Query 037210
Match_columns 73
No_of_seqs 102 out of 1141
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 09:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02965 Probable pheophorbida 99.6 6.5E-15 1.4E-19 81.1 7.7 62 1-62 192-253 (255)
2 TIGR03343 biphenyl_bphD 2-hydr 99.6 8.2E-15 1.8E-19 81.2 7.6 60 1-60 222-281 (282)
3 TIGR01738 bioH putative pimelo 99.6 1.7E-14 3.7E-19 77.6 7.2 59 1-59 187-245 (245)
4 PRK10349 carboxylesterase BioH 99.6 2.4E-14 5.1E-19 78.8 7.6 61 1-61 195-255 (256)
5 PLN02679 hydrolase, alpha/beta 99.5 4.2E-14 9.2E-19 81.5 7.4 62 1-62 291-357 (360)
6 PLN02824 hydrolase, alpha/beta 99.5 3.9E-14 8.5E-19 79.3 7.1 61 1-61 233-293 (294)
7 KOG1454 Predicted hydrolase/ac 99.5 7.8E-14 1.7E-18 79.7 7.8 61 2-62 264-324 (326)
8 TIGR03056 bchO_mg_che_rel puta 99.5 1.3E-13 2.8E-18 76.0 7.5 60 1-60 219-278 (278)
9 PRK10673 acyl-CoA esterase; Pr 99.5 1.5E-13 3.1E-18 75.3 7.7 61 1-61 194-254 (255)
10 PLN03087 BODYGUARD 1 domain co 99.5 1.5E-13 3.3E-18 81.7 7.7 61 1-61 417-478 (481)
11 TIGR03611 RutD pyrimidine util 99.5 2E-13 4.4E-18 74.1 7.6 60 1-60 197-256 (257)
12 PRK03592 haloalkane dehalogena 99.5 9.4E-14 2E-18 77.8 6.1 63 1-63 227-290 (295)
13 PRK03204 haloalkane dehalogena 99.5 1.6E-13 3.6E-18 76.9 7.0 58 2-59 227-285 (286)
14 TIGR02240 PHA_depoly_arom poly 99.5 3E-13 6.4E-18 75.3 7.6 62 1-63 206-267 (276)
15 PRK07581 hypothetical protein; 99.5 4.2E-13 9.2E-18 76.6 7.8 62 1-62 274-336 (339)
16 PRK00870 haloalkane dehalogena 99.5 1.8E-13 4E-18 76.9 6.2 61 1-62 238-301 (302)
17 PLN02578 hydrolase 99.5 6.4E-13 1.4E-17 76.4 7.9 59 1-60 295-353 (354)
18 PRK08775 homoserine O-acetyltr 99.5 3.7E-13 8.1E-18 77.1 6.8 63 1-63 276-340 (343)
19 PRK06489 hypothetical protein; 99.5 8.5E-13 1.8E-17 76.0 8.0 62 1-63 291-358 (360)
20 TIGR02427 protocat_pcaD 3-oxoa 99.4 7.8E-13 1.7E-17 71.3 7.3 60 1-60 192-251 (251)
21 PRK00175 metX homoserine O-ace 99.4 4.6E-13 1E-17 77.7 6.4 64 1-64 308-376 (379)
22 TIGR01392 homoserO_Ac_trn homo 99.4 4.5E-13 9.8E-18 76.9 5.2 60 1-60 287-351 (351)
23 PLN03084 alpha/beta hydrolase 99.4 2E-12 4.3E-17 75.3 7.6 59 1-60 324-382 (383)
24 PLN02385 hydrolase; alpha/beta 99.4 2.3E-12 5E-17 73.9 7.7 63 1-63 278-346 (349)
25 TIGR01250 pro_imino_pep_2 prol 99.4 3.1E-12 6.6E-17 70.3 7.4 59 1-60 230-288 (288)
26 PHA02857 monoglyceride lipase; 99.3 1.3E-11 2.8E-16 68.5 7.8 62 1-62 208-273 (276)
27 PLN02298 hydrolase, alpha/beta 99.3 1.9E-11 4E-16 69.6 7.5 65 1-65 250-320 (330)
28 TIGR03695 menH_SHCHC 2-succiny 99.3 1.4E-11 3E-16 66.3 6.6 59 1-60 193-251 (251)
29 PF12697 Abhydrolase_6: Alpha/ 99.3 7.3E-12 1.6E-16 66.5 5.4 54 1-54 175-228 (228)
30 KOG2382 Predicted alpha/beta h 99.3 1.6E-11 3.5E-16 69.6 6.2 61 2-62 253-313 (315)
31 PF00561 Abhydrolase_1: alpha/ 99.3 1.5E-11 3.2E-16 66.0 5.7 56 1-56 174-229 (230)
32 PRK06765 homoserine O-acetyltr 99.3 2.6E-11 5.7E-16 70.9 7.0 61 1-61 322-387 (389)
33 PLN02894 hydrolase, alpha/beta 99.3 5.1E-11 1.1E-15 69.8 7.9 62 1-63 324-386 (402)
34 PRK11126 2-succinyl-6-hydroxy- 99.3 2.3E-11 5.1E-16 66.2 6.1 55 1-61 187-241 (242)
35 PLN02980 2-oxoglutarate decarb 99.3 2.9E-11 6.2E-16 79.9 7.3 69 1-70 1567-1647(1655)
36 PLN02211 methyl indole-3-aceta 99.3 8.2E-11 1.8E-15 65.9 7.8 59 2-61 211-269 (273)
37 PRK10749 lysophospholipase L2; 99.2 4.8E-11 1E-15 68.2 6.8 62 1-62 258-329 (330)
38 KOG2984 Predicted hydrolase [G 99.2 1.7E-11 3.7E-16 66.3 4.5 62 1-62 215-276 (277)
39 PRK14875 acetoin dehydrogenase 99.2 4.7E-11 1E-15 68.6 6.1 58 1-61 313-370 (371)
40 PLN02652 hydrolase; alpha/beta 99.2 1.4E-10 3.1E-15 67.9 7.4 63 1-63 323-388 (395)
41 KOG4178 Soluble epoxide hydrol 99.2 1.2E-10 2.6E-15 66.3 6.6 62 1-62 257-320 (322)
42 PRK05855 short chain dehydroge 99.2 1.1E-10 2.4E-15 70.1 6.2 62 1-63 232-293 (582)
43 PLN02511 hydrolase 99.2 4.3E-11 9.4E-16 69.8 4.2 62 1-62 297-365 (388)
44 TIGR01249 pro_imino_pep_1 prol 99.0 1.9E-09 4.1E-14 61.1 6.9 56 2-60 248-303 (306)
45 KOG4409 Predicted hydrolase/ac 99.0 3.6E-09 7.7E-14 61.0 6.6 61 2-62 303-364 (365)
46 PRK10985 putative hydrolase; P 99.0 3.4E-09 7.3E-14 60.6 6.2 62 1-62 254-320 (324)
47 PRK05077 frsA fermentation/res 98.9 1.5E-08 3.3E-13 59.8 7.7 59 1-62 354-412 (414)
48 TIGR01607 PST-A Plasmodium sub 98.9 2.7E-08 5.9E-13 57.2 7.9 59 2-60 270-331 (332)
49 PRK07868 acyl-CoA synthetase; 98.9 1.8E-08 4E-13 64.6 7.3 64 1-64 296-363 (994)
50 COG0596 MhpC Predicted hydrola 98.8 4.3E-08 9.3E-13 52.5 7.4 59 1-59 220-279 (282)
51 PF08386 Abhydrolase_4: TAP-li 98.8 6.1E-08 1.3E-12 47.5 7.0 62 2-63 34-95 (103)
52 PF00326 Peptidase_S9: Prolyl 98.8 2.1E-08 4.5E-13 54.2 5.6 61 2-62 144-209 (213)
53 COG3208 GrsT Predicted thioest 98.8 3E-08 6.5E-13 54.8 6.1 60 1-61 175-235 (244)
54 PLN02872 triacylglycerol lipas 98.8 6.7E-08 1.5E-12 56.9 7.7 62 2-63 325-390 (395)
55 TIGR03100 hydr1_PEP hydrolase, 98.8 3.5E-08 7.7E-13 55.3 5.7 59 1-60 206-273 (274)
56 TIGR01836 PHA_synth_III_C poly 98.7 8.9E-08 1.9E-12 55.3 6.6 60 1-61 285-349 (350)
57 COG2267 PldB Lysophospholipase 98.7 1.6E-07 3.6E-12 53.5 7.0 63 1-63 227-295 (298)
58 TIGR01838 PHA_synth_I poly(R)- 98.6 9.6E-08 2.1E-12 58.1 5.5 49 1-49 414-462 (532)
59 COG1647 Esterase/lipase [Gener 98.6 2E-07 4.3E-12 51.2 5.4 61 1-61 180-243 (243)
60 KOG1552 Predicted alpha/beta h 98.5 3.4E-07 7.5E-12 51.0 5.2 63 1-64 191-254 (258)
61 PRK13604 luxD acyl transferase 98.5 4.9E-07 1.1E-11 51.8 5.7 45 1-45 201-247 (307)
62 PRK11071 esterase YqiA; Provis 98.5 8.1E-07 1.8E-11 47.7 6.2 54 2-60 136-189 (190)
63 COG1506 DAP2 Dipeptidyl aminop 98.5 7E-07 1.5E-11 55.2 6.3 63 1-63 550-617 (620)
64 PRK11460 putative hydrolase; P 98.5 7E-07 1.5E-11 49.2 5.5 58 2-59 148-209 (232)
65 PRK10566 esterase; Provisional 98.5 1.3E-06 2.9E-11 48.0 6.4 56 2-61 186-247 (249)
66 PF12695 Abhydrolase_5: Alpha/ 98.4 5.8E-07 1.3E-11 45.5 4.4 41 2-42 104-145 (145)
67 KOG1455 Lysophospholipase [Lip 98.4 1.1E-06 2.3E-11 50.2 5.4 62 1-62 245-312 (313)
68 KOG2551 Phospholipase/carboxyh 98.4 2.4E-06 5.2E-11 46.9 6.5 59 1-62 162-220 (230)
69 PF01738 DLH: Dienelactone hyd 98.4 1.8E-06 4E-11 46.9 5.8 61 1-61 144-216 (218)
70 COG0429 Predicted hydrolase of 98.3 1.5E-06 3.2E-11 50.2 4.6 62 1-62 273-340 (345)
71 KOG4391 Predicted alpha/beta h 98.2 4.1E-06 8.9E-11 46.3 4.8 62 2-64 221-284 (300)
72 KOG4667 Predicted esterase [Li 98.2 4.5E-06 9.8E-11 46.0 4.9 60 1-61 198-257 (269)
73 PF00450 Peptidase_S10: Serine 98.2 6E-06 1.3E-10 48.5 5.0 58 3-60 331-414 (415)
74 KOG2931 Differentiation-relate 98.1 2.3E-05 5.1E-10 44.8 6.5 62 1-63 245-307 (326)
75 PF02230 Abhydrolase_2: Phosph 98.1 1.3E-05 2.8E-10 43.6 5.2 56 2-61 155-214 (216)
76 PF03096 Ndr: Ndr family; Int 98.1 1.8E-05 3.8E-10 45.1 5.7 60 2-63 219-280 (283)
77 PF03959 FSH1: Serine hydrolas 98.1 3.9E-06 8.4E-11 45.7 2.7 47 1-48 160-207 (212)
78 PTZ00472 serine carboxypeptida 98.1 2.5E-05 5.5E-10 47.1 6.2 60 3-62 365-459 (462)
79 PF05705 DUF829: Eukaryotic pr 98.1 1.2E-05 2.6E-10 44.4 4.5 58 2-59 178-240 (240)
80 PF06821 Ser_hydrolase: Serine 98.0 2.2E-05 4.8E-10 41.7 4.3 45 2-47 114-158 (171)
81 PF10142 PhoPQ_related: PhoPQ- 98.0 5E-05 1.1E-09 44.7 6.0 60 1-63 261-321 (367)
82 TIGR01849 PHB_depoly_PhaZ poly 97.9 3.5E-05 7.6E-10 45.9 5.3 61 1-61 336-405 (406)
83 PF08840 BAAT_C: BAAT / Acyl-C 97.9 2.8E-05 6.1E-10 42.5 4.6 43 1-43 114-163 (213)
84 COG2945 Predicted hydrolase of 97.9 5.6E-05 1.2E-09 41.0 5.6 57 2-60 149-205 (210)
85 KOG3043 Predicted hydrolase re 97.9 8.7E-05 1.9E-09 41.1 6.1 61 1-61 163-239 (242)
86 PLN02213 sinapoylglucose-malat 97.9 0.00013 2.7E-09 42.2 6.9 58 3-61 234-316 (319)
87 PLN02209 serine carboxypeptida 97.8 0.00018 3.9E-09 43.3 7.0 58 3-61 352-434 (437)
88 PF05448 AXE1: Acetyl xylan es 97.8 0.00018 3.9E-09 41.7 6.4 58 1-61 261-319 (320)
89 COG1073 Hydrolases of the alph 97.8 0.00021 4.5E-09 39.7 6.3 60 3-62 233-297 (299)
90 PLN03016 sinapoylglucose-malat 97.8 0.00029 6.3E-09 42.4 7.2 59 3-62 348-431 (433)
91 KOG1282 Serine carboxypeptidas 97.8 0.00017 3.7E-09 43.6 6.1 61 3-63 364-449 (454)
92 PF09752 DUF2048: Uncharacteri 97.7 0.00014 3E-09 42.6 5.3 56 4-60 291-347 (348)
93 COG2021 MET2 Homoserine acetyl 97.7 0.00038 8.2E-09 41.0 6.6 61 1-61 305-367 (368)
94 KOG1838 Alpha/beta hydrolase [ 97.5 0.00038 8.3E-09 41.6 4.8 61 1-61 321-387 (409)
95 COG0400 Predicted esterase [Ge 97.5 0.00056 1.2E-08 37.5 5.1 55 2-61 146-204 (207)
96 PLN02442 S-formylglutathione h 97.5 0.0007 1.5E-08 38.5 5.6 43 2-44 217-264 (283)
97 COG0412 Dienelactone hydrolase 97.4 0.002 4.3E-08 35.9 7.1 62 1-62 157-233 (236)
98 KOG2564 Predicted acetyltransf 97.3 0.00018 3.8E-09 41.3 2.1 59 2-63 270-328 (343)
99 COG4757 Predicted alpha/beta h 97.3 0.0014 3E-08 36.9 5.1 59 1-59 215-280 (281)
100 COG3243 PhaC Poly(3-hydroxyalk 97.2 0.0013 2.7E-08 39.6 4.6 46 1-47 329-375 (445)
101 PRK05371 x-prolyl-dipeptidyl a 97.1 0.0042 9.2E-08 40.0 6.9 61 1-62 454-519 (767)
102 PF08538 DUF1749: Protein of u 97.1 0.00026 5.6E-09 40.8 1.5 60 1-60 231-303 (303)
103 PRK10162 acetyl esterase; Prov 97.1 0.0063 1.4E-07 35.2 6.9 60 3-62 249-315 (318)
104 TIGR01839 PHA_synth_II poly(R) 97.0 0.0033 7.2E-08 39.1 5.6 41 1-42 440-481 (560)
105 TIGR02821 fghA_ester_D S-formy 96.9 0.0081 1.8E-07 34.0 6.3 44 2-45 211-259 (275)
106 KOG3975 Uncharacterized conser 96.7 0.0083 1.8E-07 34.2 5.3 56 3-59 243-300 (301)
107 COG3571 Predicted hydrolase of 96.7 0.015 3.2E-07 31.3 5.9 61 1-62 141-211 (213)
108 COG3545 Predicted esterase of 96.7 0.0035 7.6E-08 33.7 3.5 58 3-61 118-178 (181)
109 KOG3253 Predicted alpha/beta h 96.7 0.0062 1.4E-07 38.5 4.9 44 1-44 303-347 (784)
110 PF02273 Acyl_transf_2: Acyl t 96.6 0.008 1.7E-07 34.2 4.7 48 1-49 194-243 (294)
111 PF06850 PHB_depo_C: PHB de-po 96.6 0.0094 2E-07 32.6 4.9 60 2-61 134-201 (202)
112 PF05728 UPF0227: Uncharacteri 96.6 0.025 5.4E-07 30.7 6.5 53 2-59 134-186 (187)
113 PF07859 Abhydrolase_3: alpha/ 96.5 0.0048 1.1E-07 33.2 3.3 42 3-44 167-210 (211)
114 PF00975 Thioesterase: Thioest 96.4 0.026 5.6E-07 30.7 5.7 56 3-59 169-229 (229)
115 PRK10115 protease 2; Provision 96.3 0.026 5.6E-07 36.1 6.2 44 2-45 605-656 (686)
116 KOG1551 Uncharacterized conser 96.3 0.019 4.1E-07 33.2 4.9 58 5-63 309-367 (371)
117 KOG1515 Arylacetamide deacetyl 96.1 0.026 5.6E-07 33.3 5.1 58 4-61 270-334 (336)
118 PF06342 DUF1057: Alpha/beta h 96.1 0.034 7.4E-07 32.2 5.3 58 2-59 212-296 (297)
119 PF03583 LIP: Secretory lipase 96.0 0.091 2E-06 30.3 6.9 44 2-45 219-267 (290)
120 PF06500 DUF1100: Alpha/beta h 95.7 0.079 1.7E-06 32.2 5.8 56 2-61 352-408 (411)
121 COG0657 Aes Esterase/lipase [L 95.4 0.16 3.5E-06 29.2 6.4 44 3-46 246-291 (312)
122 COG4287 PqaA PhoPQ-activated p 95.4 0.018 4E-07 34.6 2.5 58 1-61 328-386 (507)
123 PF06057 VirJ: Bacterial virul 95.3 0.073 1.6E-06 29.1 4.5 51 3-60 140-190 (192)
124 KOG2565 Predicted hydrolases o 95.2 0.049 1.1E-06 32.9 4.0 40 24-63 424-464 (469)
125 COG3458 Acetyl esterase (deace 95.0 0.17 3.7E-06 29.5 5.5 58 1-61 258-316 (321)
126 PF11339 DUF3141: Protein of u 94.9 0.19 4.1E-06 31.6 5.9 52 1-52 296-358 (581)
127 PF04301 DUF452: Protein of un 94.7 0.081 1.8E-06 29.4 3.8 37 6-45 169-205 (213)
128 PLN00021 chlorophyllase 94.1 0.15 3.2E-06 29.8 4.2 48 1-48 188-246 (313)
129 KOG2100 Dipeptidyl aminopeptid 94.1 0.37 7.9E-06 31.6 6.2 57 5-61 685-746 (755)
130 PF10230 DUF2305: Uncharacteri 94.1 0.24 5.1E-06 28.2 4.9 40 3-43 222-265 (266)
131 KOG2624 Triglyceride lipase-ch 94.0 0.51 1.1E-05 28.8 6.3 63 1-63 331-399 (403)
132 KOG2112 Lysophospholipase [Lip 93.7 0.25 5.4E-06 27.4 4.2 55 3-61 145-203 (206)
133 PF05576 Peptidase_S37: PS-10 93.0 0.15 3.3E-06 31.2 3.0 54 4-59 353-411 (448)
134 COG4188 Predicted dienelactone 92.9 0.07 1.5E-06 31.9 1.5 51 1-51 250-303 (365)
135 PF07519 Tannase: Tannase and 92.4 0.93 2E-05 28.2 5.8 61 3-63 354-428 (474)
136 KOG4627 Kynurenine formamidase 91.4 0.21 4.6E-06 28.1 2.2 46 1-46 206-251 (270)
137 smart00824 PKS_TE Thioesterase 91.1 0.18 3.9E-06 26.6 1.8 56 2-58 153-211 (212)
138 TIGR01840 esterase_phb esteras 90.6 0.32 7E-06 26.4 2.4 25 4-28 170-194 (212)
139 PRK10252 entF enterobactin syn 88.7 1 2.2E-05 30.8 4.0 46 2-48 1236-1281(1296)
140 COG2939 Carboxypeptidase C (ca 88.5 1 2.3E-05 28.2 3.7 29 33-62 463-491 (498)
141 PF02129 Peptidase_S15: X-Pro 88.5 2.8 6E-05 23.8 5.2 41 1-42 227-271 (272)
142 COG4553 DepA Poly-beta-hydroxy 88.4 1 2.2E-05 26.8 3.4 63 3-65 340-410 (415)
143 PF06028 DUF915: Alpha/beta hy 87.5 3.4 7.3E-05 23.7 5.1 56 3-59 185-252 (255)
144 KOG2521 Uncharacterized conser 86.9 4.9 0.00011 24.3 5.7 61 3-63 226-291 (350)
145 PRK04940 hypothetical protein; 84.6 4.8 0.0001 22.0 6.7 52 4-60 126-178 (180)
146 PF10503 Esterase_phd: Esteras 84.4 1.2 2.6E-05 24.9 2.3 25 3-27 170-194 (220)
147 COG3946 VirJ Type IV secretory 80.9 10 0.00022 23.7 5.3 48 4-60 398-447 (456)
148 PF12740 Chlorophyllase2: Chlo 79.2 6.5 0.00014 22.8 4.0 47 2-48 154-211 (259)
149 PF03403 PAF-AH_p_II: Platelet 77.9 3.3 7.2E-05 25.1 2.8 43 1-45 273-318 (379)
150 PF10605 3HBOH: 3HB-oligomer h 77.6 4.8 0.0001 26.3 3.4 42 2-43 555-604 (690)
151 PRK03995 hypothetical protein; 74.6 2.8 6.1E-05 24.3 1.8 43 1-44 140-194 (267)
152 PF05577 Peptidase_S28: Serine 73.1 4.7 0.0001 24.6 2.6 38 4-44 378-415 (434)
153 COG2830 Uncharacterized protei 70.3 3.6 7.8E-05 22.5 1.5 36 7-45 169-204 (214)
154 KOG1283 Serine carboxypeptidas 69.3 4.8 0.0001 24.4 2.0 29 30-58 382-410 (414)
155 PF06289 FlbD: Flagellar prote 69.2 9.4 0.0002 17.1 3.1 34 27-61 24-57 (60)
156 COG1582 FlgEa Uncharacterized 68.1 11 0.00023 17.2 4.3 44 18-63 16-59 (67)
157 cd02013 TPP_Xsc_like Thiamine 66.5 19 0.00041 19.6 3.9 39 3-41 72-110 (196)
158 PF12641 Flavodoxin_3: Flavodo 63.0 22 0.00047 19.0 5.6 58 5-62 42-99 (160)
159 cd02006 TPP_Gcl Thiamine pyrop 62.7 24 0.00051 19.3 4.1 40 3-42 76-115 (202)
160 PF13709 DUF4159: Domain of un 60.2 28 0.00061 19.4 5.5 38 2-39 53-90 (207)
161 COG1505 Serine proteases of th 58.9 51 0.0011 21.9 6.1 46 4-49 582-631 (648)
162 PF04414 tRNA_deacylase: D-ami 58.7 13 0.00028 21.0 2.3 42 2-44 89-143 (213)
163 cd02010 TPP_ALS Thiamine pyrop 56.7 30 0.00064 18.5 3.7 38 3-40 67-104 (177)
164 cd06896 PX_PI3K_C2_gamma The p 56.7 24 0.00052 17.5 2.9 42 22-63 41-82 (101)
165 PF13524 Glyco_trans_1_2: Glyc 56.7 13 0.00028 17.2 1.9 27 36-62 37-63 (92)
166 TIGR00067 glut_race glutamate 55.4 38 0.00082 19.4 5.1 41 19-59 12-53 (251)
167 cd02014 TPP_POX Thiamine pyrop 54.9 32 0.00069 18.3 3.7 39 3-41 70-108 (178)
168 PF06309 Torsin: Torsin; Inte 53.4 31 0.00068 17.8 3.5 51 13-63 66-117 (127)
169 TIGR03846 sulfopy_beta sulfopy 52.3 37 0.00081 18.3 3.4 39 3-41 60-99 (181)
170 PHA00026 cp coat protein 52.1 16 0.00035 18.1 1.8 33 32-64 6-38 (129)
171 cd03371 TPP_PpyrDC Thiamine py 51.5 39 0.00085 18.4 3.5 39 3-41 67-106 (188)
172 cd02004 TPP_BZL_OCoD_HPCL Thia 50.8 37 0.0008 17.9 4.4 39 3-41 67-105 (172)
173 PRK14866 hypothetical protein; 48.9 20 0.00043 22.7 2.2 44 1-45 145-199 (451)
174 PLN02733 phosphatidylcholine-s 48.9 16 0.00035 22.8 1.9 53 6-62 370-422 (440)
175 KOG2237 Predicted serine prote 47.4 82 0.0018 21.3 4.7 47 5-51 635-692 (712)
176 PRK00865 glutamate racemase; P 47.0 55 0.0012 18.8 5.2 40 19-58 19-59 (261)
177 PF14714 KH_dom-like: KH-domai 46.7 33 0.0007 16.1 3.0 27 2-28 38-64 (80)
178 COG1922 WecG Teichoic acid bio 46.5 59 0.0013 19.0 4.3 40 16-57 120-159 (253)
179 cd02002 TPP_BFDC Thiamine pyro 45.6 47 0.001 17.5 4.4 39 3-41 68-106 (178)
180 cd03372 TPP_ComE Thiamine pyro 44.6 51 0.0011 17.7 3.9 40 3-42 60-100 (179)
181 cd02003 TPP_IolD Thiamine pyro 44.5 54 0.0012 18.0 4.5 39 3-41 67-105 (205)
182 cd02005 TPP_PDC_IPDC Thiamine 44.2 52 0.0011 17.7 4.7 38 3-40 69-106 (183)
183 COG0746 MobA Molybdopterin-gua 44.1 55 0.0012 18.0 6.7 61 3-63 87-151 (192)
184 cd02015 TPP_AHAS Thiamine pyro 42.7 55 0.0012 17.5 4.2 38 3-40 69-106 (186)
185 cd06533 Glyco_transf_WecG_TagA 42.7 54 0.0012 17.5 4.2 31 6-37 49-79 (171)
186 cd08770 DAP_dppA_3 Peptidase M 42.4 71 0.0015 18.8 3.8 52 2-59 147-199 (263)
187 PRK05778 2-oxoglutarate ferred 41.8 76 0.0016 18.9 4.2 38 3-40 89-127 (301)
188 PF14417 MEDS: MEDS: MEthanoge 41.8 33 0.00072 18.6 2.2 27 36-62 16-43 (191)
189 cd03376 TPP_PFOR_porB_like Thi 41.3 68 0.0015 18.2 4.2 40 3-42 81-121 (235)
190 PF08384 NPP: Pro-opiomelanoco 41.2 18 0.00038 15.2 0.9 15 31-45 30-44 (45)
191 cd02009 TPP_SHCHC_synthase Thi 40.6 37 0.0008 18.1 2.3 38 3-40 69-106 (175)
192 cd02001 TPP_ComE_PpyrDC Thiami 40.3 58 0.0013 17.1 3.2 39 3-41 60-99 (157)
193 PF04951 Peptidase_M55: D-amin 39.8 80 0.0017 18.6 4.2 52 2-59 147-200 (265)
194 COG0693 ThiJ Putative intracel 39.6 60 0.0013 17.3 3.0 33 30-62 66-99 (188)
195 TIGR02069 cyanophycinase cyano 39.4 76 0.0017 18.2 6.5 52 6-62 2-55 (250)
196 cd08769 DAP_dppA_2 Peptidase M 39.2 82 0.0018 18.6 6.7 51 2-58 147-199 (270)
197 PRK09124 pyruvate dehydrogenas 37.9 1.1E+02 0.0024 19.7 4.3 39 3-41 427-465 (574)
198 PRK00099 rplJ 50S ribosomal pr 37.7 68 0.0015 17.1 3.5 30 1-30 74-103 (172)
199 COG0420 SbcD DNA repair exonuc 37.5 26 0.00057 21.1 1.6 18 2-19 75-92 (390)
200 COG2808 PaiB Transcriptional r 36.2 82 0.0018 17.9 3.1 59 3-61 72-133 (209)
201 KOG0109 RNA-binding protein LA 36.0 65 0.0014 19.5 2.9 53 3-56 1-54 (346)
202 TIGR00583 mre11 DNA repair pro 36.0 31 0.00066 21.4 1.7 16 2-17 110-125 (405)
203 PRK06276 acetolactate synthase 35.5 1.2E+02 0.0027 19.6 4.3 39 3-41 438-476 (586)
204 COG3910 Predicted ATPase [Gene 35.4 90 0.0019 17.9 3.4 36 28-63 193-228 (233)
205 cd03375 TPP_OGFOR Thiamine pyr 35.1 80 0.0017 17.2 4.6 39 3-41 70-109 (193)
206 COG0796 MurI Glutamate racemas 35.1 99 0.0021 18.3 5.2 40 18-57 18-58 (269)
207 cd03071 PDI_b'_NRX PDIb' famil 35.1 61 0.0013 16.5 2.4 56 3-61 55-113 (116)
208 TIGR03297 Ppyr-DeCO2ase phosph 34.7 83 0.0018 19.3 3.3 39 3-41 240-279 (361)
209 PRK12474 hypothetical protein; 34.2 1.3E+02 0.0027 19.2 4.7 39 3-41 408-446 (518)
210 PF03808 Glyco_tran_WecB: Glyc 33.5 81 0.0018 16.8 4.7 32 5-37 50-81 (172)
211 COG4099 Predicted peptidase [G 33.5 41 0.0009 20.5 1.9 21 2-22 315-335 (387)
212 PF10673 DUF2487: Protein of u 33.4 80 0.0017 16.7 3.2 31 30-61 49-79 (142)
213 PRK07282 acetolactate synthase 33.0 1.4E+02 0.003 19.3 4.6 38 3-40 437-474 (566)
