BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037210
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K +TLI+WG +D+ + +RL + + + DCGH E A +L++ F+
Sbjct: 228 IKAQTLIVWGRNDRFVPMDAGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFL 286
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63
+TLII G +DQ++ ++RL + A + CGH +E+ +L+VEF E
Sbjct: 215 ETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNE-- 272
Query: 64 ISEPQLVSQ 72
+ P+LV +
Sbjct: 273 ANTPKLVGR 281
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63
+TLII G +DQ++ ++RL + A + CGH +E+ +L+VEF E
Sbjct: 215 ETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNE-- 272
Query: 64 ISEPQLVSQ 72
+ P+LV +
Sbjct: 273 ANTPKLVGR 281
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
++QKTL++WG D ++ L+ + + + + GH ++EKP ++ V+F++
Sbjct: 146 IRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLR 205
Query: 61 E 61
Sbjct: 206 N 206
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K KT I WG DD+ + ++L + +A + CGH E +L+++F++
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K KT I WG DD+ + ++L + +A + CGH E +L+++F++
Sbjct: 222 IKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLR 281
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K KT I WG DD+ + ++L + +A + CGH E +L+++F++
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
++Q L+IWG +D++ A+ +P A + CGH VEK KL +EF+
Sbjct: 229 LRQPVLLIWGREDRVNPLDGALVALKTIPRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 287
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
++Q L+IWG +D++ A+ +P A + CGH VEK KL +EF+
Sbjct: 249 LRQPVLLIWGREDRVNPLDGALVALKTIPRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 307
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEF 58
L+I DD + L + LPN QIPD GHL E+P AV +++F
Sbjct: 235 LVIGFADDVVTPPYLGREVADALPNGRYLQIPDAGHLGFFERPEAVNTAMLKF 287
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 5 TLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+LI+ DD I + + +H LP + ++Q+ GH PH+ P +LI ++++
Sbjct: 213 SLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLK 268
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K KT I WG DD+ + ++L + +A + CG E +L+++F++
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGQWAQWEHADEFNRLVIDFLR 284
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K KT I WG DD+ + ++L + +A + CG E +L+++F++
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGQWAQWEHADEFNRLVIDFLR 284
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCIS 65
L++ E D ++ +++ + +P I DCGH +EKP V +++++++Q +
Sbjct: 488 LMVTAEKDIVLRPEMSKNMEKWIPFLKRGHIEDCGHWTQIEKPTEVNQILIKWLQTE-VQ 546
Query: 66 EPQLVSQ 72
P + S+
Sbjct: 547 NPSVTSK 553
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K KT I WG DD+ + ++L + +A + CG E +L+++F++
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGAWAQWEHADEFNRLVIDFLR 284
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
V+ TL++ G+DD+++ + A + + ++ IP CGH +E P A + F+
Sbjct: 221 VQVPTLVVQGKDDKVVPVETAYKFLDLIDDSWGYIIPHCGHWAMIEHPEDFANATLSFL 279
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCIS 65
L++ E D ++ +++ + +P+ I DCGH ++KP V +++++++ + +
Sbjct: 270 LMVTAEKDFVLVPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQILIKWLDSDARN 329
Query: 66 EP 67
P
Sbjct: 330 PP 331
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCIS 65
L++ E D ++ +++ + +P+ I DCGH ++KP V +++++++ + +
Sbjct: 489 LMVTAEKDFVLVPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQILIKWLDSDARN 548
Query: 66 EP 67
P
Sbjct: 549 PP 550
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 32.3 bits (72), Expect = 0.068, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 15 IISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62
++S L L CE +++ IP GHLP + P +V +I+ I+ +
Sbjct: 241 VVSEYLHANLGCE---SVVEVIPSDGHLPQLSSPDSVIPVILRHIRND 285
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 32.0 bits (71), Expect = 0.080, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 15 IISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62
++S L L CE +++ IP GHLP + P +V +I+ I+ +
Sbjct: 223 VVSEYLHANLGCE---SVVEVIPSDGHLPQLSSPDSVIPVILRHIRND 267
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 32.0 bits (71), Expect = 0.082, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 15 IISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62
