~~~~~-------ge~----~~~~--t~~~lis~A~s-~~nLaqm 3542 (3550)
T KOG0889|consen 3507 RRVASLSSENS-------GEL----PDNQ--TVIDLISQATS-PDNLAQM 3542 (3550)
T ss_pred hhhhhhccccc-------cCC----CCCc--cHHHHHHHhcC-hhhhhcC
Confidence 77766655432 110 0001 47899999999 8999987
No 20
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=2.2e-41 Score=391.24 Aligned_cols=185 Identities=26% Similarity=0.353 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
|+|++||.+|+++ +++|.+++|.|+|+++++||||||+|+.|+++|.+++..+.
T Consensus 51 Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~~i~k~~~~~~---------------------- 104 (293)
T cd05168 51 QLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIPDTVSIDSLKKKLTSKF---------------------- 104 (293)
T ss_pred HHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeCCchhHHHHHHHhccCC----------------------
Confidence 9999999999975 57899999999999999999999999999999987642100
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCC-hhHHHHHHHHHHHhhhhHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEG-FKAFSLKLKRYSESVAAMSM 415 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~s-se~w~~~RknFTrSLAVmSm 415 (1989)
..|.+|++..+++ ++.|...|++|++|+|+|||
T Consensus 105 ----------------------------------------------~~l~~~f~~~~~~~~~~~~~a~~nF~~S~A~ySv 138 (293)
T cd05168 105 ----------------------------------------------KSLLDFFKKTFGDPSERFREAQKNFIESLAGYSL 138 (293)
T ss_pred ----------------------------------------------chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0122223222322 46788999999999999999
Q ss_pred HHhhcccCCCCCCceEEecCCCcEEEEecccccccCCCCcCCCcCCccccHHHHHHhccCCcc--chHHHHHHHHHHHHh
Q 037207 416 VGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIE--GTFRANCEAVVSVLR 493 (1989)
Q Consensus 416 VGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL~vPE~VPFRLTrNIv~ALGptGVE--G~FRssceatmr~LR 493 (1989)
+||||||||||++||||+. +|++||||||++|+.++....||.|||||||+|+++||+.+.+ |.|+..|+.++.+||
T Consensus 139 v~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR 217 (293)
T cd05168 139 ICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALR 217 (293)
T ss_pred HHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999996 9999999999999999766788999999999999999998887 899999999999999
Q ss_pred hChhHHHHHHHHHhhCCCccc
Q 037207 494 KNKDILLMLLEVFVWDPLIEW 514 (1989)
Q Consensus 494 knkd~LlsLLEaFVrDPLvdW 514 (1989)
+|++.|++++++|+++|-+..
T Consensus 218 ~~~~~il~ll~~m~~~~~lp~ 238 (293)
T cd05168 218 KHVDRIILLVEIMQSDSKLPC 238 (293)
T ss_pred hchHHHHHHHHHHccCCCCcc
Confidence 999999999999999974443
No 21
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.3e-40 Score=391.92 Aligned_cols=222 Identities=20% Similarity=0.352 Sum_probs=193.0
Q ss_pred CCCcEEEEEEec-eeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCcccee
Q 037207 226 LRGIVTIASFSE-EVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIR 280 (1989)
Q Consensus 226 ~~~~VrI~rF~p-~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~Ir 280 (1989)
.++.++|.+|.+ .+.|++|+++|++|+|.|+ |++++||.+|.++ ..+|+++
T Consensus 54 l~P~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~----~ldl~l~ 129 (354)
T cd05177 54 LNPALRVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQE----GLDMQMI 129 (354)
T ss_pred CCCCeEEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHc----CCCceEE
Confidence 346689999996 8999999999999999864 9999999999986 4789999
Q ss_pred cceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhccccccc
Q 037207 281 YYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVIS 360 (1989)
Q Consensus 281 tYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~s 360 (1989)
+|.|+|+|+++||||||||+.|+.+|.+.+... ..+ +
T Consensus 130 pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~--------------------------~~~--------~--------- 166 (354)
T cd05177 130 IYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLI--------------------------GPL--------K--------- 166 (354)
T ss_pred EEEEEecCCCceEEEEeCChHhHHHHHHhhCCC--------------------------ccc--------c---------
Confidence 999999999999999999999999998653100 000 0
Q ss_pred CCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEE
Q 037207 361 RRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIV 440 (1989)
Q Consensus 361 R~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVV 440 (1989)
.+.+.+|++...++...|...+.+|++|+|+|||+||||||||||++||||+ .||+++
T Consensus 167 ---------------------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~ 224 (354)
T cd05177 167 ---------------------ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMF 224 (354)
T ss_pred ---------------------hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEE
Confidence 1124556666667778899999999999999999999999999999999999 799999
Q ss_pred EEecccccccCCCCc--CCCcCCccccHHHHHHhccCCccc----hHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccc
Q 037207 441 HIDYNVCFDKGQRLK--VPEIVPFRLTQTIEAALGLTGIEG----TFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEW 514 (1989)
Q Consensus 441 HIDFG~cFekGkrL~--vPE~VPFRLTrNIv~ALGptGVEG----~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW 514 (1989)
|||||++|+.++.+. .||+||||||++|+.++|..|.++ .|+..|+.++.+||+|.+.|++++++|+++|+-+|
T Consensus 225 HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~ 304 (354)
T cd05177 225 HIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPEL 304 (354)
T ss_pred EEehHHhcCCCccccCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccc
Confidence 999999999986433 489999999999999998877764 79999999999999999999999999999999999
Q ss_pred cc
Q 037207 515 TR 516 (1989)
Q Consensus 515 ~~ 516 (1989)
..
T Consensus 305 ~~ 306 (354)
T cd05177 305 KD 306 (354)
T ss_pred Cc
Confidence 74
No 22
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=2.7e-39 Score=381.78 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=181.1
Q ss_pred CCcEEEEEEec-eeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCccceec
Q 037207 227 RGIVTIASFSE-EVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIRY 281 (1989)
Q Consensus 227 ~~~VrI~rF~p-~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~Irt 281 (1989)
++.++|.++.+ ++.|++|+++|++|+|.+. |++++||++|++. +.+|++++
T Consensus 58 dP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~----~ldL~l~p 133 (362)
T cd05173 58 NPSIILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEA----GLDLRIVP 133 (362)
T ss_pred CCceEEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHC----CCCeeeEE
Confidence 45689999985 5999999999999999642 9999999999975 57899999
Q ss_pred ceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccC
Q 037207 282 YSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISR 361 (1989)
Q Consensus 282 YsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR 361 (1989)
|.|+|+|+++||||||+|+.|+++|...+.... .. .
T Consensus 134 Y~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~~-----------------~~--------------~------------- 169 (362)
T cd05173 134 YGCLATGDRSGLIEVVSSAETIADIQLNSSNVA-----------------AA--------------A------------- 169 (362)
T ss_pred EEEEEccCCceEEEEeCCchhHHHHHHhccccc-----------------hh--------------c-------------
Confidence 999999999999999999999999875421000 00 0
Q ss_pred CCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEE
Q 037207 362 RDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVH 441 (1989)
Q Consensus 362 ~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVH 441 (1989)
.| ..+.|.+|+... .+.+.|...+.+|++|+|+||++||||||||||++||||+ .+|+++|
T Consensus 170 ----------~f-------~~~~l~~~l~~~-~~~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~H 230 (362)
T cd05173 170 ----------AF-------NKDALLNWLKEY-NSGDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFH 230 (362)
T ss_pred ----------cc-------ChhHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEE
Confidence 00 001233333221 1224455678999999999999999999999999999999 7999999
Q ss_pred EecccccccC--CCCcCCCcCCccccHHHHHHhc--cCC---ccchHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccc
Q 037207 442 IDYNVCFDKG--QRLKVPEIVPFRLTQTIEAALG--LTG---IEGTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEW 514 (1989)
Q Consensus 442 IDFG~cFekG--krL~vPE~VPFRLTrNIv~ALG--ptG---VEG~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW 514 (1989)
||||++|+.. +....||+||||||++|+++|| ..| ..|.|+..|+.++.+||+|.+.|++++++|+..++-++
T Consensus 231 IDFG~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~ 310 (362)
T cd05173 231 IDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPEL 310 (362)
T ss_pred EehHHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccc
Confidence 9999999874 3445699999999999999995 233 46899999999999999999999999999998888776
Q ss_pred c
Q 037207 515 T 515 (1989)
Q Consensus 515 ~ 515 (1989)
.
T Consensus 311 ~ 311 (362)
T cd05173 311 T 311 (362)
T ss_pred c
Confidence 5
No 23
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5.8e-39 Score=378.24 Aligned_cols=217 Identities=21% Similarity=0.334 Sum_probs=173.8
Q ss_pred cEEEEE-EeceeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCccceecce
Q 037207 229 IVTIAS-FSEEVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIRYYS 283 (1989)
Q Consensus 229 ~VrI~r-F~p~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~IrtYs 283 (1989)
.+++.+ +.+.++|++|+++|++|+|.|. |++++||.+|+++ ..+|++++|.
T Consensus 60 ~~~~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~----~ldL~l~pY~ 135 (361)
T cd05174 60 SIILCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMTPYG 135 (361)
T ss_pred ceEEEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHC----CCCeeeEEEE
Confidence 355555 4589999999999999999863 9999999999875 4799999999
Q ss_pred eeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCC
Q 037207 284 VTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRD 363 (1989)
Q Consensus 284 VIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~d 363 (1989)
|+|+|+++||||||+|+.|+++|.+.+.... .. ..|+
T Consensus 136 vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~~-----------------~~-------~~f~------------------- 172 (361)
T cd05174 136 CLSTGDKTGLIEVVKNSDTIANIQLNKSNMA-----------------AT-------AAFN------------------- 172 (361)
T ss_pred EEEecCCceEEEEeCCchhHHHHHHhhcccc-----------------hh-------cccc-------------------
Confidence 9999999999999999999999976431100 00 0000
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHH-HHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEE
Q 037207 364 WPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFS-LKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHI 442 (1989)
Q Consensus 364 wp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~-~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHI 442 (1989)
.+.+.+|+.. .++++|| ..+.+|++|+|+||++||||||||||++||||+ .+|+++||
T Consensus 173 ------------------~~~l~~~l~~--~~~~~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~-~~G~l~HI 231 (361)
T cd05174 173 ------------------KDALLNWLKS--KNPGDALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHI 231 (361)
T ss_pred ------------------chHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEc-CCCCEEEE
Confidence 0113333332 2333344 568999999999999999999999999999998 69999999
Q ss_pred ecccccccC--CCCcCCCcCCccccHHHHHHhccCCcc-----chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcc
Q 037207 443 DYNVCFDKG--QRLKVPEIVPFRLTQTIEAALGLTGIE-----GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIE 513 (1989)
Q Consensus 443 DFG~cFekG--krL~vPE~VPFRLTrNIv~ALGptGVE-----G~FRssceatmr~LRknkd~LlsLLEaFVrDPLvd 513 (1989)
|||++|+.. +....||+||||||++|+++||..|.. |.|+..|+.++.+||+|.+.|++++++|+...+-+
T Consensus 232 DFG~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~ 309 (361)
T cd05174 232 DFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPE 309 (361)
T ss_pred ehHHhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 999999875 334579999999999999999754322 59999999999999999999999999998544433
No 24
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=4e-39 Score=380.05 Aligned_cols=217 Identities=22% Similarity=0.369 Sum_probs=185.2
Q ss_pred CCcEEEEEEe-ceeEEecCCCCceEEEEEcH---------------------------HHHHHHHHHHhcCCccCCCccc
Q 037207 227 RGIVTIASFS-EEVSILSTKTKPKKLVILGQ---------------------------MLLQAVNSFLRSSPATRSHSLG 278 (1989)
Q Consensus 227 ~~~VrI~rF~-p~V~VL~SKqrPRRLtI~GS---------------------------QLFrLINsLL~kdkETRRR~L~ 278 (1989)
++.+++.++. +.+.|++|+++|++|+|.+. |++++||.+|.++ .++|+
T Consensus 60 ~P~~~~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ldL~ 135 (365)
T cd00894 60 DPGLRAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLDLC 135 (365)
T ss_pred CCceEEEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHc----CCCeE
Confidence 4568888885 68999999999999999852 9999999999875 57999
Q ss_pred eecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhccccc
Q 037207 279 IRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRV 358 (1989)
Q Consensus 279 IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v 358 (1989)
+++|.|+|+++++||||||+|+.|+++|.+..... . ..
T Consensus 136 l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~-------------------~------~~----------------- 173 (365)
T cd00894 136 LLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGN-------------------T------GA----------------- 173 (365)
T ss_pred EEEEEEEEecCCceEEEEcCCchhHHHHHHhcccc-------------------c------cc-----------------
Confidence 99999999999999999999999999987532000 0 00
Q ss_pred ccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCc
Q 037207 359 ISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGD 438 (1989)
Q Consensus 359 ~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGe 438 (1989)
.....|++|+....++.+.|...+.+|++|+|+||++||||||||||++||||+ .+|+
T Consensus 174 ---------------------~k~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~ 231 (365)
T cd00894 174 ---------------------FKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGN 231 (365)
T ss_pred ---------------------ccchhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCC
Confidence 001235566666677788899999999999999999999999999999999999 7999
Q ss_pred EEEEecccccccCCC-Cc-CCCcCCccccHHHHHHhccCCcc-----chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCC
Q 037207 439 IVHIDYNVCFDKGQR-LK-VPEIVPFRLTQTIEAALGLTGIE-----GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPL 511 (1989)
Q Consensus 439 VVHIDFG~cFekGkr-L~-vPE~VPFRLTrNIv~ALGptGVE-----G~FRssceatmr~LRknkd~LlsLLEaFVrDPL 511 (1989)
+||||||++|+.++. +. .||+||||||++|+++||+.|.+ +.|+..|+.++.+||+|.+.|++++++++.--+
T Consensus 232 lfHIDFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgi 311 (365)
T cd00894 232 LFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGM 311 (365)
T ss_pred EEEEeeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 999999999998853 33 49999999999999999988766 479999999999999999999999999985433
No 25
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=4.5e-39 Score=371.49 Aligned_cols=185 Identities=26% Similarity=0.393 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
|+|++||.+|+.. +++|.+++|.|||+|+++||||||+|+.|+++|.+++..
