Query 037212
Match_columns 551
No_of_seqs 198 out of 465
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 2.4E-83 5.2E-88 649.3 -2.0 317 37-353 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 2.6E-35 5.6E-40 302.0 25.8 431 37-541 3-499 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.3 3.7E-11 7.9E-16 131.8 17.2 311 88-433 43-391 (486)
4 PF11790 Glyco_hydro_cc: Glyco 98.7 1.3E-07 2.7E-12 94.4 11.4 105 198-330 63-176 (239)
5 PF00150 Cellulase: Cellulase 98.4 5.2E-06 1.1E-10 83.8 15.4 218 86-334 22-251 (281)
6 PF02055 Glyco_hydro_30: O-Gly 98.4 2.7E-05 5.9E-10 85.3 20.6 233 186-443 206-472 (496)
7 smart00813 Alpha-L-AF_C Alpha- 98.2 1.1E-05 2.4E-10 77.5 11.1 65 381-445 64-137 (189)
8 PF12891 Glyco_hydro_44: Glyco 98.1 1E-05 2.2E-10 79.4 8.1 93 185-281 104-237 (239)
9 PF07745 Glyco_hydro_53: Glyco 98.0 0.00012 2.7E-09 76.0 14.4 200 84-331 23-241 (332)
10 COG5520 O-Glycosyl hydrolase [ 97.8 0.0013 2.8E-08 67.4 17.8 213 189-436 157-375 (433)
11 PF12876 Cellulase-like: Sugar 97.8 6.3E-05 1.4E-09 63.1 6.3 73 199-279 9-88 (88)
12 PF06964 Alpha-L-AF_C: Alpha-L 97.7 0.00078 1.7E-08 64.0 14.3 58 380-445 68-125 (177)
13 smart00633 Glyco_10 Glycosyl h 97.1 0.042 9E-07 55.3 18.1 211 140-389 12-253 (254)
14 PF14587 Glyco_hydr_30_2: O-Gl 96.6 0.2 4.3E-06 53.0 18.6 168 144-331 106-312 (384)
15 COG3867 Arabinogalactan endo-1 96.4 0.46 1E-05 48.2 18.8 211 85-331 63-287 (403)
16 PRK10150 beta-D-glucuronidase; 96.1 0.26 5.6E-06 56.0 18.1 67 200-281 408-474 (604)
17 COG3664 XynB Beta-xylosidase [ 95.9 0.058 1.3E-06 56.8 10.5 182 201-403 105-300 (428)
18 PF02836 Glyco_hydro_2_C: Glyc 95.5 0.44 9.4E-06 49.0 15.3 82 147-241 62-151 (298)
19 PF00332 Glyco_hydro_17: Glyco 90.7 0.91 2E-05 47.2 8.1 195 86-334 14-242 (310)
20 COG5309 Exo-beta-1,3-glucanase 84.6 19 0.00041 36.4 12.5 78 147-238 90-168 (305)
21 PF00331 Glyco_hydro_10: Glyco 83.0 41 0.00088 35.0 15.2 221 141-391 56-317 (320)
22 TIGR03356 BGL beta-galactosida 79.7 3.9 8.4E-05 44.5 6.4 101 89-212 58-164 (427)
23 PF03198 Glyco_hydro_72: Gluca 73.2 1.2E+02 0.0026 31.5 15.2 226 38-329 9-248 (314)
24 PF14488 DUF4434: Domain of un 72.0 43 0.00093 31.4 10.4 94 144-251 65-161 (166)
25 PF02449 Glyco_hydro_42: Beta- 69.9 36 0.00079 36.1 10.6 56 90-167 15-70 (374)
26 PRK09525 lacZ beta-D-galactosi 69.1 89 0.0019 38.0 14.7 82 147-241 397-482 (1027)
27 KOG2566 Beta-glucocerebrosidas 64.4 2.1E+02 0.0045 30.7 16.8 61 381-443 432-494 (518)
28 PF02449 Glyco_hydro_42: Beta- 61.9 29 0.00062 36.8 8.0 77 310-391 279-365 (374)
29 PF02057 Glyco_hydro_59: Glyco 58.9 1.1E+02 0.0024 35.0 12.0 181 195-429 168-368 (669)
30 PRK09852 cryptic 6-phospho-bet 46.9 44 0.00095 36.9 6.5 102 91-212 77-183 (474)
31 PRK15014 6-phospho-beta-glucos 45.9 51 0.0011 36.4 6.8 103 90-212 74-181 (477)
32 smart00632 Aamy_C Aamy_C domai 44.9 1.4E+02 0.003 24.1 7.7 26 414-443 10-35 (81)
33 KOG0564 5,10-methylenetetrahyd 42.9 83 0.0018 34.6 7.4 156 52-235 13-178 (590)
34 COG3250 LacZ Beta-galactosidas 42.3 75 0.0016 37.5 7.7 58 147-211 347-408 (808)
35 PRK13511 6-phospho-beta-galact 40.4 61 0.0013 35.7 6.3 99 91-212 60-163 (469)
36 PLN02849 beta-glucosidase 40.0 58 0.0013 36.3 6.1 103 89-212 83-190 (503)
37 PF10566 Glyco_hydro_97: Glyco 39.3 68 0.0015 32.7 6.0 127 140-277 28-156 (273)
38 PF02806 Alpha-amylase_C: Alph 38.6 59 0.0013 26.8 4.7 15 526-540 79-93 (95)
39 TIGR01212 radical SAM protein, 38.3 2.3E+02 0.005 29.2 9.9 124 140-284 90-220 (302)
40 PRK09589 celA 6-phospho-beta-g 37.7 69 0.0015 35.4 6.2 102 91-212 73-179 (476)
41 PRK10340 ebgA cryptic beta-D-g 37.7 1.4E+02 0.003 36.4 9.2 82 147-241 381-469 (1021)
42 TIGR03006 pepcterm_polyde poly 37.1 4.6E+02 0.0099 26.5 12.2 103 145-270 29-134 (265)
43 PLN02814 beta-glucosidase 36.1 71 0.0015 35.6 6.0 101 91-212 83-188 (504)
44 KOG4701 Chitinase [Cell wall/m 36.1 5.7E+02 0.012 27.4 17.7 43 144-194 90-132 (568)
45 TIGR01233 lacG 6-phospho-beta- 34.5 85 0.0018 34.6 6.3 99 91-212 59-162 (467)
46 PRK09593 arb 6-phospho-beta-gl 33.7 98 0.0021 34.2 6.6 102 91-212 79-185 (478)
47 PLN02998 beta-glucosidase 31.2 88 0.0019 34.8 5.7 102 90-212 87-193 (497)
48 PF13204 DUF4038: Protein of u 30.5 5.3E+02 0.011 26.3 11.0 91 140-241 81-179 (289)
49 PF00232 Glyco_hydro_1: Glycos 30.0 59 0.0013 35.6 4.1 98 91-212 64-169 (455)
50 cd02871 GH18_chitinase_D-like 28.3 6.7E+02 0.015 25.8 11.7 24 142-165 58-81 (312)
51 PRK10984 DNA-binding transcrip 27.0 62 0.0013 28.9 2.9 31 84-115 6-36 (127)
52 COG2730 BglC Endoglucanase [Ca 24.7 4.9E+02 0.011 28.0 10.0 108 88-212 76-193 (407)
53 cd06543 GH18_PF-ChiA-like PF-C 23.6 73 0.0016 32.8 3.2 46 154-209 219-265 (294)
54 PF01522 Polysacc_deac_1: Poly 23.6 3.6E+02 0.0077 22.8 7.3 78 143-240 17-94 (123)
55 PF07417 Crl: Transcriptional 22.2 52 0.0011 29.3 1.5 30 85-115 5-34 (125)
56 COG4130 Predicted sugar epimer 22.2 7.8E+02 0.017 24.4 13.7 106 147-269 52-165 (272)
57 COG2723 BglB Beta-glucosidase/ 21.9 2.5E+02 0.0054 30.9 6.9 105 88-212 62-171 (460)
58 PF14488 DUF4434: Domain of un 21.7 2.9E+02 0.0062 25.9 6.6 65 140-207 16-86 (166)
59 PF04551 GcpE: GcpE protein; 21.4 2.1E+02 0.0045 30.3 6.0 63 82-169 80-143 (359)
60 PF03556 Cullin_binding: Culli 20.1 1.6E+02 0.0034 26.0 4.2 42 140-195 76-117 (117)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=2.4e-83 Score=649.33 Aligned_cols=317 Identities=55% Similarity=1.055 Sum_probs=156.6
Q ss_pred eEEEEEcCCCcccccCCceeEeeecccCCCCCCCCCccCCccccCCCCCCCHHHHHHHHHcCCCeEecCCccceeeEeec
Q 037212 37 EGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYES 116 (551)
Q Consensus 37 ~~~v~i~~~~~~~~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~~ 116 (551)
.++|.|+...+++++|++|+|+|+||||++||+|++|+||++||+|+||+|++|++++|+|+|.+||+||+.||+++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHh
Q 037212 117 KGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVN 196 (551)
Q Consensus 117 ~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~ 196 (551)
+...++|.|+.++++.+|||+++|+|+++||++++|++++|+++|||||++.|+....++.+.++||++||+++++|+.+
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~s 161 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTAS 161 (319)
T ss_dssp ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEES
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 98888999998888999999999999999999999999999999999999998754444456689999999999999999
Q ss_pred cCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCCCC-cCeEE
Q 037212 197 KGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNS-LQVVT 275 (551)
Q Consensus 197 ~g~~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~-id~vs 275 (551)
+||+|++|||||||++++++.+++++|||+|+++||++|+++|++..++|+++||+++++.+|+++||++.++. ||+||
T Consensus 162 kgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~vT 241 (319)
T PF03662_consen 162 KGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAVT 241 (319)
T ss_dssp S-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEEE
T ss_pred cCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEEE
Confidence 99999999999999998889999999999999999999999998877899999999988999999999999985 99999
Q ss_pred EEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHHH
Q 037212 276 HHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLG 353 (551)
Q Consensus 276 ~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~~~G~~~vSdtf~aalw~lD~Lg 353 (551)
||+|++++|+|+++++++++|++||++..+++.+++++++++|++++|||||++||+||+++|||||+++|||||+||
T Consensus 242 ~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 242 WHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 999999888888889999999999999999999999999999999999999999999999999999999999999997
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=301.99 Aligned_cols=431 Identities=14% Similarity=0.161 Sum_probs=294.1
Q ss_pred eEEEEEcCCCcccccCCceeEeeecccCCCCCCCCCccCCccccCCCCCCCHHHHHHHHHcCCCeEec-CCccceeeEee
Q 037212 37 EGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRM-GGTLQDKAVYE 115 (551)
Q Consensus 37 ~~~v~i~~~~~~~~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~L~~l~k~L~p~~LRi-GG~~~D~~~y~ 115 (551)
.++++|+++..++.||.+++|+++|+ .++|.|.++.-+.+.+++.+--...++.++|.|.+|+||+ |||+.|.|+|.