214 PRK08611 pyruvate oxidase; Pro 32.8 1.4E+02 0.003 19.3 4.3 39 3-41 427-465 (576)
215 cd00568 TPP_enzymes Thiamine p 32.5 78 0.0017 16.3 4.3 39 3-41 65-103 (168)
216 PRK06457 pyruvate dehydrogenas 32.4 1.4E+02 0.003 19.2 4.1 39 3-41 416-454 (549)
217 PLN02573 pyruvate decarboxylas 31.3 1.2E+02 0.0027 19.7 3.8 39 3-41 447-485 (578)
218 cd05797 Ribosomal_L10 Ribosoma 30.9 87 0.0019 16.4 3.3 29 1-29 73-101 (157)
219 PRK06163 hypothetical protein; 30.9 1E+02 0.0022 17.1 3.4 39 3-41 76-115 (202)
220 PF02775 TPP_enzyme_C: Thiamin 30.6 29 0.00063 17.9 0.9 11 49-59 133-143 (153)
221 PHA02894 hypothetical protein; 30.2 21 0.00045 17.3 0.3 41 3-44 19-59 (97)
222 cd02008 TPP_IOR_alpha Thiamine 29.8 96 0.0021 16.5 4.1 39 3-41 70-109 (178)
223 TIGR03393 indolpyr_decarb indo 29.8 1.4E+02 0.0031 19.1 3.9 38 3-40 423-460 (539)
224 PRK07064 hypothetical protein; 29.7 1.5E+02 0.0034 18.9 4.0 39 3-41 424-462 (544)
225 KOG3170 Conserved phosducin-li 29.1 43 0.00094 19.1 1.4 13 2-14 161-173 (240)
226 PRK06546 pyruvate dehydrogenas 28.9 1.7E+02 0.0037 19.0 4.4 40 3-42 427-466 (578)
227 KOG3847 Phospholipase A2 (plat 28.7 1.5E+02 0.0033 18.4 5.3 57 2-60 287-346 (399)
228 PRK06048 acetolactate synthase 28.5 1.7E+02 0.0036 18.9 4.5 39 3-41 433-471 (561)
229 PRK06007 fliF flagellar MS-rin 28.5 59 0.0013 21.0 2.1 16 46-61 525-540 (542)
230 KOG1579 Homocysteine S-methylt 28.1 1.3E+02 0.0028 18.3 3.3 34 11-45 231-264 (317)
231 PRK07525 sulfoacetaldehyde ace 28.1 1.7E+02 0.0037 19.0 4.0 39 3-41 454-492 (588)
232 KOG2281 Dipeptidyl aminopeptid 28.0 2.1E+02 0.0045 19.8 6.3 58 4-61 804-866 (867)
233 TIGR02177 PorB_KorB 2-oxoacid: 27.8 1.4E+02 0.003 17.7 3.4 13 3-15 72-84 (287)
234 PRK08978 acetolactate synthase 27.7 1.7E+02 0.0037 18.7 4.4 38 3-40 420-457 (548)
235 cd03145 GAT1_cyanophycinase Ty 27.5 1.2E+02 0.0026 16.9 6.6 53 4-61 1-55 (217)
236 PRK08155 acetolactate synthase 27.1 1.8E+02 0.0039 18.8 4.6 39 3-41 438-476 (564)
237 PRK06466 acetolactate synthase 27.1 1.8E+02 0.0039 18.8 4.4 38 3-40 442-479 (574)
238 PRK08527 acetolactate synthase 27.1 1.8E+02 0.0039 18.8 4.8 39 3-41 433-471 (563)
239 PRK11867 2-oxoglutarate ferred 27.1 1.4E+02 0.0031 17.6 4.0 36 3-38 88-124 (286)
240 cd03148 GATase1_EcHsp31_like T 26.8 1.3E+02 0.0028 17.1 3.4 32 30-62 96-129 (232)
241 CHL00099 ilvB acetohydroxyacid 26.8 1.9E+02 0.0041 18.9 4.3 38 3-40 449-486 (585)
242 TIGR00118 acolac_lg acetolacta 26.5 1.8E+02 0.004 18.7 4.2 39 3-41 431-469 (558)
243 PHA02546 47 endonuclease subun 26.4 1.1E+02 0.0023 18.4 2.8 14 2-15 76-89 (340)
244 TIGR01504 glyox_carbo_lig glyo 26.3 1.9E+02 0.0042 18.9 4.3 39 3-41 437-475 (588)
245 PF10340 DUF2424: Protein of u 26.2 1.7E+02 0.0037 18.2 4.3 42 3-44 303-351 (374)
246 PF03295 Pox_TAA1: Poxvirus tr 25.9 79 0.0017 14.2 1.8 17 44-60 22-38 (63)
247 PRK08322 acetolactate synthase 25.9 1.9E+02 0.004 18.5 4.4 39 3-41 425-463 (547)
248 PLN02470 acetolactate synthase 25.8 2E+02 0.0042 18.8 4.4 38 3-40 445-482 (585)
249 PRK07449 2-succinyl-5-enolpyru 25.6 1.2E+02 0.0026 19.5 3.1 38 3-40 443-480 (568)
250 KOG0928 Pattern-formation prot 25.6 1.4E+02 0.003 22.1 3.4 46 8-56 674-719 (1386)
251 cd08663 DAP_dppA_1 Peptidase M 25.6 1.5E+02 0.0033 17.5 6.2 52 2-59 147-200 (266)
252 COG2382 Fes Enterochelin ester 25.3 1.7E+02 0.0036 17.7 3.6 46 9-60 246-293 (299)
253 PRK11269 glyoxylate carboligas 25.2 2E+02 0.0044 18.7 4.5 39 3-41 438-476 (591)
254 PRK06154 hypothetical protein; 25.1 2E+02 0.0044 18.7 4.2 38 3-40 450-487 (565)
255 PRK06456 acetolactate synthase 25.0 2E+02 0.0043 18.6 4.2 39 3-41 440-478 (572)
256 KOG3363 Uncharacterized conser 24.7 1.4E+02 0.0029 16.5 3.0 36 24-63 104-140 (196)
257 PRK07586 hypothetical protein; 24.5 1.8E+02 0.004 18.4 3.7 38 3-40 404-441 (514)
258 PRK07789 acetolactate synthase 24.5 2.1E+02 0.0046 18.7 4.3 38 3-40 466-503 (612)
259 PRK11869 2-oxoacid ferredoxin 24.4 1.6E+02 0.0036 17.4 3.5 35 3-38 79-115 (280)
260 PRK05858 hypothetical protein; 24.3 2E+02 0.0044 18.5 4.5 40 3-42 426-465 (542)
261 TIGR02418 acolac_catab acetola 24.3 2E+02 0.0044 18.4 4.5 39 3-41 427-465 (539)
262 PRK10966 exonuclease subunit S 24.2 1.2E+02 0.0027 18.8 2.8 25 2-26 74-98 (407)
263 COG0362 Gnd 6-phosphogluconate 24.1 37 0.00081 21.5 0.7 43 3-45 138-184 (473)
264 PRK09259 putative oxalyl-CoA d 24.1 2.1E+02 0.0045 18.5 4.4 38 3-40 442-479 (569)
265 TIGR03254 oxalate_oxc oxalyl-C 24.1 2.1E+02 0.0045 18.5 4.4 38 3-40 435-472 (554)
266 KOG0129 Predicted RNA-binding 23.9 2.2E+02 0.0048 18.7 4.1 58 4-61 371-437 (520)
267 TIGR00206 fliF flagellar basal 23.7 77 0.0017 20.7 2.0 16 46-61 538-553 (555)
268 PRK04923 ribose-phosphate pyro 23.7 1.1E+02 0.0024 18.4 2.5 38 3-40 5-42 (319)
269 TIGR00619 sbcd exonuclease Sbc 23.6 68 0.0015 18.3 1.6 15 3-17 76-90 (253)
270 PLN02606 palmitoyl-protein thi 23.2 1.9E+02 0.004 17.6 3.7 31 30-63 267-297 (306)
271 PRK07418 acetolactate synthase 23.0 2.3E+02 0.005 18.6 4.2 38 3-40 453-490 (616)
272 PRK08266 hypothetical protein; 22.6 2.2E+02 0.0048 18.2 4.5 39 3-41 421-459 (542)
273 PF13793 Pribosyltran_N: N-ter 22.6 63 0.0014 16.2 1.2 12 6-17 2-13 (116)
274 cd08163 MPP_Cdc1 Saccharomyces 22.6 1.7E+02 0.0037 16.9 3.5 12 3-14 85-96 (257)
275 TIGR00666 PBP4 D-alanyl-D-alan 22.4 71 0.0015 19.3 1.6 24 5-28 56-79 (345)
276 PRK07710 acetolactate synthase 22.0 2.3E+02 0.0051 18.3 3.9 38 3-40 443-480 (571)
277 PF08468 MTS_N: Methyltransfer 22.0 78 0.0017 16.8 1.5 37 5-45 100-136 (155)
278 COG1103 Archaea-specific pyrid 21.7 2E+02 0.0044 17.5 4.3 54 9-62 97-153 (382)
279 PF14582 Metallophos_3: Metall 21.5 78 0.0017 18.5 1.5 16 1-16 88-103 (255)
280 TIGR03457 sulphoacet_xsc sulfo 21.4 2.4E+02 0.0053 18.3 4.2 16 3-18 449-464 (579)
281 COG4566 TtrR Response regulato 21.4 94 0.002 17.6 1.8 14 1-14 75-88 (202)
282 PRK15450 signal transduction p 21.3 1.2E+02 0.0025 14.6 1.9 31 12-43 43-73 (85)
283 PRK11113 D-alanyl-D-alanine ca 21.3 80 0.0017 20.1 1.7 24 5-28 100-123 (477)
284 KOG3285 Spindle assembly check 21.2 65 0.0014 17.9 1.1 36 6-41 153-191 (203)
285 PRK02269 ribose-phosphate pyro 21.1 1.3E+02 0.0027 18.1 2.4 37 4-40 5-41 (320)
286 PRK08199 thiamine pyrophosphat 21.0 2.5E+02 0.0053 18.2 4.3 38 3-40 434-471 (557)
287 PF00466 Ribosomal_L10: Riboso 20.9 74 0.0016 15.1 1.3 13 2-14 76-88 (100)
288 PRK10439 enterobactin/ferric e 20.9 2.3E+02 0.0049 17.7 3.9 37 4-42 351-391 (411)
289 PRK08979 acetolactate synthase 20.8 2.5E+02 0.0055 18.2 4.2 15 4-18 441-455 (572)
290 cd00319 Ribosomal_S12_like Rib 20.7 90 0.002 15.4 1.5 14 32-45 48-61 (95)
291 PF09825 BPL_N: Biotin-protein 20.6 1.2E+02 0.0027 18.7 2.3 33 30-62 49-82 (367)
292 PF00164 Ribosom_S12_S23: Ribo 20.6 96 0.0021 16.0 1.6 13 33-45 63-75 (122)
293 PRK02458 ribose-phosphate pyro 20.5 1.4E+02 0.0029 18.1 2.5 39 3-41 8-46 (323)
294 PRK09107 acetolactate synthase 20.4 2.6E+02 0.0057 18.3 4.5 38 3-40 449-486 (595)
295 PF08416 PTB: Phosphotyrosine- 20.4 55 0.0012 16.8 0.8 24 41-64 101-126 (131)
No 1
>PLN02965 Probable pheophorbidase
Probab=99.61 E-value=6.5e-15 Score=81.15 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=58.6
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+++|+++++|++|..+++...+.+.+.+++.++.+++++||+++.|+|+.+++.+.+|++..
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999998764
No 2
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.60 E-value=8.2e-15 Score=81.24 Aligned_cols=60 Identities=30% Similarity=0.725 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|+.|..++.+..+.+.+.++++++..++++||+++.|+|+.+.+.+..|++
T Consensus 222 i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 222 IKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 579999999999999999999999999999999999999999999999999999999985
No 3
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.58 E-value=1.7e-14 Score=77.63 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=55.6
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 59 (73)
+++|+++++|++|..++.+..+.+.+.+++.++..++++||+++.++|+.+++.+.+|+
T Consensus 187 i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 187 ISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred CCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 57999999999999999998888899999999999999999999999999999999985
No 4
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.57 E-value=2.4e-14 Score=78.76 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=56.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+++|+++++|+.|.+++.+..+.+.+.+++.++..++++||+++.|+|+.+++.+..|-+.
T Consensus 195 i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 195 VSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred cCCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 5799999999999999998888999999999999999999999999999999999998653
No 5
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.54 E-value=4.2e-14 Score=81.47 Aligned_cols=62 Identities=23% Similarity=0.519 Sum_probs=54.2
Q ss_pred CCccEEEEEcCCCcccCHHH-----HHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKL-----AVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
|++|+++++|++|.+++... .+.+.+.+++.++..++++||+++.|+|+.+++.+..|+++.
T Consensus 291 i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 291 ISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred cCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhc
Confidence 57999999999999988652 345666788999999999999999999999999999999764
No 6
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.54 E-value=3.9e-14 Score=79.29 Aligned_cols=61 Identities=31% Similarity=0.408 Sum_probs=56.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+++|+++|+|+.|.+++.+..+.+.+..++.++..++++||+++.|+|+.+.+.+..|++.
T Consensus 233 i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 233 VKCPVLIAWGEKDPWEPVELGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred cCCCeEEEEecCCCCCChHHHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 5799999999999999988888888877778999999999999999999999999999965
No 7
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.53 E-value=7.8e-14 Score=79.73 Aligned_cols=61 Identities=49% Similarity=0.828 Sum_probs=57.9
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+||+++++|+.|.++|.+.++.+.+..|+++++.++++||.++++.|+.++..+..|++..
T Consensus 264 ~~pvlii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 264 KCPVLIIWGDKDQIVPLELAEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred CCceEEEEcCcCCccCHHHHHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999998889999999999999999999999999999999864
No 8
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.52 E-value=1.3e-13 Score=76.03 Aligned_cols=60 Identities=27% Similarity=0.459 Sum_probs=56.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|++|..++....+.+.+.+++.++..++++||+++.++|+.+++.+..|+.
T Consensus 219 i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 219 ITIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred CCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999999999999999999999973
No 9
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.52 E-value=1.5e-13 Score=75.30 Aligned_cols=61 Identities=26% Similarity=0.449 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+++|+++++|+.|..++.+..+.+.+.+++.++..++++||+++.++|+.+.+.+..|+..
T Consensus 194 ~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 194 WPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999999999965
No 10
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.50 E-value=1.5e-13 Score=81.75 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCc-cChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHV-EKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~~~ 61 (73)
|++|+++++|++|.++|++..+.+.+.+|+.++..++++||+++. ++|+.+++.+.+|+..
T Consensus 417 I~vPtLII~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 417 LKCDVAIFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 579999999999999999999999999999999999999999985 9999999999999965
No 11
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.50 E-value=2e-13 Score=74.12 Aligned_cols=60 Identities=27% Similarity=0.586 Sum_probs=56.3
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|++|..++.+..+.+.+.+++.++..++++||+++.++|+++++.+..|+.
T Consensus 197 i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 197 IQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred cCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 478999999999999999998999999999999999999999999999999999999985
No 12
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.50 E-value=9.4e-14 Score=77.79 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCccEEEEEcCCCcccCHH-HHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSK-LAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+++|+++|+|++|..+++. ..+.+.+..++.++..++++||+++.++|+.+++.+..|+.+..
T Consensus 227 i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 227 SDVPKLLINAEPGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred CCCCeEEEeccCCcccCcHHHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhc
Confidence 5789999999999999444 44444556778999999999999999999999999999998754
No 13
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.50 E-value=1.6e-13 Score=76.90 Aligned_cols=58 Identities=26% Similarity=0.599 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCcccCHH-HHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSK-LAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 59 (73)
++|+++|+|++|.++++. ..+.+.+.+|+.++..++++||++++|+|+.+++.+..|+
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 699999999999987544 5788899999999999999999999999999999999997
No 14
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.49 E-value=3e-13 Score=75.26 Aligned_cols=62 Identities=37% Similarity=0.546 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
|++|+++++|+.|.+++.+..+.+.+.+++.++..+++ ||+++.++|+.+++.+.+|+.+..
T Consensus 206 i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 206 IQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIIDD-GHLFLITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred CCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEcC-CCchhhccHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999975 999999999999999999998754
No 15
>PRK07581 hypothetical protein; Validated
Probab=99.47 E-value=4.2e-13 Score=76.57 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCC-CCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPD-CGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
|++|+++|+|+.|.+++....+.+.+.+++.++..+++ +||+++.++++.+...+..|+.+.
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 57999999999999999998899999999999999998 899999999999999999998763
No 16
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.47 E-value=1.8e-13 Score=76.94 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=54.3
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcE---EEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAI---IRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+++|+++|+|+.|..++... +.+.+.+++.+ +..++++||+++.++|+.+++.+.+|+++.
T Consensus 238 i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 238 WDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred CCCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 57999999999999998766 77888888765 788999999999999999999999999764
No 17
>PLN02578 hydrolase
Probab=99.46 E-value=6.4e-13 Score=76.42 Aligned_cols=59 Identities=25% Similarity=0.564 Sum_probs=55.1
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|++|.+++.+..+.+.+.+++.++..+ ++||+++.|+|+++++.+.+|+.
T Consensus 295 i~~PvLiI~G~~D~~v~~~~~~~l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 295 LSCPLLLLWGDLDPWVGPAKAEKIKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999888 58999999999999999999985
No 18
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.46 E-value=3.7e-13 Score=77.05 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=56.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCC-CCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPD-CGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
|++|+++++|+.|.+++....+.+.+.+ ++.++.++++ +||++++|+|+.+++.+.+|+....
T Consensus 276 I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 276 IRVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTG 340 (343)
T ss_pred CCCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhcc
Confidence 5799999999999999988888888877 6899999985 9999999999999999999997653
No 19
>PRK06489 hypothetical protein; Provisional
Probab=99.45 E-value=8.5e-13 Score=76.04 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=55.6
Q ss_pred CCccEEEEEcCCCcccCHHHH--HHHHhhCCCcEEEEeCCC----CccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLA--VRLHCELPNAIIRQIPDC----GHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
|++|+++|+|++|..++++.. +.+.+.+|+.++.+++++ ||+++ ++|+.+++.+..|+....
T Consensus 291 I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 291 IKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhcc
Confidence 689999999999999998764 778999999999999985 99997 899999999999997653
No 20
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.45 E-value=7.8e-13 Score=71.28 Aligned_cols=60 Identities=28% Similarity=0.481 Sum_probs=55.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|++|..++.+..+.+.+.+++.++..++++||+++.++|+.+.+.+..|++
T Consensus 192 ~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 192 IAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred cCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 478999999999999999988889999999999999999999999999999999999974
No 21
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.44 E-value=4.6e-13 Score=77.67 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCc----EEEEeC-CCCccCCccChHHHHHHHHHHHhhcCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNA----IIRQIP-DCGHLPHVEKPGAVAKLIVEFIQENCI 64 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~----~~~~~~-~~~H~~~~~~~~~~~~~~~~~~~~~~~ 64 (73)
|++|+++|+|++|.+++++..+.+.+.+++. ++..++ ++||++++++|+++++.+.+|+.+...