T Consensus 51 Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~GlIE~V~ns~tl~~i~~~~~~------------------------ 102 (289)
T cd00893 51 QIITELQKIFELM----FLDLWLNPYLVLPVSKTGGIIEFIPNSISIHEIKKQQIN------------------------ 102 (289)
T ss_pred HHHHHHHHHHHHc----CCCceeEEEEEEECCCCceeEEEeCCchhHHHHHHhccc------------------------
Confidence 9999999999875 579999999999999999999999999999999764300
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMV 416 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmV 416 (1989)
+ +++ .|.+ . + ..++++.|...|.+|++|+|+|||+
T Consensus 103 -~---l~~---------------------------~~~~---~----------~-~~~~~~~~~~a~~nF~~SlA~ySvv 137 (289)
T cd00893 103 -S---LYD---------------------------YFLE---L----------Y-GSYTTEAFLQARYNFIESMAGYSLL 137 (289)
T ss_pred -c---HHH---------------------------HHHH---H----------c-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 010 0110 0 0 1245678999999999999999999
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEecccccccCCCC-cCCCcCCccccHHHHHHhccCCcc--chHHHHHHHHHHHHh
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRL-KVPEIVPFRLTQTIEAALGLTGIE--GTFRANCEAVVSVLR 493 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL-~vPE~VPFRLTrNIv~ALGptGVE--G~FRssceatmr~LR 493 (1989)
||||||||||++|||||. +|+++|||||++|+.++.. ..||.|||||||+|+++||+.|.+ |.|+..|+.++.+||
T Consensus 138 ~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR 216 (289)
T cd00893 138 CYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVR 216 (289)
T ss_pred HHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHh
Confidence 999999999999999995 9999999999999998533 557999999999999999998887 799999999999999
Q ss_pred hChhHHHHHHHHHhhCCCcccc
Q 037207 494 KNKDILLMLLEVFVWDPLIEWT 515 (1989)
Q Consensus 494 knkd~LlsLLEaFVrDPLvdW~ 515 (1989)
+|++.|++++++|+++|+-+|.
T Consensus 217 ~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 217 KHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred hCHHHHHHHHHHHccCCCcccC
Confidence 9999999999999999999986
No 26
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.3e-37 Score=365.67 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=178.8
Q ss_pred cEEEEEEe-ceeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCccceecce
Q 037207 229 IVTIASFS-EEVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIRYYS 283 (1989)
Q Consensus 229 ~VrI~rF~-p~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~IrtYs 283 (1989)
.+.+.++. ..+.|++|+++|++|+|.++ |++++||.+|.+. ..+|++++|.
T Consensus 56 ~~~~~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~----~ldL~l~pY~ 131 (353)
T cd05176 56 SLVAKELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQE----GLDLRMVIFK 131 (353)
T ss_pred ceeEccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC----CCCeEEEEEE
Confidence 35566654 46899999999999999864 9999999999875 4689999999
Q ss_pred eeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCC
Q 037207 284 VTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRD 363 (1989)
Q Consensus 284 VIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~d 363 (1989)
|+|+|+++||||||||+.|+.+|.+.+.. . + . +.
T Consensus 132 vl~tg~~~GlIE~V~ns~tl~~I~~~~~~---------------~-~----------~-~~------------------- 165 (353)
T cd05176 132 CLSTGKDRGMVELVPASETLRKIQVEYGV---------------T-G----------S-FK------------------- 165 (353)
T ss_pred EEEcCCCceEEEEeCCcHhHHHHHHHhCc---------------C-C----------c-cc-------------------
Confidence 99999999999999999999998754310 0 0 0 00
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEe
Q 037207 364 WPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHID 443 (1989)
Q Consensus 364 wp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHID 443 (1989)
...+.+|+....++.+.|...|.+|++|+|+||++||||||||||++||||+ .+|+++|||
T Consensus 166 ------------------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HID 226 (353)
T cd05176 166 ------------------DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHID 226 (353)
T ss_pred ------------------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEe
Confidence 0013334444455667888999999999999999999999999999999998 899999999
Q ss_pred cccccccCCCC--cCCCcCCccccHHHHHHhccCCcc----chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcccc
Q 037207 444 YNVCFDKGQRL--KVPEIVPFRLTQTIEAALGLTGIE----GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEWT 515 (1989)
Q Consensus 444 FG~cFekGkrL--~vPE~VPFRLTrNIv~ALGptGVE----G~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW~ 515 (1989)
||++|+.++.. ..||++|||||++|+.+||..+.. ..|+..|+.++.+||+|.+.|++++++++.-.+-+..
T Consensus 227 FG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~ 304 (353)
T cd05176 227 FGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELT 304 (353)
T ss_pred eHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccC
Confidence 99999987532 348999999999999999843321 3699999999999999999999999999866665543
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1.2e-36 Score=354.13 Aligned_cols=215 Identities=21% Similarity=0.261 Sum_probs=175.4
Q ss_pred CCcEEEEEEe-ceeEEecCC-CCceEEEEEc--------------------------H---------HHHHHHHHHHhcC
Q 037207 227 RGIVTIASFS-EEVSILSTK-TKPKKLVILG--------------------------Q---------MLLQAVNSFLRSS 269 (1989)
Q Consensus 227 ~~~VrI~rF~-p~V~VL~SK-qrPRRLtI~G--------------------------S---------QLFrLINsLL~kd 269 (1989)
++.+.|.++. .+..|++|+ .+|.+++|.. . |++++||.+|++.
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i~~~~ 84 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNIFQSA 84 (311)
T ss_pred CCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 3557788876 577899997 4699998862 1 9999999999875
Q ss_pred CccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHH
Q 037207 270 PATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPA 349 (1989)
Q Consensus 270 kETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~a 349 (1989)
+++|.+++|.|+|+++++||||||+|+.|+.+|.+.+. ..
T Consensus 85 ----~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~----------------------------~~-------- 124 (311)
T cd05167 85 ----GLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTD----------------------------NG-------- 124 (311)
T ss_pred ----CCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcc----------------------------cH--------
Confidence 57899999999999999999999999999988753210 00
Q ss_pred HHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCc
Q 037207 350 LKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDN 429 (1989)
Q Consensus 350 Lke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsN 429 (1989)
..+.|.+.. ..+++..|...|.+|++|+|+|||+||||||||||++|
T Consensus 125 -------------------l~~~f~~~~--------------~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~N 171 (311)
T cd05167 125 -------------------LYEYFTSKY--------------GDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGN 171 (311)
T ss_pred -------------------HHHHHHHHc--------------CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccc
Confidence 001111100 12345678899999999999999999999999999999
Q ss_pred eEEecCCCcEEEEecccccccCCC-CcCCCcCCccccHHHHHHhccCCccc---hHHHHHHHHHHHHhhChhHHHHHHHH
Q 037207 430 ILLDFSSGDIVHIDYNVCFDKGQR-LKVPEIVPFRLTQTIEAALGLTGIEG---TFRANCEAVVSVLRKNKDILLMLLEV 505 (1989)
Q Consensus 430 ILIDr~TGeVVHIDFG~cFekGkr-L~vPE~VPFRLTrNIv~ALGptGVEG---~FRssceatmr~LRknkd~LlsLLEa 505 (1989)
||||. +|+++|||||++|+.++. ...+|+||||||++|+++||+.+..| .|+..|+.++.+||+|.+.|++++++
T Consensus 172 ILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~l 250 (311)
T cd05167 172 IMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVEL 250 (311)
T ss_pred eEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99995 999999999999998742 23479999999999999999988665 77788999999999999999999999
Q ss_pred HhhCCCcccc
Q 037207 506 FVWDPLIEWT 515 (1989)
Q Consensus 506 FVrDPLvdW~ 515 (1989)
|+...+-++.
T Consensus 251 m~~s~lp~~~ 260 (311)
T cd05167 251 MLDSGLPCFR 260 (311)
T ss_pred HHcCCchhhh
Confidence 9976665554
No 28
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.5e-35 Score=347.13 Aligned_cols=217 Identities=21% Similarity=0.346 Sum_probs=175.6
Q ss_pred CCcEEEEEEec-eeEEecCCCCceEEEEEcH----------------------------HHHHHHHHHHhcCCccCCCcc
Q 037207 227 RGIVTIASFSE-EVSILSTKTKPKKLVILGQ----------------------------MLLQAVNSFLRSSPATRSHSL 277 (1989)
Q Consensus 227 ~~~VrI~rF~p-~V~VL~SKqrPRRLtI~GS----------------------------QLFrLINsLL~kdkETRRR~L 277 (1989)
++.++|.++.+ .+.|++|+.+|.+|+|.+. |++++||.+|++. ..+|
T Consensus 58 ~P~~~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ldL 133 (366)
T cd05175 58 NPAHQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQ----GLDL 133 (366)
T ss_pred CCceEEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHC----CCCe
Confidence 35688899875 8899999999999999842 9999999999885 4789
Q ss_pred ceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccc
Q 037207 278 GIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRR 357 (1989)
Q Consensus 278 ~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~ 357 (1989)
++++|.|+|+++++||||||+|+.|+.+|.+.+. + +.. . -|+
T Consensus 134 ~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~----~-----------~~~-~---------~~~------------- 175 (366)
T cd05175 134 RMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGG----L-----------KGA-L---------QFN------------- 175 (366)
T ss_pred EEEEEEEEEecCCceEEEEcCCchhHHHHHhccc----c-----------ccc-c---------ccC-------------
Confidence 9999999999999999999999999999864310 0 000 0 000
Q ss_pred cccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCC
Q 037207 358 VISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSG 437 (1989)
Q Consensus 358 v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TG 437 (1989)
...+.+|+.... ..+.|...|.+|++|+|+||++||||||||||++||||+ .+|
T Consensus 176 ------------------------~~~l~~~l~~~~-~~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~-~~G 229 (366)
T cd05175 176 ------------------------SHTLHQWLKDKN-KGEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDG 229 (366)
T ss_pred ------------------------chhHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEc-CCC
Confidence 001222322222 234577789999999999999999999999999999999 699
Q ss_pred cEEEEecccccccCC-CC-cCCCcCCccccHHHHHHhccCC-----cc--chHHHHHHHHHHHHhhChhHHHHHHHHHhh
Q 037207 438 DIVHIDYNVCFDKGQ-RL-KVPEIVPFRLTQTIEAALGLTG-----IE--GTFRANCEAVVSVLRKNKDILLMLLEVFVW 508 (1989)
Q Consensus 438 eVVHIDFG~cFekGk-rL-~vPE~VPFRLTrNIv~ALGptG-----VE--G~FRssceatmr~LRknkd~LlsLLEaFVr 508 (1989)
+++|||||++|+.++ .+ ..||+||||||++|+..||..+ .+ +.|+..|..++.+||+|.+.|++++++++.
T Consensus 230 ~l~HIDFG~iLg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~ 309 (366)
T cd05175 230 QLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLG 309 (366)
T ss_pred CEEEEehHHhhcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999874 33 4699999999999999997543 23 589999999999999999999999999974
Q ss_pred CCC
Q 037207 509 DPL 511 (1989)
Q Consensus 509 DPL 511 (1989)
--+
T Consensus 310 sgi 312 (366)
T cd05175 310 SGM 312 (366)
T ss_pred CCC
Confidence 333
No 29
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=2e-34 Score=339.01 Aligned_cols=215 Identities=17% Similarity=0.284 Sum_probs=179.1
Q ss_pred CCCcEEEEEEe-ceeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCcccee
Q 037207 226 LRGIVTIASFS-EEVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIR 280 (1989)
Q Consensus 226 ~~~~VrI~rF~-p~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~Ir 280 (1989)
.++.++|.++. +.+.|++|+.+|.+|+|.+. |++++||.+|++. ..+|+++
T Consensus 54 ldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ldl~l~ 129 (354)
T cd00895 54 LSPSLLVKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQE----GLDMRMV 129 (354)
T ss_pred CCCCeEEEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHc----CCCceEE
Confidence 34568888987 58899999999999999864 9999999999986 4789999
Q ss_pred cceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhccccccc
Q 037207 281 YYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVIS 360 (1989)
Q Consensus 281 tYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~s 360 (1989)
+|.|+|+|+++|+||||||+.|+.+|.+.+.. . + . + +
T Consensus 130 pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~g~---------------~-g----------~-~-------~--------- 166 (354)
T cd00895 130 IFRCFSTGRGRGMVEMIPNAETLRKIQVEHGV---------------T-G----------S-F-------K--------- 166 (354)
T ss_pred EEEEEecCCCceEEEEeCChhhHHHHHHHhCc---------------C-c----------c-c-------c---------
Confidence 99999999999999999999999999764210 0 0 0 0 0
Q ss_pred CCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEE
Q 037207 361 RRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIV 440 (1989)
Q Consensus 361 R~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVV 440 (1989)
...|.+|+....++...|...+.||++|+|+||+++|||||||||++||||+ .+|+++
T Consensus 167 ---------------------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~Ghlf 224 (354)
T cd00895 167 ---------------------DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMF 224 (354)
T ss_pred ---------------------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEE
Confidence 0013333433445566788899999999999999999999999999999999 899999
Q ss_pred EEecccccccCCCC--cCCCcCCccccHHHHHHhccCCcc----chHHHHHHHHHHHHhhChhHHHHHHHHHhhC
Q 037207 441 HIDYNVCFDKGQRL--KVPEIVPFRLTQTIEAALGLTGIE----GTFRANCEAVVSVLRKNKDILLMLLEVFVWD 509 (1989)
Q Consensus 441 HIDFG~cFekGkrL--~vPE~VPFRLTrNIv~ALGptGVE----G~FRssceatmr~LRknkd~LlsLLEaFVrD 509 (1989)
|||||++|+..+.. ..+|++||+||++|+.+||..|.+ ..|+..|..++.+||+|.+.|++++++++.-
T Consensus 225 HIDFG~iLg~~~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~s 299 (354)
T cd00895 225 HIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSC 299 (354)
T ss_pred EEeeHHhcCCCcccCCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 99999999976422 357999999999999999854443 2799999999999999999999999999953
No 30
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=99.92 E-value=2.5e-25 Score=274.06 Aligned_cols=212 Identities=23% Similarity=0.377 Sum_probs=166.9
Q ss_pred eceeEEecCCCCceEEEEEcH-------------------------HHHHHHHHHHhcCCccCCCccceecceeeEecCC
Q 037207 236 SEEVSILSTKTKPKKLVILGQ-------------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGR 290 (1989)
Q Consensus 236 ~p~V~VL~SKqrPRRLtI~GS-------------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~ 290 (1989)
..++.||.||.||..+.+-.- |++++|..||+.. ..+|++.+|.++|++..