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~EH--lGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIEH--LGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHHh--hccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccc
Confidence 36788999999999999999999996 5799999986576667777755577999999999999995 99999999999
Q ss_pred cCCCCCCCCCccc------CCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHH
Q 037212 116 SKGIDEPCTPFVK------NNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAES 189 (551)
Q Consensus 116 ~~~~~~~~~p~~~------~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~ 189 (551)
++.++...+|.+. .+++.||+ +||++||+.+|+++++.+|++++ ...+|++
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iGaep~~avN~Gsr-------------gvd~ar~ 137 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIGAEPYIAVNLGSR-------------GVDEARN 137 (501)
T ss_pred cCcCchhhCchhhcccccccccccccH----------HHHHHHHHHhCCceEEEEecCCc-------------cHHHHHH
Confidence 9999887787544 37888886 99999999999999999999886 4789999
Q ss_pred HHHHHH----------------hcCCcceeeeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccC
Q 037212 190 LMRYTV----------------NKGYKIYGWELGNELSG-NGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPG 252 (551)
Q Consensus 190 ~l~y~~----------------~~g~~i~~wElGNEp~~-~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~ 252 (551)
|++||. +++++|++|.||||.|| +++|. .++.+|++-..+++++++=+.|.+ +..+.|.+
T Consensus 138 ~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~-~~a~EY~~~A~e~~k~~k~~d~t~--e~~v~g~a 214 (501)
T COG3534 138 WVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGH-KTAPEYGRLANEYRKYMKYFDPTI--ENVVCGSA 214 (501)
T ss_pred HHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccc-ccCHHHHHHHHHHHHHHhhcCccc--cceEEeec
Confidence 999985 25889999999999998 45654 667788888888888888777765 23444433
Q ss_pred C---CCChhhHHHHHhhCCCCcCeEEEEEeCCCCCCCh-hhhhhccCc-chhcccchhHHHHHHHHHHhCC--CCcEEEc
Q 037212 253 G---FFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDD-RLIDKILDP-SFLNSGSEPFSSLQSILRSSAT--SAVAWVG 325 (551)
Q Consensus 253 ~---~~~~~w~~~fL~~~g~~id~vs~H~Y~~~~g~~~-~~~~~~l~~-~~l~~~~~~~~~l~~~~~~~~~--~~p~wlg 325 (551)
+ ..++.|.+.+|+++.+.+|++|+|+|..+...+. .-....+.. .+++.++..... +.+++.+ ...+-++
T Consensus 215 ~~~n~~~~~W~~~vl~~~~e~vD~ISlH~Y~Gn~~~~t~ny~~~~~~~~~~i~~l~~~~d~---Vk~k~r~kk~v~l~fD 291 (501)
T COG3534 215 NGANPTDPNWEAVVLEEAYERVDYISLHYYKGNATDDTPNYWAKSLKLDRYIDDLIKKIDY---VKAKKRSKKRVGLSFD 291 (501)
T ss_pred CCCCCCchHHHHHHHHHHhhhcCeEEEEEecCccccCcHHHHHHHhhhhHHHHHHHHHHHH---HHhccccccceeEEEe
Confidence 2 2467999999999988999999999964322111 111111111 112222211111 2234433 3557889
Q ss_pred ccccccCCCC-----------CCc---chHHHHHHHHHHHHHHhhhcCCeeEEe--ecccCcccc-CcCC-CCCCcCCch
Q 037212 326 EAGGAYNSGH-----------NLV---TNAFVFSFWYLDQLGMASIYGTKTYCR--QTLIGGNYG-LLNT-NTFVPNPGY 387 (551)
Q Consensus 326 Etnsa~~~G~-----------~~v---Sdtf~aalw~lD~Lg~~A~~g~~vv~~--q~liGg~Y~-ll~~-~~~~p~P~Y 387 (551)
|||.+|..-. |+. -.+|-.|+...=.|....++.-.|.+- -.++.---. +... +.....|.|
T Consensus 292 EWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~ai~~ekgg~~~~~~~y 371 (501)
T COG3534 292 EWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLAAIMTEKGGPAWLTPIY 371 (501)
T ss_pred cccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhhheeecCCCcceeeehh
Confidence 9999886410 111 124444544444444555444333221 111100000 1111 234568999
Q ss_pred HHHHHHHHhcCCceEEeecCCC----------ceeEEEEEEeeCCCcEEEEEEeCCCCceEEEEEeeccccccCCcchhh
Q 037212 388 YSALLWHRLMGSTVLSTSLSET----------TKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVV 457 (551)
Q Consensus 388 y~~lL~~~l~G~~vl~~~~~~~----------~~v~~YA~c~~~~g~vtlllIN~~~~~~~~v~l~~~~~~~~~~~~~~~ 457 (551)
|...+++.+.....|++.++++ +.+.+-|.+....|.|++.++|.+.+++..++|.+. +-
T Consensus 372 ~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~~d~~~~~i~l~-----G~----- 441 (501)
T COG3534 372 YPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRALEDALKLNISLN-----GL----- 441 (501)
T ss_pred hhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccccccccceEEec-----cc-----
Confidence 9999999988877787766432 246666666554588999999999998777777653 20
Q ss_pred HHHHhhhhhhhhcccccccCCCceeEEEEEecCCCCcccccEEEcCeeeecCCCC-CCCCCCceec-----CC-CCceEE
Q 037212 458 QQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDLHSQTMLLNGEILAVNSSE-DFPPLEPIYV-----SE-TAPIIV 530 (551)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~Lt~~~~~l~s~~v~LNG~~l~~~~~g-~~p~l~p~~~-----~~-~~~i~l 530 (551)
...+.++-++||+++ +... ++. ..+.+.|++- .. .....+
T Consensus 442 -------------------~~a~~~~~~~lt~~~--~~a~------------Nt~d~p~~V~p~~~~~~~vs~~~l~~~~ 488 (501)
T COG3534 442 -------------------KKAKSAEHQVLTGDD--LNAT------------NTFDAPENVVPVPGKGATVSKNELTLDL 488 (501)
T ss_pred -------------------cccceeeEEEEecCc--cccc------------cCCCCCCceecccCCCccccCCceeEec
Confidence 123578888999873 2221 111 2344444433 22 356889
Q ss_pred cCceEEEEEec
Q 037212 531 APFSIVFAEIP 541 (551)
Q Consensus 531 pp~S~~F~vi~ 541 (551)
||+|+.++.|.
T Consensus 489 ~~~S~~virl~ 499 (501)
T COG3534 489 PPLSVSVIRLK 499 (501)
T ss_pred CCceEEEEEEe
Confidence 99999999874
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.32 E-value=3.7e-11 Score=131.76 Aligned_cols=311 Identities=15% Similarity=0.199 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCCCeEecCCccceee-EeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeec
Q 037212 88 PILLKAVKAFSPLKIRMGGTLQDKA-VYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNA 166 (551)
Q Consensus 88 ~~L~~l~k~L~p~~LRiGG~~~D~~-~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~ 166 (551)
..|..+.+.+|--|||+=|-..|-+ ++..... +.. ..+.-...|++++|..+.|++|++-|.+
T Consensus 43 ~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~-----------~~~-----~~Ynf~~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 43 EQLRELQEELGFRYVRFHGLFSDDMMVYSESDE-----------DGI-----PPYNFTYLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp HHHHHHHCCS--SEEEES-TTSTTTT-EEEEET-----------TEE-----EEE--HHHHHHHHHHHHCT-EEEEEE-S
T ss_pred HHHHHHHhccCceEEEEEeeccCchhhcccccc-----------CCC-----CcCChHHHHHHHHHHHHcCCEEEEEEEe
Confidence 3466666678889999988776544 3322110 000 0022356899999999999999998875
Q ss_pred CCCccccCCCC-CCCCCC-----hHH-------HHHHHHHHH-hcCC-cce--eeeeeccCCCCCCCCCCCHHHHHHHHH
Q 037212 167 LRGRIIQSDGS-ARGAWD-----SSN-------AESLMRYTV-NKGY-KIY--GWELGNELSGNGVGARIGADQYASDVD 229 (551)
Q Consensus 167 ~~~~~~~~~~~-~~~~W~-----~~~-------A~~~l~y~~-~~g~-~i~--~wElGNEp~~~~~~~~~ta~~Ya~d~~ 229 (551)
.... .+.+. ..-.|. |.. ..++++... ..|. .|. +||+.||||+......-+.++|.+-|+
T Consensus 107 ~p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~ 184 (486)
T PF01229_consen 107 MPMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYD 184 (486)
T ss_dssp B-GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHH
T ss_pred chhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHH
Confidence 3221 11000 001111 222 223333322 1221 133 679999999854333346788999999
Q ss_pred HHHHHHHhhhcCCCCCcEEEccCCC-CChhhHHHHHhh---CCCCcCeEEEEEeCCCCCCChhhhhhccCc-chhcccch
Q 037212 230 RLQSIVQNIYKGFKIKPLIIAPGGF-FDANWFKEFIDK---TPNSLQVVTHHIYNLGPGVDDRLIDKILDP-SFLNSGSE 304 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~p~~~gP~~~-~~~~w~~~fL~~---~g~~id~vs~H~Y~~~~g~~~~~~~~~l~~-~~l~~~~~ 304 (551)
..+++||++.|+ .++.||+.. ....|..+|++- .+-.+|++|+|.|+.+.+.+ ..+..... ...+....
T Consensus 185 ~~~~~iK~~~p~----~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~--~~~~~~~~~~~~~~~~~ 258 (486)
T PF01229_consen 185 ATARAIKAVDPE----LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAED--INENMYERIEDSRRLFP 258 (486)
T ss_dssp HHHHHHHHH-TT----SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE---SS-EEEEB--HHHHHH
T ss_pred HHHHHHHHhCCC----CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc--cchhHHhhhhhHHHHHH
Confidence 999999999886 489999432 234687777653 33459999999997542211 11111100 00111123
Q ss_pred hHHHHHHHHH-HhCCCCcEEEcccccccCCCCCCcchH-HHHHHHHHHHHHHhhhcCCeeEE-------------eeccc
Q 037212 305 PFSSLQSILR-SSATSAVAWVGEAGGAYNSGHNLVTNA-FVFSFWYLDQLGMASIYGTKTYC-------------RQTLI 369 (551)
Q Consensus 305 ~~~~l~~~~~-~~~~~~p~wlgEtnsa~~~G~~~vSdt-f~aalw~lD~Lg~~A~~g~~vv~-------------~q~li 369 (551)
+++.++++++ +..|.+|+.++|+|+... ....+-|+ |.+|+ .+..+.-.....++.+. ....+
T Consensus 259 ~~~~~~~~~~~e~~p~~~~~~tE~n~~~~-~~~~~~dt~~~aA~-i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf 336 (486)
T PF01229_consen 259 ELKETRPIINDEADPNLPLYITEWNASIS-PRNPQHDTCFKAAY-IAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRKPF 336 (486)
T ss_dssp HHHHHHHHHHTSSSTT--EEEEEEES-SS-TT-GGGGSHHHHHH-HHH-HHHHGGGT-SEEEES-SBS---TTSS-SSSS
T ss_pred HHHHHHHHHhhccCCCCceeecccccccC-CCcchhccccchhh-HHHHHHHhhhhhhhhhhccchhhhhhccCCCCCce
Confidence 3455545555 446789999999998663 33445555 44444 33322111111112111 11223
Q ss_pred CccccCcCCCCCCcCCchHHHHHHHHhcCCceEEeecCCCceeEEEEEEeeCCCcEEEEEEeCC
Q 037212 370 GGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLD 433 (551)
Q Consensus 370 Gg~Y~ll~~~~~~p~P~Yy~~lL~~~l~G~~vl~~~~~~~~~v~~YA~c~~~~g~vtlllIN~~ 433 (551)
.|.+||+... ..+.|.||+..|.+++ |..++... ...+. ..++++.++|++-|..
T Consensus 337 ~ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~~~---~~~~v----t~~~~~~~~il~~n~~ 391 (486)
T PF01229_consen 337 HGGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVAKG---DHYIV----TSKDDGSVQILVWNHN 391 (486)
T ss_dssp SS-S-SEECC-CEE-HHHHHHHHHTT---SEEEEEE---TTEEE----EE-TTS-EEEEEEE--
T ss_pred ecchhhhhcc-CCCchHHHHHHHHHhh-CceeEecC---CCcee----EEcCCCeEEEEEecCc
Confidence 3667888777 6789999999999998 66554432 22221 3345678999998853
No 4
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.68 E-value=1.3e-07 Score=94.43 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=76.9
Q ss_pred CCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCC-------ChhhHHHHHhhCC--
Q 037212 198 GYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFF-------DANWFKEFIDKTP-- 268 (551)
Q Consensus 198 g~~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~-------~~~w~~~fL~~~g-- 268 (551)
+...++++.-||||... ...++++++++.++++.+.++. + +.++++|.... ..+|+++|++...
T Consensus 63 ~~~~~~ll~fNEPD~~~-qsn~~p~~aa~~w~~~~~~~~~--~----~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~ 135 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG-QSNMSPEEAAALWKQYMNPLRS--P----GVKLGSPAVAFTNGGTPGGLDWLSQFLSACARG 135 (239)
T ss_pred ccCccceeeecCCCCCC-CCCCCHHHHHHHHHHHHhHhhc--C----CcEEECCeecccCCCCCCccHHHHHHHHhcccC
Confidence 56688999999999854 6789999999999998888773 3 46899998732 2479999999876
Q ss_pred CCcCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEcccccc
Q 037212 269 NSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGA 330 (551)
Q Consensus 269 ~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa 330 (551)
-.+|++++|.|. + +. . .+ .+.+..+.++++ +||||||.+-.