T Consensus 308 I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 308 IKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred CCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhhh
Confidence 5799999999999999999999999988876 677674 899999999999999999999987543
No 22
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.42 E-value=4.5e-13 Score=76.91 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=53.9
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEE-----EeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIR-----QIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
|++|+++|+|++|.+++++..+.+.+.+++.++. +++++||++++++|+.+++.+..|+.
T Consensus 287 I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 287 IKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred CCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 5799999999999999999999999999887654 56789999999999999999999973
No 23
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.41 E-value=2e-12 Score=75.33 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|+.|.+++.+..+.+.+. .+.++.+++++||+++.|+|+.+++.|..|+.
T Consensus 324 i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 324 WKTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred CCCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 478999999999999998888888776 47889999999999999999999999999985
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.41 E-value=2.3e-12 Score=73.94 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC--CCcEEEEeCCCCccCCccChHH----HHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL--PNAIIRQIPDCGHLPHVEKPGA----VAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~H~~~~~~~~~----~~~~~~~~~~~~~ 63 (73)
+++|+|+++|++|.+++....+.+.+.+ ++.++..++++||+++.++|+. +.+.+..|++...
T Consensus 278 i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 278 VSLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 5799999999999999999888888877 4689999999999999999886 7788899998754
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.39 E-value=3.1e-12 Score=70.31 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=52.9
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|+.|.. ++...+.+.+.+++.++..++++||+++.++|+.+.+.+..|++
T Consensus 230 i~~P~lii~G~~D~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 230 IKVPTLLTVGEFDTM-TPEAAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred cCCCEEEEecCCCcc-CHHHHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 478999999999985 55777888888899999999999999999999999999999974
No 26
>PHA02857 monoglyceride lipase; Provisional
Probab=99.34 E-value=1.3e-11 Score=68.55 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=54.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCCCCccCCccCh---HHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPDCGHLPHVEKP---GAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~~~~~ 62 (73)
+++|+++++|++|.+++.+..+.+.+.+ ++.++..++++||+++.|++ +++.+.+.+|++..
T Consensus 208 i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 208 IKTPILILQGTNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999988876 46889999999999998866 46888888999875
No 27
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.31 E-value=1.9e-11 Score=69.62 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=55.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCccChH----HHHHHHHHHHhhcCCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVEKPG----AVAKLIVEFIQENCIS 65 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~----~~~~~~~~~~~~~~~~ 65 (73)
+++|+|+++|++|.+++.+..+.+.+.++ +.++..+++++|+++.++|+ .+.+.+.+|+......
T Consensus 250 i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 250 VSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred cCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 57999999999999999999888887764 68999999999999998875 4667788898877543
No 28
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.31 E-value=1.4e-11 Score=66.25 Aligned_cols=59 Identities=31% Similarity=0.542 Sum_probs=51.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|+.|..++ ...+.+.+..++.++..++++||+++.++|+.+++.+.+|++
T Consensus 193 ~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 193 LTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred CCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 47899999999998764 556677878888999999999999999999999999999973
No 29
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.31 E-value=7.3e-12 Score=66.50 Aligned_cols=54 Identities=41% Similarity=0.631 Sum_probs=50.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKL 54 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 54 (73)
+++|+++++|+.|..++.+..+.+.+..+++++..++++||+++.++|++++++
T Consensus 175 ~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 175 IKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp SSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred cCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 478999999999999998899999999999999999999999999999998763
No 30
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=69.63 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=57.2
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
..||+++.|.++.+++.+....+.+.+|.+++..++++||+++.|+|+.+.+.+.+|+...
T Consensus 253 ~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 253 TGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred ccceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 5799999999999999998899999999999999999999999999999999999988654
No 31
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.28 E-value=1.5e-11 Score=66.03 Aligned_cols=56 Identities=34% Similarity=0.657 Sum_probs=52.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIV 56 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 56 (73)
+++|+++++|+.|.++|.+....+.+.+|+.++..++++||+.+.+.|+.+.+.+.
T Consensus 174 i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 174 IKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp TTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 57999999999999999999999999999999999999999999999999998875
No 32
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.28 E-value=2.6e-11 Score=70.86 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=55.1
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCC-CCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPD-CGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
|++|+++|+|+.|.+++++..+.+.+.++ +.++.++++ +||+.++++|+.+.+.+..|+.+
T Consensus 322 I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 322 IEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 57999999999999999988888888885 578888985 89999999999999999999965
No 33
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.27 E-value=5.1e-11 Score=69.80 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
|++|+++++|+.|.+.+ .....+.+.. +..++..++++||+++.|+|+.+++.+..|+....
T Consensus 324 I~vP~liI~G~~D~i~~-~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~ 386 (402)
T PLN02894 324 WKVPTTFIYGRHDWMNY-EGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYL 386 (402)
T ss_pred CCCCEEEEEeCCCCCCc-HHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhc
Confidence 57899999999998776 4444455544 35889999999999999999999999998887654
No 34
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.27 E-value=2.3e-11 Score=66.23 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=45.9
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+++|+++++|++|..+. . +.+. .+.++..++++||+++.|+|+++++.+..|+.+
T Consensus 187 i~~P~lii~G~~D~~~~-~----~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 187 LTFPFYYLCGERDSKFQ-A----LAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred cCCCeEEEEeCCcchHH-H----HHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 57999999999998553 1 2222 378899999999999999999999999999865
No 35
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.26 E-value=2.9e-11 Score=79.93 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=56.9
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC------------cEEEEeCCCCccCCccChHHHHHHHHHHHhhcCCCCCc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN------------AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCISEPQ 68 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (73)
|++|+|+|+|++|..++ ...+.+.+.+++ .++..++++||++++|+|+.+++.+..|+.+....++.
T Consensus 1567 I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~~~~~~~ 1645 (1655)
T PLN02980 1567 CDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRLHNSSTP 1645 (1655)
T ss_pred CCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhccccCCC
Confidence 57899999999999875 555566666554 47899999999999999999999999999987766554
Q ss_pred cc
Q 037210 69 LV 70 (73)
Q Consensus 69 ~~ 70 (73)
..
T Consensus 1646 ~~ 1647 (1655)
T PLN02980 1646 GE 1647 (1655)
T ss_pred ch
Confidence 43
No 36
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.25 E-value=8.2e-11 Score=65.85 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
++|+++|.|++|..+|++..+.+.+.+++.++..++ +||.+++++|+.+.+.|.++...
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDHSPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCCCccccCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999888999996 89999999999999999988654
No 37
>PRK10749 lysophospholipase L2; Provisional
Probab=99.24 E-value=4.8e-11 Score=68.20 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=51.9
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC-------CCcEEEEeCCCCccCCccCh---HHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL-------PNAIIRQIPDCGHLPHVEKP---GAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~~~~~ 62 (73)
+++|+|+++|+.|.+++.+..+.+.+.+ ++.++..++|+||.++.|.+ +.+.+.+..|+.+.
T Consensus 258 i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 258 ITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred CCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 5789999999999999998888777754 34589999999999998765 66788888998764
No 38
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.24 E-value=1.7e-11 Score=66.33 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=57.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
++||+++++|+.|++++...+..+....+..++..++.++|.+++..+++|+..+.+|++..
T Consensus 215 vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 215 VKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred ccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhcc
Confidence 58999999999999999888888888888899999999999999999999999999999764
No 39
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.22 E-value=4.7e-11 Score=68.55 Aligned_cols=58 Identities=33% Similarity=0.680 Sum_probs=50.1
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
++||+++++|++|..++....+.+ .++.++..++++||++++++|+.+++.+.+|+.+
T Consensus 313 i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 313 LAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 479999999999999987765443 3467889999999999999999999999999864
No 40
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.20 E-value=1.4e-10 Score=67.94 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=55.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCcc-ChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVE-KPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~ 63 (73)
|++|+|+++|++|.+++.+..+.+++..+ +.++..+++++|.++.+ .++++.+.+.+|+....
T Consensus 323 I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 323 VTVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999898888764 47899999999998776 89999999999998754
No 41
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.19 E-value=1.2e-10 Score=66.29 Aligned_cols=62 Identities=26% Similarity=0.441 Sum_probs=53.2
Q ss_pred CCccEEEEEcCCCcccCHH-HHHHHHhhCCCc-EEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSK-LAVRLHCELPNA-IIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
|++|+++++|+.|.+.+.. ..+.+.+.++.. +..+++|+|||++.|+|+++++.+.+|+++.
T Consensus 257 i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 257 ITIPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccceEEEEecCcccccchhHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhh
Confidence 5789999999999998755 455666677775 6788899999999999999999999999764
No 42
>PRK05855 short chain dehydrogenase; Validated
Probab=99.17 E-value=1.1e-10 Score=70.11 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+++|+++++|++|.+++....+.+.+..++.++..++ +||+++.++|+.+.+.+.+|+....
T Consensus 232 ~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 232 TDVPVQLIVPTGDPYVRPALYDDLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred ccCceEEEEeCCCcccCHHHhccccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhcc
Confidence 4789999999999999998888888888888888876 6999999999999999999998754
No 43
>PLN02511 hydrolase
Probab=99.17 E-value=4.3e-11 Score=69.83 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=52.2
Q ss_pred CCccEEEEEcCCCcccCHHHH-HHHHhhCCCcEEEEeCCCCccCCccChHH------HHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLA-VRLHCELPNAIIRQIPDCGHLPHVEKPGA------VAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~H~~~~~~~~~------~~~~~~~~~~~~ 62 (73)
|++|+++|+|++|++++.... ....+..++.++..++++||+.++|+|+. +.+.+.+|+...
T Consensus 297 I~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 297 VRVPLLCIQAANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred CCCCeEEEEcCCCCcCCcccCcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHH
Confidence 579999999999999987643 44566788999999999999999998864 588898998664
No 44
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.03 E-value=1.9e-09 Score=61.05 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=46.1
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
++|+++++|++|.++|.+..+.+.+.+++.++..++++||+++.+ ...+.+..|+.
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~i~~~~~ 303 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAFDP---NNLAALVHALE 303 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCCCh---HHHHHHHHHHH
Confidence 589999999999999999999999999999999999999998632 23444555554
No 45
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.98 E-value=3.6e-09 Score=60.96 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=48.8
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHh-hCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHC-ELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
.||+++|+|++|.+-.....+.-.+ ....++...++++||+++.++|+.|++.+.+++++.
T Consensus 303 ~~pv~fiyG~~dWmD~~~g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 303 DVPVTFIYGDRDWMDKNAGLEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred CCCEEEEecCcccccchhHHHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 4899999999987766554433333 234588999999999999999999999999998753
No 46
>PRK10985 putative hydrolase; Provisional
Probab=98.96 E-value=3.4e-09 Score=60.59 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=51.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccCh-----HHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKP-----GAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~-----~~~~~~~~~~~~~~ 62 (73)
|++|+++|+|++|.+++.+..+.+.+..++.++..++++||+.+.+.. .+.-+.+.+|+...
T Consensus 254 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 254 IRKPTLIIHAKDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCCCEEEEecCCCCCCChhhChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 578999999999999998877777777888999999999999998742 46777888888654
No 47
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.91 E-value=1.5e-08 Score=59.81 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+++|+|+++|++|.++|.+..+.+.+..++.++..++++ +..+.++.+...+..|+.+.
T Consensus 354 i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 354 CPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999998888999999999986 45579999999999999763
No 48
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.88 E-value=2.7e-08 Score=57.22 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=51.2
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC--CCcEEEEeCCCCccCCcc-ChHHHHHHHHHHHh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL--PNAIIRQIPDCGHLPHVE-KPGAVAKLIVEFIQ 60 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~ 60 (73)
++|+++++|++|.+++.+..+.+.+.. ++.++..+++++|.++.| .++.+.+.+..|+.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 589999999999999998888887655 468899999999999987 47889999999985
No 49
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.86 E-value=1.8e-08 Score=64.58 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=56.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEE-EEeCCCCccCCcc---ChHHHHHHHHHHHhhcCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAII-RQIPDCGHLPHVE---KPGAVAKLIVEFIQENCI 64 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~---~~~~~~~~~~~~~~~~~~ 64 (73)
|++|+++++|+.|.+++++..+.+.+.+++.++ ..++++||+.++. -++.++..+.+|+.....
T Consensus 296 i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~ 363 (994)
T PRK07868 296 ITCPVLAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEG 363 (994)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhcc
Confidence 578999999999999999999999999998886 6778999998764 677899999999987653
No 50
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.83 E-value=4.3e-08 Score=52.46 Aligned_cols=59 Identities=46% Similarity=0.794 Sum_probs=49.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccChHHHHHHHHHHH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 59 (73)
+++|+++++|+.|...+......+.+..+. .++..++++||+++.++|+.+.+.+..++
T Consensus 220 ~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~ 279 (282)
T COG0596 220 ITVPTLIIHGEDDPVVPAELARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFL 279 (282)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHH
Confidence 468999999999966776555666777775 88999999999999999999988888743
No 51
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.82 E-value=6.1e-08 Score=47.49 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=52.8
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
..|+|++.++.|+.+|.+.++.+.+.+++.+++.+++.||......-.=+.+++..||.+..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~G~ 95 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLDGT 95 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHcCC
Confidence 36999999999999999999999999999999999999999885333345778888887653
No 52
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.81 E-value=2.1e-08 Score=54.20 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEeCCCCccCC-ccChHHHHHHHHHHHhhc
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQIPDCGHLPH-VEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~~~~~~ 62 (73)
++|+|+++|++|..++......+.+.+ .+.++..++++||.+. .+....+.+.+.+|++..
T Consensus 144 ~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 144 KPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 689999999999999988766665544 3488999999999655 455667788888998764
No 53
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.81 E-value=3e-08 Score=54.80 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=53.9
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC-CcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP-NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
++||+.++.|++|..++.+....|.+... ..++..|+ ||||+..++.+.+...+...+..
T Consensus 175 l~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fd-GgHFfl~~~~~~v~~~i~~~l~~ 235 (244)
T COG3208 175 LACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFD-GGHFFLNQQREEVLARLEQHLAH 235 (244)
T ss_pred cCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEec-CcceehhhhHHHHHHHHHHHhhh
Confidence 57999999999999999999999998886 58999998 59999999999999999888854
No 54
>PLN02872 triacylglycerol lipase
Probab=98.79 E-value=6.7e-08 Score=56.92 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCcc---CCccChHHHHHHHHHHHhhcC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHL---PHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~---~~~~~~~~~~~~~~~~~~~~~ 63 (73)
++|+++++|++|.++++...+.+.+.+++ .++..+++.+|. ...+.|+.+.+.+.+|+++..
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 57999999999999999888888888877 678889999996 445899999999999998643
No 55
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.76 E-value=3.5e-08 Score=55.33 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCccEEEEEcCCCcccCHHHH------HHHHhhC--CCcEEEEeCCCCccCCc-cChHHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKLA------VRLHCEL--PNAIIRQIPDCGHLPHV-EKPGAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~------~~~~~~~--~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~~ 60 (73)
+++|+++++|+.|...+ ... ..+.+.+ +++++..+++++|++.. +.++.+.+.+.+|++
T Consensus 206 ~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 206 FQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred cCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 46899999999998764 322 4445544 78999999999999954 466899999999985
No 56
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.72 E-value=8.9e-08 Score=55.29 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=49.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCccC---hHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVEK---PGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~---~~~~~~~~~~~~~~ 61 (73)
+++|+++++|++|.++++...+.+.+.++ +.++..++ +||+.++.+ ++.++..+.+|+..
T Consensus 285 i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 285 IKMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 57999999999999999998888888876 35677776 699987654 47888999999865
No 57
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.69 E-value=1.6e-07 Score=53.49 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCcccC-HHHHHHHHhhC--CCcEEEEeCCCCccCCcc-Ch--HHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIIS-SKLAVRLHCEL--PNAIIRQIPDCGHLPHVE-KP--GAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~H~~~~~-~~--~~~~~~~~~~~~~~~ 63 (73)
+++|+++++|+.|.+++ .+....+.+.. +++++..++|+.|.++.| +. +.+.+.+..|+....
T Consensus 227 ~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 227 IALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred ccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 47899999999999999 57666666554 567899999999999876 55 788888999987754
No 58
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.65 E-value=9.6e-08 Score=58.08 Aligned_cols=49 Identities=27% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPG 49 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~ 49 (73)
|++|++++.|+.|.+++.+.++.+.+.+++.....++++||..++++|.
T Consensus 414 I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 414 VKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred CCCCEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 6899999999999999999999999999988888999999998887764
No 59
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.60 E-value=2e-07 Score=51.17 Aligned_cols=61 Identities=15% Similarity=0.360 Sum_probs=53.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCc-cChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHV-EKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~~~ 61 (73)
|..|++++-|++|++++.+.+..+..... +.++..++++||.... ++.+.+.+.+..||++
T Consensus 180 I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 180 IYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred cccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 56899999999999999999999988773 4789999999999865 4888999999999863
No 60
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.53 E-value=3.4e-07 Score=51.04 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=51.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccChHHHHHHHHHHHhhcCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCI 64 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 64 (73)
|+||+++++|..|++++....+.+.+..++ .+...+.|+||.-..-.|+ +.+.+..|++....
T Consensus 191 i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~~~~~~-yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 191 ITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDIELYPE-YIEHLRRFISSVLP 254 (258)
T ss_pred ccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCcccccCHH-HHHHHHHHHHHhcc
Confidence 579999999999999999999999999876 4767778999996665554 56668888876543
No 61
>PRK13604 luxD acyl transferase; Provisional
Probab=98.51 E-value=4.9e-07 Score=51.79 Aligned_cols=45 Identities=7% Similarity=0.046 Sum_probs=40.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHV 45 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~ 45 (73)
+++|+|+|+|+.|.+++.+.++.+.+.++ ++++..++|++|.+..
T Consensus 201 l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 201 LDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLGE 247 (307)
T ss_pred cCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCccccCc
Confidence 46899999999999999999999988775 6899999999998654
No 62
>PRK11071 esterase YqiA; Provisional
Probab=98.51 E-value=8.1e-07 Score=47.68 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
.+|+++++|.+|++++.+.+..+.+.. ....++|++|-+ .+.+...+.+.+|+.
T Consensus 136 ~~~v~iihg~~De~V~~~~a~~~~~~~---~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 136 PDLIWLLQQTGDEVLDYRQAVAYYAAC---RQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred hhhEEEEEeCCCCcCCHHHHHHHHHhc---ceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 467899999999999999988888744 566789999987 444788888888874
No 63
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.49 E-value=7e-07 Score=55.21 Aligned_cols=63 Identities=27% Similarity=0.326 Sum_probs=51.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCc-cChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHV-EKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~~~~~ 63 (73)
+++|+|+|+|..|..++.+.+..+.+.+. ++++.+||+.+|.+.. ++...+...+..|+.+..
T Consensus 550 i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 550 IKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred cCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 57999999999999999887777766553 4789999999999876 556667777888887653
No 64
>PRK11460 putative hydrolase; Provisional
Probab=98.47 E-value=7e-07 Score=49.19 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=44.5
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCccChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 59 (73)
+.|+++++|++|.+++.+..+.+.+.+. ++++..++++||.+..+.-+.+.+-+..++
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999888777766553 467888899999987655555555555554
No 65
>PRK10566 esterase; Provisional
Probab=98.46 E-value=1.3e-06 Score=47.99 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=44.1
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCC------CcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELP------NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
++|+|+++|++|..++....+.+.+.++ ++++..++++||.+. + .....+.+||+.
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~ 247 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQ 247 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---H-HHHHHHHHHHHh
Confidence 5899999999999999998888877653 256778899999864 3 346677788864
No 66
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.44 E-value=5.8e-07 Score=45.49 Aligned_cols=41 Identities=32% Similarity=0.543 Sum_probs=34.6
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCC-CcEEEEeCCCCcc
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELP-NAIIRQIPDCGHL 42 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~H~ 42 (73)
+.|+++++|++|..++.+..+.+.+.++ +.++..++|++|+
T Consensus 104 ~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 104 RIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp TSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred CCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 5799999999999999988888887776 5899999999996
No 67
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.42 E-value=1.1e-06 Score=50.19 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=51.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCc----cChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHV----EKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~~~~~ 62 (73)
+++|.++++|+.|.++.+...+.+.+.++ +.++-.+||..|-++. ++-+.+...|..|+++.
T Consensus 245 vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 245 VTVPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred ccccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 47899999999999999999999998874 6899999999998874 35556677777887654
No 68
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.41 E-value=2.4e-06 Score=46.91 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=47.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
|++|.|.|.|+.|.+++....+.+++.+++..+..= .+||+++-.. ...+.++.|++..
T Consensus 162 i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~H-pggH~VP~~~--~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 162 LSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEH-PGGHIVPNKA--KYKEKIADFIQSF 220 (230)
T ss_pred CCCCeeEEecccceeecchHHHHHHHhcCCCeEEec-CCCccCCCch--HHHHHHHHHHHHH
Confidence 579999999999999999999999999988865554 4799998655 4556666666553
No 69
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.39 E-value=1.8e-06 Score=46.85 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=38.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEeCCCCccCCccC--------hHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQIPDCGHLPHVEK--------PGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~--------~~~~~~~~~~~~~~ 61 (73)
+++|+++++|++|+.++.+..+.+.+.+ ...++..++|++|.+.... .+.-++.+..||++
T Consensus 144 ~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~ 216 (218)
T PF01738_consen 144 IKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKR 216 (218)
T ss_dssp --S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC
T ss_pred cCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 4789999999999999988666665544 4689999999999876532 22445556666653
No 70
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.32 E-value=1.5e-06 Score=50.21 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=50.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHh-hCCCcEEEEeCCCCccCCcc----ChH-HHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHC-ELPNAIIRQIPDCGHLPHVE----KPG-AVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~H~~~~~----~~~-~~~~~~~~~~~~~ 62 (73)
|++|+++|++.+|++++++....... ..|++.+..-+.|||.-++. ++. +..+.+.+|++..
T Consensus 273 Ir~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 273 IRKPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cccceEEEecCCCCCCChhhCCcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 67999999999999999876665555 66789999999999998876 444 6678888888654
No 71
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.23 E-value=4.1e-06 Score=46.35 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=52.0
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCccChHHHHHHHHHHHhhcCC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCI 64 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 64 (73)
+.|.|++.|..|.++|+..++.+.+..| ..++..||+|.|.-..- -+..++++.+|+.+...
T Consensus 221 ~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i-~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 221 RMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWI-CDGYFQAIEDFLAEVVK 284 (300)
T ss_pred cCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEE-eccHHHHHHHHHHHhcc
Confidence 5799999999999999999999999987 47899999999986543 23568889999987654
No 72
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.23 E-value=4.5e-06 Score=46.03 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=48.3
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
.+||+|-++|..|.++|.+.+.++++.+|+-.+..++|+.|.+...+. .+......|...
T Consensus 198 ~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt~~q~-~l~~lgl~f~k~ 257 (269)
T KOG4667|consen 198 KQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYTGHQS-QLVSLGLEFIKT 257 (269)
T ss_pred ccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCccchhh-hHhhhcceeEEe
Confidence 379999999999999999999999999999999999999998665433 344444454433
No 73
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.17 E-value=6e-06 Score=48.46 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=45.2
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCC--------------------------CcEEEEeCCCCccCCccChHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELP--------------------------NAIIRQIPDCGHLPHVEKPGAVAKLIV 56 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~H~~~~~~~~~~~~~~~ 56 (73)
.++|+..|..|.+++....+.+.+.+. +.++..+.++||+++.++|+...+++.
T Consensus 331 irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~~ 410 (415)
T PF00450_consen 331 IRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMFR 410 (415)
T ss_dssp -EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH
T ss_pred ceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHHH
Confidence 689999999999999888888777532 235678899999999999999999999
Q ss_pred HHHh
Q 037210 57 EFIQ 60 (73)
Q Consensus 57 ~~~~ 60 (73)
.|+.
T Consensus 411 ~fl~ 414 (415)
T PF00450_consen 411 RFLK 414 (415)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9985
No 74
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=98.12 E-value=2.3e-05 Score=44.84 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=49.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC-CcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP-NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
++||++++.|++.+.+. +..+.-.+.-| +..+..+.+||-.+..++|.++.+.+.-|+++..