++S L L CE +++ IP GHLP + P +V +I+ I+ +
Sbjct: 225 VVSEYLHANLGCE---SVVEVIPSDGHLPQLSSPDSVIPVILRHIRND 269
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+K TLI+ GE D+ ++A ++ +PN+ + I GH HVE +I+ F++
Sbjct: 206 IKVPTLILAGEYDEKFV-QIAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLK 264
Query: 61 E 61
E
Sbjct: 265 E 265
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62
L++ E D ++ +++ + +P+ I DCGH ++KP V +++++++ +
Sbjct: 285 LMVTAEKDFVLVPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQILIKWLDSD 341
>pdb|3IBT|A Chain A, Structure Of 1h-3-Hydroxy-4-Oxoquinoline 2,4-Dioxygenase
(Qdo)
Length = 264
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 34 RQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
R IP H P +E P AVA+ I EF+Q
Sbjct: 237 RHIPGRTHFPSLENPVAVAQAIREFLQ 263
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE DQ+ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDQV-TPNVARVIHEKIAGSELHVFRDCSHLTMWEDREGYNKLLSDFI 289
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 36 IPDCGHLPHVEKPGAVAKLIVEFIQENCISEP 67
+P CGH H + P VA+ + F+ + +EP
Sbjct: 268 LPQCGHAVHEDAPDKVAEAVATFLIRHRFAEP 299
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 28 LPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+P A + + PD GH P ++ P + ++E +Q
Sbjct: 280 IPQATLVEFPDLGHTPQIQAPERFHQALLEGLQ 312
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 36 IPDCGHLPHVEKPGAVAKLIVEFIQENCISEP 67
+P CGH H + P VA+ + F+ + +EP
Sbjct: 274 LPQCGHAVHEDAPDKVAEAVATFLIRHRFAEP 305
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62
L I G + +S + L + P A I GH H EKP AV + I ++ ++
Sbjct: 199 LFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLNDH 255
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62
L I G + +S + L + P A I GH H EKP AV + I ++ ++
Sbjct: 199 LFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLNDH 255
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
+ LI D + S ++ +PN+ + I GH H G + L++ FIQ
Sbjct: 217 ISTPALIFQSAKDSLASPEVGQYXAENIPNSQLELIQAEGHCLHXTDAGLITPLLIHFIQ 276
Query: 61 EN 62
N
Sbjct: 277 NN 278
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE D++ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDEV-TPNVARVIHEKIAGSELHVFRDCSHLTXWEDREGYNKLLSDFI 289
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE D++ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDEV-TPNVARVIHEKIAGSELHVFRDCSHLTMWEDREGYNKLLSDFI 289
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE D++ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDEV-TPNVARVIHEKIAGSELHVFRDCSHLTMWEDREGYNKLLSDFI 289
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE D++ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDEV-TPNVARVIHEKIAGSELHVFRDCSHLTMWEDREGYNKLLSDFI 289
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE D++ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDEV-TPNVARVIHEKIAGSELHVFRDCSHLTMWEDREGYNKLLSDFI 289
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59
+K TLI GE D++ + +A +H ++ + + DC HL E KL+ +FI
Sbjct: 232 IKIPTLITVGEYDEV-TPNVARVIHEKIAGSELHVFRDCSHLTMWEDREGYNKLLSDFI 289
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60
V+++T+ I G + + L L N + IP HL +VE P V + I I
Sbjct: 283 VRKRTIHIVGARSNWXPPQNQLFLQKTLQNYHLDVIPGGSHLVNVEAPDLVIERINHHIH 342
Query: 61 ENCISEP 67
E ++ P
Sbjct: 343 EFVLTSP 349
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 5 TLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIV 56
TL+I E D I + L +P A + +IP GH G +A++I+
Sbjct: 240 TLVIQAEHDPIAPAPHGKHLAGLIPTARLAEIPGMGHALPSSVHGPLAEVIL 291
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 7 IIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKP 48
II DD ++ + + LH LP++ P GH +V P
Sbjct: 205 IICASDDLLVPTACSSELHAALPDSQKXVXPYGGHACNVTDP 246
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVE 57
L+ G D+I+ ++ L L +A + + CGH +E+ A+ +++E
Sbjct: 229 LVFHGRQDRIVPLDTSLYLTKHLKHAELVVLDRCGHWAQLERWDAMGPMLME 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,037,993
Number of Sequences: 62578
Number of extensions: 60148
Number of successful extensions: 176
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 42
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)