T Consensus 136 ~~~D~iavH~Y~---~-~~---~---------~~---~~~i~~~~~~~~--kPIWITEf~~~ 176 (239)
T PF11790_consen 136 CRVDFIAVHWYG---G-DA---D---------DF---KDYIDDLHNRYG--KPIWITEFGCW 176 (239)
T ss_pred CCccEEEEecCC---c-CH---H---------HH---HHHHHHHHHHhC--CCEEEEeeccc
Confidence 359999999992 1 11 1 11 223333444554 99999999854
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.43 E-value=5.2e-06 Score=83.77 Aligned_cols=218 Identities=18% Similarity=0.176 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEee
Q 037212 86 GNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLN 165 (551)
Q Consensus 86 ~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN 165 (551)
........++++|--.||+.=. |..-.. +. | +..++ .-...++|++++.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~--~~-~-----~~~~~----~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQE--PN-P-----GYNYD----ETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTST--TS-T-----TTSBT----HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcC--CC-C-----Ccccc----HHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3456778889999999997322 211100 00 1 11010 11235689999999999999999888
Q ss_pred cCCCccccCCCCCCCCCChHHHHHH----HHHH-Hh--cCCcceeeeeeccCCCCCCCCCC---CHHHHHHHHHHHHHHH
Q 037212 166 ALRGRIIQSDGSARGAWDSSNAESL----MRYT-VN--KGYKIYGWELGNELSGNGVGARI---GADQYASDVDRLQSIV 235 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~W~~~~A~~~----l~y~-~~--~g~~i~~wElGNEp~~~~~~~~~---ta~~Ya~d~~~~~~~~ 235 (551)
...+=. ..+ ..........++ ++.. .. ....+.+|||.|||+....+..+ ++.+|.+-+.+..++|
T Consensus 84 ~~~~w~-~~~---~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~I 159 (281)
T PF00150_consen 84 NAPGWA-NGG---DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAI 159 (281)
T ss_dssp ESTTCS-SST---STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHH
T ss_pred cCcccc-ccc---cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHH
Confidence 741100 000 011122222222 2222 22 23357799999999974332223 5678888888999999
Q ss_pred HhhhcCCCCCcEEEccCCCCChhhHHHHHhh--CCCCcCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHH
Q 037212 236 QNIYKGFKIKPLIIAPGGFFDANWFKEFIDK--TPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSIL 313 (551)
Q Consensus 236 ~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~--~g~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~ 313 (551)
+++.|+. +.+++.... .......+.+. .....+++++|.|..... ..... .............++.+...+
T Consensus 160 r~~~~~~---~i~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (281)
T PF00150_consen 160 RAADPNH---LIIVGGGGW-GADPDGAAADNPNDADNNDVYSFHFYDPYDF--SDQWN-PGNWGDASALESSFRAALNWA 232 (281)
T ss_dssp HHTTSSS---EEEEEEHHH-HTBHHHHHHHSTTTTTTSEEEEEEEETTTCH--HTTTS-TCSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcc---eeecCCCcc-ccccchhhhcCcccccCceeEEeeEeCCCCc--CCccc-cccchhhhHHHHHHHHHHHHH
Confidence 9987752 344443211 11111112221 124578999999983210 00000 000000011122333333333
Q ss_pred HHhCCCCcEEEcccccccCCC
Q 037212 314 RSSATSAVAWVGEAGGAYNSG 334 (551)
Q Consensus 314 ~~~~~~~p~wlgEtnsa~~~G 334 (551)
.+ .++|+|+||++.....+
T Consensus 233 ~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 233 KK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HH--TTSEEEEEEEESSTTTS
T ss_pred HH--cCCeEEEeCcCCcCCCC
Confidence 33 46899999999875333
No 6
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.39 E-value=2.7e-05 Score=85.30 Aligned_cols=233 Identities=14% Similarity=0.197 Sum_probs=127.4
Q ss_pred HHHHHHHHH---HhcCCcceeeeeeccCCCC-----CC-CCCCCHHHHHHHHHH-HHHHHHhhhcCCCCCcEEEccCCC-
Q 037212 186 NAESLMRYT---VNKGYKIYGWELGNELSGN-----GV-GARIGADQYASDVDR-LQSIVQNIYKGFKIKPLIIAPGGF- 254 (551)
Q Consensus 186 ~A~~~l~y~---~~~g~~i~~wElGNEp~~~-----~~-~~~~ta~~Ya~d~~~-~~~~~~~~~~~~~~~p~~~gP~~~- 254 (551)
=|.-+++|. +++|.+|.+.-+.|||+.. .. ...|++++-++=.+. |.-.|++.... .+.+|++-+-.
T Consensus 206 yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~ 283 (496)
T PF02055_consen 206 YADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCC
Confidence 366777775 4689999999999999851 12 457998876433332 67777765321 24577665421
Q ss_pred -CChhhHHHHHhh--CCCCcCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEccccccc
Q 037212 255 -FDANWFKEFIDK--TPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAY 331 (551)
Q Consensus 255 -~~~~w~~~fL~~--~g~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~ 331 (551)
..++|...+|+. +...||.+.+|.|-. ++. +. .+..+ .+.-|++.+|.||.....
T Consensus 284 ~~~~~~~~~il~d~~A~~yv~GiA~HwY~g----~~~-------~~----------~l~~~-h~~~P~k~l~~TE~~~g~ 341 (496)
T PF02055_consen 284 DNLPDYADTILNDPEAAKYVDGIAFHWYGG----DPS-------PQ----------ALDQV-HNKFPDKFLLFTEACCGS 341 (496)
T ss_dssp GGTTHHHHHHHTSHHHHTTEEEEEEEETTC----S-H-------CH----------HHHHH-HHHSTTSEEEEEEEESS-
T ss_pred cccchhhhhhhcChhhHhheeEEEEECCCC----Cch-------hh----------HHHHH-HHHCCCcEEEeeccccCC
Confidence 234788888864 234599999999952 110 01 11111 233589999999975322
Q ss_pred CCCCCCc-chHHHHHHHHHHHHHHhhhcCCeeEEeeccc----Cc-----ccc----CcCC--CCCCcCCchHHHHHHHH
Q 037212 332 NSGHNLV-TNAFVFSFWYLDQLGMASIYGTKTYCRQTLI----GG-----NYG----LLNT--NTFVPNPGYYSALLWHR 395 (551)
Q Consensus 332 ~~G~~~v-Sdtf~aalw~lD~Lg~~A~~g~~vv~~q~li----Gg-----~Y~----ll~~--~~~~p~P~Yy~~lL~~~ 395 (551)
......+ ...+..+..+...+-..-.++...++...+. || ++. .++. +.+..+|.||.+-=|.+
T Consensus 342 ~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 342 WNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHT
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhc
Confidence 1111111 1234445544443322233455444333321 22 111 1222 34567999999999999
Q ss_pred hc--CCceEEeecCCC-ceeEEEEEEeeCCCcEEEEEEeCCCCce-EEEEEe
Q 037212 396 LM--GSTVLSTSLSET-TKIRAYAHCSKQSQGTTLLLINLDGNTT-ARVRVT 443 (551)
Q Consensus 396 l~--G~~vl~~~~~~~-~~v~~YA~c~~~~g~vtlllIN~~~~~~-~~v~l~ 443 (551)
++ |...+.++.+.. ..|.+-|.-. .+|.++|+++|....+. ++|+|+
T Consensus 422 FV~PGa~RI~st~~~~~~~l~~vAF~n-PDGs~vvVv~N~~~~~~~~~v~v~ 472 (496)
T PF02055_consen 422 FVRPGAVRIGSTSSSSDSGLEAVAFLN-PDGSIVVVVLNRGDSDQNFSVTVK 472 (496)
T ss_dssp TS-TT-EEEEEEESSSTTTEEEEEEEE-TTSEEEEEEEE-SSS-EEEEEEEE
T ss_pred ccCCCCEEEEeeccCCCCceeEEEEEC-CCCCEEEEEEcCCCCccceEEEEe
Confidence 99 666666655322 2576666544 47999999999988763 235554
No 7
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=98.20 E-value=1.1e-05 Score=77.54 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=50.1
Q ss_pred CCcCCchHHHHHHHHhcCCceEEeecCCC---------ceeEEEEEEeeCCCcEEEEEEeCCCCceEEEEEeec
Q 037212 381 FVPNPGYYSALLWHRLMGSTVLSTSLSET---------TKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTIS 445 (551)
Q Consensus 381 ~~p~P~Yy~~lL~~~l~G~~vl~~~~~~~---------~~v~~YA~c~~~~g~vtlllIN~~~~~~~~v~l~~~ 445 (551)
...+|.||++.||++++|..++++.+..+ +.+.+.|.+..+.+.++|.+||.+.++++.++|.+.
T Consensus 64 ~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~ 137 (189)
T smart00813 64 AWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLR 137 (189)
T ss_pred EEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEec
Confidence 56799999999999999999999876533 456666665443457999999999886677777653
No 8
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.09 E-value=1e-05 Score=79.45 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhc------CCcceeeeeeccCCCC---C---CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccC
Q 037212 185 SNAESLMRYTVNK------GYKIYGWELGNELSGN---G---VGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPG 252 (551)
Q Consensus 185 ~~A~~~l~y~~~~------g~~i~~wElGNEp~~~---~---~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~ 252 (551)
.-..+||+|.+.+ +..|++|.|.|||+++ + .|...+.+++.+...+++++||+++|++ +++||.
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a----~v~GP~ 179 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDA----KVFGPV 179 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTS----EEEEEE
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC----eEeech
Confidence 3477888887543 6679999999999983 1 3888999999999999999999999874 899996
Q ss_pred CC---------CC------------hhhHHHHHh-------hCCCC-cCeEEEEEeCC
Q 037212 253 GF---------FD------------ANWFKEFID-------KTPNS-LQVVTHHIYNL 281 (551)
Q Consensus 253 ~~---------~~------------~~w~~~fL~-------~~g~~-id~vs~H~Y~~ 281 (551)
.. .+ ..|+.=||+ +.|.. +|++.+|+||.
T Consensus 180 ~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 180 EWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp E-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 31 11 125555664 23544 99999999985
No 9
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.99 E-value=0.00012 Score=76.02 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEE
Q 037212 84 DLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFG 163 (551)
Q Consensus 84 ~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifg 163 (551)
+-....+..++|.-|.-.||+ + +|.... + .+..+.++..++.+=+++.|.++++.
T Consensus 23 ~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~------------~------~g~~~~~~~~~~akrak~~Gm~vlld 77 (332)
T PF07745_consen 23 NGQEKDLFQILKDHGVNAVRL------R-VWVNPY------------D------GGYNDLEDVIALAKRAKAAGMKVLLD 77 (332)
T ss_dssp TSSB--HHHHHHHTT--EEEE------E-E-SS-T------------T------TTTTSHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCCHHHHHHhcCCCeEEE------E-eccCCc------------c------cccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 444567889999999877775 2 343211 0 12344556677788888899999988
Q ss_pred eecCC-----CccccCCCCCCCCCCh----HHHHHHHHHH-------HhcCCcceeeeeeccCCC---CCCCCCCCHHHH
Q 037212 164 LNALR-----GRIIQSDGSARGAWDS----SNAESLMRYT-------VNKGYKIYGWELGNELSG---NGVGARIGADQY 224 (551)
Q Consensus 164 lN~~~-----~~~~~~~~~~~~~W~~----~~A~~~l~y~-------~~~g~~i~~wElGNEp~~---~~~~~~~ta~~Y 224 (551)
+-+.. +....| .+|.. +.+.++-+|+ +..|...+.+|||||.+. +..+..-+.+++
T Consensus 78 fHYSD~WaDPg~Q~~P-----~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~ 152 (332)
T PF07745_consen 78 FHYSDFWADPGKQNKP-----AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNL 152 (332)
T ss_dssp E-SSSS--BTTB-B-------TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHH
T ss_pred ecccCCCCCCCCCCCC-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHH
Confidence 87731 222222 34543 2344445554 357889999999999875 223455677788
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCCCCcCeEEEEEeCCCCCCChhhhhhccCcchhcccch
Q 037212 225 ASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSE 304 (551)
Q Consensus 225 a~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~ 304 (551)
++-+..=.+++|++.|++....-+..|+......|+-+-|.+.+...|++.+++||.-.+ .++ .