T Consensus 781 iekckvM~SkkrPLwl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~----glDlrm~PYgcls~Gd~ 856 (1076)
T KOG0904|consen 781 IEKCKVMDSKKRPLWLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTE----GLDLRMLPYGCLSTGDR 856 (1076)
T ss_pred hhhhhhhhccCCceEEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhc----CCCeeccccccccccce
Confidence 367889999999999988421 9999999999876 47899999999999999
Q ss_pred cceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHHH
Q 037207 291 AGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKR 370 (1989)
Q Consensus 291 sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkr 370 (1989)
+||||-|+++.|+.+|-..- ++.. +..+
T Consensus 857 iGlIEVV~~s~TIa~IQ~~~--------------g~~~-at~a------------------------------------- 884 (1076)
T KOG0904|consen 857 IGLIEVVRNSETIANIQLNT--------------GNMA-ATAA------------------------------------- 884 (1076)
T ss_pred eeeEEEecCchhhhhhhhcc--------------ccce-eecc-------------------------------------
Confidence 99999999999998774210 0000 0000
Q ss_pred HHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEeccccccc
Q 037207 371 KVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 371 eVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
+.++.|.+|+--+.+.-..+-.....||.|||.+|+++|||||||||.|||||. .||++||||||+++|.
T Consensus 885 ---------fn~~~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvk-e~GqlFHIDFGHiLGh 954 (1076)
T KOG0904|consen 885 ---------FNKDALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVK-ETGQLFHIDFGHILGH 954 (1076)
T ss_pred ---------CCHHHHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEe-ccCcEEEEEhhhhhcc
Confidence 011122333222222222244567899999999999999999999999999998 8999999999999998
Q ss_pred CC-CC-cCCCcCCccccHHHHHHhccCCcc------chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcc
Q 037207 451 GQ-RL-KVPEIVPFRLTQTIEAALGLTGIE------GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIE 513 (1989)
Q Consensus 451 Gk-rL-~vPE~VPFRLTrNIv~ALGptGVE------G~FRssceatmr~LRknkd~LlsLLEaFVrDPLvd 513 (1989)
++ .+ -..|+|||-||+.++..|+-.+.+ +.|+..|+.++-+||+|.+.+++++..++---|-+
T Consensus 955 ~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPE 1025 (1076)
T KOG0904|consen 955 FKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPE 1025 (1076)
T ss_pred chhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCc
Confidence 84 34 447999999999999999986653 58999999999999999999999999999654433
No 31
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.7e-23 Score=247.19 Aligned_cols=212 Identities=21% Similarity=0.421 Sum_probs=170.1
Q ss_pred CCCcEEEEEEe-ceeEEecCCCCceEEEEEcH-----------------------HHHHHHHHHHhcCCccCCCccceec
Q 037207 226 LRGIVTIASFS-EEVSILSTKTKPKKLVILGQ-----------------------MLLQAVNSFLRSSPATRSHSLGIRY 281 (1989)
Q Consensus 226 ~~~~VrI~rF~-p~V~VL~SKqrPRRLtI~GS-----------------------QLFrLINsLL~kdkETRRR~L~Irt 281 (1989)
-.+.|+|.++. ++.++++|...|-+|+|+.. |+.++||.+|++. .-+|.+++
T Consensus 551 ldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~LLkke----nlDLkLtp 626 (843)
T KOG0906|consen 551 LDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRLLKKE----NLDLKLTP 626 (843)
T ss_pred CCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHHHHhccc----ccccccee
Confidence 44668999987 57899999999999999843 9999999999986 46899999
Q ss_pred ceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccC
Q 037207 282 YSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISR 361 (1989)
Q Consensus 282 YsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR 361 (1989)
|.|+|+|+.-|+||+||+ .||..|...|.... . |..+..| .
T Consensus 627 YkVLatg~~eG~vefI~s-~~la~Ils~~~~I~---~-----------------------ylke~~p------------~ 667 (843)
T KOG0906|consen 627 YKVLATGPKEGFVEFIPS-KPLARILSEYHSIL---M-----------------------YLKEDRP------------D 667 (843)
T ss_pred eEEeccCCCcccEEeecC-CcHHHHHHHHHHHH---H-----------------------HHHhhCC------------C
Confidence 999999999999999975 68888887764311 1 1110000 0
Q ss_pred CCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEE
Q 037207 362 RDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVH 441 (1989)
Q Consensus 362 ~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVH 441 (1989)
...|.. .. ...+++|.+|||.+|+++||||+|||||+|+|+. .+|++||
T Consensus 668 e~ap~g-----------------------------i~-~~v~dnfVkScaGYsVitYILGvGDRhldNLllT-~dGk~FH 716 (843)
T KOG0906|consen 668 ENAPFG-----------------------------IS-PEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLT-KDGKLFH 716 (843)
T ss_pred cCCCCC-----------------------------CC-hhHHHHHHHhhccceeeeeeecccCCCcCceEEc-cCCcEEE
Confidence 000000 00 1356899999999999999999999999999999 8999999
Q ss_pred EecccccccCCCCcCCCcCCccccHHHHHHhccCCcc--chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCccc
Q 037207 442 IDYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIE--GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIEW 514 (1989)
Q Consensus 442 IDFG~cFekGkrL~vPE~VPFRLTrNIv~ALGptGVE--G~FRssceatmr~LRknkd~LlsLLEaFVrDPLvdW 514 (1989)
||||++|+..+ .|-+-|..|++.|+.+||..... -.|++-|..++..||++...|++++++++-.-+-|-
T Consensus 717 iDFgyIlGRDP---KP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDi 788 (843)
T KOG0906|consen 717 IDFGYILGRDP---KPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDI 788 (843)
T ss_pred EeeeeeccCCC---CCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCce
Confidence 99999998764 36668999999999999965442 489999999999999999999999999996666443
No 32
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=99.88 E-value=1e-22 Score=255.01 Aligned_cols=208 Identities=19% Similarity=0.310 Sum_probs=174.7
Q ss_pred ceeEEecCCCCceEEEEEcH------------------------HHHHHHHHHHhcCCccCCCccceecceeeEecCCcc
Q 037207 237 EEVSILSTKTKPKKLVILGQ------------------------MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAG 292 (1989)
Q Consensus 237 p~V~VL~SKqrPRRLtI~GS------------------------QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sG 292 (1989)
..+.+++|...|.||+|+|. |++++||.||.+. +.+|++.+|+++|.|-+.|
T Consensus 1059 ~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~e----gLDlrMViFrc~stG~~rg 1134 (1639)
T KOG0905|consen 1059 RECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQE----GLDLRMVIFRCLSTGYDRG 1134 (1639)
T ss_pred cccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHhc----CCceeEEEEEeeccccccc
Confidence 35678899999999999993 9999999999986 5789999999999999999
Q ss_pred eeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCchhhhhhhhHHHHhhcccccccCCCCChHHHHHH
Q 037207 293 LIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKV 372 (1989)
Q Consensus 293 LIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vprP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreV 372 (1989)
|||-||++.||..|-.++- + .+ .+
T Consensus 1135 MvElVp~a~TLrKIQve~G----l-----------tG-------------------sf---------------------- 1158 (1639)
T KOG0905|consen 1135 MVELVPNAETLRKIQVEEG----L-----------TG-------------------SF---------------------- 1158 (1639)
T ss_pred ceeecccHHHHHHHHHHhc----c-----------cc-------------------cc----------------------
Confidence 9999999999988765431 0 00 00
Q ss_pred HHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccccCC
Q 037207 373 LLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQ 452 (1989)
Q Consensus 373 F~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGk 452 (1989)
.+..|++|+...-++..+|-....||++|||.+|+++|||||+|||.||||+. +||++||||||-.++.++
T Consensus 1159 --------kD~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~-~sGHmFHIDFGKFLGhaQ 1229 (1639)
T KOG0905|consen 1159 --------KDRPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQ 1229 (1639)
T ss_pred --------ccchHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEe-ccCcEEEEehhhhcchHH
Confidence 01125666666667777888888999999999999999999999999999998 999999999999988764
Q ss_pred CC--cCCCcCCccccHHHHHHhccCCcc----chHHHHHHHHHHHHhhChhHHHHHHHHHhhCCCcc
Q 037207 453 RL--KVPEIVPFRLTQTIEAALGLTGIE----GTFRANCEAVVSVLRKNKDILLMLLEVFVWDPLIE 513 (1989)
Q Consensus 453 rL--~vPE~VPFRLTrNIv~ALGptGVE----G~FRssceatmr~LRknkd~LlsLLEaFVrDPLvd 513 (1989)
.+ -...++||-+|-.|..++...+-. -.|...|+.++..+|+|.+.|+++|..|+.--+-.
T Consensus 1230 Mfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPe 1296 (1639)
T KOG0905|consen 1230 MFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPE 1296 (1639)
T ss_pred HhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC
Confidence 32 224799999999999999876654 48999999999999999999999999999765533
No 33
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-20 Score=230.30 Aligned_cols=181 Identities=25% Similarity=0.383 Sum_probs=154.7
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
||+..|-.+|...+ -.+++++|.|+-+|.++||||-|+|+.++|+|-+.+-+-. .
T Consensus 606 Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~---~------------------ 660 (847)
T KOG0903|consen 606 QLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLA---S------------------ 660 (847)
T ss_pred HHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhh---h------------------
Confidence 99999999998864 5799999999999999999999999999999987641100 0
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMV 416 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmV 416 (1989)
.+.| +.. ...++.+.|....+||..|+|.||+|
T Consensus 661 --l~~F------------------------------------------~~~---~g~~NS~~yk~AQrNFvqSlagYSLv 693 (847)
T KOG0903|consen 661 --LRHF------------------------------------------FAA---FGKPNSEKYKSAQRNFVQSLAGYSLV 693 (847)
T ss_pred --HHHH------------------------------------------HHH---hCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 12356677888889999999999999
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEecccccccCCCCcCCCcCCccccHHHHHHhccCCccc----hHHHHHHHHHHHH
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIEG----TFRANCEAVVSVL 492 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL~vPE~VPFRLTrNIv~ALGptGVEG----~FRssceatmr~L 492 (1989)
+|+|.+.|||..||||| .-|+|+||||||.+...+..--.|.-||.||..+++.|| |++| -|+..|.+.+.++
T Consensus 694 cYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~ 770 (847)
T KOG0903|consen 694 CYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMAL 770 (847)
T ss_pred HHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 899999999999999887766679999999999999999 8887 7899999999999
Q ss_pred hhChhHHHHHHHHHhhCCCc
Q 037207 493 RKNKDILLMLLEVFVWDPLI 512 (1989)
Q Consensus 493 Rknkd~LlsLLEaFVrDPLv 512 (1989)
|+|.+.|+.+.|+|-.+--.