T Consensus 245 lkc~vllvvGd~Sp~~~-~vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 245 LKCPVLLVVGDNSPHVS-AVVECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGMG 307 (326)
T ss_pred ccccEEEEecCCCchhh-hhhhhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHccCC
Confidence 47999999999987765 23333333334 3678889999999999999999999999998864
No 75
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.10 E-value=1.3e-05 Score=43.61 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+.|+++++|..|+++|.+..+...+.+ .++++..++|+||-+.. .....+.+|+..
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~~----~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEISP----EELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS--H----HHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCH----HHHHHHHHHHhh
Confidence 468999999999999988666665544 35789999999998753 345557777764
No 76
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.09 E-value=1.8e-05 Score=45.06 Aligned_cols=60 Identities=25% Similarity=0.479 Sum_probs=45.1
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC-CC-cEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL-PN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~-~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
.||+|++.|+..+... .+..+.+.+ |. .++..+++||-.+..|+|.++++.+.-|+++..
T Consensus 219 ~c~vLlvvG~~Sp~~~--~vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~G 280 (283)
T PF03096_consen 219 GCPVLLVVGDNSPHVD--DVVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGMG 280 (283)
T ss_dssp CS-EEEEEETTSTTHH--HHHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEecCCcchh--hHHHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHccCC
Confidence 5899999999987764 334455555 43 678999999999999999999999999998753
No 77
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.07 E-value=3.9e-06 Score=45.74 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccCh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEKP 48 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~~ 48 (73)
|++|++.++|.+|.+++++..+.+.+.+.+ .++...+ +||.++....
T Consensus 160 i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP~~~~ 207 (212)
T PF03959_consen 160 ISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVPRKKE 207 (212)
T ss_dssp ---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS----HH
T ss_pred CCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCcCChh
Confidence 578999999999999998888888888866 7777776 6999887543
No 78
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.06 E-value=2.5e-05 Score=47.12 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=46.9
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCC-----------------------------------CcEEEEeCCCCccCCccC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELP-----------------------------------NAIIRQIPDCGHLPHVEK 47 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~H~~~~~~ 47 (73)
.++++..|+.|.+++....+.+.+.+. +..+..+.++||+++.++
T Consensus 365 ikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d~ 444 (462)
T PTZ00472 365 VRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMDQ 444 (462)
T ss_pred ceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhhH
Confidence 689999999999998765555544221 234556678999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 037210 48 PGAVAKLIVEFIQEN 62 (73)
Q Consensus 48 ~~~~~~~~~~~~~~~ 62 (73)
|+...+++..|+...
T Consensus 445 P~~~~~~i~~fl~~~ 459 (462)
T PTZ00472 445 PAVALTMINRFLRNR 459 (462)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999653
No 79
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.05 E-value=1.2e-05 Score=44.41 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCc-cChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHV-EKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~ 59 (73)
.+|-+++++.+|.+++.+..++..+... +++...+.++.|..++ .+|++.++++.+|+
T Consensus 178 ~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 178 RCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 5789999999999999886666655432 3778889999999986 59999999998875
No 80
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.97 E-value=2.2e-05 Score=41.67 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=36.5
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEK 47 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~ 47 (73)
..|.+++.+++|+++|.+.++.+++.+ +.++..++++|||-..+.
T Consensus 114 ~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 114 PFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNAASG 158 (171)
T ss_dssp HCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSGGGT
T ss_pred CCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCcccccC
Confidence 357899999999999999999999888 788999999999976554
No 81
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.96 E-value=5e-05 Score=44.73 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+++|.++|.|.+|++..++....+.+.+|+ ..++.+|+++|..-. ..+.+.+..|+....
T Consensus 261 L~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~~~ 321 (367)
T PF10142_consen 261 LTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNRIQ 321 (367)
T ss_pred cCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHHHH
Confidence 468999999999999999998998888875 779999999999766 567777888877643
No 82
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.95 E-value=3.5e-05 Score=45.89 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred CC-ccEEEEEcCCCcccCHHHHHHHHhhC---C--CcEEEEeCCCCccCCcc---ChHHHHHHHHHHHhh
Q 037210 1 VK-QKTLIIWGEDDQIISSKLAVRLHCEL---P--NAIIRQIPDCGHLPHVE---KPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~-~p~l~i~g~~d~~~~~~~~~~~~~~~---~--~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~~~~ 61 (73)
|+ +|++.+.|++|.++++.......+.+ + +.+....+++||+-.+. -.++++..+.+|+..
T Consensus 336 I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 336 ITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred CcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 56 99999999999999999888888764 4 35566777899997764 455778889999865
No 83
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.94 E-value=2.8e-05 Score=42.51 Aligned_cols=43 Identities=42% Similarity=0.577 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCcccCHH-HHHHHHhhC-----C-CcEEEEeCCCCccC
Q 037210 1 VKQKTLIIWGEDDQIISSK-LAVRLHCEL-----P-NAIIRQIPDCGHLP 43 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~-~~~~~~~~~-----~-~~~~~~~~~~~H~~ 43 (73)
+++|+|++.|++|..-|.. .++.+.+.+ + +.+...++++||++
T Consensus 114 i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 114 IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S--
T ss_pred cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCcee
Confidence 5789999999999998754 444444422 3 36788899999985
No 84
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.94 E-value=5.6e-05 Score=41.00 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=46.1
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
.+|++++.|+.|++++....-.+.+. ....+..++++.||++. .-..+.+.+..|+.
T Consensus 149 P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~g-Kl~~l~~~i~~~l~ 205 (210)
T COG2945 149 PSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFHG-KLIELRDTIADFLE 205 (210)
T ss_pred CCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceecc-cHHHHHHHHHHHhh
Confidence 47899999999999998888888877 45667788999999776 44467788888875
No 85
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.91 E-value=8.7e-05 Score=41.11 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-----cEEEEeCCCCccCCc-----cCh------HHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-----AIIRQIPDCGHLPHV-----EKP------GAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~~~-----~~~------~~~~~~~~~~~~~ 61 (73)
+++|++++.|+.|.++|+....++.+.+.+ .++.+|+|.+|.+.. ..| ++....+..|+.+
T Consensus 163 vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~ 239 (242)
T KOG3043|consen 163 VKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKH 239 (242)
T ss_pred CCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988888777642 358899999997763 223 3445556666654
No 86
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=97.89 E-value=0.00013 Score=42.21 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=46.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCC------------------------C-cEEEEeCCCCccCCccChHHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELP------------------------N-AIIRQIPDCGHLPHVEKPGAVAKLIVE 57 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~H~~~~~~~~~~~~~~~~ 57 (73)
.++|+..|+.|..++....+.|.+.+. + .++..+.++||+++ .+|+...+++..
T Consensus 234 i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~~ 312 (319)
T PLN02213 234 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQR 312 (319)
T ss_pred ceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHHH
Confidence 689999999999998876666655432 2 45666778999997 599999999999
Q ss_pred HHhh
Q 037210 58 FIQE 61 (73)
Q Consensus 58 ~~~~ 61 (73)
|+..
T Consensus 313 fi~~ 316 (319)
T PLN02213 313 WISG 316 (319)
T ss_pred HHcC
Confidence 9965
No 87
>PLN02209 serine carboxypeptidase
Probab=97.83 E-value=0.00018 Score=43.30 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=47.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCC------------------------C-cEEEEeCCCCccCCccChHHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELP------------------------N-AIIRQIPDCGHLPHVEKPGAVAKLIVE 57 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~H~~~~~~~~~~~~~~~~ 57 (73)
.++++..|+.|..++....+.|.+.+. + .++..+.++||+++ .+|+...+++..
T Consensus 352 irVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~~ 430 (437)
T PLN02209 352 YRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQR 430 (437)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHHH
Confidence 589999999999999877777766432 2 45667788999996 599999999999
Q ss_pred HHhh
Q 037210 58 FIQE 61 (73)
Q Consensus 58 ~~~~ 61 (73)
|+..
T Consensus 431 fi~~ 434 (437)
T PLN02209 431 WISG 434 (437)
T ss_pred HHcC
Confidence 9965
No 88
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.79 E-value=0.00018 Score=41.70 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC-CcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP-NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
|+||+++-+|-.|..+|+...-.....++ .+++.+++..||....+ .-.+....|+.+
T Consensus 261 i~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~~~---~~~~~~~~~l~~ 319 (320)
T PF05448_consen 261 IKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVYPEYGHEYGPE---FQEDKQLNFLKE 319 (320)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEETT--SSTTHH---HHHHHHHHHHHH
T ss_pred cCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEeccCcCCCchhh---HHHHHHHHHHhc
Confidence 68999999999999999998888888775 58899999999974332 115556666654
No 89
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.77 E-value=0.00021 Score=39.69 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=47.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCC--cEEEEeCCCCccCCccChH---HHHHHHHHHHhhc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPN--AIIRQIPDCGHLPHVEKPG---AVAKLIVEFIQEN 62 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~H~~~~~~~~---~~~~~~~~~~~~~ 62 (73)
+|+++++|..|..+|......+.+.... .....+++++|........ .....+..|+.+.
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 6999999999999998888887777654 5777788999998764333 5677777887653
No 90
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=97.77 E-value=0.00029 Score=42.41 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCC------------------------C-cEEEEeCCCCccCCccChHHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELP------------------------N-AIIRQIPDCGHLPHVEKPGAVAKLIVE 57 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~H~~~~~~~~~~~~~~~~ 57 (73)
.++|+..|+.|.+++....+.|.+.+. + .++..+.++||+++ .+|+...+++..
T Consensus 348 irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~~ 426 (433)
T PLN03016 348 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQR 426 (433)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHHH
Confidence 589999999999999877777765432 2 45667788999996 599999999999
Q ss_pred HHhhc
Q 037210 58 FIQEN 62 (73)
Q Consensus 58 ~~~~~ 62 (73)
|+...
T Consensus 427 Fi~~~ 431 (433)
T PLN03016 427 WISGQ 431 (433)
T ss_pred HHcCC
Confidence 99653
No 91
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=97.76 E-value=0.00017 Score=43.60 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCC-------------------------CcEEEEeCCCCccCCccChHHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELP-------------------------NAIIRQIPDCGHLPHVEKPGAVAKLIVE 57 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 57 (73)
.++++..|+.|..++.-..+.+.+.+. +..+..+.|+||+++.++|+....++..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 589999999999999766666533221 1234677899999999999999999999
Q ss_pred HHhhcC
Q 037210 58 FIQENC 63 (73)
Q Consensus 58 ~~~~~~ 63 (73)
|+....
T Consensus 444 fl~g~~ 449 (454)
T KOG1282|consen 444 FLNGQP 449 (454)
T ss_pred HHcCCC
Confidence 998753
No 92
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.73 E-value=0.00014 Score=42.55 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=47.0
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCC-ccChHHHHHHHHHHHh
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPH-VEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~~~~ 60 (73)
-+.++.+++|.++|......+.+..|+++++.++| ||..- +-+.+.+.++|.+-++
T Consensus 291 ~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 291 AIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cEEEEEecCceEechhhcchHHHhCCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 36788999999999988889999999999999975 99864 5577788888877654
No 93
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00038 Score=41.01 Aligned_cols=61 Identities=28% Similarity=0.371 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcE-EEEe-CCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAI-IRQI-PDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
|+.|++++.-+.|.+.|++..+++.+.++... ++.+ ...||--++...+.+...|..|+..
T Consensus 305 i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 305 IKAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred CccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 57899999999999999999999999997654 5444 3479999998888899999999864
No 94
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=97.47 E-value=0.00038 Score=41.56 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=45.3
Q ss_pred CCccEEEEEcCCCcccCHH-HHHHHHhhCCCcEEEEeCCCCccCCccC----hHHHHHH-HHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSK-LAVRLHCELPNAIIRQIPDCGHLPHVEK----PGAVAKL-IVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~-~~~~~~~ 61 (73)
|++|+++|.+.+|+++|.. .-.......|++-++.-..|||.-++|. +..+.+. +.+|+..
T Consensus 321 I~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 321 IKVPLLCINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred ccccEEEEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 6799999999999999974 3344455667888888888999988775 3444454 6677654
No 95
>COG0400 Predicted esterase [General function prediction only]
Probab=97.46 E-value=0.00056 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
..|+++++|..|+++|.....++.+.+ .+++...++ +||-+..+. .+.+..|+..
T Consensus 146 ~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~----~~~~~~wl~~ 204 (207)
T COG0400 146 GTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPPEE----LEAARSWLAN 204 (207)
T ss_pred CCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCHHH----HHHHHHHHHh
Confidence 469999999999999987766666654 357888887 799877654 3445556654
No 96
>PLN02442 S-formylglutathione hydrolase
Probab=97.46 E-value=0.0007 Score=38.47 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCcccCHH-----HHHHHHhhCCCcEEEEeCCCCccCC
Q 037210 2 KQKTLIIWGEDDQIISSK-----LAVRLHCELPNAIIRQIPDCGHLPH 44 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~H~~~ 44 (73)
++|+++++|+.|.+++.. ..+.+.+.-.++++..+++.+|..+
T Consensus 217 ~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 217 SATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred CCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 579999999999988742 2333333334578999999999855
No 97
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.43 E-value=0.002 Score=35.93 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=46.3
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCccC-----------hHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHVEK-----------PGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~-----------~~~~~~~~~~~~~~~ 62 (73)
+++|++++.|+.|..++....+.+.+.+. ..++.+++++.|-++-.. .+.-++.+..|+...
T Consensus 157 ~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~ 233 (236)
T COG0412 157 IKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRL 233 (236)
T ss_pred ccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999887777666542 467889999889877332 234567777777654
No 98
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.31 E-value=0.00018 Score=41.31 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
.+|-++|-++.|..-..-.. -+.-...++.+++.+||+.+.+.|.+++..+..|+..+.
T Consensus 270 p~~klLilAg~d~LDkdLti---GQMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~ 328 (343)
T KOG2564|consen 270 PVPKLLILAGVDRLDKDLTI---GQMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNR 328 (343)
T ss_pred CccceeEEecccccCcceee---eeeccceeeeeecccCceeccCCcchHHHHHHHHHhhhc
Confidence 46777777776654431111 112234688999999999999999999999999998765
No 99
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.26 E-value=0.0014 Score=36.89 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=46.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCc--EEEEeCC----CCccCCccCh-HHHHHHHHHHH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNA--IIRQIPD----CGHLPHVEKP-GAVAKLIVEFI 59 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~--~~~~~~~----~~H~~~~~~~-~~~~~~~~~~~ 59 (73)
+++|++++...+|+.+|+...+.+.+..++. +...++. -||+-.+.++ |.+++.+..|+
T Consensus 215 VrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 215 VRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 4789999999999999999999998887664 3333333 5899887776 88888887775
No 100
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.17 E-value=0.0013 Score=39.64 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=38.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEK 47 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~ 47 (73)
|+||++.+.++.|.+.|........+.+++ ++++.. ++||.....+
T Consensus 329 It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~-~sGHIa~vVN 375 (445)
T COG3243 329 ITCPVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLS-RSGHIAGVVN 375 (445)
T ss_pred cccceEEEeecccccCCHHHHHHHHHhcCCceEEEEe-cCceEEEEeC
Confidence 689999999999999999988888888887 666665 5899866544
No 101
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.13 E-value=0.0042 Score=40.00 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCc-cChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHV-EKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~~~~ 62 (73)
|++|+++++|-.|..++......+++.+. +.+++..+ ++|.... ..+..+.+.+..|++..
T Consensus 454 IkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~ 519 (767)
T PRK05371 454 IKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHK 519 (767)
T ss_pred CCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhc
Confidence 57999999999999998766555555442 35665554 5886543 35566777788888665
No 102
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.12 E-value=0.00026 Score=40.82 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=8.7
Q ss_pred CCccEEEEEcCCCcccCHHH-----HHHHHhhCCC----cEEEEeCCCCccCCccCh----HHHHHHHHHHHh
Q 037210 1 VKQKTLIIWGEDDQIISSKL-----AVRLHCELPN----AIIRQIPDCGHLPHVEKP----GAVAKLIVEFIQ 60 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~H~~~~~~~----~~~~~~~~~~~~ 60 (73)
|.+|+|++.+++|+++|... .+.|.+..+. ..--+++|+.|.+--+.. +++.+.+..|++
T Consensus 231 v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 231 VSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp --S-EEEEEE--TT-----------------------------------------------------------
T ss_pred CCCceEEEecCCCceecccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46799999999999998642 2222222221 123478999999764332 357777777763
No 103
>PRK10162 acetyl esterase; Provisional
Probab=97.08 E-value=0.0063 Score=35.18 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=40.8
Q ss_pred ccEEEEEcCCCcccCHH--HHHHHHhhCCCcEEEEeCCCCccCCc-----cChHHHHHHHHHHHhhc
Q 037210 3 QKTLIIWGEDDQIISSK--LAVRLHCELPNAIIRQIPDCGHLPHV-----EKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~H~~~~-----~~~~~~~~~~~~~~~~~ 62 (73)
.|+++++|+.|.+.+.. ..+.+.+.--.+++..++|..|.+.. +......+.+..|+.+.
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~ 315 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQ 315 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHH
Confidence 48999999999987632 33444433345889999999997643 23445666677777653
No 104
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.02 E-value=0.0033 Score=39.15 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=34.0
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC-CcEEEEeCCCCcc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP-NAIIRQIPDCGHL 42 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~H~ 42 (73)
|+||++++.|..|.++|++.+....+.+. +.++... .+||.
T Consensus 440 I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs~~~fvl~-~gGHI 481 (560)
T TIGR01839 440 VKCDSFSVAGTNDHITPWDAVYRSALLLGGKRRFVLS-NSGHI 481 (560)
T ss_pred CCCCeEEEecCcCCcCCHHHHHHHHHHcCCCeEEEec-CCCcc
Confidence 68999999999999999999988888875 4666655 46884
No 105
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=96.91 E-value=0.0081 Score=33.96 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=30.7
Q ss_pred CccEEEEEcCCCcccCH-HH----HHHHHhhCCCcEEEEeCCCCccCCc
Q 037210 2 KQKTLIIWGEDDQIISS-KL----AVRLHCELPNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~-~~----~~~~~~~~~~~~~~~~~~~~H~~~~ 45 (73)
..|+++.+|+.|..++. .. .+.+.+.-..+++..++|.+|.+..
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~ 259 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYF 259 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchh
Confidence 35788889999998886 22 2333333234788899999998765
No 106
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0083 Score=34.21 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCC--cEEEEeCCCCccCCccChHHHHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPN--AIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 59 (73)
+-+.+.+|.+|.++|.+..+.+.+.+|. .++.. +++.|.+.....+..+.++...+
T Consensus 243 d~l~Fyygt~DgW~p~~~~d~~kdd~~eed~~Lde-dki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 243 DSLWFYYGTNDGWVPSHYYDYYKDDVPEEDLKLDE-DKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred cEEEEEccCCCCCcchHHHHHHhhhcchhceeecc-ccCCcceeecccHHHHHHHHHhh
Confidence 4578899999999999999999999986 45555 78999998888888888777654
No 107
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.73 E-value=0.015 Score=31.31 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=42.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCC----------ccChHHHHHHHHHHHhhc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPH----------VEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~----------~~~~~~~~~~~~~~~~~~ 62 (73)
|++|++++.|..|.+-..+.+.. +...+..++..+.++.|-+- .++-...++.+..|.+..
T Consensus 141 l~tPtli~qGtrD~fGtr~~Va~-y~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~l 211 (213)
T COG3571 141 LKTPTLITQGTRDEFGTRDEVAG-YALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARRL 211 (213)
T ss_pred CCCCeEEeecccccccCHHHHHh-hhcCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhhc
Confidence 57899999999999987665522 22445688899999999532 234445667777776653
No 108
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=96.71 E-value=0.0035 Score=33.69 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=40.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCcc---ChHHHHHHHHHHHhh
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVE---KPGAVAKLIVEFIQE 61 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~~~~ 61 (73)
-|.+++.+++|++++.+.++.+.+.+. ..++....+||+--.+ .=.+....+.+|+..
T Consensus 118 fps~vvaSrnDp~~~~~~a~~~a~~wg-s~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 118 FPSVVVASRNDPYVSYEHAEDLANAWG-SALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred CceeEEEecCCCCCCHHHHHHHHHhcc-HhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 378999999999999999999998884 4556667788974332 212334445555543
No 109
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.69 E-value=0.0062 Score=38.51 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=38.1
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCCCCccCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPDCGHLPH 44 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~H~~~ 44 (73)
++.|+||+.|.+|..+++...+.+.+.+ ...+++++.+++|-+-
T Consensus 303 mk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsma 347 (784)
T KOG3253|consen 303 MKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMA 347 (784)
T ss_pred cCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCcccc
Confidence 3679999999999999999999998877 4578999999999653
No 110
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=96.64 E-value=0.008 Score=34.22 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=32.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCccChH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVEKPG 49 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~ 49 (73)
+.+|.+.+++++|.++......++.+... .++++.++|++|-+.. ++-
T Consensus 194 l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~e-nl~ 243 (294)
T PF02273_consen 194 LSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLGE-NLV 243 (294)
T ss_dssp --S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TTS-SHH
T ss_pred CCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccchhhh-ChH
Confidence 46899999999999999888888887653 4789999999998543 443
No 111
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=96.63 E-value=0.0094 Score=32.61 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=41.8
Q ss_pred CccEEEEEcCCCcccCHHHHHH---HHhhCCC--cEEEEeCCCCccCCccChH---HHHHHHHHHHhh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVR---LHCELPN--AIIRQIPDCGHLPHVEKPG---AVAKLIVEFIQE 61 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~---~~~~~~~--~~~~~~~~~~H~~~~~~~~---~~~~~~~~~~~~ 61 (73)
+++.+-|-|+.|+++....... +...+|. ..-...+|+||+-.+.-+. .+...+.+|+..
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 3567779999999998765444 4444553 3456778999998776443 567777787764
No 112
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=96.62 E-value=0.025 Score=30.65 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=35.4
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 59 (73)
..+++++.+.+|.+.+...+ .+...+....+.+|++|-+. +-+.....+..|+
T Consensus 134 ~~~~lvll~~~DEvLd~~~a---~~~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 134 PERYLVLLQTGDEVLDYREA---VAKYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAFL 186 (187)
T ss_pred CccEEEEEecCCcccCHHHH---HHHhcCceEEEEeCCCCCCc--cHHHHHHHHHHhh
Confidence 35899999999999987443 33334444455678888754 3445566677775
No 113
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=96.49 E-value=0.0048 Score=33.16 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCcccCHH--HHHHHHhhCCCcEEEEeCCCCccCC
Q 037210 3 QKTLIIWGEDDQIISSK--LAVRLHCELPNAIIRQIPDCGHLPH 44 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~H~~~ 44 (73)
.|+++++|+.|.+.+.. ..+.+.+.-.++++..++|..|.+.
T Consensus 167 Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred CCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 38999999999877432 3444444334578999999999764
No 114
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=96.36 E-value=0.026 Score=30.70 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=41.3
Q ss_pred ccEEEEEcCCCcccCHH---HHHHHHhhCCC-cEEEEeCCCCccCCcc-ChHHHHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSK---LAVRLHCELPN-AIIRQIPDCGHLPHVE-KPGAVAKLIVEFI 59 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~---~~~~~~~~~~~-~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~ 59 (73)
+|..++....|...... ....|.+...+ .++..++ |+|+.++. +...+++.|.+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~-G~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 169 VPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVP-GDHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEES-SETTGHHSTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEc-CCCcEecchHHHHHHHHHhccC
Confidence 46778888888887766 34447777764 6788887 59999887 7778888777664
No 115
>PRK10115 protease 2; Provisional
Probab=96.33 E-value=0.026 Score=36.10 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred Ccc-EEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEe---CCCCccCCc
Q 037210 2 KQK-TLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQI---PDCGHLPHV 45 (73)
Q Consensus 2 ~~p-~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~---~~~~H~~~~ 45 (73)
+.| +|+++|.+|..++.....++...+ .+.++..+ +++||....
T Consensus 605 ~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~ 656 (686)
T PRK10115 605 AYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKS 656 (686)
T ss_pred CCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCc
Confidence 468 556699999999987767666554 23556666 899999443
No 116
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.019 Score=33.20 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=47.2
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCC-ccChHHHHHHHHHHHhhcC
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPH-VEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~~~~~~~ 63 (73)
+.++.+..|..++......+.+..|+++++.+. +||..- +-.-+.+..+|.+-++...