T Consensus 153 a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-------------~l~---~ 216 (332)
T PF07745_consen 153 AKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-------------TLE---D 216 (332)
T ss_dssp HHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST--------------HH---H
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-------------hHH---H
Confidence 888888888888887764211111133211112455555666677799999999985322 121 1
Q ss_pred hHHHHHHHHHHhCCCCcEEEccccccc
Q 037212 305 PFSSLQSILRSSATSAVAWVGEAGGAY 331 (551)
Q Consensus 305 ~~~~l~~~~~~~~~~~p~wlgEtnsa~ 331 (551)
....++.+.++| +||+++.||+-.+
T Consensus 217 l~~~l~~l~~ry--~K~V~V~Et~yp~ 241 (332)
T PF07745_consen 217 LKNNLNDLASRY--GKPVMVVETGYPW 241 (332)
T ss_dssp HHHHHHHHHHHH--T-EEEEEEE---S
T ss_pred HHHHHHHHHHHh--CCeeEEEeccccc
Confidence 234455566677 6999999998654
No 10
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.0013 Score=67.40 Aligned_cols=213 Identities=12% Similarity=0.121 Sum_probs=115.1
Q ss_pred HHHHHHHhcCCcceeeeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCC-ChhhHHHHHh
Q 037212 189 SLMRYTVNKGYKIYGWELGNELSGN--GVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFF-DANWFKEFID 265 (551)
Q Consensus 189 ~~l~y~~~~g~~i~~wElGNEp~~~--~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~-~~~w~~~fL~ 265 (551)
+++.|.+..|.++++.-+=||||.- .-...|++++-.+=++++..-+. ...+++-|+.+. .++|-+..|+
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~-------~~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASIN-------AEMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhc-------cccEEecchhccccccccccccc
Confidence 4445567799999999999999973 23677999876654444433322 246888898763 3466666664
Q ss_pred hC--CCCcCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHH
Q 037212 266 KT--PNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFV 343 (551)
Q Consensus 266 ~~--g~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~~~G~~~vSdtf~ 343 (551)
.- -..||.+.+|.|... ++. -|.++ .+....+|.+|++|+-.-. ..++-.|+
T Consensus 230 Dp~a~a~~~ilg~H~Ygg~--v~~-------~p~~l-------------ak~~~~gKdlwmte~y~~e--sd~~s~dr-- 283 (433)
T COG5520 230 DPKALANMDILGTHLYGGQ--VSD-------QPYPL-------------AKQKPAGKDLWMTECYPPE--SDPNSADR-- 283 (433)
T ss_pred CHhHhcccceeEeeecccc--ccc-------chhhH-------------hhCCCcCCceEEeecccCC--CCCCcchH--
Confidence 32 234999999999521 100 01111 1122348999999964321 11112233
Q ss_pred HHHHHHHHHHHhhhcC-CeeEEeecccCccccCcCCCCCCcCCchHHHHHHHHhcCCceEEeecCCCceeEEEEEEeeCC
Q 037212 344 FSFWYLDQLGMASIYG-TKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQS 422 (551)
Q Consensus 344 aalw~lD~Lg~~A~~g-~~vv~~q~liGg~Y~ll~~~~~~p~P~Yy~~lL~~~l~G~~vl~~~~~~~~~v~~YA~c~~~~ 422 (551)
.++|...++-.+...| ...+.-..+ -.+|+..-..... .-+=|..--+..++++.-..++...+++-.+|+..-.++
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i-~~~~~~~~~~gg~-~k~~y~ma~fskf~q~gy~rldat~sp~~nvyvsayvg~ 361 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNI-RLDYGGGPNHGGN-SKRGYCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYVGP 361 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEE-eeccCCCcCCCcc-cccceeEeeeeeeccCCceEEecccCccceEEEEEEecC
Confidence 5667666666554444 333322222 1334333221000 112233334455566662333322344433444322346
Q ss_pred CcEEEEEEeCCCCc
Q 037212 423 QGTTLLLINLDGNT 436 (551)
Q Consensus 423 g~vtlllIN~~~~~ 436 (551)
++|.++.||+....
T Consensus 362 nkvvivaink~~~~ 375 (433)
T COG5520 362 NKVVIVAINKGTYP 375 (433)
T ss_pred CcEEEEeecccccc
Confidence 89999999997664
No 11
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.76 E-value=6.3e-05 Score=63.10 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=42.4
Q ss_pred CcceeeeeeccCCCC-C--C---CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCC-CCc
Q 037212 199 YKIYGWELGNELSGN-G--V---GARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTP-NSL 271 (551)
Q Consensus 199 ~~i~~wElGNEp~~~-~--~---~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g-~~i 271 (551)
.+|.+|||+||+++. . . ......+.|.+-+++..++||+++|+. |..+|-... +... ++... +.+
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~~~~-~~~~----~~~~~~~~~ 80 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGFWGG-DWED----LEQLQAENL 80 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B--S--TTH----HHHS--TT-
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeecccC-CHHH----HHHhchhcC
Confidence 458899999994442 2 1 123456888999999999999999863 444443221 1112 34444 679
Q ss_pred CeEEEEEe
Q 037212 272 QVVTHHIY 279 (551)
Q Consensus 272 d~vs~H~Y 279 (551)
|++|+|.|
T Consensus 81 DvisfH~Y 88 (88)
T PF12876_consen 81 DVISFHPY 88 (88)
T ss_dssp SSEEB-EE
T ss_pred CEEeeecC
Confidence 99999998
No 12
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=97.74 E-value=0.00078 Score=63.98 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=45.0
Q ss_pred CCCcCCchHHHHHHHHhcCCceEEeecCCCceeEEEEEEeeCCCcEEEEEEeCCCCceEEEEEeec
Q 037212 380 TFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTIS 445 (551)
Q Consensus 380 ~~~p~P~Yy~~lL~~~l~G~~vl~~~~~~~~~v~~YA~c~~~~g~vtlllIN~~~~~~~~v~l~~~ 445 (551)
...++|.||+..||+++.|..+| +.+.+-|.+..+.+.+.|.+||.+.+ .+.++|.+.
T Consensus 68 ~~~~tpsY~v~~lf~~~~g~~~l-------~~l~~~As~d~~~~~l~v~vVN~~~~-~~~v~l~l~ 125 (177)
T PF06964_consen 68 QVFGTPSYYVQKLFSNHRGDTVL-------PPLDVSASRDEDGGELYVKVVNRSSE-PQTVTLNLQ 125 (177)
T ss_dssp EEEESHHHHHHHHHHHCTTSEEE-------ESEEEEEEEETTTTEEEEEEEE-SSS-BEEEEEEET
T ss_pred CEEECchHHHHHHHHhcCCCeEe-------ccEEEEEEEECCCCEEEEEEEECCCC-CEEEEEEEc
Confidence 45679999999999999999998 45666666654445799999999887 467777663
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.07 E-value=0.042 Score=55.31 Aligned_cols=211 Identities=12% Similarity=0.081 Sum_probs=101.6
Q ss_pred ccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCCh-HHHHHHHHHHH----hcCCcceeeeeeccCCCCC
Q 037212 140 CLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDS-SNAESLMRYTV----NKGYKIYGWELGNELSGNG 214 (551)
Q Consensus 140 ~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEp~~~~ 214 (551)
.+.-+..|++++||++.|.++-... +.-.. +.++ |.....+ +....+.+|.. ..+..+..|++.|||...+
T Consensus 12 ~~n~~~~D~~~~~a~~~gi~v~gH~-l~W~~-~~P~--W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~~ 87 (254)
T smart00633 12 QFNFSGADAIVNFAKENGIKVRGHT-LVWHS-QTPD--WVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEALHDN 87 (254)
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEE-Eeecc-cCCH--hhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeecccCC
Confidence 3445677999999999999985432 11111 1221 1111112 22344566642 3455699999999997632
Q ss_pred CC---C-CC---CHHHHHHHHHHHHHHHHhhhcCCCCCcEEEc------cCCCCC--hhhHHHHHhhCCCCcCeEEEE--
Q 037212 215 VG---A-RI---GADQYASDVDRLQSIVQNIYKGFKIKPLIIA------PGGFFD--ANWFKEFIDKTPNSLQVVTHH-- 277 (551)
Q Consensus 215 ~~---~-~~---ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~g------P~~~~~--~~w~~~fL~~~g~~id~vs~H-- 277 (551)
.+ . .| -+.+|.+ ...++.++++|+.. .++. ++...+ ..+.+.+.+ .|..||.|-++
T Consensus 88 ~~~~~~~~w~~~~G~~~i~---~af~~ar~~~P~a~---l~~Ndy~~~~~~~k~~~~~~~v~~l~~-~g~~iDgiGlQ~H 160 (254)
T smart00633 88 GSGLRRSVWYQILGEDYIE---KAFRYAREADPDAK---LFYNDYNTEEPNAKRQAIYELVKKLKA-KGVPIDGIGLQSH 160 (254)
T ss_pred CcccccchHHHhcChHHHH---HHHHHHHHhCCCCE---EEEeccCCcCccHHHHHHHHHHHHHHH-CCCccceeeeeee
Confidence 10 0 11 1123433 33456677777631 2221 110000 123344443 45568988874
Q ss_pred EeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHh-CCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHHHHhh
Q 037212 278 IYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSS-ATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMAS 356 (551)
Q Consensus 278 ~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~-~~~~p~wlgEtnsa~~~G~~~vSdtf~aalw~lD~Lg~~A 356 (551)
.+. +. + + + ..+.+.+++. ..++|+|+||....... + .=..|-++-+.+-..-
T Consensus 161 ~~~---~~-~-------~---~-------~~~~~~l~~~~~~g~pi~iTE~dv~~~~-----~-~~~qA~~~~~~l~~~~ 213 (254)
T smart00633 161 LSL---GS-P-------N---I-------AEIRAALDRFASLGLEIQITELDISGYP-----N-PQAQAADYEEVFKACL 213 (254)
T ss_pred ecC---CC-C-------C---H-------HHHHHHHHHHHHcCCceEEEEeecCCCC-----c-HHHHHHHHHHHHHHHH
Confidence 321 10 0 1 1 1122222221 23899999998865421 1 1222334444444433
Q ss_pred hc-CCeeEEeecccCc-------cccCcCCCCCCcCCchHH
Q 037212 357 IY-GTKTYCRQTLIGG-------NYGLLNTNTFVPNPGYYS 389 (551)
Q Consensus 357 ~~-g~~vv~~q~liGg-------~Y~ll~~~~~~p~P~Yy~ 389 (551)
++ ++..++-.++..+ .-+|+|.+ +.|+|.|++
T Consensus 214 ~~p~v~gi~~Wg~~d~~~W~~~~~~~L~d~~-~~~kpa~~~ 253 (254)
T smart00633 214 AHPAVTGVTVWGVTDKYSWLDGGAPLLFDAN-YQPKPAYWA 253 (254)
T ss_pred cCCCeeEEEEeCCccCCcccCCCCceeECCC-CCCChhhhc
Confidence 33 2333332333211 12466666 889998864
No 14
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.56 E-value=0.2 Score=52.99 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHhcCCEEEEEeecC-------CCccccCCC---CCCCCCChHHHHHHHHHH---HhcCCcceeeeeeccC
Q 037212 144 RRWDELNIFFRRAGAVVTFGLNAL-------RGRIIQSDG---SARGAWDSSNAESLMRYT---VNKGYKIYGWELGNEL 210 (551)
Q Consensus 144 ~~wd~~~~f~~~~G~~~ifglN~~-------~~~~~~~~~---~~~~~W~~~~A~~~l~y~---~~~g~~i~~wElGNEp 210 (551)
.+| |++-|++.|++.+..+.-. +|.....+. --...|-..-|.-|++++ ++.|+++.+.+-=|||
T Consensus 106 Qrw--fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP 183 (384)
T PF14587_consen 106 QRW--FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEP 183 (384)
T ss_dssp HHH--HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-T
T ss_pred HHH--HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCC
Confidence 445 7889999999888765432 110000000 001112222355454444 5679999999999999
Q ss_pred CCC-----CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCC-----CC--------hhhHHHHHhhCCC---
Q 037212 211 SGN-----GVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGF-----FD--------ANWFKEFIDKTPN--- 269 (551)
Q Consensus 211 ~~~-----~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~-----~~--------~~w~~~fL~~~g~--- 269 (551)
+.+ +-|+.+++++-++=.+.|++.|++.-.+ .+|..++.. +. ..-+..|+...+.
T Consensus 184 ~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~----t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi 259 (384)
T PF14587_consen 184 QWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLS----TKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYI 259 (384)
T ss_dssp TS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-----EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--
T ss_pred CCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC----ceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhh
Confidence 873 1377899988888888888888876322 355555431 00 0224666654321
Q ss_pred ----C-cCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEccccccc
Q 037212 270 ----S-LQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAY 331 (551)
Q Consensus 270 ----~-id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~ 331 (551)
. -..|+-|.|... + + .+.+...-+.+.+.++++.|+.++|.+|+..-.