T Consensus 771 RKhadrIv~lvEiMq~~S~~ 790 (847)
T KOG0903|consen 771 RKHADRIVLLVEIMQDGSGM 790 (847)
T ss_pred HHHHHHHHHHHHHhhccCCC
Confidence 99999999999999764433
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.81 E-value=7.5e-19 Score=224.57 Aligned_cols=182 Identities=23% Similarity=0.354 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
|++.++-.++..- ..++.+-+|+|+|.+|.||+||.|||+.+=.++-+. + .+
T Consensus 1564 Qiislf~~if~~~----gLd~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~----------------t-~~------- 1615 (1803)
T KOG0902|consen 1564 QIISLFKNIFQLV----GLDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRE----------------T-DN------- 1615 (1803)
T ss_pred HHHHHHHHHHHHc----CCceEEeeeeeeccCCCCceEEeCCCCccHHHhccc----------------c-cc-------
Confidence 9999999999875 478899999999999999999999999883222110 0 00
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMV 416 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmV 416 (1989)
-.|+ .|.. + ....+++.|-+.|.||.+|+|.+|++
T Consensus 1616 ----glye---------------------------yF~~---~-----------~G~~~s~~fq~Ar~NF~~S~A~Ysv~ 1650 (1803)
T KOG0902|consen 1616 ----GLYE---------------------------YFTR---K-----------YGDESSEAFQTARYNFVRSMAGYSVL 1650 (1803)
T ss_pred ----cHHH---------------------------HHHH---h-----------cCccchHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1110 0 12356778889999999999999999
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEecccccccCC--CCcCCCcCCccccHHHHHHhccCCccc----hHHHHHHHHHH
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQ--RLKVPEIVPFRLTQTIEAALGLTGIEG----TFRANCEAVVS 490 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGk--rL~vPE~VPFRLTrNIv~ALGptGVEG----~FRssceatmr 490 (1989)
+|.|.+.|||..||||| +-|+++|||||++||..+ .+.+ |. ||.||..|+..||+. .++ .|...|+..+-
T Consensus 1651 s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~e~sPGgnl~f-E~-~fKLt~Em~~~mgG~-~~~~~f~~f~elcVk~yL 1726 (1803)
T KOG0902|consen 1651 SYLLQIKDRHNGNIMID-DQGHIIHIDFGFMFESSPGGNLGF-EP-PFKLTKEMVMLMGGK-MEAKPFKWFQELCVKGYL 1726 (1803)
T ss_pred HHHcccccccCCceeEc-cCCCEEEEeeeeEEecCCCCccCc-CC-CccchHHHHHHhCCC-CCCCcHHHHHHHHHHHHH
Confidence 99999999999999999 899999999999999863 3443 77 999999999999932 223 78999999999
Q ss_pred HHhhChhHHHHHHHHHhhCCCcccc
Q 037207 491 VLRKNKDILLMLLEVFVWDPLIEWT 515 (1989)
Q Consensus 491 ~LRknkd~LlsLLEaFVrDPLvdW~ 515 (1989)
+.|.+.+.|+...+.|+---|-+++
T Consensus 1727 A~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1727 AARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred hhchhHHHHHHHHHHHHhcCCCccC
Confidence 9999999999999999998888884
No 35
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.69 E-value=8.5e-17 Score=195.77 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCccCCCccceecceeeEecCCcceeeecCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 037207 257 MLLQAVNSFLRSSPATRSHSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSWQHRAQLAQFSAIGAGNAKSSVPPPVP 336 (1989)
Q Consensus 257 QLFrLINsLL~kdkETRRR~L~IrtYsVIPLSp~sGLIEWVpntvTL~eIyk~~~~R~~i~q~~~~~~~n~k~~~~~~vp 336 (1989)
|++++|+.||+++. .+|.+++|+|+|++++.||||.|++. +|.+|.... +
T Consensus 1069 QmIrLMDrLLKkEn----LDLKLTPYRVLATG~dsGLIEfVps~-tLAsI~~~~-----I-------------------- 1118 (1374)
T PTZ00303 1069 ISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDSGLIEKAEGR-ELSNLDNMD-----I-------------------- 1118 (1374)
T ss_pred HHHHHHHHHHHhcC----CCccccceEEEeccCCcccEEEecch-HHHHhhhhH-----H--------------------
Confidence 99999999999874 68999999999999999999999875 455442110 0
Q ss_pred CCchhhhhhhhHHHHhhcccccccCCCCChHHHHHHHHHHHhccchhhHHHHHHhhcCChhHHHHHHHHHHHhhhhHHHH
Q 037207 337 RPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKRKVLLDLMKEVPRQLLHQEIWCASEGFKAFSLKLKRYSESVAAMSMV 416 (1989)
Q Consensus 337 rP~dlfy~kl~~aLke~gi~~v~sR~dwp~evkreVF~eL~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrSLAVmSmV 416 (1989)
. +|+.. .++ ....||++|+|.||++
T Consensus 1119 ----------l---------------------------------------~YLr~--~~t----~~~~NFi~S~AGYsVi 1143 (1374)
T PTZ00303 1119 ----------A---------------------------------------SYVLY--RGT----RSCINFLASAKLFLLL 1143 (1374)
T ss_pred ----------H---------------------------------------HHHHh--cCc----HHHHHHHHHHHHHHHH
Confidence 0 00000 011 1146999999999999
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEecccccccCCCCcCCCcCCccccHHHHHHhc
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAALG 473 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkrL~vPE~VPFRLTrNIv~ALG 473 (1989)
+|||||||||++||||+ .+|++||||||++|+....-..+-+-|.|+-..|..+++
T Consensus 1144 TYILgIgDRHngNILId-~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~ 1199 (1374)
T PTZ00303 1144 NYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVE 1199 (1374)
T ss_pred HHHhccCcccCCceeEc-CCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHH
Confidence 99999999999999999 899999999999998754333455678898888887776
No 36
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=99.44 E-value=1.7e-13 Score=138.02 Aligned_cols=97 Identities=30% Similarity=0.540 Sum_probs=79.2
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhhHHHHHHhhHHHHHHHHHHHhhcCCCCC
Q 037207 53 ELGNLTVLWEELWLSTLQDLHADVMRRINVLKEEAARIAENATLSQSEKKKINAAKYSAMMAPIVVALERRLASTSRKPE 132 (1989)
Q Consensus 53 ELiRIavLW~E~Wl~~L~qL~~dv~rRl~~L~eEaaRl~~n~~Ls~~eK~~i~~~k~~aim~Piv~~Le~~~a~Ts~~pe 132 (1989)
||+|||+||+|+|+++|+ +|+|.+ +.++ +.+++..+|.|++..|+ ++|+
T Consensus 1 ELiRvAilW~E~W~~~Le---------------~As~~y------~~~~---n~~~m~~~L~pLh~~l~-------k~Pe 49 (100)
T PF08771_consen 1 ELIRVAILWHELWYEALE---------------EASRLY------FGEN---NVEKMFKILEPLHEMLE-------KGPE 49 (100)
T ss_dssp --SSSSSSHHHHHHHHHH---------------HHHHHH------HTTT----HHHHHHHHHHHHHHHH-------HS-S
T ss_pred ChHHHHhhHHHHHHHHHH---------------HHHHHH------Hhhc---CHHHHHHHHHHHHHHHc-------CCCC
Confidence 899999999999999995 577876 3444 46788889999998886 4899
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhcCCc--cccchHHHHHHHHHHHHHHHHh
Q 037207 133 TPHEIWFHEEFGEQLKSAILNFKTPP--ASAAALGDVWRPFDNIAASLAS 180 (1989)
Q Consensus 133 TphE~~F~k~yg~~L~~Aie~lk~~~--~~~~~L~e~W~~fk~I~k~L~~ 180 (1989)
|+.|.+|++.||..|.+|.+.++++. +...+++++|+.|+.+++++..
T Consensus 50 T~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~i~~ 99 (100)
T PF08771_consen 50 TLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQAWDIYYQVYRRIKK 99 (100)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988643 3467999999999999999864
No 37
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.34 E-value=2.9e-13 Score=111.24 Aligned_cols=33 Identities=48% Similarity=0.957 Sum_probs=27.8
Q ss_pred cccCHHHHHHHHHHHHcCchhhHhhccccccCC
Q 037207 1957 RNLSIAEQVDHLLKQATSVDNLCNMYEGWTPWI 1989 (1989)
Q Consensus 1957 ~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf~ 1989 (1989)
++|+|++||+.||++|||++|||+||+||+|||
T Consensus 1 e~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 1 EPLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp --S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 368999999999999999999999999999998
No 38
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.89 E-value=8.5e-10 Score=153.16 Aligned_cols=62 Identities=47% Similarity=0.772 Sum_probs=60.3
Q ss_pred cccccchHhHHHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHcCchhhHhhccccccCC
Q 037207 1928 RVARGKNAYAISVLRRVEMKLDGRDIVENRNLSIAEQVDHLLKQATSVDNLCNMYEGWTPWI 1989 (1989)
Q Consensus 1928 ~~~e~~N~~A~~vl~RV~~KL~G~df~~~~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf~ 1989 (1989)
..++.+|.++..|++|+.+||+|+||.+..+++|..||+.||+|||+++||||+|+||||||
T Consensus 2280 ~~~e~~n~~~~~vl~~~~~kltg~~~~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2280 VKPEALNARAIQVLKRISDKLTGRDFVHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred ccccccChhhHHHHHhcccccceeeccCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999
No 39
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=9.2e-09 Score=140.15 Aligned_cols=52 Identities=37% Similarity=0.634 Sum_probs=50.3
Q ss_pred HHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHcCchhhHhhccccccCC
Q 037207 1938 ISVLRRVEMKLDGRDIVENRNLSIAEQVDHLLKQATSVDNLCNMYEGWTPWI 1989 (1989)
Q Consensus 1938 ~~vl~RV~~KL~G~df~~~~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf~ 1989 (1989)
+.++.||++||.|....++.||||+|||+.||++|||.+|||+||+||.|||
T Consensus 2331 ~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2331 RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred HHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 8999999999999877789999999999999999999999999999999998
No 40
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=4.1e-07 Score=125.42 Aligned_cols=54 Identities=37% Similarity=0.627 Sum_probs=50.5
Q ss_pred hHhHHHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHcCchhhHhhccccccCC
Q 037207 1934 NAYAISVLRRVEMKLDGRDIVENRNLSIAEQVDHLLKQATSVDNLCNMYEGWTPWI 1989 (1989)
Q Consensus 1934 N~~A~~vl~RV~~KL~G~df~~~~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf~ 1989 (1989)
+..|.+++-|+.+||.|.. .|..+||++||+.||+|||||.|||.||+||.||.
T Consensus 2753 d~~a~r~l~r~q~kl~g~e--~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2753 DRNAVRALMRAQRKLDGVE--QGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred chHHHHHHHHHHHHhhhhh--ccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 5889999999999999977 56788999999999999999999999999999994
No 41
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.01 E-value=3.1e-06 Score=120.57 Aligned_cols=59 Identities=34% Similarity=0.528 Sum_probs=56.9
Q ss_pred ccchHhHHHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHcCchhhHhhccccccCC
Q 037207 1931 RGKNAYAISVLRRVEMKLDGRDIVENRNLSIAEQVDHLLKQATSVDNLCNMYEGWTPWI 1989 (1989)
Q Consensus 1931 e~~N~~A~~vl~RV~~KL~G~df~~~~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf~ 1989 (1989)
+..|..+..+++|+..||+|.|......+.|++||+.||.+|||+.|||+||+||||||
T Consensus 2047 ~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2047 EIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhccccccCC
Confidence 57799999999999999999999888999999999999999999999999999999999
No 42
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=88.01 E-value=0.28 Score=41.46 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHhcchhhhhhhH
Q 037207 599 VLHETSTKSMVAEANCNAEKIRASF 623 (1989)
Q Consensus 599 l~~E~~v~~Lv~eA~~~~enl~~~~ 623 (1989)
++.|.+|..|+++|++ ++|||+||
T Consensus 3 lsv~~qV~~LI~~At~-~~nLa~my 26 (33)
T PF02260_consen 3 LSVEQQVDELISEATD-PENLARMY 26 (33)
T ss_dssp S-STHHHHHHHHHHHH-HHHHHHHC
T ss_pred CCHHHHHHHHHHHHcC-HHHHHHHh
Confidence 5788999999999999 99999998
No 43
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=67.99 E-value=6.9 Score=43.61 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+|-||+|||++ +|++.=||||.+-.
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~ 166 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVE 166 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEccccee
Confidence 79999999998 89999999998864
No 44
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=66.66 E-value=7 Score=51.42 Aligned_cols=26 Identities=38% Similarity=0.668 Sum_probs=23.1
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
-|--||||||| ..|+|=-.|||.|-+
T Consensus 753 RDiKPDNILID-rdGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 753 RDIKPDNILID-RDGHIKLTDFGLCTG 778 (1034)
T ss_pred cccCccceEEc-cCCceeeeecccccc
Confidence 37789999999 799999999999954
No 45
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=65.86 E-value=7.1 Score=43.97 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCCCCCceEEecCCCcEEEEeccccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
||-+|+|||++ +|+|.=||||.+-..
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~~ 167 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVEH 167 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEccccccC
Confidence 89999999998 599999999987643
No 46
>PRK14879 serine/threonine protein kinase; Provisional
Probab=64.32 E-value=15 Score=40.87 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.8
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
||-+|+|||++ .|.+.-||||.+-
T Consensus 119 ~Dl~p~Nil~~--~~~~~liDf~~a~ 142 (211)
T PRK14879 119 GDLTTSNMILS--GGKIYLIDFGLAE 142 (211)
T ss_pred CCCCcccEEEE--CCCEEEEECCccc
Confidence 89999999999 7999999999764
No 47
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=62.23 E-value=15 Score=40.58 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.3
Q ss_pred CCCCCCceEEecCCCcEEEEecccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
||-||.|||++ .|++.-||||.+
T Consensus 114 ~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 114 GDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred CCCCcceEEEE--CCcEEEEECCCC
Confidence 89999999999 799999999865
No 48
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=58.72 E-value=7.9 Score=41.19 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=25.1
Q ss_pred HhhcccCCCCCCceEEecCCCcEEEEeccccc
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
.+.+-=||-||+|||++ .|++.-|||+.+-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 44555699999999998 6889999998764
No 49
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=55.43 E-value=11 Score=45.00 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=37.2
Q ss_pred hhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccccC
Q 037207 409 SVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKG 451 (1989)
Q Consensus 409 SLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekG 451 (1989)
.+.-|+++=+++.=.|||..|||... +|+++-||-|+||...