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLD 367 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhh
Confidence 567788999999999999999999999999998 699864 4466677888887776653
No 117
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.13 E-value=0.026 Score=33.28 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=39.7
Q ss_pred cEEEEEcCCCcccCHH--HHHHHHhhCCCcEEEEeCCCCccCCccCh-----HHHHHHHHHHHhh
Q 037210 4 KTLIIWGEDDQIISSK--LAVRLHCELPNAIIRQIPDCGHLPHVEKP-----GAVAKLIVEFIQE 61 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~H~~~~~~~-----~~~~~~~~~~~~~ 61 (73)
|++++.++.|.+.... +++.+.+.--++++..++++.|.++.-.+ ..+.+.+..|+..
T Consensus 270 ~tlv~~ag~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 270 PTLVVVAGYDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred ceEEEEeCchhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 5999999999887533 45555443335667789999998765433 4666777777754
No 118
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=96.08 E-value=0.034 Score=32.20 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=39.9
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCC---------------------------cEEEEeCCCCccCCccChHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPN---------------------------AIIRQIPDCGHLPHVEKPGAVAKL 54 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~H~~~~~~~~~~~~~ 54 (73)
.+|+++++|.+|.++..+...+....+.+ ..-+.|.+.|||.+-.+++.+++.
T Consensus 212 ~ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~A~lIA~~ 291 (297)
T PF06342_consen 212 PIKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFRADLIAEA 291 (297)
T ss_pred CCcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHHHHHHHHH
Confidence 36899999999998877666665443321 123455667888887788887777
Q ss_pred HHHHH
Q 037210 55 IVEFI 59 (73)
Q Consensus 55 ~~~~~ 59 (73)
+...+
T Consensus 292 i~~mf 296 (297)
T PF06342_consen 292 IKKMF 296 (297)
T ss_pred HHHhh
Confidence 76654
No 119
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=96.02 E-value=0.091 Score=30.28 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=34.4
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC-----CCcEEEEeCCCCccCCc
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL-----PNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~H~~~~ 45 (73)
+.|+++.+|..|.++|....+.+.+.+ .++++..+++++|....
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~ 267 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAA 267 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhh
Confidence 579999999999999987666655443 25778888899998653
No 120
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=95.66 E-value=0.079 Score=32.17 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC-ccCCccChHHHHHHHHHHHhh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG-HLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-H~~~~~~~~~~~~~~~~~~~~ 61 (73)
.+|+|.+.+++|.++|.+..+.+...-.+.+...|+... |. .-+.-...+..|+.+
T Consensus 352 ~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~~~~~~~~----gy~~al~~~~~Wl~~ 408 (411)
T PF06500_consen 352 PTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRIPSKPLHM----GYPQALDEIYKWLED 408 (411)
T ss_dssp SS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE-SSSHHH----HHHHHHHHHHHHHHH
T ss_pred CcceEEeecCCCCCCCHHHHHHHHhcCCCCceeecCCCcccc----chHHHHHHHHHHHHH
Confidence 579999999999999999888888777667777776543 33 223445556677654
No 121
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=95.39 E-value=0.16 Score=29.19 Aligned_cols=44 Identities=25% Similarity=0.112 Sum_probs=32.2
Q ss_pred ccEEEEEcCCCcccCH--HHHHHHHhhCCCcEEEEeCCCCccCCcc
Q 037210 3 QKTLIIWGEDDQIISS--KLAVRLHCELPNAIIRQIPDCGHLPHVE 46 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~H~~~~~ 46 (73)
-|+++++|+.|.+.+. ...+.+.+.-..+++..+++..|.+...
T Consensus 246 PP~~i~~a~~D~l~~~~~~~a~~L~~agv~~~~~~~~g~~H~f~~~ 291 (312)
T COG0657 246 PPTLIQTAEFDPLRDEGEAYAERLRAAGVPVELRVYPGMIHGFDLL 291 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHcCCeEEEEEeCCcceecccc
Confidence 4799999999999882 2444455444557899999999966443
No 122
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=95.35 E-value=0.018 Score=34.63 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=43.4
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+..|-.++.|.+|++..++.+..+.+.+|+ .-++++|+..|..-- ..+.+.+..|+..
T Consensus 328 LalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~n---~~i~esl~~flnr 386 (507)
T COG4287 328 LALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLIN---QFIKESLEPFLNR 386 (507)
T ss_pred ccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhhH---HHHHHHHHHHHHH
Confidence 356889999999999999999999999987 568899999997433 2344444445433
No 123
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=95.31 E-value=0.073 Score=29.11 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
.|++.|+|.++.-..... -..++.+...+|| ||++-. +.+.+++.|..-++
T Consensus 140 ~~v~CiyG~~E~d~~cp~-----l~~~~~~~i~lpG-gHHfd~-dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 140 APVQCIYGEDEDDSLCPS-----LRQPGVEVIALPG-GHHFDG-DYDALAKRILDALK 190 (192)
T ss_pred CeEEEEEcCCCCCCcCcc-----ccCCCcEEEEcCC-CcCCCC-CHHHHHHHHHHHHh
Confidence 488999998865432111 1225688889985 888544 46667776666554
No 124
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.24 E-value=0.049 Score=32.91 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=32.4
Q ss_pred HHhhCCC-cEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 24 LHCELPN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 24 ~~~~~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+....++ .+....+++|||..+|.|+.+++-+..|+....
T Consensus 424 lrdky~nL~~~s~~~~GGhFaalE~p~~La~D~~~FV~~~~ 464 (469)
T KOG2565|consen 424 LRDKYPNLTHSSYHPKGGHFAALEDPKKLAQDFFSFVEKLN 464 (469)
T ss_pred HhhhcccceeeEeccCCcchhhhhCcHHHHHHHHHHHHHHH
Confidence 3455666 456677889999999999999999999997754
No 125
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.00 E-value=0.17 Score=29.49 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=40.6
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC-cEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN-AIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+++|+|+..|--|+++|+...-.+.+..+. .++.+++.-+|.-. |.--.+.+..|+..
T Consensus 258 iK~pvL~svgL~D~vcpPstqFA~yN~l~~~K~i~iy~~~aHe~~---p~~~~~~~~~~l~~ 316 (321)
T COG3458 258 IKVPVLMSVGLMDPVCPPSTQFAAYNALTTSKTIEIYPYFAHEGG---PGFQSRQQVHFLKI 316 (321)
T ss_pred hccceEEeecccCCCCCChhhHHHhhcccCCceEEEeeccccccC---cchhHHHHHHHHHh
Confidence 578999999999999999988787777754 56666666567633 33333444455543
No 126
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.92 E-value=0.19 Score=31.63 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=33.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHh-hCC-------Cc---EEEEeCCCCccCCccChHHHH
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHC-ELP-------NA---IIRQIPDCGHLPHVEKPGAVA 52 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~-~~~-------~~---~~~~~~~~~H~~~~~~~~~~~ 52 (73)
|+||+++++|.+|.++|+..+-.|.. ..+ .. -+.+-+..||.-.+....-..
T Consensus 296 Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGIFVS~~Var 358 (581)
T PF11339_consen 296 IRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGIFVSGKVAR 358 (581)
T ss_pred CCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceEEEeccHhhH
Confidence 68999999999999999886644332 222 11 223446789987665444333
No 127
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=94.73 E-value=0.081 Score=29.38 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=28.1
Q ss_pred EEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCc
Q 037210 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 6 l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 45 (73)
..+.|++|.+.|+...+...+.. +.+..++ ++|+++.
T Consensus 169 ~aiIg~~D~IFpp~nQ~~~W~~~--~~~~~~~-~~Hy~F~ 205 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQKRAWQGR--CTIVEID-APHYPFF 205 (213)
T ss_pred EEEEcCCCEEeCHHHHHHHHhCc--CcEEEec-CCCcCch
Confidence 37899999999999887776643 3455664 7999875
No 128
>PLN00021 chlorophyllase
Probab=94.15 E-value=0.15 Score=29.78 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCccEEEEEcCCCc-----cc----CHH-HHHHHHhhC-CCcEEEEeCCCCccCCccCh
Q 037210 1 VKQKTLIIWGEDDQ-----II----SSK-LAVRLHCEL-PNAIIRQIPDCGHLPHVEKP 48 (73)
Q Consensus 1 i~~p~l~i~g~~d~-----~~----~~~-~~~~~~~~~-~~~~~~~~~~~~H~~~~~~~ 48 (73)
+.+|++++.++.|. .+ |.. ...++++.+ +.....+.+++||+-+.++.
T Consensus 188 ~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 188 LDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred CCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCeeeeeecCCCcceeecCC
Confidence 35899999888653 11 222 224444444 56778888999999886654
No 129
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.37 Score=31.55 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCccCh-HHHHHHHHHHHhh
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHVEKP-GAVAKLIVEFIQE 61 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~-~~~~~~~~~~~~~ 61 (73)
.|+|+|..|.-+..+....+.+.+. ..++.++|+..|.+..-.. ..+...+..|+..
T Consensus 685 ~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~ 746 (755)
T KOG2100|consen 685 LLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRD 746 (755)
T ss_pred EEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHH
Confidence 4999999999997665555554431 3788999999999876543 4667778888873
No 130
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=94.12 E-value=0.24 Score=28.24 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=30.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCC----cEEEEeCCCCccC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPN----AIIRQIPDCGHLP 43 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~H~~ 43 (73)
.++.+++|.+|.++|.+..+++.+.+++ +.+.. +|..|-+
T Consensus 222 ~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 222 DKLWFYFGQNDHWVPNETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 4788999999999999999999999883 23333 5566643
No 131
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=93.99 E-value=0.51 Score=28.76 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=46.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEE---EEeCCCCccCC---ccChHHHHHHHHHHHhhcC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAII---RQIPDCGHLPH---VEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~H~~~---~~~~~~~~~~~~~~~~~~~ 63 (73)
+++|+.+.+|++|.+..++.++.+....++... ..+++=.|+-+ .+-++.+.+.+.+.++...
T Consensus 331 i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 331 IKVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 468999999999999999988877777766433 22566566544 2568888888888877543
No 132
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=93.67 E-value=0.25 Score=27.40 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=37.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhh----CCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCE----LPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
.|.+..+|+.|+++|....+.-.+. ...+++..++|-+|...-+.-+ .+..|+..
T Consensus 145 ~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~~e~~----~~~~~~~~ 203 (206)
T KOG2112|consen 145 TPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSPQELD----DLKSWIKT 203 (206)
T ss_pred chhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccHHHHH----HHHHHHHH
Confidence 4788999999999997755444333 2347888999999986554433 34455543
No 133
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=93.05 E-value=0.15 Score=31.16 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=34.7
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCc-----cChHHHHHHHHHHH
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHV-----EKPGAVAKLIVEFI 59 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-----~~~~~~~~~~~~~~ 59 (73)
.+++|+|++|++..... .+.+...+..+.+.||++|..-+ ++.+.....|..|.
T Consensus 353 rmlFVYG~nDPW~A~~f--~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~Wa 411 (448)
T PF05576_consen 353 RMLFVYGENDPWSAEPF--RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWA 411 (448)
T ss_pred eEEEEeCCCCCcccCcc--ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHc
Confidence 58999999999875221 11223345677888999997543 34445555666664
No 134
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=92.93 E-value=0.07 Score=31.88 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=38.4
Q ss_pred CCccEEEEEcCCCcccCHH-HHHHHHhhCCCc--EEEEeCCCCccCCccChHHH
Q 037210 1 VKQKTLIIWGEDDQIISSK-LAVRLHCELPNA--IIRQIPDCGHLPHVEKPGAV 51 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~-~~~~~~~~~~~~--~~~~~~~~~H~~~~~~~~~~ 51 (73)
++.|++++.|+.|.+.|.. .......+++.. .+..++++.|+.+.+-.++.
T Consensus 250 v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 250 VTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred eecceeeecccccccCCcccccccccccCCcchhheeecCCCccccccccCccc
Confidence 4689999999999987654 344456667665 57888999999988765553
No 135
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=92.41 E-value=0.93 Score=28.17 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=43.4
Q ss_pred ccEEEEEcCCCcccCHH----HHHHHHhhCCC--------cEEEEeCCCCccCCcc--ChHHHHHHHHHHHhhcC
Q 037210 3 QKTLIIWGEDDQIISSK----LAVRLHCELPN--------AIIRQIPDCGHLPHVE--KPGAVAKLIVEFIQENC 63 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~H~~~~~--~~~~~~~~~~~~~~~~~ 63 (73)
.++++.+|..|..+++. +.+.+.+.... .++..+||.+|..--. .+-.....|..|+.+..
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~ 428 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGK 428 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCC
Confidence 46788999999998875 44444444431 4688999999986433 44467888889998754
No 136
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=91.37 E-value=0.21 Score=28.07 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=33.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCcc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVE 46 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~ 46 (73)
++.+++++.|+.+.---.+..+.+.+...+..+..|++.+|+-.++
T Consensus 206 v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy~I~~ 251 (270)
T KOG4627|consen 206 VTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHYDIIE 251 (270)
T ss_pred ceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchhhHHH
Confidence 4678999999987544445555566666678889999999986554
No 137
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=91.11 E-value=0.18 Score=26.56 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=34.2
Q ss_pred CccEEEEEcCCCccc-CHHHHHHHHhhC-CCcEEEEeCCCCccCCc-cChHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQII-SSKLAVRLHCEL-PNAIIRQIPDCGHLPHV-EKPGAVAKLIVEF 58 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~-~~~~~~~~~~~~-~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~ 58 (73)
.+|+.++.+..|... +......|.+.. ...+...++ ++|+.+. +++..+...+..|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-g~H~~~~~~~~~~~~~~~~~~ 211 (212)
T smart00824 153 AAPTLLVRASEPLAEWPDEDPDGWRAHWPLPHTVVDVP-GDHFTMMEEHAAATARAVHDW 211 (212)
T ss_pred CCCEEEEeccCCCCCCCCCCcccccCCCCCCceeEEcc-CchHHHHHHhHHHHHHHHHhh
Confidence 578889988888654 222223344443 346778887 5898764 4555666555443
No 138
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=90.60 E-value=0.32 Score=26.43 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=19.0
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhC
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCEL 28 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~ 28 (73)
|+++++|.+|.+++....+.+.+.+
T Consensus 170 ~~~i~hG~~D~vVp~~~~~~~~~~l 194 (212)
T TIGR01840 170 IMSVVHGDADYTVLPGNADEIRDAM 194 (212)
T ss_pred eEEEEEcCCCceeCcchHHHHHHHH
Confidence 3568899999999887776666554
No 139
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=88.73 E-value=1 Score=30.75 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=31.5
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccCh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKP 48 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~ 48 (73)
.+|++++.+..|..........|.+...+.....++ ++|+.+...+
T Consensus 1236 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~v~-g~H~~~~~~~ 1281 (1296)
T PRK10252 1236 DGKATLFVAERTLQEGMSPEQAWSPWIAELDVYRQD-CAHVDIISPE 1281 (1296)
T ss_pred cCceEEEEcCCCCcccCCcccchhhhcCCCEEEECC-CCHHHHCCcH
Confidence 468888888888655544445565555667777785 6999877443
No 140
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=88.54 E-value=1 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=23.9
Q ss_pred EEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 33 IRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 33 ~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+..+ .+|||+++++|+...+.+..|+...
T Consensus 463 ~r~y-~aGHMvp~d~P~~~~~~~~~~~~~~ 491 (498)
T COG2939 463 LRIY-EAGHMVPYDRPESSLEMVNLWINGY 491 (498)
T ss_pred EEEe-cCcceeecCChHHHHHHHHHHHhhc
Confidence 4455 5899999999999999998887663
No 141
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=88.46 E-value=2.8 Score=23.79 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCCc----EEEEeCCCCcc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPNA----IIRQIPDCGHL 42 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~H~ 42 (73)
+++|+|++.|-.|........+.+....... ++++-| .+|.
T Consensus 227 i~vP~l~v~Gw~D~~~~~~~~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 227 IDVPVLIVGGWYDTLFLRGALRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp --SEEEEEEETTCSSTSHHHHHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred CCCCEEEecccCCcccchHHHHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 5799999999999665555444444433333 555544 4664
No 142
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=88.42 E-value=1 Score=26.82 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=43.7
Q ss_pred ccEEEEEcCCCcccCHHH---HHHHHhhCCC--cEEEEeCCCCccCCcc---ChHHHHHHHHHHHhhcCCC
Q 037210 3 QKTLIIWGEDDQIISSKL---AVRLHCELPN--AIIRQIPDCGHLPHVE---KPGAVAKLIVEFIQENCIS 65 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~---~~~~~~~~~~--~~~~~~~~~~H~~~~~---~~~~~~~~~~~~~~~~~~~ 65 (73)
+-.+-+-|++|++..... +..+...+|. .+...-+++||+-.+. -.+.+...++.|+.+....
T Consensus 340 ~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d~~ 410 (415)
T COG4553 340 VALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYDRS 410 (415)
T ss_pred eeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhCcc
Confidence 446778899999887544 4444555553 3456678999997664 4567888999999876543
No 143
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=87.54 E-value=3.4 Score=23.71 Aligned_cols=56 Identities=29% Similarity=0.469 Sum_probs=40.9
Q ss_pred ccEEEEEcC------CCcccCHHHHHHHHhhCCC----cEEEEeCC--CCccCCccChHHHHHHHHHHH
Q 037210 3 QKTLIIWGE------DDQIISSKLAVRLHCELPN----AIIRQIPD--CGHLPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 3 ~p~l~i~g~------~d~~~~~~~~~~~~~~~~~----~~~~~~~~--~~H~~~~~~~~~~~~~~~~~~ 59 (73)
+.+|-|.|+ .|-.+|...+..+...+.+ .+...+.| +.|.-..+++ .+.+.|..||
T Consensus 185 i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FL 252 (255)
T PF06028_consen 185 IQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFL 252 (255)
T ss_dssp -EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHH
T ss_pred eEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHh
Confidence 568889998 7889998888877777643 34455654 5788888887 5667788886
No 144
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.91 E-value=4.9 Score=24.28 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=46.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEeCCCCccCCc-cChHHHHHHHHHHHhhcC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQIPDCGHLPHV-EKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~~~~~ 63 (73)
.+.+.+++.+|.+++.+..+.+.+.. -++.-..+.++-|..++ ..|.........|+....
T Consensus 226 ~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~ 291 (350)
T KOG2521|consen 226 WNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVI 291 (350)
T ss_pred ccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcc
Confidence 46688899999999987766664433 24556677889998875 488899999999997754
No 145
>PRK04940 hypothetical protein; Provisional
Probab=84.63 E-value=4.8 Score=21.99 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=33.9
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCCCc-EEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELPNA-IIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
..+++...+|++.....+.... .+. ...+.+|+.|-+. +-+.....|..|+.
T Consensus 126 r~~vllq~gDEvLDyr~a~~~y---~~~y~~~v~~GGdH~f~--~fe~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTAEEL---HPYYEIVWDEEQTHKFK--NISPHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHHHHHHh---ccCceEEEECCCCCCCC--CHHHHHHHHHHHHh
Confidence 3588999999999865544333 343 5677787777542 33346667778774
No 146
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=84.38 E-value=1.2 Score=24.94 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhh
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCE 27 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~ 27 (73)
.|+++++|+.|..+.+...+++.+.
T Consensus 170 ~P~~v~hG~~D~tV~~~n~~~~~~q 194 (220)
T PF10503_consen 170 YPRIVFHGTADTTVNPQNADQLVAQ 194 (220)
T ss_pred CCEEEEecCCCCccCcchHHHHHHH
Confidence 5889999999998887765555443
No 147
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=80.87 E-value=10 Score=23.71 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=27.6
Q ss_pred cEEEEEcCCCc--ccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 4 KTLIIWGEDDQ--IISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 4 p~l~i~g~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
.+..|+|.++. .||.. ...+.+.+.+|| ||++- ++.+.++..|.+-+.
T Consensus 398 ~v~CiYG~~e~d~~Cp~l-------~~~~~~~v~lpG-gHHFd-~dy~~la~~il~~~~ 447 (456)
T COG3946 398 RVQCIYGQEEKDTACPSL-------KAKGVDTVKLPG-GHHFD-GDYEKLAKAILQGMR 447 (456)
T ss_pred eeEEEecCccccccCCcc-------hhhcceeEecCC-CcccC-ccHHHHHHHHHHHHH
Confidence 46777887644 34411 112456778885 77744 455666666665553
No 148
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=79.23 E-value=6.5 Score=22.76 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=30.3
Q ss_pred CccEEEEEcCCCcc--------cCHH--HHHHHHhhC-CCcEEEEeCCCCccCCccCh
Q 037210 2 KQKTLIIWGEDDQI--------ISSK--LAVRLHCEL-PNAIIRQIPDCGHLPHVEKP 48 (73)
Q Consensus 2 ~~p~l~i~g~~d~~--------~~~~--~~~~~~~~~-~~~~~~~~~~~~H~~~~~~~ 48 (73)
.+|++++..+-+.. +-++ ..++++... +.......++.||+-+++..
T Consensus 154 ~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 154 SMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPSWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCEEEEEeCCCCchHhhcCC
Confidence 48998887666642 2222 344444444 45666677889999888765
No 149
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=77.92 E-value=3.3 Score=25.05 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhh---CCCcEEEEeCCCCccCCc
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCE---LPNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~H~~~~ 45 (73)
++.|+|+|.++.= ........+.+. .++..+.++.|+.|..+-
T Consensus 273 i~~P~L~InSe~f--~~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~s 318 (379)
T PF03403_consen 273 IPQPLLFINSESF--QWWENIFRMKKVISNNKESRMLTIKGTAHLSFS 318 (379)
T ss_dssp --S-EEEEEETTT----HHHHHHHHTT--TTS-EEEEEETT--GGGGS
T ss_pred CCCCEEEEECccc--CChhhHHHHHHHhccCCCcEEEEECCCcCCCcc
Confidence 4679999988753 333333333332 245678899999996443
No 150
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=77.61 E-value=4.8 Score=26.31 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCcccCHH-HHHHHHhh------C-CCcEEEEeCCCCccC
Q 037210 2 KQKTLIIWGEDDQIISSK-LAVRLHCE------L-PNAIIRQIPDCGHLP 43 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~-~~~~~~~~------~-~~~~~~~~~~~~H~~ 43 (73)
..|.++++|..|.++|.. ..+.+..+ . ....++.+.++-||-
T Consensus 555 GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHfD 604 (690)
T PF10605_consen 555 GKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHFD 604 (690)
T ss_pred CCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeech
Confidence 469999999999999864 12222221 1 346788888888864
No 151
>PRK03995 hypothetical protein; Provisional
Probab=74.55 E-value=2.8 Score=24.28 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=22.6
Q ss_pred CCccEEEE-Ec-CCCcccCHHHHHHH----HhhCC-----C-cEEEEeCCCCccCC
Q 037210 1 VKQKTLII-WG-EDDQIISSKLAVRL----HCELP-----N-AIIRQIPDCGHLPH 44 (73)
Q Consensus 1 i~~p~l~i-~g-~~d~~~~~~~~~~~----~~~~~-----~-~~~~~~~~~~H~~~ 44 (73)
+++|++++ .| ..+.+..+...+.+ .+.+. . ..+.-| |+||+.+
T Consensus 140 l~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGi-GGgHYap 194 (267)
T PRK03995 140 LKVPSVFVEIGSTEEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGI-GGGHYAP 194 (267)
T ss_pred CCCCeEEEEeCCCHHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEE-CCCCccH
Confidence 35788887 33 33445554443333 33321 1 245556 7899865
No 152
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=73.09 E-value=4.7 Score=24.56 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=22.5
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCC
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPH 44 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 44 (73)
.+++..|+.|++....... .........+++|++|..=
T Consensus 378 nviFtNG~~DPW~~lgv~~---~~~~~~~~~~I~g~~Hc~D 415 (434)
T PF05577_consen 378 NVIFTNGELDPWRALGVTS---DSSDSVPAIVIPGGAHCSD 415 (434)
T ss_dssp SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTGG
T ss_pred eEEeeCCCCCCcccccCCC---CCCCCcccEEECCCeeecc
Confidence 6889999999997654221 1223455678899999753
No 153
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.28 E-value=3.6 Score=22.46 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred EEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCc
Q 037210 7 IIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 7 ~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 45 (73)
++.|.+|.+.|+.....+... .+.+..+. ++|+.+.