T Consensus 260 ~~l~~v~~~i~~HsYwt~-~--~-----------~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~ 312 (384)
T PF14587_consen 260 GDLPNVPNIISGHSYWTD-S--P-----------WDDLRDIRKQLADKLDKYSPGLKYWQTEYCILG 312 (384)
T ss_dssp TT-TTEEEEEEE--TT-S-S--S-----------HHHHHHHHHHHHHHHHTTSS--EEEE----S--
T ss_pred hccccchhheeecccccC-C--C-----------HHHHHHHHHHHHHHHHhhCcCCceeeeeeeecc
Confidence 2 358889999754 1 1 112233335567777888999999999987654
No 15
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.46 Score=48.16 Aligned_cols=211 Identities=17% Similarity=0.167 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEe
Q 037212 85 LGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGL 164 (551)
Q Consensus 85 l~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifgl 164 (551)
-..+...+.+|+-|.-++|+ -+|.+... . .+..+| -+.-.-..--++..=++..|.+++..+
T Consensus 63 g~~qD~~~iLK~~GvNyvRl-------RvwndP~d--------s-ngn~yg--gGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRL-------RVWNDPYD--------S-NGNGYG--GGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEE-------EEecCCcc--------C-CCCccC--CCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 33456677889899988885 24544211 1 111122 111111222455666777799999877
Q ss_pred ecCCCccccCCCCCCCCCChHH----HHHHHHHH-------HhcCCcceeeeeeccCCCC---CCCCCCCHHHHHHHHHH
Q 037212 165 NALRGRIIQSDGSARGAWDSSN----AESLMRYT-------VNKGYKIYGWELGNELSGN---GVGARIGADQYASDVDR 230 (551)
Q Consensus 165 N~~~~~~~~~~~~~~~~W~~~~----A~~~l~y~-------~~~g~~i~~wElGNEp~~~---~~~~~~ta~~Ya~d~~~ 230 (551)
-+..-=.+......-.+|..-+ -+++-+|+ ++.|..+.-.|+|||.++. ..|..-+-+..++-+.+
T Consensus 125 HYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~ 204 (403)
T COG3867 125 HYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNA 204 (403)
T ss_pred cchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHH
Confidence 6631100000001112342111 11233343 3568889999999999862 12333345556666666
Q ss_pred HHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCCCCcCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHH
Q 037212 231 LQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQ 310 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~ 310 (551)
-.+++|++.|++....-+.-|.......|.-+=|.+.+-..|++...+||.-.|. ++++ -..+.
T Consensus 205 g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgt----l~nL------------~~nl~ 268 (403)
T COG3867 205 GIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGT----LNNL------------TTNLN 268 (403)
T ss_pred HhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCc----HHHH------------HhHHH
Confidence 6666777666642222222333333345665556556667899999999864231 1111 12345
Q ss_pred HHHHHhCCCCcEEEccccccc
Q 037212 311 SILRSSATSAVAWVGEAGGAY 331 (551)
Q Consensus 311 ~~~~~~~~~~p~wlgEtnsa~ 331 (551)
.+.++| +|.+.+-|++-.|
T Consensus 269 dia~rY--~K~VmV~Etay~y 287 (403)
T COG3867 269 DIASRY--HKDVMVVETAYTY 287 (403)
T ss_pred HHHHHh--cCeEEEEEeccee
Confidence 566677 5889999998765
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.12 E-value=0.26 Score=55.97 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=37.9
Q ss_pred cceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCCCCcCeEEEEEe
Q 037212 200 KIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIY 279 (551)
Q Consensus 200 ~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~id~vs~H~Y 279 (551)
.|..|.+|||+... .+....-++++.+++|+.+|+ +|...+-..... ... ......+|++++|.|
T Consensus 408 SIi~Ws~gNE~~~~-------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~--~~~---~~~~~~~Dv~~~N~Y 472 (604)
T PRK10150 408 SVVMWSIANEPASR-------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFAT--PDT---DTVSDLVDVLCLNRY 472 (604)
T ss_pred eEEEEeeccCCCcc-------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCC--ccc---ccccCcccEEEEccc
Confidence 47799999998641 112233356778888888875 333322110000 000 112234899999988
Q ss_pred CC
Q 037212 280 NL 281 (551)
Q Consensus 280 ~~ 281 (551)
+.
T Consensus 473 ~~ 474 (604)
T PRK10150 473 YG 474 (604)
T ss_pred ce
Confidence 74
No 17
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.058 Score=56.80 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=99.5
Q ss_pred ceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCCCCcCeEEEEEeC
Q 037212 201 IYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYN 280 (551)
Q Consensus 201 i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~id~vs~H~Y~ 280 (551)
.--+++-|||+.. ..-.+|-+-+.. ..++.+|. ..+.| ...++....|++ ..+.||+++.|-|.
T Consensus 105 kw~f~~~~~pn~~-----ad~~eyfk~y~~---~a~~~~p~----i~vg~---~w~~e~l~~~~k-~~d~idfvt~~a~~ 168 (428)
T COG3664 105 KWPFYSPNEPNLL-----ADKQEYFKLYDA---TARQRAPS----IQVGG---SWNTERLHEFLK-KADEIDFVTELANS 168 (428)
T ss_pred ecceeecCCCCcc-----cchHHHHHHHHh---hhhccCcc----eeecc---ccCcHHHhhhhh-ccCcccceeecccc
Confidence 3367888999862 233333222221 12233443 23333 122233345555 56679999999986
Q ss_pred CCCC-CChhh-hhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHHHHhhh-
Q 037212 281 LGPG-VDDRL-IDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASI- 357 (551)
Q Consensus 281 ~~~g-~~~~~-~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~~~G~~~vSdtf~aalw~lD~Lg~~A~- 357 (551)
.... .+... .+..+.+. .......+.+++.++++.-++|+.++|+|..+ ++...+-++|+.|--.+..|..+..
T Consensus 169 ~~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~g~~ 245 (428)
T COG3664 169 VDAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREAGSP 245 (428)
T ss_pred cccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhcCCh
Confidence 4311 11111 11112222 33455678888899988889999999999877 5555566778776545444443322
Q ss_pred ---------cCCe-eEEeecccC-ccccCcCCCCCCcCCchHHHHHHHHhcCCceEE
Q 037212 358 ---------YGTK-TYCRQTLIG-GNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLS 403 (551)
Q Consensus 358 ---------~g~~-vv~~q~liG-g~Y~ll~~~~~~p~P~Yy~~lL~~~l~G~~vl~ 403 (551)
.... -.+.++..- +.+++.+.. ..-+|.|+.++++.++ |..++.
T Consensus 246 v~a~~yW~~sdl~e~~g~~~~~~~~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l~ 300 (428)
T COG3664 246 VDAFGYWTNSDLHEEHGPPEAPFVGGFELFAPY-GGRRPAWMAALFFNRL-GRTLLS 300 (428)
T ss_pred hhhhhhhhcccccccCCCcccccccceeeeccc-ccchhHHHHHHHHHHH-HHHhhh
Confidence 1110 001121100 223444433 3459999999999999 776654
No 18
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.48 E-value=0.44 Score=48.98 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCEEEEEeec-CCCccccCC----CCCCCCCC---hHHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCC
Q 037212 147 DELNIFFRRAGAVVTFGLNA-LRGRIIQSD----GSARGAWD---SSNAESLMRYTVNKGYKIYGWELGNELSGNGVGAR 218 (551)
Q Consensus 147 d~~~~f~~~~G~~~ifglN~-~~~~~~~~~----~~~~~~W~---~~~A~~~l~y~~~~g~~i~~wElGNEp~~~~~~~~ 218 (551)
+.|+++|.+.|.-++--+.. ..+..+... ......|. ..+.+++|+..+ ..-.|..|.+|||+
T Consensus 62 ~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-NHPSIi~W~~gNE~-------- 132 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDR-NHPSIIMWSLGNES-------- 132 (298)
T ss_dssp HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHT-T-TTEEEEEEEESS--------
T ss_pred HHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCc-CcCchheeecCccC--------
Confidence 68899999999999877655 111100000 00001111 123334444332 23347799999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcC
Q 037212 219 IGADQYASDVDRLQSIVQNIYKG 241 (551)
Q Consensus 219 ~ta~~Ya~d~~~~~~~~~~~~~~ 241 (551)
.+...+.++.+.+++.+|+
T Consensus 133 ----~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 ----DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp ----HHHHHHHHHHHHHHHH-TT
T ss_pred ----ccccchhHHHHHHHhcCCC
Confidence 3455567788888888886
No 19
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=90.73 E-value=0.91 Score=47.15 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEee
Q 037212 86 GNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLN 165 (551)
Q Consensus 86 ~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN 165 (551)
+-.++++++|..+-..+|+ |++. .++++-.+.+|+++++++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~-----------------------------~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD-----------------------------PSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS-------------------------------HHHHHHHTTS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc-----------------------------HHHHHHHhcCCceeeeccC
Confidence 5567889999888777764 4321 2333344458999999987
Q ss_pred cCCCccccCCCCCCCCCChHHHHHHHHHHHh---cCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q 037212 166 ALRGRIIQSDGSARGAWDSSNAESLMRYTVN---KGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGF 242 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~---~g~~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~ 242 (551)
-..-. ... -+...|..|++--.. ..-+|.+.-+|||.-... .......-.+.+++++++.- .
T Consensus 56 N~~l~-~la-------~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~-----~~~~lvpAm~ni~~aL~~~~--L 120 (310)
T PF00332_consen 56 NEDLA-SLA-------SSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGT-----DNAYLVPAMQNIHNALTAAG--L 120 (310)
T ss_dssp GGGHH-HHH-------HHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCS-----GGGGHHHHHHHHHHHHHHTT---
T ss_pred hHHHH-Hhc-------cCHHHHhhhhhhcccccCcccceeeeecccccccCc-----cceeeccHHHHHHHHHHhcC--c
Confidence 21000 000 134567778774222 124699999999986521 11145555667778887651 1
Q ss_pred CCCcEEEc------------cC-CCCChhh------HHHHHhhCCCC--cCeEEEEEeCCCCCCChhhhhhcc-------
Q 037212 243 KIKPLIIA------------PG-GFFDANW------FKEFIDKTPNS--LQVVTHHIYNLGPGVDDRLIDKIL------- 294 (551)
Q Consensus 243 ~~~p~~~g------------P~-~~~~~~w------~~~fL~~~g~~--id~vs~H~Y~~~~g~~~~~~~~~l------- 294 (551)
..++++.- |+ +.+..++ +.+||+..+.. +.++.++-|..++..-+ +--.+.
T Consensus 121 ~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~-l~yAlf~~~~~~~ 199 (310)
T PF00332_consen 121 SDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNIS-LDYALFQPNSGVV 199 (310)
T ss_dssp TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS--HHHHTT-SSS-SE
T ss_pred CCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCC-ccccccccccccc
Confidence 12345442 22 1233333 45777776643 23332232222211101 000111
Q ss_pred Cc--chhcccchhHHHHHHHHHHhC-CCCcEEEcccccccCCC
Q 037212 295 DP--SFLNSGSEPFSSLQSILRSSA-TSAVAWVGEAGGAYNSG 334 (551)
Q Consensus 295 ~~--~~l~~~~~~~~~l~~~~~~~~-~~~p~wlgEtnsa~~~G 334 (551)
|+ .|-.-+..+++.+...+.+.+ +++++|+||||-...|+
T Consensus 200 D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 200 DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 11 111112234566666666554 67899999999766444
No 20
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=84.59 E-value=19 Score=36.36 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHhcCC-cceeeeeeccCCCCCCCCCCCHHHHH
Q 037212 147 DELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGY-KIYGWELGNELSGNGVGARIGADQYA 225 (551)
Q Consensus 147 d~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~-~i~~wElGNEp~~~~~~~~~ta~~Ya 225 (551)
+.+..-+.+.|.+++.|+=+... ...+.+ -..+..|-...+. .+...-+|||.=. +...+++|.+
T Consensus 90 e~v~pAa~~~g~kv~lGiw~tdd----------~~~~~~-~til~ay~~~~~~d~v~~v~VGnEal~---r~~~tasql~ 155 (305)
T COG5309 90 ENVLPAAEASGFKVFLGIWPTDD----------IHDAVE-KTILSAYLPYNGWDDVTTVTVGNEALN---RNDLTASQLI 155 (305)
T ss_pred hhhHHHHHhcCceEEEEEeeccc----------hhhhHH-HHHHHHHhccCCCCceEEEEechhhhh---cCCCCHHHHH
Confidence 34444566778999999855321 111111 1223444433333 4889999999742 2358999999
Q ss_pred HHHHHHHHHHHhh
Q 037212 226 SDVDRLQSIVQNI 238 (551)
Q Consensus 226 ~d~~~~~~~~~~~ 238 (551)
+.....|.++++.