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~ 175 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVE 175 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCC
Confidence 45567889999999999999999984 8999999999999764
No 50
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=50.02 E-value=14 Score=41.30 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=25.7
Q ss_pred ccCCCCCCceEEecCCCcEEEEecccccccC
Q 037207 421 GLGDRHLDNILLDFSSGDIVHIDYNVCFDKG 451 (1989)
Q Consensus 421 GLGDRHPsNILIDr~TGeVVHIDFG~cFekG 451 (1989)
-=||-+|+||+|+ .+|++.=||||.++..+
T Consensus 147 ~H~Dl~p~Nill~-~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 147 IHGDLSEFNILVD-DDEKIYIIDWPQMVSTD 176 (198)
T ss_pred CcCCCCcccEEEc-CCCcEEEEECCccccCC
Confidence 3469999999998 58999999999997655
No 51
>smart00090 RIO RIO-like kinase.
Probab=48.97 E-value=15 Score=42.97 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.3
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccccC
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFDKG 451 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFekG 451 (1989)
=||-||+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 379999999999 8999999999887544
No 52
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=47.51 E-value=13 Score=41.06 Aligned_cols=34 Identities=38% Similarity=0.387 Sum_probs=23.9
Q ss_pred HHHhhcccCCCCCCceEEecCCCcEEEEeccccc
Q 037207 415 MVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 415 mVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
-..+.+.=||-||+|||++...|+|--|||+.+.
T Consensus 163 ~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~ 196 (239)
T PF01636_consen 163 PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG 196 (239)
T ss_dssp CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred CCCcEEEEeccccccceeeeccceeEEEecccce
Confidence 3567788899999999999777888789998753
No 53
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=46.41 E-value=67 Score=35.49 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=35.7
Q ss_pred cccCCCCCCceEEecCCCcEEEEecccccccCCC--CcCCCcCCccccHHHHHHh
Q 037207 420 LGLGDRHLDNILLDFSSGDIVHIDYNVCFDKGQR--LKVPEIVPFRLTQTIEAAL 472 (1989)
Q Consensus 420 LGLGDRHPsNILIDr~TGeVVHIDFG~cFekGkr--L~vPE~VPFRLTrNIv~AL 472 (1989)
+--||-+|+||+++ .+|.+.=+|||.+...+.. ...+...+.-+.|.+....
T Consensus 119 i~h~dl~p~ni~i~-~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~ 172 (253)
T cd05122 119 IIHRDIKAANILLT-SDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGK 172 (253)
T ss_pred EecCCCCHHHEEEc-cCCeEEEeeccccccccccccccceecCCcccCHHHHcCC
Confidence 55689999999999 5899999999988765432 1222333444566665443
No 54
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=46.27 E-value=15 Score=40.07 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.5
Q ss_pred cCCCCCCceEEecCCCcEEEEeccccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
=||-||+|||++ +|.+.-||||.+-..
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~~ 164 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVEI 164 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECcccccc
Confidence 469999999999 899999999988543
No 55
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=43.23 E-value=56 Score=38.40 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=32.2
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccccCCC---CcCCCcCCccccHHHHH
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFDKGQR---LKVPEIVPFRLTQTIEA 470 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFekGkr---L~vPE~VPFRLTrNIv~ 470 (1989)
-||-+|+|||++ .+|.+.-+|||.+...... .......|+-+.|.+..
T Consensus 138 H~dL~p~Nili~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 188 (297)
T cd06656 138 HRDIKSDNILLG-MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT 188 (297)
T ss_pred cCCCCHHHEEEC-CCCCEEECcCccceEccCCccCcCcccCCccccCHHHHc
Confidence 389999999998 7899999999987643311 11112334555666553
No 56
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=43.18 E-value=30 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.5
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
||=||.|||++ .+|+++-+|||.+=
T Consensus 281 ~D~hPgNilv~-~~g~i~liDfG~~~ 305 (437)
T TIGR01982 281 ADLHPGNIFVL-KDGKIIALDFGIVG 305 (437)
T ss_pred CCCCcccEEEC-CCCcEEEEeCCCee
Confidence 69999999997 68999999999873
No 57
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=42.22 E-value=17 Score=43.07 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.1
Q ss_pred CCCCCCceEEecCCCcEEEEecccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
||-||+||+++ ..| |+-||||..
T Consensus 159 ~Dikp~Nili~-~~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVS-KNG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEe-CCC-EEEEECCCc
Confidence 79999999998 567 999999855
No 58
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=42.07 E-value=1.8e+02 Score=30.66 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEeccccccc
Q 037207 405 RYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 405 nFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
+.+..++.+--.|+ --||-+|+||+++..+|.+.-+|||.+-..
T Consensus 100 ~l~~~l~~lh~~~~--~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~ 143 (215)
T cd00180 100 QILEGLEYLHSNGI--IHRDLKPENILLDSDNGKVKLADFGLSKLL 143 (215)
T ss_pred HHHHHHHHHHhCCe--eccCCCHhhEEEeCCCCcEEEecCCceEEc
Confidence 44444444333333 447999999999965899999999987543
No 59
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=41.56 E-value=2.2e+02 Score=35.53 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=82.6
Q ss_pred chhHHHHhcCCCcccCCchhhhhHhhhhH-----HHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHhhc-----
Q 037207 680 SLTSAVLVAGVPFSIVPEPTQVQCHDIDK-----DVSQLIAELDH-------GLSSVFIALQAYSLA---LQRIL----- 739 (1989)
Q Consensus 680 ~l~~~~~~ag~p~~~~p~~~~~qc~~~d~-----E~~qll~~r~~-------~l~~~l~~L~~Y~~~---~~~~~----- 739 (1989)
.|++++.....|. ||+.++..|+++-. -+.+.+.+... .|..|.+.|..=... ++..|
T Consensus 41 nLP~sl~~l~~~~--lP~sl~~~~~~i~~~gg~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wt 118 (339)
T cd09235 41 NLPAAIEDVSGDT--VPQSLLEKSRTVIEKGGIQTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWT 118 (339)
T ss_pred CCcHHHHHhcCCC--CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCC
Confidence 3444455555553 78889999988822 23344444444 444444444332211 12234
Q ss_pred --CcccccchhHhHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhhcCCCCcchhh-----------hHHHHHHHHHHHH
Q 037207 740 --PLNYLTTTAVHGWAQVLQLSANAPSV-DILSLARRQATELIVRIHGDNHDSIKQ-----------NHDDLRLKVEKYG 805 (1989)
Q Consensus 740 --P~sy~~~~~~~~W~~~l~~~~~~~s~-d~~~~~~rq~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~e~~~ 805 (1989)
|-+-++...+..+.+.-+.+-.+..+ ..+...+++....|.---|...+ +.. .-...-..|....
T Consensus 119 r~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lLs~~~~~-l~~~lPss~~~~~~~~~~~v~~Lr~~l 197 (339)
T cd09235 119 RTPSNKLTKPLRAEGSKYRTILDNAVQADKIVREKYESHREGIELLSKPEEE-LANAIPSASPAKTLQGSEAVQELRQLM 197 (339)
T ss_pred CCChHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHH-HHHhCCCCCCCCCcchhHHHHHHHHHH
Confidence 33333444444555555444444444 34555555554433222111000 000 1122335677788
Q ss_pred HHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHH
Q 037207 806 VEIEKVEKECAELVNSIGSETESKAKDRFLLAFMKYMK 843 (1989)
Q Consensus 806 ~~ve~~~~e~~el~~~~g~~~e~~akd~~l~~f~~~~q 843 (1989)
.+|++|+.|+..++.-+ ..++|.|...||..+.
T Consensus 198 ~~l~~lk~eR~~~~~~L-----k~~~dDI~~~ll~~~~ 230 (339)
T cd09235 198 EQVETIKAEREVIESEL-----KSATFDMKSKFLSALA 230 (339)
T ss_pred HHHHHHHHHHHHHHHHH-----HhcccccHHHHHHHHH
Confidence 88999999999887644 3448999999998663
No 60
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=40.13 E-value=17 Score=47.76 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=22.5
Q ss_pred cCCCCCCceEEecCC---CcEEEEeccccc
Q 037207 422 LGDRHLDNILLDFSS---GDIVHIDYNVCF 448 (1989)
Q Consensus 422 LGDRHPsNILIDr~T---GeVVHIDFG~cF 448 (1989)
=+|=||.||+++... |+++-+|||.+-
T Consensus 283 HaDpHPGNIlv~~~g~~~~~i~llDFGivg 312 (537)
T PRK04750 283 HADMHPGNIFVSYDPPENPRYIALDFGIVG 312 (537)
T ss_pred eCCCChHHeEEecCCCCCCeEEEEecceEE
Confidence 489999999998432 499999999875
No 61
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=38.92 E-value=21 Score=46.85 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=22.3
Q ss_pred cCCCCCCceEEecCCCcEEEEecccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
=+|=||.||+++ ..|+++-+|||..
T Consensus 288 HaDpHpGNi~v~-~~g~i~~lDfGi~ 312 (517)
T COG0661 288 HADPHPGNILVR-SDGRIVLLDFGIV 312 (517)
T ss_pred ccCCCccceEEe-cCCcEEEEcCcce
Confidence 489999999999 5599999999865
No 62
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=38.15 E-value=3.1e+02 Score=34.28 Aligned_cols=152 Identities=11% Similarity=0.136 Sum_probs=81.2
Q ss_pred HhcCCCcccCCchhhhhHhhhhHH------HHHHHHHHHHHHHHHHHHHHH-------HHHH---HHhhc---Ccccc-c
Q 037207 686 LVAGVPFSIVPEPTQVQCHDIDKD------VSQLIAELDHGLSSVFIALQA-------YSLA---LQRIL---PLNYL-T 745 (1989)
Q Consensus 686 ~~ag~p~~~~p~~~~~qc~~~d~E------~~qll~~r~~~l~~~l~~L~~-------Y~~~---~~~~~---P~sy~-~ 745 (1989)
...|.|-.-+|+.++..|+++-.. +.+.+.+...+...|.+.|.. =... ++..| |.|.. +
T Consensus 47 ~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~ 126 (337)
T cd09234 47 VMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHV 126 (337)
T ss_pred hhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhH
Confidence 444444223688888888888753 455555555555555555542 2111 11122 54443 2
Q ss_pred ---chhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhcCC--------CCcch--hhhHHHHHHHHHHHHHHHHHHH
Q 037207 746 ---TTAVHGWAQVLQLSANAPSVDILSLARRQATELIVRIHGD--------NHDSI--KQNHDDLRLKVEKYGVEIEKVE 812 (1989)
Q Consensus 746 ---~~~~~~W~~~l~~~~~~~s~d~~~~~~rq~~~~~a~~~~~--------~~~~~--~~~~~~~~~~~e~~~~~ve~~~ 812 (1989)
.......+..|+.+.+ |-..+...+++....+.=-.|. |..+. --.-...-.+|+....+|++|+
T Consensus 127 ~~l~~~~~k~~~~L~~A~~--sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk 204 (337)
T cd09234 127 TELKRELKKYKEAHEKASQ--SNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMR 204 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 2334555666666666 6667777777654222221110 00000 0011233556778888889999
Q ss_pred HHHHHHhhccCCchhhhhhHHHHHHHHHHH
Q 037207 813 KECAELVNSIGSETESKAKDRFLLAFMKYM 842 (1989)
Q Consensus 813 ~e~~el~~~~g~~~e~~akd~~l~~f~~~~ 842 (1989)
.++..++.-+ -+...+|.|...||...
T Consensus 205 ~eR~~l~~~L---k~k~~~DDI~~~ll~~~ 231 (337)
T cd09234 205 KQRRSLEQQL---RDAIHEDDITSKLVTTT 231 (337)
T ss_pred HHHHHHHHHH---HHHhhcCCchHHHHHhc
Confidence 9988776422 23455677777777654
No 63
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=38.05 E-value=21 Score=43.83 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=30.5
Q ss_pred hHHHHHhhcccC----CCCCCceEEecCCCcEEEEecccccc
Q 037207 412 AMSMVGHILGLG----DRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 412 VmSmVGYILGLG----DRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+.+.+.|+=+++ |--|+||||| .+|.+=-+|||+.=.
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD-~~G~iKitDFGFAK~ 193 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLD-QNGHIKITDFGFAKR 193 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeec-cCCcEEEEeccceEE
Confidence 456677876554 8899999999 899999999998854
No 64
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=37.85 E-value=21 Score=43.46 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=33.3
Q ss_pred CCCCCCceEEecCCCcEEEEecccc------cccCC-CCcCCCcCCccccHHH
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVC------FDKGQ-RLKVPEIVPFRLTQTI 468 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~c------FekGk-rL~vPE~VPFRLTrNI 468 (1989)
-|--|+|||+| .+|.|=-.|||+| +-+.. ---.|-..|=|++|+=
T Consensus 192 RDvKPSNILld-r~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~ 243 (361)
T KOG1006|consen 192 RDVKPSNILLD-RHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSD 243 (361)
T ss_pred ccCChhheEEe-cCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCcc
Confidence 47789999999 8999999999998 22221 1233666777888764
No 65
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=36.70 E-value=29 Score=34.98 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
||-+|+|||++. +|.+.-+||+.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999995 7999999999775
No 66
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=35.41 E-value=43 Score=37.62 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=33.3
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccc---cCCCCcCCCcCCccccHHHHH
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFD---KGQRLKVPEIVPFRLTQTIEA 470 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFe---kGkrL~vPE~VPFRLTrNIv~ 470 (1989)
=+|-.|+|||++ .+|++.-+|||.+.. ........-..|.=..|++..