T Consensus 169 a~v~skDkIFpp~nq~ayw~~--rc~v~ei~-g~H~~F~ 204 (214)
T COG2830 169 AYVGSKDKIFPPANQHAYWNA--RCAVIEIN-GEHYLFS 204 (214)
T ss_pred hhccCCCcccCCcchhhhhcc--ceeEEEec-CcceEEe
Confidence 356888999988876665433 35666775 5898653
No 154
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=69.25 E-value=4.8 Score=24.39 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.5
Q ss_pred CcEEEEeCCCCccCCccChHHHHHHHHHH
Q 037210 30 NAIIRQIPDCGHLPHVEKPGAVAKLIVEF 58 (73)
Q Consensus 30 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 58 (73)
+..+..+..+||+.+.++|+....+++.+
T Consensus 382 nl~f~wilraghmvp~Dnp~~a~hmlr~v 410 (414)
T KOG1283|consen 382 NLSFFWILRAGHMVPADNPAAASHMLRHV 410 (414)
T ss_pred cceeEEeecccCcccCCCHHHHhhheeec
Confidence 45566677899999999999877766543
No 155
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=69.22 E-value=9.4 Score=17.05 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=26.2
Q ss_pred hCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 27 ELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 27 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
..|+..+. +-+|.++...|.++++.+.+.+|.+.
T Consensus 24 ~~PDTvIt-L~~G~k~vV~Es~~eVi~ki~~y~~~ 57 (60)
T PF06289_consen 24 ETPDTVIT-LTNGKKYVVKESVEEVIEKIIEYRRK 57 (60)
T ss_pred EcCCeEEE-EeCCCEEEEECCHHHHHHHHHHHHHh
Confidence 45664444 44678888999999999999998765
No 156
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=68.09 E-value=11 Score=17.17 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 18 SKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+...+. .+.+|+..+..+. |.-+...+..+++.+.+.+|.....
T Consensus 16 ~~~IE~-ie~~PDttItLin-GkkyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 16 AHHIET-IEAFPDTTITLIN-GKKYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred HHHhhh-hhccCCcEEEEEc-CcEEEEcccHHHHHHHHHHHHHHhh
Confidence 344444 4578998888875 6889899999999999999987653
No 157
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=66.50 E-value=19 Score=19.57 Aligned_cols=39 Identities=8% Similarity=-0.107 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..++++.++++
T Consensus 72 r~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~y 110 (196)
T cd02013 72 RPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQW 110 (196)
T ss_pred CcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEECchh
Confidence 467777777776655433333333333455555555554
No 158
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=62.98 E-value=22 Score=18.99 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=41.1
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
++++..--|.-.+....+.+.+.+.+..+..|--+|...-.++...+.+.+..++...
T Consensus 42 ~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~ 99 (160)
T PF12641_consen 42 LIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGAGPDSEYAKKILKNVEALLPKG 99 (160)
T ss_pred EEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCCCCchHHHHHHHHHHHHhhccC
Confidence 4566555666666666677777787778888877777766677777777777777654
No 159
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=62.66 E-value=24 Score=19.27 Aligned_cols=40 Identities=8% Similarity=-0.155 Sum_probs=24.9
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCcc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHL 42 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 42 (73)
.|++.+.|++.-........-..+.--++.+.++.++++.
T Consensus 76 ~~vv~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~yg 115 (202)
T cd02006 76 RQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLG 115 (202)
T ss_pred CeEEEEEeChHhhccHHHHHHHHHhCCCeEEEEEeCchHH
Confidence 4688888888877765443334443335666677776554
No 160
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=60.20 E-value=28 Score=19.36 Aligned_cols=38 Identities=21% Similarity=0.018 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDC 39 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (73)
.-|.+++.|..+...+.+..+.+.+.+.+.-+..++.+
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 45899999999998888888888888877666777665
No 161
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=58.89 E-value=51 Score=21.91 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=31.8
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCC----CcEEEEeCCCCccCCccChH
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELP----NAIIRQIPDCGHLPHVEKPG 49 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~ 49 (73)
|+|+-.+..|+-+-+..++.++..+. .+-++.-.++||.---...+
T Consensus 582 ~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~ 631 (648)
T COG1505 582 PTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAE 631 (648)
T ss_pred CeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHH
Confidence 68888999998887776666655442 34455556799997665544
No 162
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=58.71 E-value=13 Score=20.97 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=19.5
Q ss_pred CccEEEE--EcCCCcccCHHHHHHHHhhC-------CC----cEEEEeCCCCccCC
Q 037210 2 KQKTLII--WGEDDQIISSKLAVRLHCEL-------PN----AIIRQIPDCGHLPH 44 (73)
Q Consensus 2 ~~p~l~i--~g~~d~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~H~~~ 44 (73)
++|.+++ .+..+.+..+...+.+++.+ .+ ..+.-| |++||.+
T Consensus 89 ~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~-GG~HYap 143 (213)
T PF04414_consen 89 SVPSVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGF-GGGHYAP 143 (213)
T ss_dssp -SBEEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE--S-TT-H
T ss_pred CCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcccccccccceeEEe-cCcccch
Confidence 5677776 33444555555444444432 11 345555 7899854
No 163
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=56.75 E-value=30 Score=18.53 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.-.+..+.++.+++
T Consensus 67 ~~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~~ 104 (177)
T cd02010 67 RKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNG 104 (177)
T ss_pred CcEEEEEcchHHHhHHHHHHHHHHHCCCeEEEEEECCc
Confidence 46777777776554433322233333345555555544
No 164
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=56.75 E-value=24 Score=17.53 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=28.0
Q ss_pred HHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 22 VRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
..+...+|...+-.+|+.-|........+-...+..++....
T Consensus 41 ~~L~~~FP~~~LP~fP~~~~~~~~~~~~~R~~~L~~Yl~~Ll 82 (101)
T cd06896 41 SQLQKQFPSLALPEFPHWWHLPFTDSDHKRVRDLNHYLEQLL 82 (101)
T ss_pred HHHHHHCccccccCCCCccccCcccHHHHHHHHHHHHHHHHH
Confidence 345556788888889988787666555555566666665543
No 165
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=56.68 E-value=13 Score=17.17 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=20.8
Q ss_pred eCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 36 IPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 36 ~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+.++.|.+.+.+++.+.+.+..++.+.
T Consensus 37 ~~~~~~~~~~~~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 37 FEDGEHIITYNDPEELAEKIEYLLENP 63 (92)
T ss_pred cCCCCeEEEECCHHHHHHHHHHHHCCH
Confidence 555567878789999999998887643
No 166
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=55.42 E-value=38 Score=19.39 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCcEEEEeCCCCccCCcc-ChHHHHHHHHHHH
Q 037210 19 KLAVRLHCELPNAIIRQIPDCGHLPHVE-KPGAVAKLIVEFI 59 (73)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~ 59 (73)
...+++.+.+|+.++..+-+..|++.-+ .++++.+.+.+.+
T Consensus 12 tv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~ 53 (251)
T TIGR00067 12 SVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELL 53 (251)
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567888899999999999999999865 4555555554443
No 167
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=54.90 E-value=32 Score=18.33 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|+..-...........+..-+..+.++.++++
T Consensus 70 ~~vv~i~GDG~f~~~~~el~t~~~~~lp~~~iv~NN~~~ 108 (178)
T cd02014 70 RQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDL 108 (178)
T ss_pred CcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCch
Confidence 467888888876654333222233233456666666554
No 168
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=53.39 E-value=31 Score=17.84 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=31.2
Q ss_pred CcccCHHHHHHHHhh-CCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 13 DQIISSKLAVRLHCE-LPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 13 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
..++..-.++.++.. ....-+..|-..-||++..+-+...+.+..|+.+..
T Consensus 66 Kn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v 117 (127)
T PF06309_consen 66 KNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNV 117 (127)
T ss_pred HHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHHHHH
Confidence 334444445554332 222223444457899888888888889999887753
No 169
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=52.27 E-value=37 Score=18.34 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.. .+..++++.++++
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~y 99 (181)
T TIGR03846 60 RTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAY 99 (181)
T ss_pred CcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCcc
Confidence 57888899888765544333334333 3566666666554
No 170
>PHA00026 cp coat protein
Probab=52.09 E-value=16 Score=18.15 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=24.6
Q ss_pred EEEEeCCCCccCCccChHHHHHHHHHHHhhcCC
Q 037210 32 IIRQIPDCGHLPHVEKPGAVAKLIVEFIQENCI 64 (73)
Q Consensus 32 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 64 (73)
++..++++|-.-.-..|..+++-+.+|++...+
T Consensus 6 ~fvlvdnggtgdvtvapsnfangvaewis~nsr 38 (129)
T PHA00026 6 QFVLVDNGGTGDVTVAPSNFANGVAEWISNNSR 38 (129)
T ss_pred EEEEEecCCccceEEeccccchhHHHHHhcCcc
Confidence 456667777766666788888999999987654
No 171
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=51.49 E-value=39 Score=18.36 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhh-CCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCE-LPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~H 41 (73)
.|++.+.|+..-........-..+. .++..+.++.+++.
T Consensus 67 ~~Vv~i~GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~y 106 (188)
T cd03371 67 RKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAH 106 (188)
T ss_pred CcEEEEeCCcHHHhhccHHHHHHHcCCCCcEEEEEeCchh
Confidence 5789999999876543333333333 34566666766544
No 172
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=50.81 E-value=37 Score=17.88 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|+..-...........+..-+..+.++.+.++
T Consensus 67 ~~vv~i~GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~ 105 (172)
T cd02004 67 KRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGW 105 (172)
T ss_pred CeEEEEEcchhhcCCHHHHHHHHHcCCCEEEEEEECccc
Confidence 578888999876654433333333333455556665544
No 173
>PRK14866 hypothetical protein; Provisional
Probab=48.89 E-value=20 Score=22.65 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=23.4
Q ss_pred CCccEEEE-E-cCCCcccCHHHHHHHHh----hCC----C-cEEEEeCCCCccCCc
Q 037210 1 VKQKTLII-W-GEDDQIISSKLAVRLHC----ELP----N-AIIRQIPDCGHLPHV 45 (73)
Q Consensus 1 i~~p~l~i-~-g~~d~~~~~~~~~~~~~----~~~----~-~~~~~~~~~~H~~~~ 45 (73)
+++|.+++ . +..+.+..+...+.+++ ... . ..+.-| |+|||.+.
T Consensus 145 l~~Ps~FvEIGSte~eW~d~~a~~~vA~ail~~~~~~~~~~~~~iG~-GGgHYapr 199 (451)
T PRK14866 145 VGVPSLFVELGSTEKEWDDPDAARAVARAILDLRGVPPHTDRPLVGF-GGGHYAPR 199 (451)
T ss_pred CCCceEEEEeCCCHHHhCCcHHHHHHHHHHHHHhcccccCCCEEEEe-CCCCcchh
Confidence 35788887 3 33344555544444333 321 1 345555 78998653
No 174
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=48.87 E-value=16 Score=22.80 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=33.9
Q ss_pred EEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 6 l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
-++++++|-.++.+.++... +..+....++ +.|...+.++ .+.+.+..|+...
T Consensus 370 ~~~y~dGDGTV~~~S~~~~~--~~~~~~~~l~-~~H~~il~n~-~v~~~I~~fL~~g 422 (440)
T PLN02733 370 EYTYVDGDGTVPVESAKADG--LNAVARVGVP-GDHRGILRDE-HVFRILKHWLKVG 422 (440)
T ss_pred eEEEeCCCCEEecchhhccC--ccccccccCC-chHHHHhcCH-HHHHHHHHHHhcC
Confidence 46677788888766654321 2223334555 7898887665 5677888988654
No 175
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.44 E-value=82 Score=21.27 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=27.1
Q ss_pred EEEEEcCCCcccCHHHHHHH----HhhC-------CCcEEEEeCCCCccCCccChHHH
Q 037210 5 TLIIWGEDDQIISSKLAVRL----HCEL-------PNAIIRQIPDCGHLPHVEKPGAV 51 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~H~~~~~~~~~~ 51 (73)
+|+..+.+|..+++.....| .... +++-+.+-.++||+.-.-..+.+
T Consensus 635 ~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~ 692 (712)
T KOG2237|consen 635 MLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQI 692 (712)
T ss_pred eEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHH
Confidence 67788999777665322222 2221 12446666789998654444444
No 176
>PRK00865 glutamate racemase; Provisional
Probab=46.97 E-value=55 Score=18.79 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCcEEEEeCCCCccCCcc-ChHHHHHHHHHH
Q 037210 19 KLAVRLHCELPNAIIRQIPDCGHLPHVE-KPGAVAKLIVEF 58 (73)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~ 58 (73)
...+++.+.+|+..+.++-+..|++.-+ .++.+.+.+.+.
T Consensus 19 tvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~ 59 (261)
T PRK00865 19 TVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEI 59 (261)
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999865 444554444443
No 177
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=46.73 E-value=33 Score=16.06 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=17.0
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL 28 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~ 28 (73)
.-|++++.+.+...++..+.+.+...+
T Consensus 38 ~PPtFv~f~N~~~~~~~sY~ryL~n~l 64 (80)
T PF14714_consen 38 RPPTFVLFVNDPELLPESYKRYLENQL 64 (80)
T ss_dssp TTTEEEEEES-CCC--HHHHHHHHHHH
T ss_pred CCCEEEEEeCCcccCCHHHHHHHHHHH
Confidence 458889998887788877666655543
No 178
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=46.55 E-value=59 Score=18.98 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=22.4
Q ss_pred cCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHH
Q 037210 16 ISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVE 57 (73)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 57 (73)
+.......+.+..|+..+....+ |-|-..+. +.+.+.|..
T Consensus 120 V~~~a~~~l~~~~p~l~ivg~h~-GYf~~~e~-~~i~~~I~~ 159 (253)
T COG1922 120 VAEQAAAKLRAKYPGLKIVGSHD-GYFDPEEE-EAIVERIAA 159 (253)
T ss_pred HHHHHHHHHHHHCCCceEEEecC-CCCChhhH-HHHHHHHHh
Confidence 44466677888888777665543 33323333 445554443
No 179
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=45.57 E-value=47 Score=17.53 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|+...........-..+.--+..+.++.+.++
T Consensus 68 ~~vv~i~GDG~f~~~~~el~ta~~~~~p~~~iV~nN~~~ 106 (178)
T cd02002 68 RKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGY 106 (178)
T ss_pred CeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEcCccH
Confidence 468888888886655443333333333456666666543
No 180
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=44.63 E-value=51 Score=17.71 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCCCCcc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPDCGHL 42 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~H~ 42 (73)
.+++.+.|++.-...........+.. ++..+.++.+.++.
T Consensus 60 ~~vv~i~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~ 100 (179)
T cd03372 60 RKVIVIDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYG 100 (179)
T ss_pred CcEEEEECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCcccc
Confidence 36888999988765544333333333 45667777776543
No 181
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=44.47 E-value=54 Score=17.97 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 67 ~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 105 (205)
T cd02003 67 REVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGF 105 (205)
T ss_pred CeEEEEEccchhhccHHHHHHHHHcCCCCEEEEEECCcc
Confidence 578889999987765443333333333466666766554
No 182
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=44.18 E-value=52 Score=17.70 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.+++.+.|+..-........-..+...+..+.++.+++
T Consensus 69 ~~vv~i~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~ 106 (183)
T cd02005 69 RRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDG 106 (183)
T ss_pred CeEEEEECCchhhccHHHHHHHHHhCCCCEEEEEECCC
Confidence 46888899888766543333333333344444454433
No 183
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=44.14 E-value=55 Score=17.99 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=43.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCC--cEEEEeCCCC--ccCCccChHHHHHHHHHHHhhcC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPN--AIIRQIPDCG--HLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~--H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
.+.+++.+.+-++++++..+.+.+.... .........| |-++.-....+.+.+..++....
T Consensus 87 ~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~~~~~g~~~Pl~aly~~~l~~~l~~~l~~g~ 151 (192)
T COG0746 87 TEWVLVLPCDMPFIPPELVERLLSAFKQTGAAIVPAHDDGRLEPLFALYHRALLPALEEYLAKGE 151 (192)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHhhcccCCcEEEeCCCCceeeEEEEehHHHHHHHHHHHHhCC
Confidence 4567888888899999988888877753 2333333445 55554557889999999987765
No 184
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=42.71 E-value=55 Score=17.54 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 69 ~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~ 106 (186)
T cd02015 69 KTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGS 106 (186)
T ss_pred CeEEEEEcccHHhccHHHHHHHHHhCCCeEEEEEECCc
Confidence 46777888877655433222222222345555565544
No 185
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=42.71 E-value=54 Score=17.50 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=18.5
Q ss_pred EEEEcCCCcccCHHHHHHHHhhCCCcEEEEeC
Q 037210 6 LIIWGEDDQIISSKLAVRLHCELPNAIIRQIP 37 (73)
Q Consensus 6 l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~ 37 (73)
+++.|+...... ...+.+.+..|+..+....
T Consensus 49 v~llG~~~~~~~-~~~~~l~~~yp~l~i~g~~ 79 (171)
T cd06533 49 VFLLGAKPEVLE-KAAERLRARYPGLKIVGYH 79 (171)
T ss_pred EEEECCCHHHHH-HHHHHHHHHCCCcEEEEec
Confidence 344455443333 4556778888988877643
No 186
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=42.40 E-value=71 Score=18.75 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=29.7
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccC-CccChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLP-HVEKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~~~ 59 (73)
.+|++++.|++ .++ ++..+.+|..+....+.+--+. .--.|+...+.|.+-.
T Consensus 147 gVPV~lvsGD~-~~~-----~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~ 199 (263)
T cd08770 147 GVPVVFVSGDA-GLC-----AEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGV 199 (263)
T ss_pred CCCEEEEecCH-HHH-----HHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHH
Confidence 58999999874 232 3445567887766665421121 1235666665555554
No 187
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=41.82 E-value=76 Score=18.91 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCcc-cCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQI-ISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.+++.+.|++|.+ .......-..+...+..++++.+.+
T Consensus 89 ~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~ 127 (301)
T PRK05778 89 LEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGI 127 (301)
T ss_pred CcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCch
Confidence 4789999999963 4433323333344456666665543
No 188
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=41.75 E-value=33 Score=18.57 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=21.7
Q ss_pred eCCCCccCC-ccChHHHHHHHHHHHhhc
Q 037210 36 IPDCGHLPH-VEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 36 ~~~~~H~~~-~~~~~~~~~~~~~~~~~~ 62 (73)
++-+.|.+. ++.++++.+.+..|+...
T Consensus 16 ~~~g~H~c~~Y~~~~e~~~~~~~Fi~~G 43 (191)
T PF14417_consen 16 IPWGDHICAFYDDEEELLEVLVPFIREG 43 (191)
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHHH
Confidence 455688774 689999999999998764
No 189
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=41.28 E-value=68 Score=18.20 Aligned_cols=40 Identities=5% Similarity=-0.093 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCc-ccCHHHHHHHHhhCCCcEEEEeCCCCcc
Q 037210 3 QKTLIIWGEDDQ-IISSKLAVRLHCELPNAIIRQIPDCGHL 42 (73)
Q Consensus 3 ~p~l~i~g~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 42 (73)
.|++.+.|+++. ...........+.-.+..+++++++++-
T Consensus 81 r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg 121 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYM 121 (235)
T ss_pred CeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 589999999983 2333333333333345777777776543
No 190
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=41.23 E-value=18 Score=15.23 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=11.0
Q ss_pred cEEEEeCCCCccCCc
Q 037210 31 AIIRQIPDCGHLPHV 45 (73)
Q Consensus 31 ~~~~~~~~~~H~~~~ 45 (73)
.+--+|||-||+-+.
T Consensus 30 aEsPv~PGn~hlQP~ 44 (45)
T PF08384_consen 30 AESPVFPGNGHLQPL 44 (45)
T ss_pred CCCCccCCCcccCCC
Confidence 456688999998543
No 191
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=40.58 E-value=37 Score=18.06 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|+..-........-..+.-.+..+.++.+++
T Consensus 69 ~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~ 106 (175)
T cd02009 69 KPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNG 106 (175)
T ss_pred CCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCC
Confidence 46777788776655433222223332345566666654
No 192
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=40.26 E-value=58 Score=17.10 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhh-CCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCE-LPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+. -.+..+.++.+.++
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~ 99 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAY 99 (157)
T ss_pred CcEEEEECchHHHhcccHHHHHHHhcCCCEEEEEEeCccc
Confidence 4788888888765443333333333 23455666666543
No 193
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=39.80 E-value=80 Score=18.56 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCC-Cc-cCCccChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDC-GH-LPHVEKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~H-~~~~~~~~~~~~~~~~~~ 59 (73)
.+|+.++.|+. ...++..+.+|..+....+.+ |. -...-.|+...+.|.+-.
T Consensus 147 GVPV~lVsGD~------~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~~a 200 (265)
T PF04951_consen 147 GVPVVLVSGDD------ALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIREAA 200 (265)
T ss_dssp T--EEEEEEEH------HHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHHHH
T ss_pred CCcEEEEeCcH------HHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHHHH
Confidence 58999999874 334566778888776666542 22 222345665555555443
No 194
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=39.57 E-value=60 Score=17.29 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=24.2
Q ss_pred CcEEEEeCCCCccCCccCh-HHHHHHHHHHHhhc
Q 037210 30 NAIIRQIPDCGHLPHVEKP-GAVAKLIVEFIQEN 62 (73)
Q Consensus 30 ~~~~~~~~~~~H~~~~~~~-~~~~~~~~~~~~~~ 62 (73)
+.....+||+.|......+ +.+.+.+++|....
T Consensus 66 ~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~ 99 (188)
T COG0693 66 DYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANG 99 (188)
T ss_pred HCCEEEECCCccchhhccCcHHHHHHHHHHHHcC
Confidence 4667889976599877665 67777777777653
No 195
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=39.38 E-value=76 Score=18.24 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 6 LIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 6 l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
++|.|..|........+.+.+... +.++.++|.++. .|+...+.....+...
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~-----~~~~~~~~~~~~~~~l 55 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRAGGEDAIIVIITSASE-----EPREVGERYITIFSRL 55 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCC-----ChHHHHHHHHHHHHHc
Confidence 566777777666556666666653 357888887653 3444455555555443
No 196
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=39.22 E-value=82 Score=18.55 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCC-CCccCC-ccChHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPD-CGHLPH-VEKPGAVAKLIVEF 58 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~H~~~-~~~~~~~~~~~~~~ 58 (73)
.+|+.++.|++ ...++..+.+|..+....+. -|++.- --.|+...+.|.+-
T Consensus 147 gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~a 199 (270)
T cd08769 147 GVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREA 199 (270)
T ss_pred CCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHH
Confidence 58999999985 23355566778877776654 333332 22444444444433
No 197
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=37.87 E-value=1.1e+02 Score=19.72 Aligned_cols=39 Identities=8% Similarity=-0.091 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.++++
T Consensus 427 r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 465 (574)
T PRK09124 427 RQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVL 465 (574)
T ss_pred CeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 467888888876655443333343333455556666544
No 198
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=37.73 E-value=68 Score=17.14 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=20.2
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELPN 30 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~~ 30 (73)
+..|+.++.+..|+.........+.+..+.
T Consensus 74 l~G~~al~fs~~d~~~~~k~l~~f~K~~~~ 103 (172)
T PRK00099 74 LKGPTAIAFSYEDPVAAAKVLKDFAKDNKK 103 (172)
T ss_pred CcCCeEEEEeCCChHHHHHHHHHHHhhCcC
Confidence 356888888887877666666666555544
No 199
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=37.51 E-value=26 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.5
Q ss_pred CccEEEEEcCCCcccCHH
Q 037210 2 KQKTLIIWGEDDQIISSK 19 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~ 19 (73)
++|+++|.|+.|..-...
T Consensus 75 ~Ipv~~I~GNHD~~~~~~ 92 (390)
T COG0420 75 GIPVVVIAGNHDSPSRLS 92 (390)
T ss_pred CCcEEEecCCCCchhccc
Confidence 589999999999866433
No 200
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=36.17 E-value=82 Score=17.86 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCcccCHHHHHH---HHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 3 QKTLIIWGEDDQIISSKLAVR---LHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+|+|+|.-+.|.++++.+... --+..|.-.+..+.-=|-.-..++.+++.+.+...-+.