T Consensus 156 ~~I~~vrsav~~a 168 (305)
T COG5309 156 EYIDDVRSAVKEA 168 (305)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=82.95 E-value=41 Score=35.02 Aligned_cols=221 Identities=12% Similarity=0.051 Sum_probs=102.3
Q ss_pred cChHhHHHHHHHHHhcCCEEEEEeec-CCCccccCCCCCCC--CCChHH---HHH-HHHHH----HhcC--Ccceeeeee
Q 037212 141 LTMRRWDELNIFFRRAGAVVTFGLNA-LRGRIIQSDGSARG--AWDSSN---AES-LMRYT----VNKG--YKIYGWELG 207 (551)
Q Consensus 141 lt~~~wd~~~~f~~~~G~~~ifglN~-~~~~~~~~~~~~~~--~W~~~~---A~~-~l~y~----~~~g--~~i~~wElG 207 (551)
+.-+.-|.+++||++.|.++---.=+ ... +++ +... .+++.+ .++ +-+|. ...+ .+|++|.+=
T Consensus 56 ~~~~~~D~~~~~a~~~g~~vrGH~LvW~~~---~P~-w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVv 131 (320)
T PF00331_consen 56 FNFESADAILDWARENGIKVRGHTLVWHSQ---TPD-WVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVV 131 (320)
T ss_dssp EE-HHHHHHHHHHHHTT-EEEEEEEEESSS---S-H-HHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEE
T ss_pred cCccchhHHHHHHHhcCcceeeeeEEEccc---ccc-eeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEe
Confidence 33456799999999999987642212 211 221 0011 234433 232 33343 2234 579999999
Q ss_pred ccCCCC-C----CCCCCCHHHHHHHHHH-HHHHHHhhhcCCCCCcEEEccCC-C-CCh------hhHHHHHhhCCCCcCe
Q 037212 208 NELSGN-G----VGARIGADQYASDVDR-LQSIVQNIYKGFKIKPLIIAPGG-F-FDA------NWFKEFIDKTPNSLQV 273 (551)
Q Consensus 208 NEp~~~-~----~~~~~ta~~Ya~d~~~-~~~~~~~~~~~~~~~p~~~gP~~-~-~~~------~w~~~fL~~~g~~id~ 273 (551)
|||-.. + ...+.--+.++.|+.. .-++.++.+|+. +++==+- . ... .+.+.+. +.|-.||.
T Consensus 132 NE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a----~L~~NDy~~~~~~k~~~~~~lv~~l~-~~gvpIdg 206 (320)
T PF00331_consen 132 NEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNA----KLFYNDYNIESPAKRDAYLNLVKDLK-ARGVPIDG 206 (320)
T ss_dssp ES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS----EEEEEESSTTSTHHHHHHHHHHHHHH-HTTHCS-E
T ss_pred eecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCc----EEEeccccccchHHHHHHHHHHHHHH-hCCCccce
Confidence 998542 1 1111111222223322 224445556653 4431110 0 011 2334333 44556998
Q ss_pred EEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHh-CCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHH
Q 037212 274 VTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSS-ATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQL 352 (551)
Q Consensus 274 vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~-~~~~p~wlgEtnsa~~~G~~~vSdtf~aalw~lD~L 352 (551)
|-+...... +. + .+.+.+.+++. .-++|+++||.........+.....-..|-++-+.+
T Consensus 207 IG~Q~H~~~-~~-~------------------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~ 266 (320)
T PF00331_consen 207 IGLQSHFDA-GY-P------------------PEQIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFL 266 (320)
T ss_dssp EEEEEEEET-TS-S------------------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred echhhccCC-CC-C------------------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHH
Confidence 887422111 11 1 12222222322 347999999986544322211122234555788888
Q ss_pred HHhhhcC---CeeEEeecccC------c---cc-cCcCCCCCCcCCchHHHH
Q 037212 353 GMASIYG---TKTYCRQTLIG------G---NY-GLLNTNTFVPNPGYYSAL 391 (551)
Q Consensus 353 g~~A~~g---~~vv~~q~liG------g---~Y-~ll~~~~~~p~P~Yy~~l 391 (551)
-+.-++. +..+.-.++.- . .+ .|+|.+ +.|.|.||+.+
T Consensus 267 ~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~Kpa~~~~~ 317 (320)
T PF00331_consen 267 TACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPKPAYDAIV 317 (320)
T ss_dssp HHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-HHHHHHH
T ss_pred HHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCCHHHHHHH
Confidence 7777666 44444333321 1 12 355556 89999998754
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=79.74 E-value=3.9 Score=44.47 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCC
Q 037212 89 ILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALR 168 (551)
Q Consensus 89 ~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~ 168 (551)
.=+.+++.+|-..+|++=.++-. +-.+.+ .+ |+ =.-+..+++++-+++.|.++|++|.=-.
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri--~p~g~~----~~---n~----------~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRI--FPEGTG----PV---NP----------KGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhc--ccCCCC----Cc---CH----------HHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 34678889999999987665542 111010 00 00 0124568999999999999999996311
Q ss_pred CccccCCC-CCCCCC-ChHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 169 GRIIQSDG-SARGAW-DSSNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 169 ~~~~~~~~-~~~~~W-~~~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
.+.. ...|.| +++....+++|++ ..+..+++|+.=|||+.
T Consensus 119 ----~P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 119 ----LPQALEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred ----ccHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 1100 002556 4556777889974 46778999999999985
No 23
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=73.15 E-value=1.2e+02 Score=31.48 Aligned_cols=226 Identities=16% Similarity=0.262 Sum_probs=89.9
Q ss_pred EEEEEcCCCccc-ccCCceeEeeecccCCCCCCCCCccCCccccCCCC-CCCHHH----HHHHHHcCCCeEecCCcccee
Q 037212 38 GTVFINGTVAIA-KTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLD-LGNPIL----LKAVKAFSPLKIRMGGTLQDK 111 (551)
Q Consensus 38 ~~v~i~~~~~~~-~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~-l~~~~L----~~l~k~L~p~~LRiGG~~~D~ 111 (551)
-.|+|...+=.. .-..+|+=-.+++=|..... .-...| |.++.. +.++|.||.-.||+=
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~---------~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY------ 73 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSE---------PSNYIDPLADPEACKRDIPLLKELGINTIRVY------ 73 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE-------------------SS--GGG-HHHHHHHHHHHHHHT-SEEEES------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCC---------CccCcCcccCHHHHHHhHHHHHHcCCCEEEEE------
Confidence 345566655443 44667776666644432100 000133 444322 237799999999962
Q ss_pred eEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHH
Q 037212 112 AVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLM 191 (551)
Q Consensus 112 ~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l 191 (551)
.-+++. .-|+.|+.+..+|.=+|+.||.-... +........|+...-....
T Consensus 74 -~vdp~~--------------------------nHd~CM~~~~~aGIYvi~Dl~~p~~s--I~r~~P~~sw~~~l~~~~~ 124 (314)
T PF03198_consen 74 -SVDPSK--------------------------NHDECMSAFADAGIYVILDLNTPNGS--INRSDPAPSWNTDLLDRYF 124 (314)
T ss_dssp ----TTS----------------------------HHHHHHHHHTT-EEEEES-BTTBS----TTS------HHHHHHHH
T ss_pred -EeCCCC--------------------------CHHHHHHHHHhCCCEEEEecCCCCcc--ccCCCCcCCCCHHHHHHHH
Confidence 122211 01899999999999999999975332 2222233467654433332
Q ss_pred HHHHh-cCC-cceeeeeeccCCCCCCCCCCCHHHHHHHH-HHHHHHHHhhhcCCCCCcEEEccCCCCChh---hHHHHHh
Q 037212 192 RYTVN-KGY-KIYGWELGNELSGNGVGARIGADQYASDV-DRLQSIVQNIYKGFKIKPLIIAPGGFFDAN---WFKEFID 265 (551)
Q Consensus 192 ~y~~~-~g~-~i~~wElGNEp~~~~~~~~~ta~~Ya~d~-~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~---w~~~fL~ 265 (551)
+-... .+| |+.++=+|||.-... .+..+..|.+-+ +..++.|++. ..+..-+|-..+...+ -+.++|.
T Consensus 125 ~vid~fa~Y~N~LgFf~GNEVin~~--~~t~aap~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~ 198 (314)
T PF03198_consen 125 AVIDAFAKYDNTLGFFAGNEVINDA--SNTNAAPYVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLN 198 (314)
T ss_dssp HHHHHHTT-TTEEEEEEEESSS-ST--T-GGGHHHHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTT
T ss_pred HHHHHhccCCceEEEEecceeecCC--CCcccHHHHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhc
Confidence 22221 334 577999999986422 123344454332 2233334332 1223444544332222 2445554
Q ss_pred hCC--CCcCeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEccccc
Q 037212 266 KTP--NSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGG 329 (551)
Q Consensus 266 ~~g--~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtns 329 (551)
=.. ..+|++.+-.|-+- |.++ .+ ..-++.+.+..+. -..|+.++|.|=
T Consensus 199 Cg~~~~~iDf~g~N~Y~WC-g~St--f~-----------~SGy~~l~~~f~~--y~vPvffSEyGC 248 (314)
T PF03198_consen 199 CGDDDERIDFFGLNSYEWC-GDST--FE-----------TSGYDRLTKEFSN--YSVPVFFSEYGC 248 (314)
T ss_dssp BTT-----S-EEEEE-----SS----HH-----------HHSHHHHHHHHTT---SS-EEEEEE--
T ss_pred CCCcccccceeeeccceec-CCCc--cc-----------cccHHHHHHHhhC--CCCCeEEcccCC
Confidence 222 25999999999764 2111 10 0112222222222 369999999774
No 24
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=72.03 E-value=43 Score=31.42 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHH---hcCCcceeeeeeccCCCCCCCCCCC
Q 037212 144 RRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTV---NKGYKIYGWELGNELSGNGVGARIG 220 (551)
Q Consensus 144 ~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~---~~g~~i~~wElGNEp~~~~~~~~~t 220 (551)
+-.+.+++.|++.|.++++||++...--+ ....+|..+.+..+++... .+.-.+++|=|-+|++.. .+.
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~----~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~----~~~ 136 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLYFDPDYWD----QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY----NWN 136 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCCCCchhhh----ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc----ccc
Confidence 45689999999999999999987422100 0011221111112222111 122269999999999863 232
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCcEEEcc
Q 037212 221 ADQYASDVDRLQSIVQNIYKGFKIKPLIIAP 251 (551)
Q Consensus 221 a~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP 251 (551)
. ...++.+.+.++++.++ +|..+.|
T Consensus 137 ~---~~~~~~l~~~lk~~s~~---~Pv~ISp 161 (166)
T PF14488_consen 137 A---PERFALLGKYLKQISPG---KPVMISP 161 (166)
T ss_pred h---HHHHHHHHHHHHHhCCC---CCeEEec
Confidence 2 44566788888887553 5777776
No 25
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=69.86 E-value=36 Score=36.07 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecC
Q 037212 90 LLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNAL 167 (551)
Q Consensus 90 L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~ 167 (551)
-+.++|++|--.+|+|=- .|.. . .| +.+.|.| +.+|.+++.+++.|.++|+++...
T Consensus 15 d~~~m~~~G~n~vri~~~-----~W~~-l-----EP----~eG~ydF-------~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEF-----SWSW-L-----EP----EEGQYDF-------SWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp HHHHHHHHT-SEEEE-CC-----EHHH-H------S----BTTB----------HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHHHHHcCCCEEEEEEe-----chhh-c-----cC----CCCeeec-------HHHHHHHHHHHhccCeEEEEeccc
Confidence 356668889999998632 2321 0 11 1122333 458999999999999999988643
No 26
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=69.15 E-value=89 Score=38.04 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCEEEEEeecC-CCccccCCCCCCCCCChHHHHHHHHHHH---hcCCcceeeeeeccCCCCCCCCCCCHH
Q 037212 147 DELNIFFRRAGAVVTFGLNAL-RGRIIQSDGSARGAWDSSNAESLMRYTV---NKGYKIYGWELGNELSGNGVGARIGAD 222 (551)
Q Consensus 147 d~~~~f~~~~G~~~ifglN~~-~~~~~~~~~~~~~~W~~~~A~~~l~y~~---~~g~~i~~wElGNEp~~~~~~~~~ta~ 222 (551)
+.|+++|.+.|.-++=-.|+. .+......-.....|... ..+-++... ..+-.|..|.+|||+..