T Consensus 121 H~dikp~NIl~~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 121 HRDIKPENILLD-ENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp ESSBSGGGEEES-TTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 468899999999 999999999999863 222222223344446677755
No 67
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=35.10 E-value=28 Score=40.75 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.3
Q ss_pred cCCCCCCceEEecCCCcEEEEeccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
=+|-+|.|||++. +|+|.-||||.+-
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~~ 190 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRGE 190 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCcc
Confidence 3699999999984 6899999999765
No 68
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=33.63 E-value=32 Score=38.00 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHhhcccCCCCCCceEEecC-CCcEEEEeccccc
Q 037207 416 VGHILGLGDRHLDNILLDFS-SGDIVHIDYNVCF 448 (1989)
Q Consensus 416 VGYILGLGDRHPsNILIDr~-TGeVVHIDFG~cF 448 (1989)
.-+.+-=||-||+||+++.. +|.+.-|||+.+-
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~ 205 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT 205 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence 45566779999999999965 4556789998653
No 69
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=33.18 E-value=3.8e+02 Score=33.71 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHhhhhHHHHHhhcccCCCCCCceEEecCCCcEEEEeccccccc
Q 037207 405 RYSESVAAMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 405 nFTrSLAVmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
+|=+-++....+.|+||..|-|-+||.-+ -+.-|-||+=..|..
T Consensus 135 ~yY~r~G~llal~y~L~~~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 135 RYYYRLGVLLALLYLLNGTDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccceEEe--CCCcEEEehhhhCCc
Confidence 34455677778899999999999999985 566788999888865
No 70
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=32.58 E-value=36 Score=39.20 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=23.1
Q ss_pred HhhcccCCCCCCceEEecCCCcEE-EEecccc
Q 037207 417 GHILGLGDRHLDNILLDFSSGDIV-HIDYNVC 447 (1989)
Q Consensus 417 GYILGLGDRHPsNILIDr~TGeVV-HIDFG~c 447 (1989)
.+.|-=||-||+|||++ .|++. -|||+.+
T Consensus 163 ~~~l~HGD~~~~Nvlv~--~~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQ--DGRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEE--CCCEEEEEeCccc
Confidence 45566699999999997 45664 8999976
No 71
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=32.54 E-value=54 Score=37.49 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.9
Q ss_pred CCCCCCceEEecCCCcEEEEeccccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
+|-.|+||+++ .+|.+.-+|||.+...
T Consensus 124 ~dlkp~Nill~-~~~~~kl~dfg~~~~~ 150 (269)
T cd05042 124 SDLALRNCQLT-ADLSVKIGDYGLALEQ 150 (269)
T ss_pred ccccHhheEec-CCCcEEEecccccccc
Confidence 89999999999 6899999999988653
No 72
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=32.27 E-value=51 Score=39.24 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHhhcccCCCCCCceEEecC---CCcEEEEeccccc
Q 037207 416 VGHILGLGDRHLDNILLDFS---SGDIVHIDYNVCF 448 (1989)
Q Consensus 416 VGYILGLGDRHPsNILIDr~---TGeVVHIDFG~cF 448 (1989)
..+++.=||-||+|||++.. +|.+.-|||.++=
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~ 212 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS 212 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence 57788999999999999954 6899999998763
No 73
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=31.68 E-value=62 Score=39.45 Aligned_cols=25 Identities=40% Similarity=0.698 Sum_probs=22.8
Q ss_pred cCCCCCCceEEecCCCcEEEEecccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
=||-.|+|||++ .+|.+.-+|||.+
T Consensus 124 HrDlkp~Nill~-~~~~ikL~DFG~a 148 (376)
T cd05598 124 HRDIKPDNILID-RDGHIKLTDFGLC 148 (376)
T ss_pred eCCCCHHHEEEC-CCCCEEEEeCCCC
Confidence 489999999998 7899999999986
No 74
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=31.29 E-value=96 Score=37.77 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+|-.|+|||++ .+|.+.-+|||.+-.
T Consensus 155 rDLkp~NILl~-~~~~ikL~DFG~a~~ 180 (340)
T PTZ00426 155 RDLKPENLLLD-KDGFIKMTDFGFAKV 180 (340)
T ss_pred cCCCHHHEEEC-CCCCEEEecCCCCee
Confidence 79999999998 789999999998753
No 75
>PRK05231 homoserine kinase; Provisional
Probab=31.24 E-value=36 Score=40.77 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.5
Q ss_pred cccCCCCCCceEEecCCCcE-EEEecccc
Q 037207 420 LGLGDRHLDNILLDFSSGDI-VHIDYNVC 447 (1989)
Q Consensus 420 LGLGDRHPsNILIDr~TGeV-VHIDFG~c 447 (1989)
+-=||=||+||+++ .|++ .-|||+.|
T Consensus 189 liHgD~~~~Nil~~--~~~~~~iIDf~~~ 215 (319)
T PRK05231 189 VIHADLFRDNVLFE--GDRLSGFIDFYFA 215 (319)
T ss_pred cCCCCCCCCcEEEE--CCceEEEEecccc
Confidence 45599999999998 4566 68999987
No 76
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=31.13 E-value=66 Score=41.96 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHhhhhHHHHHhh--cc--cCCCCCCceEEecCCCcEEEEeccccc
Q 037207 403 LKRYSESVAAMSMVGHI--LG--LGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 403 RknFTrSLAVmSmVGYI--LG--LGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+..+.+.++- .+.|+ .| =||-+|+|||+ .+|++.-||||.+-
T Consensus 430 ~~~~~~~i~~--~L~~lH~~giiHrDlkp~NILl--~~~~~~liDFGla~ 475 (535)
T PRK09605 430 NPELVRKVGE--IVAKLHKAGIVHGDLTTSNFIV--RDDRLYLIDFGLGK 475 (535)
T ss_pred HHHHHHHHHH--HHHHHHhCCCccCCCChHHEEE--ECCcEEEEeCcccc
Confidence 3444554442 33444 23 47999999999 58999999999875
No 77
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=31.11 E-value=59 Score=39.06 Aligned_cols=26 Identities=46% Similarity=0.819 Sum_probs=23.3
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
||-.|+|||++ .+|.+.=+|||.+..
T Consensus 120 ~dlkp~Nili~-~~~~~kL~Dfg~~~~ 145 (329)
T cd05588 120 RDLKLDNVLLD-AEGHIKLTDYGMCKE 145 (329)
T ss_pred cCCCHHHeEEC-CCCCEEECcCccccc
Confidence 89999999998 689999999998853
No 78
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=30.62 E-value=25 Score=45.87 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=42.0
Q ss_pred HhccchhhHHHHHHhhcCChhHHHHHHHHHHHh--hhhHHH--HHhhcccCCCCCCceEEecCCCcEEEEecccc
Q 037207 377 MKEVPRQLLHQEIWCASEGFKAFSLKLKRYSES--VAAMSM--VGHILGLGDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 377 ~ketP~dlL~r~Lw~~S~sse~w~~~RknFTrS--LAVmSm--VGYILGLGDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
|.-+|+.++.-.+...-.=.++|-. .|..- +|+-++ .|||= -|--|+|+||| .+|+|=-.|||.|
T Consensus 220 MEylPGGD~mTLL~~~~~L~e~~ar---fYiaE~vlAI~~iH~~gyIH--RDIKPdNlLiD-~~GHiKLSDFGLs 288 (550)
T KOG0605|consen 220 MEYLPGGDMMTLLMRKDTLTEDWAR---FYIAETVLAIESIHQLGYIH--RDIKPDNLLID-AKGHIKLSDFGLS 288 (550)
T ss_pred EEecCCccHHHHHHhcCcCchHHHH---HHHHHHHHHHHHHHHcCccc--ccCChhheeec-CCCCEeecccccc
Confidence 3446777766666655555566643 24433 233333 22322 36679999999 8999999999999
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.36 E-value=2e+03 Score=32.08 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=22.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037207 789 SIKQNHDDLRLKVEKYGVEIEKVEKECAELV 819 (1989)
Q Consensus 789 ~~~~~~~~~~~~~e~~~~~ve~~~~e~~el~ 819 (1989)
-..-.|.+.+.+|+.+++|+-.|+.+..++.
T Consensus 1714 dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1714 DLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3344577777888889999888888777663
No 80
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=30.21 E-value=62 Score=36.98 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.8
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
-||-+|+|||++...|.+.-+|||.+..
T Consensus 131 h~dl~p~nil~~~~~~~~~l~dfg~~~~ 158 (268)
T cd06624 131 HRDIKGDNVLVNTYSGVVKISDFGTSKR 158 (268)
T ss_pred ecCCCHHHEEEcCCCCeEEEecchhhee
Confidence 3899999999998889999999998754
No 81
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=29.58 E-value=45 Score=37.92 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHhhcccCCCCCCceEEecCCCcEEEEeccccc
Q 037207 416 VGHILGLGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 416 VGYILGLGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
..+++.=||-||+|||++..+|.+.-|||-++-
T Consensus 168 ~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~ 200 (235)
T cd05157 168 SPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG 200 (235)
T ss_pred CCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence 345677799999999999656889999998664
No 82
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=29.15 E-value=38 Score=40.03 Aligned_cols=30 Identities=23% Similarity=0.114 Sum_probs=23.1
Q ss_pred hhcccCCCCCCceEEecCCCcEEEEeccccc
Q 037207 418 HILGLGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 418 YILGLGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+.+-=||-||+|||++. ++.+.-|||..|-
T Consensus 175 ~~l~HgD~~~~Nil~~~-~~~~~iIDfe~a~ 204 (296)
T cd05153 175 RGVIHADLFRDNVLFDG-DELSGVIDFYFAC 204 (296)
T ss_pred CcCCccCcCcccEEEeC-CceEEEeehhhhc
Confidence 45566999999999983 4445689998764
No 83
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=28.63 E-value=76 Score=38.10 Aligned_cols=26 Identities=46% Similarity=0.823 Sum_probs=23.4
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+|-.|+|||++ .+|.+.-+|||.+..
T Consensus 120 rDlkp~Nili~-~~~~~kl~Dfg~~~~ 145 (327)
T cd05617 120 RDLKLDNVLLD-ADGHIKLTDYGMCKE 145 (327)
T ss_pred cCCCHHHEEEe-CCCCEEEecccccee
Confidence 78999999998 689999999998864
No 84
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=28.25 E-value=76 Score=39.02 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=22.5
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+|-.|+||||+ .+|.+.-+|||.+-
T Consensus 125 rDlKp~Nili~-~~~~~kL~DFGl~~ 149 (381)
T cd05626 125 RDIKPDNILID-LDGHIKLTDFGLCT 149 (381)
T ss_pred cCCcHHHEEEC-CCCCEEEeeCcCCc
Confidence 79999999998 68999999999874
No 85
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=28.12 E-value=34 Score=41.50 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=23.3
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+|-.|+||||+ .+|.+.-+|||.+-.
T Consensus 125 rDLkp~NIli~-~~~~vkL~DfG~~~~ 150 (360)
T cd05627 125 RDIKPDNLLLD-AKGHVKLSDFGLCTG 150 (360)
T ss_pred cCCCHHHEEEC-CCCCEEEeeccCCcc
Confidence 79999999998 689999999998753
No 86
>PRK12274 serine/threonine protein kinase; Provisional
Probab=28.10 E-value=45 Score=39.46 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCC-CCCceEEecCCCcEEEEecccccc
Q 037207 423 GDR-HLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDR-HPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+|- .|+|||++ ..|++.-||||.+-.
T Consensus 115 rDL~kp~NILv~-~~g~i~LIDFG~A~~ 141 (218)
T PRK12274 115 NDLAKEANWLVQ-EDGSPAVIDFQLAVR 141 (218)
T ss_pred CCCCCcceEEEc-CCCCEEEEECCCcee
Confidence 788 58999998 689999999998863
No 87
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=28.09 E-value=40 Score=39.28 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.0
Q ss_pred hcccCCCCCCceEEecCCCcEEEEecccc
Q 037207 419 ILGLGDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 419 ILGLGDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
++-=||-||.||+++ .+| +.-|||+.+
T Consensus 154 ~~~HgD~~~~Nii~~-~~~-~~iIDwe~a 180 (226)
T TIGR02172 154 TCLHGDFQIGNLITS-GKG-TYWIDLGDF 180 (226)
T ss_pred ceEecCCCCCcEEEc-CCC-cEEEechhc
Confidence 334699999999998 455 889999875
No 88
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=27.49 E-value=1.4e+02 Score=39.18 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=55.7
Q ss_pred HHHHHHHhhhHHHHHHHhcccCCCCCcCcC------CC--------chhhhhchhhHHHHHHhhhhhhhhccceeechhH
Q 037207 934 VEKCILVAGFVNELWQSIGRDMYDNDADIE------CP--------NYHFERNWASIFKTSLLACKTLVGQMTEVVLPDV 999 (1989)
Q Consensus 934 ~e~c~~~s~~~~el~~~~~~~~~~~~~~~~------~~--------~~~~~~~~a~~~~~~L~~~~~l~~~~~~iilPe~ 999 (1989)
+++--.|..|+.+|.+++|.+......+.. .+ ...........=...|.++..|..++..++.||-
T Consensus 348 ~~l~~im~~F~~qL~~LLGl~~~~~~~~~~~~~~~~~~~~~eld~l~r~r~~~~l~~a~~TL~SL~~L~~~i~~i~I~~~ 427 (517)
T PF10510_consen 348 EDLQPIMETFLSQLRQLLGLPSSPSSSGVTVEPSSTGSPPWELDSLLRRRTVENLASASSTLQSLAKLLDSIPNIVIPDE 427 (517)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHH
Confidence 366668999999999999998443322211 01 1111112344455679999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHhh
Q 037207 1000 MRSTISFNSEVMDAFGLVSQI 1020 (1989)
Q Consensus 1000 ~r~~~~~~~~vm~~~~~l~~i 1020 (1989)
++. .|..++..+.+.