T Consensus 72 ~~vLvvFqgpdAYISP~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~ 133 (209)
T COG2808 72 QPVLVVFQGPDAYISPAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDE 133 (209)
T ss_pred CeEEEEEeCCCcccCcccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHH
Confidence 578888888888888776432 12233433333332223444566776666666554443
No 201
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=35.97 E-value=65 Score=19.48 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=34.0
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCc-EEEEeCCCCccCCccChHHHHHHHH
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNA-IIRQIPDCGHLPHVEKPGAVAKLIV 56 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~H~~~~~~~~~~~~~~~ 56 (73)
+|+-++.|.-+.-......+.+++.+..+ +.-++++ .-|+++|....--.+|.
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-YgFVHiEdktaaedair 54 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-YGFVHIEDKTAAEDAIR 54 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhhCceEeeeeecc-cceEEeecccccHHHHh
Confidence 35556677777666666777788888764 4445554 77888876554444443
No 202
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=35.95 E-value=31 Score=21.42 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.5
Q ss_pred CccEEEEEcCCCcccC
Q 037210 2 KQKTLIIWGEDDQIIS 17 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~ 17 (73)
.+|+++|+|..|....
T Consensus 110 ~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 110 AIPVFSIHGNHDDPSG 125 (405)
T ss_pred CCCEEEEcCCCCCccc
Confidence 5799999999998653
No 203
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=35.50 E-value=1.2e+02 Score=19.63 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-..+.--+..+.++.++++
T Consensus 438 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~ 476 (586)
T PRK06276 438 ANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRTL 476 (586)
T ss_pred CcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCch
Confidence 467888888877766443333333333566666766543
No 204
>COG3910 Predicted ATPase [General function prediction only]
Probab=35.39 E-value=90 Score=17.87 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 28 LPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 28 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+|+.+++.|..+|+-...-..-.-.+.++.|+++..
T Consensus 193 iP~A~I~~~~~~g~~~~~fe~te~~r~lR~Fl~dp~ 228 (233)
T COG3910 193 IPGAEIYEISESGIEERDFEETEHFRALRDFLNDPE 228 (233)
T ss_pred CCCcEEEEEecCCccccchHHHHHHHHHHHHHhCHH
Confidence 467788888877765432222234667888887654
No 205
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=35.11 E-value=80 Score=17.21 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCc-ccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQ-IISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.. ........-..+.--++.+.++.+.++
T Consensus 70 r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~y 109 (193)
T cd03375 70 LTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQIY 109 (193)
T ss_pred CeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCccc
Confidence 578899999983 233232222233333455555655443
No 206
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=35.08 E-value=99 Score=18.28 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCCccCCcc-ChHHHHHHHHH
Q 037210 18 SKLAVRLHCELPNAIIRQIPDCGHLPHVE-KPGAVAKLIVE 57 (73)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~ 57 (73)
....+++.+.+|+.++.++-+..+++.-+ .++.+.+...+
T Consensus 18 LsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~ 58 (269)
T COG0796 18 LSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLE 58 (269)
T ss_pred HHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 45678889999999999998999998866 44444444333
No 207
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=35.07 E-value=61 Score=16.48 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHh---hCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHC---ELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
.|.+++++.+|.++. ..+.+.. ..|...+.-+|+-+-|.+. .-+-..+.+.+|+.+
T Consensus 55 ap~~f~~a~ede~td--sLRDf~nL~d~~P~LviLDip~r~~~v~~-~eeIT~e~~~~fv~~ 113 (116)
T cd03071 55 APLLFFVAGEDDMTD--SLRDYTNLPEAAPLLTILDMSARAKYVMD-VEEITPAIVEAFVSD 113 (116)
T ss_pred cceeeeeeccchHHH--HHHHhcCCCccCceEEEEeccccceEeCc-hHhcCHHHHHHHHHH
Confidence 356666666665542 1122111 1122334445544444332 233445555555543
No 208
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=34.66 E-value=83 Score=19.26 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhC-CCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCEL-PNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~H 41 (73)
.+++++.|++.-...........+.- .+...+++.+++|
T Consensus 240 r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~ 279 (361)
T TIGR03297 240 QRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAH 279 (361)
T ss_pred CCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccc
Confidence 46888888887655443333333333 3677777877776
No 209
>PRK12474 hypothetical protein; Provisional
Probab=34.24 E-value=1.3e+02 Score=19.21 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 408 r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y 446 (518)
T PRK12474 408 RKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFANRSY 446 (518)
T ss_pred CcEEEEEcCchhcchHHHHHHHHHHCCCcEEEEEcCCcc
Confidence 578889999987776554444444444566666666544
No 210
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.55 E-value=81 Score=16.84 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=19.8
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeC
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCELPNAIIRQIP 37 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~ 37 (73)
.+++.|+.+.... ...+.+.+..|+..+....
T Consensus 50 ~ifllG~~~~~~~-~~~~~l~~~yP~l~ivg~~ 81 (172)
T PF03808_consen 50 RIFLLGGSEEVLE-KAAANLRRRYPGLRIVGYH 81 (172)
T ss_pred eEEEEeCCHHHHH-HHHHHHHHHCCCeEEEEec
Confidence 3445555544333 5667778888888777554
No 211
>COG4099 Predicted peptidase [General function prediction only]
Probab=33.52 E-value=41 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.0
Q ss_pred CccEEEEEcCCCcccCHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAV 22 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~ 22 (73)
+.|.+++++.+|.+.|.+.+.
T Consensus 315 ~~piWvfhs~dDkv~Pv~nSr 335 (387)
T COG4099 315 KAPIWVFHSSDDKVIPVSNSR 335 (387)
T ss_pred cCceEEEEecCCCccccCcce
Confidence 468999999999998876433
No 212
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=33.43 E-value=80 Score=16.72 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=22.5
Q ss_pred CcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 30 NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 30 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+.++..+| +-|+...++.+...+.+.+|-+.
T Consensus 49 KGRv~l~P-~~~Y~~~~~~~~~~~~L~~w~~~ 79 (142)
T PF10673_consen 49 KGRVLLFP-AFTYLKEEDEEELVERLNDWCEE 79 (142)
T ss_pred CceEEecC-CeeeecccchhHHHHHHHHHHHH
Confidence 46788888 57888888888777667666443
No 213
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=32.99 E-value=1.4e+02 Score=19.33 Aligned_cols=38 Identities=5% Similarity=0.080 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 437 ~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~ 474 (566)
T PRK07282 437 KEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHS 474 (566)
T ss_pred CcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCC
Confidence 46888888888777654444444443345566666643
No 214
>PRK08611 pyruvate oxidase; Provisional
Probab=32.82 E-value=1.4e+02 Score=19.35 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..++++.++++
T Consensus 427 ~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~ 465 (576)
T PRK08611 427 RQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQL 465 (576)
T ss_pred CcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 467777777766655433333333222344555555443
No 215
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=32.52 E-value=78 Score=16.29 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|+...........-....-.+..+.++.+.++
T Consensus 65 ~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~iv~nN~~~ 103 (168)
T cd00568 65 RPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGY 103 (168)
T ss_pred CcEEEEEcCcHHhccHHHHHHHHHcCCCcEEEEEECCcc
Confidence 467888888876654333322233333455556666544
No 216
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=32.45 E-value=1.4e+02 Score=19.19 Aligned_cols=39 Identities=5% Similarity=-0.075 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 416 ~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~ 454 (549)
T PRK06457 416 RQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKL 454 (549)
T ss_pred CeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECCcc
Confidence 467778888776665433333333222344555555443
No 217
>PLN02573 pyruvate decarboxylase
Probab=31.32 E-value=1.2e+02 Score=19.67 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 447 r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~y 485 (578)
T PLN02573 447 KRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGY 485 (578)
T ss_pred CceEEEEeccHHHhHHHHHHHHHHcCCCCEEEEEeCCce
Confidence 468888888887665444444444433455555555543
No 218
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=30.94 E-value=87 Score=16.37 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=18.7
Q ss_pred CCccEEEEEcCCCcccCHHHHHHHHhhCC
Q 037210 1 VKQKTLIIWGEDDQIISSKLAVRLHCELP 29 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~~~~~~~~~~~~~~ 29 (73)
+..|+.++.+..|+.........+.+..+
T Consensus 73 l~G~~al~f~~~d~~~~~k~l~~f~k~~~ 101 (157)
T cd05797 73 LKGPTAIAFSEEDPVAAAKVLKDFAKENK 101 (157)
T ss_pred CcCCEEEEEeCCChHHHHHHHHHHHHhCC
Confidence 35688888888776655555555555444
No 219
>PRK06163 hypothetical protein; Provisional
Probab=30.85 E-value=1e+02 Score=17.12 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhh-CCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCE-LPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-+.+. ..+..++++.+.++
T Consensus 76 r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~y 115 (202)
T PRK06163 76 RRVIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVY 115 (202)
T ss_pred CeEEEEEcchHHHHHHHHHHHHHHhcCCCeEEEEEcCCch
Confidence 4688888888755443333333333 23456666666544
No 220
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=30.57 E-value=29 Score=17.86 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 037210 49 GAVAKLIVEFI 59 (73)
Q Consensus 49 ~~~~~~~~~~~ 59 (73)
+++.+.+.+.+
T Consensus 133 ~el~~al~~a~ 143 (153)
T PF02775_consen 133 EELEEALREAL 143 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555554444
No 221
>PHA02894 hypothetical protein; Provisional
Probab=30.22 E-value=21 Score=17.28 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPH 44 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 44 (73)
.|-++..|++.+.+-......+-+...++++-.+++ -|+.+
T Consensus 19 ~p~lf~i~~~k~~cvc~ryslips~~envq~s~id~-~h~yf 59 (97)
T PHA02894 19 IPQLFTIGDKKPICVCNRYSLIPSKKENVQISRIDD-IHLYF 59 (97)
T ss_pred cceeEEecCCCeEEEEeeeeeccCCCCceEEEEEec-eeeee
Confidence 477888888888876554433444445677777765 56544
No 222
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=29.85 E-value=96 Score=16.52 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCcccC-HHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIIS-SKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|+.+-... ........+.-.+..+.++.+.+.
T Consensus 70 ~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~ 109 (178)
T cd02008 70 KKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTT 109 (178)
T ss_pred CCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcce
Confidence 478899999887543 232222233333566667766554
No 223
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=29.85 E-value=1.4e+02 Score=19.08 Aligned_cols=38 Identities=11% Similarity=0.245 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 423 ~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~ 460 (539)
T TIGR03393 423 RRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEG 460 (539)
T ss_pred CCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 47888999988766554444444443345555555544
No 224
>PRK07064 hypothetical protein; Provisional
Probab=29.74 E-value=1.5e+02 Score=18.87 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-..+.--+..+.++.++++
T Consensus 424 ~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~y 462 (544)
T PRK07064 424 RKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDGGY 462 (544)
T ss_pred CcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEeCChh
Confidence 467777777766554332222222222445555555443
No 225
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=29.06 E-value=43 Score=19.07 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=10.7
Q ss_pred CccEEEEEcCCCc
Q 037210 2 KQKTLIIWGEDDQ 14 (73)
Q Consensus 2 ~~p~l~i~g~~d~ 14 (73)
.+||++++..++-
T Consensus 161 nlPTl~VY~~G~l 173 (240)
T KOG3170|consen 161 NLPTLLVYHHGAL 173 (240)
T ss_pred CCCeEEEeecchH
Confidence 5799999998863
No 226
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=28.88 E-value=1.7e+02 Score=19.04 Aligned_cols=40 Identities=3% Similarity=-0.100 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCcc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHL 42 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 42 (73)
.+++.+.|+++-........-..+.--+..++++.++++.
T Consensus 427 ~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN~~~g 466 (578)
T PRK06546 427 RQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNSTLG 466 (578)
T ss_pred CcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEEECCccc
Confidence 4677888888766543322222332224555566665543
No 227
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=28.66 E-value=1.5e+02 Score=18.41 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=34.5
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhC---CCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCEL---PNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
+.|+++|.-++ +-..+....+.+-. ..-.+.++.|+=|-.+-+-|-.+-+.+..++.
T Consensus 287 rqP~~finv~~--fQ~~en~~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~ 346 (399)
T KOG3847|consen 287 RQPTLFINVED--FQWNENLLVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFK 346 (399)
T ss_pred cCCeEEEEccc--ccchhHHHHHHhhhCCCccceEEEEccceecccccCccccHHHHHHHhc
Confidence 56899998553 33334444444433 34568888898887666655555555555544
No 228
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=28.52 E-value=1.7e+02 Score=18.90 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 433 ~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y 471 (561)
T PRK06048 433 KTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYL 471 (561)
T ss_pred CcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEEECCcc
Confidence 467888888876665443333333333455556655443
No 229
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=28.50 E-value=59 Score=21.05 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=13.4
Q ss_pred cChHHHHHHHHHHHhh
Q 037210 46 EKPGAVAKLIVEFIQE 61 (73)
Q Consensus 46 ~~~~~~~~~~~~~~~~ 61 (73)
++|+.++++++.|+.+
T Consensus 525 e~PeevA~ilr~Wl~e 540 (542)
T PRK06007 525 EDPEEVAQVLRTWLSE 540 (542)
T ss_pred hCHHHHHHHHHHHhcC
Confidence 6888889999888865
No 230
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=28.12 E-value=1.3e+02 Score=18.31 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=20.8
Q ss_pred CCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCc
Q 037210 11 EDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 11 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 45 (73)
.....+.+.. .++....++..+..+|++||...-
T Consensus 231 ~~~~~~~~~~-~~L~~~~~~~~llvYPNsGe~yd~ 264 (317)
T KOG1579|consen 231 VSPNFVEPLL-KELMAKLTKIPLLVYPNSGEVYDN 264 (317)
T ss_pred CCchhccHHH-HHHhhccCCCeEEEecCCCCCCcc
Confidence 3333444333 333356677889999999986544
No 231
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.08 E-value=1.7e+02 Score=19.03 Aligned_cols=39 Identities=8% Similarity=-0.141 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..++++.++++
T Consensus 454 r~vv~i~GDG~f~~~~~el~Ta~~~~lpv~ivV~NN~~y 492 (588)
T PRK07525 454 RPVVGFAGDGAWGISMNEVMTAVRHNWPVTAVVFRNYQW 492 (588)
T ss_pred CcEEEEEcCchHhccHHHHHHHHHhCCCeEEEEEeCchh
Confidence 467788888866655332222222222355555666554
No 232
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=27.98 E-value=2.1e+02 Score=19.79 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=40.5
Q ss_pred cEEEEEcCCCcccCHHH----HHHHHhhCCCcEEEEeCCCCccCC-ccChHHHHHHHHHHHhh
Q 037210 4 KTLIIWGEDDQIISSKL----AVRLHCELPNAIIRQIPDCGHLPH-VEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~~~~~ 61 (73)
..|+++|-=|.=+--.. ..++.+.-+.-++.+||+-.|.+= .+.....-..+..|++.
T Consensus 804 RLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 804 RLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred eEEEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 47888998887664332 333333344578999999999873 56666777788888875
No 233
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=27.80 E-value=1.4e+02 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.4
Q ss_pred ccEEEEEcCCCcc
Q 037210 3 QKTLIIWGEDDQI 15 (73)
Q Consensus 3 ~p~l~i~g~~d~~ 15 (73)
.+++.+.|++|-+
T Consensus 72 ~~VVai~GDG~f~ 84 (287)
T TIGR02177 72 LKVIVVGGDGDLY 84 (287)
T ss_pred CcEEEEeCchHHH
Confidence 5789999999843
No 234
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=27.68 E-value=1.7e+02 Score=18.75 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 420 ~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~ 457 (548)
T PRK08978 420 DTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQR 457 (548)
T ss_pred CcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 46777888877666543333223333345555555543
No 235
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=27.48 E-value=1.2e+02 Score=16.89 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=29.9
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCC--CcEEEEeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELP--NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
+++++.|..++.......+.+.+... +.++.+++-++-- ++...+.+...+..
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~-----~~~~~~~~~~~~~~ 55 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEE-----PAEVGEEYRDVFER 55 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcC-----hhHHHHHHHHHHHH
Confidence 45677777765455556666666653 5667777665432 34444444444444
No 236
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.14 E-value=1.8e+02 Score=18.77 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|+++-........-..+.--+..+.++.++++
T Consensus 438 ~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~ 476 (564)
T PRK08155 438 RKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEAL 476 (564)
T ss_pred CcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 478888888887765433333333333455566666544
No 237
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.13 E-value=1.8e+02 Score=18.82 Aligned_cols=38 Identities=11% Similarity=-0.066 Sum_probs=18.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..++++.+++
T Consensus 442 r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~ivV~NN~~ 479 (574)
T PRK06466 442 QDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGA 479 (574)
T ss_pred CeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 35677777776655543322233322234444454443
No 238
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.12 E-value=1.8e+02 Score=18.78 Aligned_cols=39 Identities=5% Similarity=-0.114 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++++.|++.-........-..+.--+..++++.++++
T Consensus 433 ~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~~ 471 (563)
T PRK08527 433 KVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFL 471 (563)
T ss_pred CcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEECCcc
Confidence 467888888887765433332233322345555655443
No 239
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=27.08 E-value=1.4e+02 Score=17.62 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCc-ccCHHHHHHHHhhCCCcEEEEeCC
Q 037210 3 QKTLIIWGEDDQ-IISSKLAVRLHCELPNAIIRQIPD 38 (73)
Q Consensus 3 ~p~l~i~g~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 38 (73)
.+++.+.|++|- ...........+..-+..++++.+
T Consensus 88 ~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN 124 (286)
T PRK11867 88 LTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNN 124 (286)
T ss_pred CcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeC
Confidence 478999999983 333332223233333455555544
No 240
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=26.78 E-value=1.3e+02 Score=17.08 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=21.4
Q ss_pred CcEEEEeCCCCccCCcc--ChHHHHHHHHHHHhhc
Q 037210 30 NAIIRQIPDCGHLPHVE--KPGAVAKLIVEFIQEN 62 (73)
Q Consensus 30 ~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~~~~~ 62 (73)
+...+.+|| ||..+.+ +-+.+.+++..|....
T Consensus 96 dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~g 129 (232)
T cd03148 96 EYAAVFIPG-GHGALIGIPESQDVAAALQWAIKND 129 (232)
T ss_pred hceEEEECC-CCCChhhcccCHHHHHHHHHHHHcC
Confidence 346678885 7887643 4446778888777554
No 241
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=26.76 E-value=1.9e+02 Score=18.86 Aligned_cols=38 Identities=11% Similarity=-0.100 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.-.+..+.++.+++
T Consensus 449 ~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~~~vV~NN~~ 486 (585)
T CHL00099 449 ELVICISGDASFQMNLQELGTIAQYNLPIKIIIINNKW 486 (585)
T ss_pred CeEEEEEcchhhhhhHHHHHHHHHhCCCeEEEEEECCc
Confidence 46888888887776644333333333345666666654
No 242
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=26.46 E-value=1.8e+02 Score=18.67 Aligned_cols=39 Identities=8% Similarity=-0.137 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-..+.--+..+.++.++++
T Consensus 431 ~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~~~ 469 (558)
T TIGR00118 431 STVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYL 469 (558)
T ss_pred CcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCCch
Confidence 367777888776654332222233333455566665543
No 243
>PHA02546 47 endonuclease subunit; Provisional
Probab=26.38 E-value=1.1e+02 Score=18.40 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=11.8
Q ss_pred CccEEEEEcCCCcc
Q 037210 2 KQKTLIIWGEDDQI 15 (73)
Q Consensus 2 ~~p~l~i~g~~d~~ 15 (73)
.+|++++.|+.|..
T Consensus 76 gi~v~~I~GNHD~~ 89 (340)
T PHA02546 76 GITLHVLVGNHDMY 89 (340)
T ss_pred CCeEEEEccCCCcc
Confidence 47899999999975
No 244
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=26.28 E-value=1.9e+02 Score=18.86 Aligned_cols=39 Identities=8% Similarity=-0.135 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-..+.--+..+.++.++++
T Consensus 437 r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN~~y 475 (588)
T TIGR01504 437 RNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAYL 475 (588)
T ss_pred CcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCch
Confidence 468888888887665443333343333455666666555
No 245
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=26.21 E-value=1.7e+02 Score=18.24 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCcccCH--HHHHHHHhhCCC-----cEEEEeCCCCccCC
Q 037210 3 QKTLIIWGEDDQIISS--KLAVRLHCELPN-----AIIRQIPDCGHLPH 44 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~H~~~ 44 (73)
+.+++++|+..-+.+. +.++.+.+.-+. ..+.+-++|.|--+
T Consensus 303 ~~vfVi~Ge~EvfrddI~~~~~~~~~~~~~~~~~~~nv~~~~~G~Hi~P 351 (374)
T PF10340_consen 303 YSVFVIYGEDEVFRDDILEWAKKLNDVKPNKFSNSNNVYIDEGGIHIGP 351 (374)
T ss_pred CcEEEEECCccccHHHHHHHHHHHhhcCccccCCcceEEEecCCccccc
Confidence 4577888886544331 123333322222 35566667778654
No 246
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=25.93 E-value=79 Score=14.24 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.4
Q ss_pred CccChHHHHHHHHHHHh
Q 037210 44 HVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 44 ~~~~~~~~~~~~~~~~~ 60 (73)
++++|+++.+++...-+
T Consensus 22 ~Y~~Pe~Vi~iIN~lR~ 38 (63)
T PF03295_consen 22 FYEDPEEVINIINELRN 38 (63)
T ss_pred eccCHHHHHHHHHHhhh
Confidence 67899999998876543
No 247
>PRK08322 acetolactate synthase; Reviewed
Probab=25.89 E-value=1.9e+02 Score=18.55 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-..+.--+..+.++.++++
T Consensus 425 ~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~ 463 (547)
T PRK08322 425 RKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAY 463 (547)
T ss_pred CcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCCc
Confidence 467777777766554333222233333455555555443
No 248
>PLN02470 acetolactate synthase
Probab=25.80 E-value=2e+02 Score=18.76 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..++++.+++
T Consensus 445 ~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV~NN~~ 482 (585)
T PLN02470 445 AIVVDIDGDGSFIMNIQELATIHVENLPVKIMVLNNQH 482 (585)
T ss_pred CcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 46888888888777654444444443345666666643
No 249
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=25.63 E-value=1.2e+02 Score=19.48 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.++|
T Consensus 443 ~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g 480 (568)
T PRK07449 443 KPTVALIGDLSFLHDLNGLLLLKQVPAPLTIVVVNNNG 480 (568)
T ss_pred CCEEEEechHHhhcCcHHHHhhcccCCCeEEEEEECCC
Confidence 57888999988776532222222333346666676665
No 250
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=1.4e+02 Score=22.11 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=31.1
Q ss_pred EEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHH
Q 037210 8 IWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIV 56 (73)
Q Consensus 8 i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 56 (73)
+.|++| .|.++..++++.+.+-++++ |.-+|......+..+...+.
T Consensus 674 ~n~g~D--FpreyLseiY~SIk~~EIvm-Pee~hG~~~~~~~~W~~L~~ 719 (1386)
T KOG0928|consen 674 INGGKD--FPREYLSEIYQSIKTNEIVM-PEEHHGTEEMFEYRWINLIS 719 (1386)
T ss_pred ccCCCC--CCHHHHHHHHHHHhhcceec-ccccCCchhhhHHHHHHHHh
Confidence 344445 78889999999998777766 65566655556665555443
No 251
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=25.60 E-value=1.5e+02 Score=17.47 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCC-CCccCC-ccChHHHHHHHHHHH
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPD-CGHLPH-VEKPGAVAKLIVEFI 59 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~H~~~-~~~~~~~~~~~~~~~ 59 (73)
.+|+.++.|++ .++ ++..+..|..+....+. -|.+.- --.|++..+.|.+-.
T Consensus 147 gVPV~lVsGDd-~~~-----~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a 200 (266)
T cd08663 147 GVPVVLVTGDD-AAC-----AEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAA 200 (266)
T ss_pred CCCEEEEecCH-HHH-----HHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHH
Confidence 58999998874 222 34455678877766654 232322 235555555555444
No 252
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=25.26 E-value=1.7e+02 Score=17.73 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=23.0
Q ss_pred EcCCCcccCHH-H-HHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHh
Q 037210 9 WGEDDQIISSK-L-AVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQ 60 (73)
Q Consensus 9 ~g~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~ 60 (73)
.++.+.+.++. . .+.+.+..-...+..|+| ||--- .+...+.+++.