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~~-~~~~~~~mV~RdrNHPSIi~WSlgNE~~~---------- 465 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLPA-MSERVTRMVQRDRNHPSIIIWSLGNESGH---------- 465 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHHH-HHHHHHHHHHhCCCCCEEEEEeCccCCCc----------
Confidence 688999999999888666652 110000000001123111 112222221 12334779999999842
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q 037212 223 QYASDVDRLQSIVQNIYKG 241 (551)
Q Consensus 223 ~Ya~d~~~~~~~~~~~~~~ 241 (551)
+..++++.+++|+.+|+
T Consensus 466 --g~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 466 --GANHDALYRWIKSNDPS 482 (1027)
T ss_pred --ChhHHHHHHHHHhhCCC
Confidence 12245677888888875
No 27
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=64.36 E-value=2.1e+02 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.305 Sum_probs=40.7
Q ss_pred CCcCCchHHHHHHHHhcCCceEEe--ecCCCceeEEEEEEeeCCCcEEEEEEeCCCCceEEEEEe
Q 037212 381 FVPNPGYYSALLWHRLMGSTVLST--SLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVT 443 (551)
Q Consensus 381 ~~p~P~Yy~~lL~~~l~G~~vl~~--~~~~~~~v~~YA~c~~~~g~vtlllIN~~~~~~~~v~l~ 443 (551)
+--.|-||+.--|.+++-+....+ ..+.+..|.+-|.- +.+|+-++++.|++.... .++|+
T Consensus 432 fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~afl-npdGskvvVllnk~s~~~-~~~I~ 494 (518)
T KOG2566|consen 432 FYKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFL-NPDGSKVVVLLNKNSLDS-PLTIK 494 (518)
T ss_pred HhhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEE-cCCCcEEEEEeccCCCCC-ceEEe
Confidence 445889999999999985443333 33334445554543 346888999999998764 66664
No 28
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=61.87 E-value=29 Score=36.84 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCcEEEcccccccCC-CC--CCcchHHHHHHHHHHHHHHhhhcCCeeE----EeecccC---ccccCcCCC
Q 037212 310 QSILRSSATSAVAWVGEAGGAYNS-GH--NLVTNAFVFSFWYLDQLGMASIYGTKTY----CRQTLIG---GNYGLLNTN 379 (551)
Q Consensus 310 ~~~~~~~~~~~p~wlgEtnsa~~~-G~--~~vSdtf~aalw~lD~Lg~~A~~g~~vv----~~q~liG---g~Y~ll~~~ 379 (551)
...++....++|+|+.|+.+...+ +. ....+-.+ .+|..-.+.. |.+.+ .|+...| ..+++++.+
T Consensus 279 ~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~-~~~~~~~~A~----Ga~~i~~~~wr~~~~g~E~~~~g~~~~d 353 (374)
T PF02449_consen 279 HDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGEL-RLWSWQAIAH----GADGILFWQWRQSRFGAEQFHGGLVDHD 353 (374)
T ss_dssp HHHHHHHTTT--EEEEEE--S--SSSSS-----TTHH-HHHHHHHHHT----T-S-EEEC-SB--SSSTTTTS--SB-TT
T ss_pred HHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHH-HHHHHHHHHH----hCCeeEeeeccCCCCCchhhhcccCCcc
Confidence 334444467899999998653211 11 11111222 3444444443 43322 3556655 457899988
Q ss_pred CCCcCCchHHHH
Q 037212 380 TFVPNPGYYSAL 391 (551)
Q Consensus 380 ~~~p~P~Yy~~l 391 (551)
...|++.|.-..
T Consensus 354 g~~~~~~~~e~~ 365 (374)
T PF02449_consen 354 GREPTRRYREVA 365 (374)
T ss_dssp S--B-HHHHHHH
T ss_pred CCCCCcHHHHHH
Confidence 447777776544
No 29
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=58.86 E-value=1.1e+02 Score=35.02 Aligned_cols=181 Identities=15% Similarity=0.214 Sum_probs=75.4
Q ss_pred HhcCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhh-hcCCCCCcEEEccCCCCChhhHHHHHhhC--CCCc
Q 037212 195 VNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNI-YKGFKIKPLIIAPGGFFDANWFKEFIDKT--PNSL 271 (551)
Q Consensus 195 ~~~g~~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~-~~~~~~~p~~~gP~~~~~~~w~~~fL~~~--g~~i 271 (551)
+.+|+.|+|..+-||=. ++ .+|. +.||+.+++. | .+.+|++.+.... .+...++... ...|
T Consensus 168 ~~~gl~idYvg~~NEr~-------~~-~~~i---k~lr~~l~~~gy----~~vkiva~D~~~~-~~~~~m~~D~~l~~av 231 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERG-------FD-VNYI---KWLRKALNSNGY----NKVKIVAADNNWE-SISDDMLSDPELRNAV 231 (669)
T ss_dssp HHH-----EE-S-TTS-----------HHHH---HHHHHHHHHTT-----TT-EEEEEEE-ST-THHHHHHH-HHHHHH-
T ss_pred HHhCCCceEechhhccC-------CC-hhHH---HHHHHHHhhccc----cceEEEEeCCCcc-chhhhhhcCHHHHhcc
Confidence 45799999998888864 23 3453 4677888765 3 3479999886432 3444444321 1248
Q ss_pred CeEEEEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHH--HH
Q 037212 272 QVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFW--YL 349 (551)
Q Consensus 272 d~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~~~G~~~vSdtf~aalw--~l 349 (551)
|++..| |+ +.+.. . . .+.+ +||+|-.|-.+-++ +..+++-| .+
T Consensus 232 dvig~H-Y~---~~~~~--~-------------~-------a~~~--~K~lW~SE~~s~~~-------~~~g~g~~ar~l 276 (669)
T PF02057_consen 232 DVIGYH-YP---GTYSS--K-------------N-------AKLT--GKPLWSSEDYSTFN-------YNVGAGCWARIL 276 (669)
T ss_dssp -EEEEE-S----TT-----H-------------H-------HHHH--T-EEEEEEEE-S-T-------THHHHHHHHHHH
T ss_pred cEeccc-cC---CCCcH--H-------------H-------HHHh--CCCeEEcCCccccc-------CcCchHHHHHHH
Confidence 999999 54 21110 0 0 0112 69999999665432 12232322 23
Q ss_pred HHHHHhhhcCCeeEEeecccCccccCcCC---------C----CCCcCCchHHHHHHHHhcCC--ceEEeecCCCceeEE
Q 037212 350 DQLGMASIYGTKTYCRQTLIGGNYGLLNT---------N----TFVPNPGYYSALLWHRLMGS--TVLSTSLSETTKIRA 414 (551)
Q Consensus 350 D~Lg~~A~~g~~vv~~q~liGg~Y~ll~~---------~----~~~p~P~Yy~~lL~~~l~G~--~vl~~~~~~~~~v~~ 414 (551)
++--. .-....++-|.+|++.|.-+.. + -+...+..|+..=+.++.-. +-++.. ..-.+-..
T Consensus 277 n~~yv--~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt~pGW~YL~~~-G~l~~gGS 353 (669)
T PF02057_consen 277 NRNYV--NGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFTQPGWRYLDSV-GHLRGGGS 353 (669)
T ss_dssp HHHHH--HH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT--TT-EEES---EE-TTS-E
T ss_pred Hhhhh--ccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccCCCCeEEccCc-cccCCCcc
Confidence 32211 1122355778899888743221 1 13456778888888887633 344321 10111223
Q ss_pred EEEEeeCCCcEEEEE
Q 037212 415 YAHCSKQSQGTTLLL 429 (551)
Q Consensus 415 YA~c~~~~g~vtlll 429 (551)
|...+.+.|.+++++
T Consensus 354 YVtLtd~~gn~tiii 368 (669)
T PF02057_consen 354 YVTLTDGTGNYTIII 368 (669)
T ss_dssp EEEEE-SSS-EEEEE
T ss_pred eEEeecCCCCceEEE
Confidence 444444445666655
No 30
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=46.94 E-value=44 Score=36.90 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=66.3
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCc
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGR 170 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~ 170 (551)
+.+++.||-...|++=+++= ..+..... .+ |+ -.-+..+.+++-+++.|.+||++|+--.-.
T Consensus 77 i~l~~~lG~~~yR~si~WsR---i~P~g~~~--~~---n~----------~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWSR---LFPQGDEL--TP---NQ----------QGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred HHHHHHcCCCeEEeeceeee---eeeCCCCC--CC---CH----------HHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 56889999999999877554 21211100 01 10 112456999999999999999999843211
Q ss_pred cccCCCCCCCCCCh-HHHHHHHHHH----HhcCCcceeeeeeccCCC
Q 037212 171 IIQSDGSARGAWDS-SNAESLMRYT----VNKGYKIYGWELGNELSG 212 (551)
Q Consensus 171 ~~~~~~~~~~~W~~-~~A~~~l~y~----~~~g~~i~~wElGNEp~~ 212 (551)
.-.. ..-|.|.. +.+..+++|+ +..|..|++|--=|||+.
T Consensus 139 ~~l~--~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 139 MHLV--TEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred HHHH--HhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 0000 01266855 4456688887 457889999999999984
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=45.93 E-value=51 Score=36.40 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=66.0
Q ss_pred HHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCC
Q 037212 90 LLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRG 169 (551)
Q Consensus 90 L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~ 169 (551)
=+.|++.||--..|++=.++=- + +..... .+ |+ - .-+..+.+++-+++.|.+|+++|.=-.-
T Consensus 74 DI~Lm~elG~~~yRfSIsWsRI--~-P~G~~~--~~---N~---~-------gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 74 DIKLFAEMGFKCFRTSIAWTRI--F-PKGDEA--QP---NE---E-------GLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred HHHHHHHcCCCEEEecccceee--c-cCCCCC--CC---CH---H-------HHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 3678899999999987665431 1 211000 00 00 0 1134588999999999999999962111
Q ss_pred ccccCCCCCCCCC-ChHHHHHHHHHH----HhcCCcceeeeeeccCCC
Q 037212 170 RIIQSDGSARGAW-DSSNAESLMRYT----VNKGYKIYGWELGNELSG 212 (551)
Q Consensus 170 ~~~~~~~~~~~~W-~~~~A~~~l~y~----~~~g~~i~~wElGNEp~~ 212 (551)
..... ..-|.| +++.+..+++|| +..|..|++|--=|||+.
T Consensus 136 P~~L~--~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 136 PLHLV--QQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred CHHHH--HhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 00000 011668 666678889998 457889999999999983
No 32
>smart00632 Aamy_C Aamy_C domain.
Probab=44.89 E-value=1.4e+02 Score=24.13 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=17.0
Q ss_pred EEEEEeeCCCcEEEEEEeCCCCceEEEEEe
Q 037212 414 AYAHCSKQSQGTTLLLINLDGNTTARVRVT 443 (551)
Q Consensus 414 ~YA~c~~~~g~vtlllIN~~~~~~~~v~l~ 443 (551)
+|+.+. |...+++||+...+ .++++.
T Consensus 10 ~laF~R---g~~g~VaiN~~~~~-~~~~~~ 35 (81)
T smart00632 10 QIAFER---GSKGFVAINRSDSD-LTITLQ 35 (81)
T ss_pred EEEEEC---CCeEEEEEECCCCc-eEEEEe
Confidence 555542 57788889998763 455553
No 33
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=42.87 E-value=83 Score=34.56 Aligned_cols=156 Identities=16% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCceeEeeecccCCCCCCCCCccCCccccCCCCCCCHHHHHHHHHcCCCeEec----CCccceeeEeecCCCCCCCCCcc
Q 037212 52 DDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRM----GGTLQDKAVYESKGIDEPCTPFV 127 (551)
Q Consensus 52 ~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~L~~l~k~L~p~~LRi----GG~~~D~~~y~~~~~~~~~~p~~ 127 (551)
...=.-+++||+||... .++ .+|. +++..|...+-|.++-+ ||++++....-.+..+..|.
T Consensus 13 ~~g~~~~S~EfFpPkT~---------~Gv--~NL~-~R~dRm~~~g~P~FvdvTWgagG~ta~~s~~ias~~q~~~~--- 77 (590)
T KOG0564|consen 13 VSGKTAFSFEFFPPKTE---------AGV--PNLY-ERMDRMSEGGPPTFVDVTWGAGGSTAELSLGIASSAQNVCG--- 77 (590)
T ss_pred cccCceeEEEecCcccc---------ccc--ccHH-HHHHHHHhcCCCeEEEEEecCCCCcccccHHHHHHHHHhcC---
Confidence 33444578899998432 122 2354 34666766555777764 56555433332221111110
Q ss_pred cCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHH-----HHHHHHHHHhc-CCcc
Q 037212 128 KNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSN-----AESLMRYTVNK-GYKI 201 (551)
Q Consensus 128 ~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~-----A~~~l~y~~~~-g~~i 201 (551)
.+.-+. .+=.....+..|.-++-|+..|.+=|+.| .|. .+- ....|...+ |.++++|.+++ |...