T Consensus 428 V~~------~v~~al~~l~~a 442 (517)
T PF10510_consen 428 VAE------RVQQALEALEQA 442 (517)
T ss_pred HHH------HHHHHHHHHHHH
Confidence 998 556677777666
No 89
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=27.41 E-value=82 Score=37.63 Aligned_cols=26 Identities=42% Similarity=0.760 Sum_probs=23.1
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+|-.|+||||+ .+|.+.-+|||.+..
T Consensus 120 ~Dlkp~NIll~-~~~~~kL~DfG~~~~ 145 (325)
T cd05604 120 RDLKPENILLD-SQGHVVLTDFGLCKE 145 (325)
T ss_pred cCCCHHHeEEC-CCCCEEEeecCCccc
Confidence 79999999998 789999999998753
No 90
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=27.39 E-value=93 Score=36.66 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.7
Q ss_pred cccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 420 LGLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 420 LGLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+--||-+|+||+++ .+|.+.-+|||.+..
T Consensus 136 i~H~dL~p~Nili~-~~~~~kl~dfg~~~~ 164 (296)
T cd06655 136 VIHRDIKSDNVLLG-MDGSVKLTDFGFCAQ 164 (296)
T ss_pred cccCCCCHHHEEEC-CCCCEEEccCccchh
Confidence 34599999999998 689999999998764
No 91
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=27.31 E-value=1.5e+03 Score=29.69 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhh
Q 037207 708 KDVSQLIAELDHGLSSVFIALQAYSLALQRILPLNYLTTTAVHGWAQVLQLSAN---APSVDILSLARRQATELIVRI 782 (1989)
Q Consensus 708 ~E~~qll~~r~~~l~~~l~~L~~Y~~~~~~~~P~sy~~~~~~~~W~~~l~~~~~---~~s~d~~~~~~rq~~~~~a~~ 782 (1989)
..+.++..+...+-...++.|+.+.. +.|+++..+. +..|..-|+.+-. ..-.+.+...+.+++.+...+
T Consensus 208 ~~~e~~~~~Q~~l~~~r~~~L~~l~~----l~Pp~~t~~~-v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec 280 (473)
T PF14643_consen 208 QLLEQMRKEQVDLHEKRLELLQSLCD----LLPPNLTKEK-VEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQEC 280 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777778888887654 4688776544 9999887765543 344455555555555555444
No 92
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=25.97 E-value=86 Score=35.39 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.5
Q ss_pred ccCCCCCCceEEecCCCcEEEEecccccc
Q 037207 421 GLGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 421 GLGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
--||-.|+||+++ ..|.+.-+|||.+..
T Consensus 123 ~h~dl~p~ni~i~-~~~~~~l~d~g~~~~ 150 (262)
T cd06613 123 IHRDIKGANILLT-EDGDVKLADFGVSAQ 150 (262)
T ss_pred eecCCChhhEEEC-CCCCEEECccccchh
Confidence 3489999999999 789999999998764
No 93
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=25.56 E-value=2.4e+02 Score=30.64 Aligned_cols=60 Identities=32% Similarity=0.274 Sum_probs=46.8
Q ss_pred HHHHhcccCCHHHHhhhhHHHHHHhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHH
Q 037207 88 ARIAENATLSQSEKKKINAAKYSAMMAPIVVALERRLASTSRKPETPHEIWFHEEFGEQLKSAIL 152 (1989)
Q Consensus 88 aRl~~n~~Ls~~eK~~i~~~k~~aim~Piv~~Le~~~a~Ts~~peTphE~~F~k~yg~~L~~Aie 152 (1989)
.-|..|+.|++..|..+..+- --|+..|++.++..-..|-|+.-..|..+|...++..++
T Consensus 49 ~vc~Qnp~L~~~~R~~iirE~-----Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~~LiKNLFD 108 (113)
T PF12290_consen 49 AVCEQNPELEFSQRFQIIREA-----DAIVYDLEEVLASVWNQKATNEQIAFIEEFIGLIKNLFD 108 (113)
T ss_pred HHHccCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHH
Confidence 357789999999998765543 345677888888876677799999999999988876654
No 94
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.17 E-value=2.7e+03 Score=31.80 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=45.9
Q ss_pred ccCCCCCHHHHHHHH------------------HHHHHHHHHHHHHHHhhhccccccccccchhHHHhhhhhhhhhhhhc
Q 037207 1068 KGRDHLSWEEAEELA------------------SQEEACKAELNELHQTWNQRDMRSSSLMKQEADIRNALVSSERHFQS 1129 (1989)
Q Consensus 1068 ~~~~~~~~~~~~~~~------------------~~~~~~raq~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1989)
.-|.|++|++|..+. ..++.+|.|+++.++.+.+..-.++++.+.-.....-|...++.|+.
T Consensus 966 ~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 966 QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999997633 34455666677777777777777777666666666777778888887
Q ss_pred cc
Q 037207 1130 VI 1131 (1989)
Q Consensus 1130 ~~ 1131 (1989)
|-
T Consensus 1046 ~g 1047 (1486)
T PRK04863 1046 LG 1047 (1486)
T ss_pred cC
Confidence 73
No 95
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=24.64 E-value=56 Score=39.20 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=23.4
Q ss_pred hhcccCCCCCCceEEecCCCcEEEEecccc
Q 037207 418 HILGLGDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 418 YILGLGDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
+.+-=||=|++||+++. .|.+.-|||+.|
T Consensus 187 ~~l~HgD~~~~Nvl~~~-~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDG-DSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEEC-CceEEEeecccc
Confidence 45666999999999984 455679999887
No 96
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=24.51 E-value=98 Score=37.97 Aligned_cols=25 Identities=40% Similarity=0.694 Sum_probs=22.7
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+|-.|+||||+ .+|.+.-+|||.+-
T Consensus 125 rDlKp~NILl~-~~g~~kL~DFGla~ 149 (382)
T cd05625 125 RDIKPDNILID-RDGHIKLTDFGLCT 149 (382)
T ss_pred CCCCHHHEEEC-CCCCEEEeECCCCc
Confidence 79999999998 68999999999874
No 97
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.42 E-value=59 Score=38.08 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCCCCceEEecCCCcEEEEeccccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
||-.++||++. .|+++-||||...-.
T Consensus 116 GDLTtsNiIl~--~~~i~~IDfGLg~~s 141 (204)
T COG3642 116 GDLTTSNIILS--GGRIYFIDFGLGEFS 141 (204)
T ss_pred CCCccceEEEe--CCcEEEEECCccccc
Confidence 89999999996 566999999988633
No 98
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=24.11 E-value=56 Score=38.70 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.0
Q ss_pred HHhhcccCCCCCCceEEecCCCcEEEEeccccc
Q 037207 416 VGHILGLGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 416 VGYILGLGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
..+.+.=||-|++||+++. |.+.-|||+.|-
T Consensus 185 ~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~~ 215 (313)
T TIGR02906 185 KIRGFCHQDYAYHNILLKD--NEVYVIDFDYCT 215 (313)
T ss_pred CcCceEcCCCCcccEEEeC--CcEEEEECcccc
Confidence 3567788999999999985 789999999663
No 99
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=24.07 E-value=1.7e+02 Score=39.41 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=57.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHhhhhhhhhhhhhcccccc--ccc-----ccc
Q 037207 1068 KGRDHLSWEEAEELASQEEACKAELNELHQTWNQRDMRSSSLMKQEADIRNALVSSERHFQSVISAE--EFR-----EPH 1140 (1989)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~raq~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~ 1140 (1989)
++|--| -|+.+|++++.| +|+.|-.++|-.++..--.++.| .+||.-.+ +.. +|.
T Consensus 525 ~~rgiy----------see~L~~RF~~l-----~ki~rr~a~l~e~gg~lg~yf~s---l~Slfl~~~~q~g~~~~~~p~ 586 (657)
T KOG1854|consen 525 DTRGIY----------SEEDLRNRFNTL-----SKIARRTALLPEEGGFLGQYFLS---LQSLFLLSPQQLGNPVFLDPN 586 (657)
T ss_pred ccCCCC----------CHHHHHHHHHHH-----HHHHHHhhccCCCCchHHHHHHH---hhhheeecHhhcCCCccCCcc
Confidence 566666 378999999999 89999999999887555555554 23333333 222 223
Q ss_pred cchhhHHHHH--HhhhchhhhhHHHHhhhcccccCCCCCCCccch--hhhcccccccc
Q 037207 1141 ILRSKALLAI--LVKPFMELESVDKTLASFCESVGSIPYGTPKLA--DLINSGRSISE 1194 (1989)
Q Consensus 1141 ~~~g~~ll~~--~~~~F~~lE~l~~~L~~~~~~~~~~~~~~~~~~--d~i~~~~~~s~ 1194 (1989)
...-.-+|.= -.=.=.+|+.-.+.+..+. +|||++ |-|.++|.+=|
T Consensus 587 ~~d~~~iLsrA~~~~~~gdl~~Avr~v~lLk--------G~pr~va~dWi~daRr~lE 636 (657)
T KOG1854|consen 587 ITDTYKILSRARYHLLKGDLDDAVRVVNLLK--------GWPRKVARDWIKDARRRLE 636 (657)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHhc--------cchHHHHHHHHHHHHHHHH
Confidence 3222111110 0000112222334455555 899986 77888876533
No 100
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=23.73 E-value=63 Score=38.55 Aligned_cols=24 Identities=33% Similarity=0.363 Sum_probs=20.2
Q ss_pred cCCCCCCceEEecCCCcEEEEecccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVC 447 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~c 447 (1989)
=||-||+|++++ .|.|.-|||+.-
T Consensus 158 HGD~hpgNFlv~--~~~i~iID~~~k 181 (229)
T PF06176_consen 158 HGDPHPGNFLVS--NNGIRIIDTQGK 181 (229)
T ss_pred cCCCCcCcEEEE--CCcEEEEECccc
Confidence 389999999997 677999999643
No 101
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=23.29 E-value=1.1e+02 Score=35.67 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
||-.|+||+++ .+|.+.-+|||.+..
T Consensus 119 ~dikp~Nili~-~~~~~~l~Dfg~~~~ 144 (277)
T cd05607 119 RDMKPENVLLD-DQGNCRLSDLGLAVE 144 (277)
T ss_pred ccCChHhEEEc-CCCCEEEeeceeeee
Confidence 79999999998 689999999998764
No 102
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=22.95 E-value=47 Score=36.76 Aligned_cols=38 Identities=26% Similarity=0.605 Sum_probs=29.3
Q ss_pred HHHHHHhcccccccCCCCcccCHHHHHHHHHHHHcCchhhHhhccccccC
Q 037207 1939 SVLRRVEMKLDGRDIVENRNLSIAEQVDHLLKQATSVDNLCNMYEGWTPW 1988 (1989)
Q Consensus 1939 ~vl~RV~~KL~G~df~~~~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf 1988 (1989)
.-++-++++|.| +|++.+|.||-..=|+.+|-+-|.||
T Consensus 92 ~d~K~ledql~g------------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 92 PDVKKLEDQLQG------------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred hHHHHHHHHhcC------------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 334556666665 78888888888888888888888888
No 103
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=22.88 E-value=43 Score=42.02 Aligned_cols=35 Identities=34% Similarity=0.637 Sum_probs=27.6
Q ss_pred HHHHhhc--cc--CCCCCCceEEecCCCcEEEEecccccc
Q 037207 414 SMVGHIL--GL--GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 414 SmVGYIL--GL--GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
+.++|+= || .|--|+|||+| ..|+|.-.|||.|=.