T Consensus 246 g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~G-gHdw~-----~Wr~~l~~~L~ 293 (299)
T COG2382 246 GGEEGDFLRPNRALAAQLEKKGIPYYYREYPG-GHDWA-----WWRPALAEGLQ 293 (299)
T ss_pred CCccccccchhHHHHHHHHhcCCcceeeecCC-CCchh-----HhHHHHHHHHH
Confidence 33334444432 2 233333334577889986 88532 34444555544
No 253
>PRK11269 glyoxylate carboligase; Provisional
Probab=25.18 E-value=2e+02 Score=18.72 Aligned_cols=39 Identities=8% Similarity=-0.175 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..++++.++++
T Consensus 438 r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~ 476 (591)
T PRK11269 438 RNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNNAYL 476 (591)
T ss_pred CcEEEEEccchhhcCHHHHHHHHHhCCCeEEEEEeCCch
Confidence 478889999887665544333444443566666766544
No 254
>PRK06154 hypothetical protein; Provisional
Probab=25.07 E-value=2e+02 Score=18.67 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..++++.+++
T Consensus 450 r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN~~ 487 (565)
T PRK06154 450 ALVINLWGDAAFGMTGMDFETAVRERIPILTILLNNFS 487 (565)
T ss_pred CcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEECCc
Confidence 46777888877666544333333333334444444443
No 255
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=25.02 E-value=2e+02 Score=18.59 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 440 ~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~y 478 (572)
T PRK06456 440 KVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRTL 478 (572)
T ss_pred CeEEEEEccchHhcchHHHHHHHHhCCCeEEEEEECCch
Confidence 367777888776665443333333333455555655443
No 256
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=24.68 E-value=1.4e+02 Score=16.54 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=23.0
Q ss_pred HHhhC-CCcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 24 LHCEL-PNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 24 ~~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
+++.+ |...+.++ |+|.. .+|+++...+++|+....
T Consensus 104 lF~tlePkidlLIv-G~Gd~---~~p~~v~~~V~~F~k~~k 140 (196)
T KOG3363|consen 104 LFQTLEPKIDLLIV-GCGDK---KHPDKVRPSVRQFVKSHK 140 (196)
T ss_pred HhhhcCCCccEEEE-ecCCc---CCchhcCHHHHHHHHHhC
Confidence 34444 45566655 77776 456677778888887654
No 257
>PRK07586 hypothetical protein; Validated
Probab=24.50 E-value=1.8e+02 Score=18.43 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 404 r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN~~ 441 (514)
T PRK07586 404 RKVLALQGDGSAMYTIQALWTQARENLDVTTVIFANRA 441 (514)
T ss_pred CeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEEeCch
Confidence 46788888887655433322223332345555555544
No 258
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=24.48 E-value=2.1e+02 Score=18.74 Aligned_cols=38 Identities=11% Similarity=-0.015 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.+++.+.|++.-........-..+.--+..++++.+++
T Consensus 466 ~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN~~ 503 (612)
T PRK07789 466 KEVWAIDGDGCFQMTNQELATCAIEGIPIKVALINNGN 503 (612)
T ss_pred CcEEEEEcchhhhccHHHHHHHHHcCCCeEEEEEECCc
Confidence 46777777777665543322222222224444454443
No 259
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.35 E-value=1.6e+02 Score=17.39 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCcccC--HHHHHHHHhhCCCcEEEEeCC
Q 037210 3 QKTLIIWGEDDQIIS--SKLAVRLHCELPNAIIRQIPD 38 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~--~~~~~~~~~~~~~~~~~~~~~ 38 (73)
.+++.+.|+++.+.- .+...... ..-++.++++++
T Consensus 79 ~~VVai~GDG~~~~iG~~eL~tA~r-~nl~i~~IV~NN 115 (280)
T PRK11869 79 LTVIAEGGDGDMYAEGGNHLIHAIR-RNPDITVLVHNN 115 (280)
T ss_pred CcEEEEECchHHhhCcHHHHHHHHH-hCcCcEEEEEEC
Confidence 578999999996532 33333333 333455555544
No 260
>PRK05858 hypothetical protein; Provisional
Probab=24.35 E-value=2e+02 Score=18.45 Aligned_cols=40 Identities=8% Similarity=-0.172 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCcc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHL 42 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 42 (73)
.|++.+.|++.-........-..+.--+..++++.+++..
T Consensus 426 r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~ 465 (542)
T PRK05858 426 RQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWG 465 (542)
T ss_pred CcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCCchh
Confidence 4677777777765554333333333223555556554443
No 261
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=24.28 E-value=2e+02 Score=18.40 Aligned_cols=39 Identities=18% Similarity=0.021 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++.+.|++.-........-..+.--+..+.++.+++.
T Consensus 427 ~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~y 465 (539)
T TIGR02418 427 TKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDNGY 465 (539)
T ss_pred CcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECCcc
Confidence 467888888877665443333333333455566666543
No 262
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=24.18 E-value=1.2e+02 Score=18.82 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=17.0
Q ss_pred CccEEEEEcCCCcccCHHHHHHHHh
Q 037210 2 KQKTLIIWGEDDQIISSKLAVRLHC 26 (73)
Q Consensus 2 ~~p~l~i~g~~d~~~~~~~~~~~~~ 26 (73)
.+|++++.|+.|..........+.+
T Consensus 74 ~~~v~~I~GNHD~~~~l~~~~~~l~ 98 (407)
T PRK10966 74 GCQLVVLAGNHDSVATLNESRDLLA 98 (407)
T ss_pred CCcEEEEcCCCCChhhhhhHHHHHH
Confidence 4789999999997665444444433
No 263
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=24.13 E-value=37 Score=21.45 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCcccCHH-HHHHHHhhC---CCcEEEEeCCCCccCCc
Q 037210 3 QKTLIIWGEDDQIISSK-LAVRLHCEL---PNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~-~~~~~~~~~---~~~~~~~~~~~~H~~~~ 45 (73)
.|.++-.|..+.+-..+ ..+.+.... |.+...--.|+|||+=+
T Consensus 138 GPSiMpGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKm 184 (473)
T COG0362 138 GPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKM 184 (473)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeee
Confidence 35555555554332222 233333333 34667777899998743
No 264
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=24.12 E-value=2.1e+02 Score=18.53 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 442 ~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN~~ 479 (569)
T PRK09259 442 KPVVAIEGDSAFGFSGMEVETICRYNLPVTVVIFNNGG 479 (569)
T ss_pred CcEEEEecCccccccHHHHHHHHHcCCCEEEEEEeChh
Confidence 46777777777666544333333333345555565554
No 265
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=24.10 E-value=2.1e+02 Score=18.46 Aligned_cols=38 Identities=8% Similarity=-0.035 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 435 ~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN~~ 472 (554)
T TIGR03254 435 KPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNNGG 472 (554)
T ss_pred CcEEEEEcCchhcccHHHHHHHHHcCCCEEEEEEeChh
Confidence 47888888888776654433444443345566666654
No 266
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=23.86 E-value=2.2e+02 Score=18.68 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=38.7
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCCCcEEE---------EeCCCCccCCccChHHHHHHHHHHHhh
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIR---------QIPDCGHLPHVEKPGAVAKLIVEFIQE 61 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~---------~~~~~~H~~~~~~~~~~~~~~~~~~~~ 61 (73)
.|+++.|-.-++...+.+..+.+.+..+-+. +-.|+|...+-++-..+..+-..|+.-
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEE
Confidence 4677777766666656655556566554333 335778888888888888888888643
No 267
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=23.75 E-value=77 Score=20.67 Aligned_cols=16 Identities=50% Similarity=0.713 Sum_probs=13.5
Q ss_pred cChHHHHHHHHHHHhh
Q 037210 46 EKPGAVAKLIVEFIQE 61 (73)
Q Consensus 46 ~~~~~~~~~~~~~~~~ 61 (73)
++|+.++.+++.|+.+
T Consensus 538 ~~Pee~A~llr~Wl~e 553 (555)
T TIGR00206 538 EKPEDVAKLIRTWLLK 553 (555)
T ss_pred hCHHHHHHHHHHHhhc
Confidence 6888999999998865
No 268
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.70 E-value=1.1e+02 Score=18.39 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.+++++.|........+.++.+--.....++..|++|-
T Consensus 5 ~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE 42 (319)
T PRK04923 5 RNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGE 42 (319)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCC
Confidence 35677777766545444444432222234445555543
No 269
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.56 E-value=68 Score=18.31 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.6
Q ss_pred ccEEEEEcCCCcccC
Q 037210 3 QKTLIIWGEDDQIIS 17 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~ 17 (73)
+|++++.|+.|....
T Consensus 76 i~v~~i~GNHD~~~~ 90 (253)
T TIGR00619 76 IPIVVISGNHDSAQR 90 (253)
T ss_pred ceEEEEccCCCChhh
Confidence 799999999997643
No 270
>PLN02606 palmitoyl-protein thioesterase
Probab=23.24 E-value=1.9e+02 Score=17.58 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=24.0
Q ss_pred CcEEEEeCCCCccCCccChHHHHHHHHHHHhhcC
Q 037210 30 NAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQENC 63 (73)
Q Consensus 30 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
...+..++| .|+-. ..+.+.+.+..|+.+..
T Consensus 267 kl~f~~v~G-~Hl~~--~~~~~~~~i~pyL~~~~ 297 (306)
T PLN02606 267 KVKFISVPG-GHIEI--AEEDLVKYVVPYLQNES 297 (306)
T ss_pred CeEEEecCC-chhee--cHHHHHHHHHHHhccCC
Confidence 467888886 89855 66788899999997543
No 271
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.05 E-value=2.3e+02 Score=18.62 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=18.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.+++.+.|++.-........-..+.--++.++++.+++
T Consensus 453 r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpvi~vV~NN~~ 490 (616)
T PRK07418 453 EEVICIAGDASFLMNIQELGTLAQYGINVKTVIINNGW 490 (616)
T ss_pred CcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEECCc
Confidence 35666777766555433222223333344445555543
No 272
>PRK08266 hypothetical protein; Provisional
Probab=22.64 E-value=2.2e+02 Score=18.23 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.|++++.|++.-........-..+.--+..+.++.++++
T Consensus 421 ~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y 459 (542)
T PRK08266 421 RPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFNNNAY 459 (542)
T ss_pred CcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 468888888876665433222233222455555666543
No 273
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=22.62 E-value=63 Score=16.24 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=5.4
Q ss_pred EEEEcCCCcccC
Q 037210 6 LIIWGEDDQIIS 17 (73)
Q Consensus 6 l~i~g~~d~~~~ 17 (73)
.++.|..+....
T Consensus 2 ~I~~g~~~~~La 13 (116)
T PF13793_consen 2 VIFSGSSSQDLA 13 (116)
T ss_dssp EEEESSSGHHHH
T ss_pred EEEECCCCHHHH
Confidence 345555544333
No 274
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=22.60 E-value=1.7e+02 Score=16.90 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=10.1
Q ss_pred ccEEEEEcCCCc
Q 037210 3 QKTLIIWGEDDQ 14 (73)
Q Consensus 3 ~p~l~i~g~~d~ 14 (73)
.|++.+.|+.|.
T Consensus 85 ~pv~~VpGNHDi 96 (257)
T cd08163 85 KMVESLPGNHDI 96 (257)
T ss_pred ceEEEeCCCccc
Confidence 578899999985
No 275
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=22.39 E-value=71 Score=19.29 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=18.3
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhC
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCEL 28 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~ 28 (73)
.|++.|++|+....+....+.+.+
T Consensus 56 ~L~i~G~GDP~L~~~~L~~la~~l 79 (345)
T TIGR00666 56 NLVLRFGGDPTLKRQDIRNLVATL 79 (345)
T ss_pred cEEEEeecCCCcCHHHHHHHHHHH
Confidence 578899999999877666665553
No 276
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=22.02 E-value=2.3e+02 Score=18.33 Aligned_cols=38 Identities=5% Similarity=-0.026 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-........-..+.--+..+.++.+++
T Consensus 443 ~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~ 480 (571)
T PRK07710 443 ETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEA 480 (571)
T ss_pred CcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECch
Confidence 46788888887665533333233333345555565543
No 277
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=21.99 E-value=78 Score=16.84 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=17.2
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCccCCc
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGHLPHV 45 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 45 (73)
-+++.|++.--+ +.+..+.+.+ ..+.-++++.|...+
T Consensus 100 ~i~vVGEnk~GI--kSa~K~L~~~--~~~~KiDSARhC~Ly 136 (155)
T PF08468_consen 100 EIFVVGENKGGI--KSAEKQLAPY--GKINKIDSARHCSLY 136 (155)
T ss_dssp EEEEEEEGGGTG--GGHHHHHTTT--S--EEE---TTEEEE
T ss_pred EEEEEecCcccH--HHHHHHHHhh--CCcceeecccccEEE
Confidence 356677776444 3333333333 345677888887543
No 278
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=21.68 E-value=2e+02 Score=17.52 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=36.3
Q ss_pred EcCCCcccCH---HHHHHHHhhCCCcEEEEeCCCCccCCccChHHHHHHHHHHHhhc
Q 037210 9 WGEDDQIISS---KLAVRLHCELPNAIIRQIPDCGHLPHVEKPGAVAKLIVEFIQEN 62 (73)
Q Consensus 9 ~g~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 62 (73)
+.++|.++-. ++.-.++.-.....+..+|+.||--..-.|+...+.|.+--++.
T Consensus 97 ~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~ 153 (382)
T COG1103 97 CKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEG 153 (382)
T ss_pred ccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhcc
Confidence 3445555432 23334444445678889999999888889999999887765553
No 279
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=21.48 E-value=78 Score=18.50 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=9.8
Q ss_pred CCccEEEEEcCCCccc
Q 037210 1 VKQKTLIIWGEDDQII 16 (73)
Q Consensus 1 i~~p~l~i~g~~d~~~ 16 (73)
+.+|++++-|..|.-.
T Consensus 88 ~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 88 LGVPVFVVPGNMDAPE 103 (255)
T ss_dssp C-SEEEEE--TTS-SH
T ss_pred cCCcEEEecCCCCchH
Confidence 4689999999999633
No 280
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.41 E-value=2.4e+02 Score=18.29 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=9.9
Q ss_pred ccEEEEEcCCCcccCH
Q 037210 3 QKTLIIWGEDDQIISS 18 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~ 18 (73)
.|++.+.|++.-....
T Consensus 449 ~~Vv~i~GDG~f~m~~ 464 (579)
T TIGR03457 449 RPVVAYAGDGAWGMSM 464 (579)
T ss_pred CcEEEEEcchHHhccH
Confidence 3567777777655543
No 281
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=21.39 E-value=94 Score=17.56 Aligned_cols=14 Identities=14% Similarity=0.397 Sum_probs=11.7
Q ss_pred CCccEEEEEcCCCc
Q 037210 1 VKQKTLIIWGEDDQ 14 (73)
Q Consensus 1 i~~p~l~i~g~~d~ 14 (73)
++.|+.++.|-+|-
T Consensus 75 ~~~PVIfiTGhgDI 88 (202)
T COG4566 75 IRLPVIFLTGHGDI 88 (202)
T ss_pred CCCCEEEEeCCCCh
Confidence 46799999999993
No 282
>PRK15450 signal transduction protein PmrD; Provisional
Probab=21.32 E-value=1.2e+02 Score=14.56 Aligned_cols=31 Identities=6% Similarity=-0.019 Sum_probs=17.9
Q ss_pred CCcccCHHHHHHHHhhCCCcEEEEeCCCCccC
Q 037210 12 DDQIISSKLAVRLHCELPNAIIRQIPDCGHLP 43 (73)
Q Consensus 12 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 43 (73)
+|.+.|...++......+.-.+-++ ++.|+.
T Consensus 43 gDlLsPL~dA~YciNr~~~~t~Kii-~As~Ys 73 (85)
T PRK15450 43 GDLLSPLQNALYCINREKLQTLKIL-SASCYS 73 (85)
T ss_pred ccccccchhhhhhhcCCCCceEEEE-eccccC
Confidence 4556666665555555555555555 467774
No 283
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=21.29 E-value=80 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.1
Q ss_pred EEEEEcCCCcccCHHHHHHHHhhC
Q 037210 5 TLIIWGEDDQIISSKLAVRLHCEL 28 (73)
Q Consensus 5 ~l~i~g~~d~~~~~~~~~~~~~~~ 28 (73)
-|++.|++|+....+....+.+.+
T Consensus 100 dL~i~G~GDPtL~~~~L~~la~~l 123 (477)
T PRK11113 100 DLIARFGGDPTLTRQDLRNMVATL 123 (477)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHH
Confidence 478899999999876666666544
No 284
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.21 E-value=65 Score=17.94 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=23.4
Q ss_pred EEEEcCCCcccCHHHHHHHHhhCCC---cEEEEeCCCCc
Q 037210 6 LIIWGEDDQIISSKLAVRLHCELPN---AIIRQIPDCGH 41 (73)
Q Consensus 6 l~i~g~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~H 41 (73)
++++.+.|..+|.++.+.-...+++ ++++.|.-+-|
T Consensus 153 vLiyTdkD~~vP~~W~eS~~~~I~n~e~VqlrsFsT~~H 191 (203)
T KOG3285|consen 153 VLIYTDKDTEVPEKWDESGPKLIQNPEAVQLRSFSTSIH 191 (203)
T ss_pred EEEEeCCCccCCcchhcCCCeEecChhhEEEeeccccce
Confidence 5778899999996665554444444 45666655555
No 285
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.09 E-value=1.3e+02 Score=18.12 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=18.2
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
+..++.|........+.++.+--.....++..|++|-
T Consensus 5 ~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE 41 (320)
T PRK02269 5 DLKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGE 41 (320)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCC
Confidence 4567777766544444444432222234455555543
No 286
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=20.99 E-value=2.5e+02 Score=18.16 Aligned_cols=38 Identities=5% Similarity=-0.059 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.|++.+.|++.-...........+.--+..++++.+++
T Consensus 434 ~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv~nN~~ 471 (557)
T PRK08199 434 RTVVAFAGDGCFLMNGQELATAVQYGLPIIVIVVNNGM 471 (557)
T ss_pred CcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 46778888877655433322222222345555555544
No 287
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=20.90 E-value=74 Score=15.10 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=8.4
Q ss_pred CccEEEEEcCCCc
Q 037210 2 KQKTLIIWGEDDQ 14 (73)
Q Consensus 2 ~~p~l~i~g~~d~ 14 (73)
.+|+.++.+..|+
T Consensus 76 ~G~~~~if~~~d~ 88 (100)
T PF00466_consen 76 KGPTALIFSNEDP 88 (100)
T ss_dssp SSSEEEEEESSSH
T ss_pred cCCEEEEEECCCH
Confidence 4677777776553
No 288
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=20.88 E-value=2.3e+02 Score=17.73 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEcCCCcccCHHHHHHHHhhC----CCcEEEEeCCCCcc
Q 037210 4 KTLIIWGEDDQIISSKLAVRLHCEL----PNAIIRQIPDCGHL 42 (73)
Q Consensus 4 p~l~i~g~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~ 42 (73)
++++-+|..|.... ...+.+.+.+ -+.++..++| ||-
T Consensus 351 r~~i~~G~~E~~~~-~~~~~l~~~L~~~G~~~~~~~~~G-GHd 391 (411)
T PRK10439 351 RIVLEAGRREPMIM-RANQALYAQLHPAGHSVFWRQVDG-GHD 391 (411)
T ss_pred eEEEeCCCCCchHH-HHHHHHHHHHHHCCCcEEEEECCC-CcC
Confidence 45555777764432 2233333333 2467888875 784
No 289
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.85 E-value=2.5e+02 Score=18.23 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=8.6
Q ss_pred cEEEEEcCCCcccCH
Q 037210 4 KTLIIWGEDDQIISS 18 (73)
Q Consensus 4 p~l~i~g~~d~~~~~ 18 (73)
+++.+.|++.-....
T Consensus 441 ~vv~i~GDG~f~m~~ 455 (572)
T PRK08979 441 TVVCVTGDGSIQMNI 455 (572)
T ss_pred eEEEEEcchHhhccH
Confidence 456666666555543
No 290
>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins. S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code.
Probab=20.73 E-value=90 Score=15.40 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=10.6
Q ss_pred EEEEeCCCCccCCc
Q 037210 32 IIRQIPDCGHLPHV 45 (73)
Q Consensus 32 ~~~~~~~~~H~~~~ 45 (73)
-...+||-||+++.
T Consensus 48 v~ayIPg~Gh~lqe 61 (95)
T cd00319 48 VTAYIPGEGHNLQE 61 (95)
T ss_pred EEEECCCCCccccc
Confidence 35678999998764
No 291
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=20.61 E-value=1.2e+02 Score=18.73 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=21.1
Q ss_pred CcEEEEeCCCCccCCccC-hHHHHHHHHHHHhhc
Q 037210 30 NAIIRQIPDCGHLPHVEK-PGAVAKLIVEFIQEN 62 (73)
Q Consensus 30 ~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~~~~~ 62 (73)
...+.++|||........ -..-...|++|+...
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~G 82 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENG 82 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcC
Confidence 456788998665544332 223477888998773
No 292
>PF00164 Ribosom_S12_S23: Ribosomal protein S12/S23; InterPro: IPR006032 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S12 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S12 is known to be involved in the translation initiation step. It is a very basic protein of 120 to 150 amino-acid residues. S12 belongs to a family of ribosomal proteins which are grouped on the basis of sequence similarities. This protein is known typically as S12 in bacteria, S23 in eukaryotes and as either S12 or S23 in the Archaea []. Bacterial S12 molecules contain a conserved aspartic acid residue which undergoes a novel post-translational modification, beta-methylthiolation, to form the corresponding 3-methylthioaspartic acid.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_l 3BBN_L 3PYU_L 3D5A_L 3MS0_L 3MR8_L 3F1G_L 2OW8_m 3PYS_L 2QNH_m ....
Probab=20.59 E-value=96 Score=16.04 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=9.1
Q ss_pred EEEeCCCCccCCc
Q 037210 33 IRQIPDCGHLPHV 45 (73)
Q Consensus 33 ~~~~~~~~H~~~~ 45 (73)
...+||-||+++.
T Consensus 63 ~AyIPg~Ghnlqe 75 (122)
T PF00164_consen 63 TAYIPGEGHNLQE 75 (122)
T ss_dssp EEEC-SSSCCSTT
T ss_pred EEEecCCcccccc
Confidence 4678999998764
No 293
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.52 E-value=1.4e+02 Score=18.06 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=19.2
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCCc
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCGH 41 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~H 41 (73)
.+++++.|..+.....+.++.+--.....++..||+|-.
T Consensus 8 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~ 46 (323)
T PRK02458 8 KQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEI 46 (323)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCE
Confidence 356777777664444333333321122345555555443
No 294
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.45 E-value=2.6e+02 Score=18.31 Aligned_cols=38 Identities=8% Similarity=-0.168 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCcccCHHHHHHHHhhCCCcEEEEeCCCC
Q 037210 3 QKTLIIWGEDDQIISSKLAVRLHCELPNAIIRQIPDCG 40 (73)
Q Consensus 3 ~p~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (73)
.+++.+.|++.-........-..+.--+..++++.+++
T Consensus 449 r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~ 486 (595)
T PRK09107 449 ALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQY 486 (595)
T ss_pred CeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 35677777776665543333333333334555555543
No 295
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=20.42 E-value=55 Score=16.84 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=19.1
Q ss_pred ccCC--ccChHHHHHHHHHHHhhcCC
Q 037210 41 HLPH--VEKPGAVAKLIVEFIQENCI 64 (73)
Q Consensus 41 H~~~--~~~~~~~~~~~~~~~~~~~~ 64 (73)
|++. .-.++..++.|..|+++...
T Consensus 101 H~Fqc~ev~a~~~~~~I~~~v~~~~~ 126 (131)
T PF08416_consen 101 HLFQCEEVDAEQPAEDIVSAVSKVKS 126 (131)
T ss_dssp EEEEETCTCTTSHHHHHHHHHHHHCC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhc
Confidence 7777 66888999999999977643
Done!