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd-~~GHi~LtDFgL~k~ 174 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLD-EQGHIKLTDFGLCKE 174 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeec-CCCcEEEeccccchh
Confidence 3455553 22 58889999999 899999999999964
No 104
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.85 E-value=2.7e+03 Score=31.02 Aligned_cols=127 Identities=22% Similarity=0.285 Sum_probs=81.5
Q ss_pred hccchhhHHHHHHhhcC-ChhHHHHHHHHHHH--hhhhHHH--HHhhcccCCCCCCceEEecCCCcEEEEecccccc---
Q 037207 378 KEVPRQLLHQEIWCASE-GFKAFSLKLKRYSE--SVAAMSM--VGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFD--- 449 (1989)
Q Consensus 378 ketP~dlL~r~Lw~~S~-sse~w~~~RknFTr--SLAVmSm--VGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFe--- 449 (1989)
.-.|+.+|-. +..++. =+++|-.| |+. -+|+-|+ +|||= -|--||||||| ..|+|=-.|||-|.-
T Consensus 155 dY~pGGDllt-LlSk~~~~pE~~ArF---Y~aEiVlAldslH~mgyVH--RDiKPDNvLld-~~GHikLADFGsClkm~~ 227 (1317)
T KOG0612|consen 155 DYMPGGDLLT-LLSKFDRLPEDWARF---YTAEIVLALDSLHSMGYVH--RDIKPDNVLLD-KSGHIKLADFGSCLKMDA 227 (1317)
T ss_pred ecccCchHHH-HHhhcCCChHHHHHH---HHHHHHHHHHHHHhcccee--ccCCcceeEec-ccCcEeeccchhHHhcCC
Confidence 3345544443 222333 56777655 333 3455554 45653 47789999999 899999999999973
Q ss_pred cCC-CCcCCCcCCccccHHHHHHhccC-Cccc---------h------------HHHHHHHHHHHHhhChh---------
Q 037207 450 KGQ-RLKVPEIVPFRLTQTIEAALGLT-GIEG---------T------------FRANCEAVVSVLRKNKD--------- 497 (1989)
Q Consensus 450 kGk-rL~vPE~VPFRLTrNIv~ALGpt-GVEG---------~------------FRssceatmr~LRknkd--------- 497 (1989)
.|. +-.++=-.|==+.|.+..++|.. |--| + |..+.+.|+.-+..|++
T Consensus 228 dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~ 307 (1317)
T KOG0612|consen 228 DGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETD 307 (1317)
T ss_pred CCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccc
Confidence 342 34455556777899999999987 3332 2 34466777777766643
Q ss_pred ---HHHHHHHHHhhCCC
Q 037207 498 ---ILLMLLEVFVWDPL 511 (1989)
Q Consensus 498 ---~LlsLLEaFVrDPL 511 (1989)
..-++++.|+-||=
T Consensus 308 VSeeakdLI~~ll~~~e 324 (1317)
T KOG0612|consen 308 VSEEAKDLIEALLCDRE 324 (1317)
T ss_pred cCHHHHHHHHHHhcChh
Confidence 23467777776664
No 105
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=22.67 E-value=1.8e+02 Score=32.96 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=23.2
Q ss_pred cCCCCCCceEEecCCCcEEEEeccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
-||-+|+||+++ .+|.+.=+|||.+-
T Consensus 127 H~dl~p~nilv~-~~~~~~l~dfg~~~ 152 (263)
T cd06625 127 HRDIKGANILRD-SAGNVKLGDFGASK 152 (263)
T ss_pred cCCCCHHHEEEc-CCCCEEEeecccce
Confidence 389999999998 78999999999763
No 106
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=22.47 E-value=58 Score=40.54 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=20.8
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
||-||+|++++-.+.-+--|||++|-
T Consensus 202 ~D~~~~NVl~d~~~~~~g~iDFdDa~ 227 (331)
T COG2334 202 GDLHPDNVLFDDDTDVSGFIDFDDAG 227 (331)
T ss_pred cCCCccceeEcCCCCeeeEEEccccc
Confidence 89999999999665524458999884
No 107
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=22.27 E-value=68 Score=36.87 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=21.0
Q ss_pred CCCCCCceEEecCCCcEEEEecccccccC
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFDKG 451 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFekG 451 (1989)
||-++.|||++. |+++-||||-+++..
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS 157 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC
Confidence 899999999984 499999999888765
No 108
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.19 E-value=58 Score=50.36 Aligned_cols=54 Identities=33% Similarity=0.451 Sum_probs=39.3
Q ss_pred cchHhHHHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHcCchhhHhhccccccCC
Q 037207 1932 GKNAYAISVLRRVEMKLDGRDIVENRNLSIAEQVDHLLKQATSVDNLCNMYEGWTPWI 1989 (1989)
Q Consensus 1932 ~~N~~A~~vl~RV~~KL~G~df~~~~~LsV~~QVd~LI~qATs~~NLcqmY~GW~pf~ 1989 (1989)
..|+.-..|..||....+- . ..+.-...=+-.||.+|+|++|||||=+-|.||.
T Consensus 3497 ~v~~~v~~i~rrv~~~~~~---~-~ge~~~~~t~~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3497 MVNSNVDLIMRRVASLSSE---N-SGELPDNQTVIDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred hHHHHHHHHhhhhhhhccc---c-ccCCCCCccHHHHHHHhcChhhhhcCCccccccC
Confidence 5566667777788777762 1 1111222257889999999999999999999995
No 109
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=22.11 E-value=49 Score=40.26 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=22.6
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+|-.|+||||+ .+|.+.-+|||.+-
T Consensus 125 rDlKp~NILi~-~~~~vkL~DFGla~ 149 (363)
T cd05628 125 RDIKPDNLLLD-SKGHVKLSDFGLCT 149 (363)
T ss_pred cCCCHHHeEEC-CCCCEEEeeccCcc
Confidence 79999999998 68999999999874
No 110
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=22.10 E-value=1.2e+02 Score=35.76 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCcEEEEeccccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFDK 450 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFek 450 (1989)
-||-+|+||+++ ..|.+.-+|||.+...
T Consensus 139 H~dl~p~Nilv~-~~~~~~l~dfg~~~~~ 166 (292)
T cd06657 139 HRDIKSDSILLT-HDGRVKLSDFGFCAQV 166 (292)
T ss_pred cCCCCHHHEEEC-CCCCEEEcccccceec
Confidence 589999999998 6788988999987543
No 111
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=21.90 E-value=1.2e+02 Score=34.59 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+|-+|+||+++ .+|.+.=+|||.+.
T Consensus 126 ~dl~~~Nill~-~~~~~~l~dfg~~~ 150 (260)
T cd05069 126 RDLRAANILVG-DNLVCKIADFGLAR 150 (260)
T ss_pred cccCcceEEEc-CCCeEEECCCccce
Confidence 89999999998 78999999999874
No 112
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=21.84 E-value=1.2e+02 Score=36.49 Aligned_cols=26 Identities=50% Similarity=0.833 Sum_probs=23.2
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
||-.|+||||+ .+|.+.=+|||.+..
T Consensus 120 ~Dikp~Nili~-~~~~~kL~DfG~~~~ 145 (329)
T cd05618 120 RDLKLDNVLLD-SEGHIKLTDYGMCKE 145 (329)
T ss_pred CCCCHHHEEEC-CCCCEEEeeCCcccc
Confidence 79999999998 689999999998753
No 113
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=21.81 E-value=6e+02 Score=33.23 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=83.8
Q ss_pred hhhccchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhcchhhhhh-hHHH
Q 037207 547 QEIRVPLQEHHDLLLATLPAVELALERFADVLSQYELASALFYRADQERSNLVLHETSTKSMVAEANCNAEKIRA-SFEV 625 (1989)
Q Consensus 547 ~ei~~~lq~~~d~l~~~l~~a~~aL~~~l~~L~~~e~~s~~~~~~~~~~~~~l~~E~~v~~Lv~eA~~~~enl~~-~~~~ 625 (1989)
+.+..-+.-..-...+.+|...+.|...+++++.|..+..++..--+++. ..++.++=.|.+ +| |..+
T Consensus 285 Qsla~fl~i~~l~s~a~FP~~~~el~~~l~~V~~~~~vr~~ltaemAd~~------~~ik~llvrAED-----aRl~~d~ 353 (431)
T PF14782_consen 285 QSLASFLNITELSSVADFPDEMEELREILEKVDELNEVRQRLTAEMADHS------NLIKSLLVRAED-----ARLMGDM 353 (431)
T ss_pred HHHHHHhCCcccceeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHhhh-----HHHhhhH
Confidence 33333333333455678888888888888888887665555543334322 367889988887 33 3322
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccCCCCccchhHHHHhcCCCcccCCchhhhhH
Q 037207 626 Q--AREFAQAKAVVTEKAQEATTWMEQHGRILDALRGNLIPEINSCIKLSGSMDAFSLTSAVLVAGVPFSIVPEPTQVQC 703 (1989)
Q Consensus 626 ~--~~e~aqa~~~i~e~~~e~~~w~~qh~~~l~~l~~~~~~e~~~~~~l~~~~~~~~l~~~~~~ag~p~~~~p~~~~~qc 703 (1989)
. .+.+++..+.=.+-.++......-|...+.+|+. ++..++ +++=+-.|.|-+. ++..|
T Consensus 354 ~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l~~~lk~-----vn~~iq----------~a~~LRvG~~~~~----~v~~c 414 (431)
T PF14782_consen 354 KNMRKYYAELYDLNRDLINEYKIRCNNHEELLSSLKE-----VNQIIQ----------KASRLRVGKAKTQ----VVAAC 414 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHH----------HHhhhccCchHHH----HHHHH
Confidence 2 2667777777788888899999999999999987 444443 3333445777543 66667
Q ss_pred hhh
Q 037207 704 HDI 706 (1989)
Q Consensus 704 ~~~ 706 (1989)
.+.
T Consensus 415 R~A 417 (431)
T PF14782_consen 415 RAA 417 (431)
T ss_pred HHH
Confidence 654
No 114
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=21.59 E-value=1.3e+02 Score=40.29 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=30.4
Q ss_pred hHHHHHhhcccCCCCCCceEEecCCCcEEEEecccccccC
Q 037207 412 AMSMVGHILGLGDRHLDNILLDFSSGDIVHIDYNVCFDKG 451 (1989)
Q Consensus 412 VmSmVGYILGLGDRHPsNILIDr~TGeVVHIDFG~cFekG 451 (1989)
+-.+=+.=+=.+|-||+|||++..-|.|--+|||+.-+..
T Consensus 428 v~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~ 467 (612)
T KOG0603|consen 428 VDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELE 467 (612)
T ss_pred HHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCc
Confidence 3333333345789999999997788999999999877554
No 115
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=21.54 E-value=51 Score=39.36 Aligned_cols=25 Identities=40% Similarity=0.757 Sum_probs=22.6
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+|-.|+|||++ .+|.+.-+|||.+-
T Consensus 125 ~dlkp~Nill~-~~~~~kL~Dfg~~~ 149 (324)
T cd05587 125 RDLKLDNVMLD-AEGHIKIADFGMCK 149 (324)
T ss_pred cCCCHHHeEEc-CCCCEEEeecCcce
Confidence 79999999998 68999999999864
No 116
>PRK11768 serine/threonine protein kinase; Provisional
Probab=21.45 E-value=49 Score=40.46 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=23.5
Q ss_pred HHhhcccCCCCCCceEEecCCCcEEEEeccccc
Q 037207 416 VGHILGLGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 416 VGYILGLGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
..+++-=||-|++|||++ . .+.-|||++|-
T Consensus 194 ~~~~liHgD~h~~NvL~~-d--~~~iIDFDd~~ 223 (325)
T PRK11768 194 VRLLRLHGDCHPGNILWR-D--GPHFVDLDDAR 223 (325)
T ss_pred CCccceecCCCchhcccc-C--CcEEEeCCCCC
Confidence 456666799999999994 3 46679999874
No 117
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=21.35 E-value=66 Score=38.44 Aligned_cols=25 Identities=36% Similarity=0.723 Sum_probs=22.9
Q ss_pred CCCCCCceEEecCCCcEEEEeccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
+|-.|+||||+ .+|.+.=+|||.+-
T Consensus 120 rDikp~NIll~-~~~~~kL~Dfg~~~ 144 (325)
T cd05594 120 RDLKLENLMLD-KDGHIKITDFGLCK 144 (325)
T ss_pred cCCCCCeEEEC-CCCCEEEecCCCCe
Confidence 89999999998 78999999999874
No 118
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=21.06 E-value=1.6e+02 Score=34.06 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
-||-+|+||+++ .+|.+.-+|||....
T Consensus 124 H~dl~p~Nil~~-~~~~~~l~dfg~~~~ 150 (277)
T cd06640 124 HRDIKAANVLLS-EQGDVKLADFGVAGQ 150 (277)
T ss_pred CcCCChhhEEEc-CCCCEEEccccccee
Confidence 489999999998 789999999998743
No 119
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=20.97 E-value=1.3e+02 Score=35.99 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.4
Q ss_pred cCCCCCCceEEecCCCcEEEEeccccc
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCF 448 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cF 448 (1989)
-||-+|+||||+ .+|.+.=+|||.+-
T Consensus 125 H~Dlkp~NIll~-~~~~~kL~Dfg~a~ 150 (330)
T cd05601 125 HRDIKPENVLID-RTGHIKLADFGSAA 150 (330)
T ss_pred cccCchHheEEC-CCCCEEeccCCCCe
Confidence 389999999998 78999999999874
No 120
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=20.20 E-value=3.8e+02 Score=30.12 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=31.2
Q ss_pred cCCCCCCceEEecCCCcEEEEecccccccCC-CCcCCCcCCccccHHHH
Q 037207 422 LGDRHLDNILLDFSSGDIVHIDYNVCFDKGQ-RLKVPEIVPFRLTQTIE 469 (1989)
Q Consensus 422 LGDRHPsNILIDr~TGeVVHIDFG~cFekGk-rL~vPE~VPFRLTrNIv 469 (1989)
-||-+|+||+++ .+|.+.-+|||.+.-... .....-..|+-+.|+..
T Consensus 126 h~~l~~~ni~~~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~ 173 (256)
T cd08530 126 HRDLKSANILLV-ANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVW 173 (256)
T ss_pred cCCCCcceEEEe-cCCcEEEeeccchhhhccCCcccccCCccccCHHHH
Confidence 489999999999 589999999998764432 11112233445555554
No 121
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=20.03 E-value=56 Score=39.04 Aligned_cols=26 Identities=38% Similarity=0.700 Sum_probs=23.2
Q ss_pred CCCCCCceEEecCCCcEEEEecccccc
Q 037207 423 GDRHLDNILLDFSSGDIVHIDYNVCFD 449 (1989)
Q Consensus 423 GDRHPsNILIDr~TGeVVHIDFG~cFe 449 (1989)
||-.|+|||++ .+|.+.-+|||.+-.
T Consensus 120 ~dlkp~NIli~-~~~~~kL~DfG~~~~ 145 (320)
T cd05590 120 RDLKLDNVLLD-HEGHCKLADFGMCKE 145 (320)
T ss_pred CCCCHHHeEEC-CCCcEEEeeCCCCee
Confidence 89999999998 789999999998653
Done!