T Consensus 78 -v~t~mH-lTCtn~~~~~Id~aLe~a~~~GirNILAL---RGD--pP~--g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF 148 (590)
T KOG0564|consen 78 -LETCMH-LTCTNMPKEMIDKALEQAKALGIRNILAL---RGD--PPI--GQDKWVEEEGGFRYAVDLVRYIRSKYGDYF 148 (590)
T ss_pred -ccceee-eeccCccHHHHHHHHHHHHHhCchhhhhh---cCC--CCC--CccccccccCCchhHHHHHHHHHHHhCCeE
Confidence 000000 00011234567888888999999988855 332 111 123365555 99999999654 4322
Q ss_pred eeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 037212 202 YGWELGNELSGNGVGARIGADQYASDVDRLQSIV 235 (551)
Q Consensus 202 ~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~ 235 (551)
+..+.=-|.++ +. ....+|-.|..-+.+-+
T Consensus 149 -~IgVAgYPEgh--pe-~~~~~~~~Dl~yLk~Kv 178 (590)
T KOG0564|consen 149 -CIGVAGYPEGH--PE-APSHDYLADLPYLKEKV 178 (590)
T ss_pred -EEEeccCCCCC--cC-CcccchhhhhHHHHHhh
Confidence 33333344432 11 11223666665555444
No 34
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=42.30 E-value=75 Score=37.48 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCEEEEEeecC-CCccccCCCCCCCCCChHHHHHHHHHHH---hcCCcceeeeeeccCC
Q 037212 147 DELNIFFRRAGAVVTFGLNAL-RGRIIQSDGSARGAWDSSNAESLMRYTV---NKGYKIYGWELGNELS 211 (551)
Q Consensus 147 d~~~~f~~~~G~~~ifglN~~-~~~~~~~~~~~~~~W~~~~A~~~l~y~~---~~g~~i~~wElGNEp~ 211 (551)
++|+++|.+.|.=||==.+.. ++. ++ ...| .+++.+-+++.. +..-.|.-|.+|||+.
T Consensus 347 ~~~ydLcDelGllV~~Ea~~~~~~~---~~---~~~~-~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 347 EEFYDLCDELGLLVIDEAMIETHGM---PD---DPEW-RKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred HHHHHHHHHhCcEEEEecchhhcCC---CC---Ccch-hHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 789999999999998766652 221 11 1223 334444344331 2233477999999975
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=40.39 E-value=61 Score=35.73 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCc
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGR 170 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~ 170 (551)
+.|++.||-...|++=+++=- +=.+.+ .+ |+ - .-+..+++++-+++.|.+|+++|.=-.-.
T Consensus 60 i~L~~~lG~~~yRfSIsWsRI--~P~G~g----~v---N~---~-------gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 60 LKLAEEFGVNGIRISIAWSRI--FPDGYG----EV---NP---K-------GVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHhCCCEEEeeccHhhc--CcCCCC----Cc---CH---H-------HHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 678899999888887664431 101100 00 10 0 12446899999999999999999731111
Q ss_pred cccCCCCCCCCC-ChHHHHHHHHHH----HhcCCcceeeeeeccCCC
Q 037212 171 IIQSDGSARGAW-DSSNAESLMRYT----VNKGYKIYGWELGNELSG 212 (551)
Q Consensus 171 ~~~~~~~~~~~W-~~~~A~~~l~y~----~~~g~~i~~wElGNEp~~ 212 (551)
....+ .|.| +++.+..+++|| +..|. |++|--=|||+.
T Consensus 121 ~~L~~---~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 121 EALHS---NGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred HHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 00101 3667 445567789997 45788 999999999985
No 36
>PLN02849 beta-glucosidase
Probab=40.05 E-value=58 Score=36.25 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCC
Q 037212 89 ILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALR 168 (551)
Q Consensus 89 ~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~ 168 (551)
.=+.|++.||--..|++=+++=- +-.+.+ .+ |+ =.-+.-+++++-+.+.|.+|+++|.=-.
T Consensus 83 eDI~Lm~~lG~~aYRfSIsWsRI--~P~G~g----~v---N~----------~gl~fY~~lid~l~~~GI~P~VTL~H~d 143 (503)
T PLN02849 83 EDVKLMVETGLDAFRFSISWSRL--IPNGRG----SV---NP----------KGLQFYKNFIQELVKHGIEPHVTLFHYD 143 (503)
T ss_pred HHHHHHHHcCCCeEEEeccHHhc--CcCCCC----CC---CH----------HHHHHHHHHHHHHHHcCCeEEEeecCCC
Confidence 33678889998888886554431 100100 00 10 0113458899999999999999996211
Q ss_pred CccccCCCCCCCCC-ChHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 169 GRIIQSDGSARGAW-DSSNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 169 ~~~~~~~~~~~~~W-~~~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
-.....+ .-|.| +++.+..+++||+ ..|..|++|--=|||+.
T Consensus 144 lP~~L~~--~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 144 HPQYLED--DYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CcHHHHH--hcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 1000000 01667 4555778899974 57999999999999984
No 37
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=39.27 E-value=68 Score=32.73 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccChHhHHHHHHHHHhcCCEEEEEeecCCCcc-ccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCC
Q 037212 140 CLTMRRWDELNIFFRRAGAVVTFGLNALRGRI-IQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGAR 218 (551)
Q Consensus 140 ~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~-~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEp~~~~~~~~ 218 (551)
.++.+....+++||.+-|++-++- |.+=... ...+.+....+....-.++++|++++|..|..|---+.-
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~-------- 98 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG-------- 98 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT--------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc--------
Confidence 467788899999999999998874 5432100 000001112234566889999999999988777433221
Q ss_pred CCHHHHHHHHHHHHHHHHhh-hcCCCCCcEEEccCCCCChhhHHHHHhhCCCCcCeEEEE
Q 037212 219 IGADQYASDVDRLQSIVQNI-YKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHH 277 (551)
Q Consensus 219 ~ta~~Ya~d~~~~~~~~~~~-~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~id~vs~H 277 (551)
++...|-++.+++-+.+++. ... .+..+++-++..-..|.+++++.+...==.|.+|
T Consensus 99 ~~~~~~~~~~~~~f~~~~~~Gv~G--vKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 99 GNVANLEKQLDEAFKLYAKWGVKG--VKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp TBHHHHHCCHHHHHHHHHHCTEEE--EEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred hhhHhHHHHHHHHHHHHHHcCCCE--EeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEec
Confidence 23333444433333333332 111 2233444332222367788887665432366677
No 38
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=38.62 E-value=59 Score=26.84 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=12.4
Q ss_pred CceEEcCceEEEEEe
Q 037212 526 APIIVAPFSIVFAEI 540 (551)
Q Consensus 526 ~~i~lpp~S~~F~vi 540 (551)
..+.|||+|...+.+
T Consensus 79 ~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 79 ITVTLPPYSALVLKL 93 (95)
T ss_dssp EEEEESTTEEEEEEE
T ss_pred EEEEECCCEEEEEEE
Confidence 369999999988765
No 39
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=38.30 E-value=2.3e+02 Score=29.15 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=61.4
Q ss_pred ccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCCC----CCC
Q 037212 140 CLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSG----NGV 215 (551)
Q Consensus 140 ~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEp~~----~~~ 215 (551)
.++.+++.++++.+++. .-+.++....+. + .-+.+..++++-.++.|.++ ..|||=|.-. ...
T Consensus 90 ~l~~~~L~~l~~~i~~~--~~~~~isi~trp----d------~l~~e~l~~L~~l~~~G~~~-~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 90 YAPVEVLKEMYEQALSY--DDVVGLSVGTRP----D------CVPDEVLDLLAEYVERGYEV-WVELGLQTAHDKTLKKI 156 (302)
T ss_pred CCCHHHHHHHHHHHhCC--CCEEEEEEEecC----C------cCCHHHHHHHHHhhhCCceE-EEEEccCcCCHHHHHHH
Confidence 56778888888888864 344556554431 1 12344445544444456543 6788866543 223
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEc-cCCCCChhhH--HHHHhhCCCCcCeEEEEEeCCCCC
Q 037212 216 GARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIA-PGGFFDANWF--KEFIDKTPNSLQVVTHHIYNLGPG 284 (551)
Q Consensus 216 ~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~g-P~~~~~~~w~--~~fL~~~g~~id~vs~H~Y~~~~g 284 (551)
+...+.+++.+-++. +++..-.. ..-.++| |+ ....++. .+++...+ +|.+++|.+..-+|
T Consensus 157 ~Rg~t~~~~~~ai~~----l~~~gi~v-~~~lI~GlPg-et~e~~~~t~~~l~~l~--~d~i~i~~l~~~pg 220 (302)
T TIGR01212 157 NRGHDFACYVDAVKR----ARKRGIKV-CSHVILGLPG-EDREEMMETAKIVSLLD--VDGIKIHPLHVVKG 220 (302)
T ss_pred cCcChHHHHHHHHHH----HHHcCCEE-EEeEEECCCC-CCHHHHHHHHHHHHhcC--CCEEEEEEEEecCC
Confidence 444565555443333 33321000 0124555 44 2222333 23444333 67777777655445
No 40
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=37.71 E-value=69 Score=35.40 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=64.0
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCc
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGR 170 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~ 170 (551)
+.|++.||-...|++=+++= ++ +..... .+ |+. .-+.-+++++-+.+.|.+|+++|.=-.-.
T Consensus 73 i~Lm~~lG~~~yRfSIsWsR--I~-P~G~~~--~~---N~~----------gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 73 IALFAEMGFKCFRTSIAWTR--IF-PQGDEL--EP---NEE----------GLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHcCCCEEEeccchhh--cC-cCCCCC--CC---CHH----------HHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 67889999988888765443 11 110000 00 100 11345888999999999999999621110
Q ss_pred cccCCCCCCCCC-ChHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 171 IIQSDGSARGAW-DSSNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 171 ~~~~~~~~~~~W-~~~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
....+ .-|.| +++.+..+++||+ ..|..|++|--=|||+.
T Consensus 135 ~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 135 YHLVT--EYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred HHHHH--hcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 00000 01678 4455777899974 57999999999999984
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=37.68 E-value=1.4e+02 Score=36.41 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCEEEEEeecC-CCccccCCC---CCCCCCCh---HHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCCC
Q 037212 147 DELNIFFRRAGAVVTFGLNAL-RGRIIQSDG---SARGAWDS---SNAESLMRYTVNKGYKIYGWELGNELSGNGVGARI 219 (551)
Q Consensus 147 d~~~~f~~~~G~~~ifglN~~-~~~~~~~~~---~~~~~W~~---~~A~~~l~y~~~~g~~i~~wElGNEp~~~~~~~~~ 219 (551)
..|++.|.+.|.-++=-.|+. .+-....+. .....|.. .+++++++--+ ..-.|..|.+|||...
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-NHPSIi~WslGNE~~~------- 452 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQK-NHPSIIIWSLGNESGY------- 452 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCccc-------
Confidence 688999999999887655542 110000000 00011211 22333333221 2334779999999842
Q ss_pred CHHHHHHHHHHHHHHHHhhhcC
Q 037212 220 GADQYASDVDRLQSIVQNIYKG 241 (551)
Q Consensus 220 ta~~Ya~d~~~~~~~~~~~~~~ 241 (551)
+..++++.+++|+.+|+
T Consensus 453 -----g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 453 -----GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred -----cHHHHHHHHHHHHhCCC
Confidence 23466788899998875
No 42
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=37.10 E-value=4.6e+02 Score=26.52 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCCHHHH
Q 037212 145 RWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQY 224 (551)
Q Consensus 145 ~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEp~~~~~~~~~ta~~Y 224 (551)
..+.+++..++.|++..|=++.... ...+ ++++...+. .|||||=-..+..-...++++.
T Consensus 29 nt~riL~lL~~~gikATFFv~g~~~-----------e~~p----~lir~i~~~-----GhEIgsHg~sH~~l~~ls~ee~ 88 (265)
T TIGR03006 29 NTDRILDLLDRHGVKATFFTLGWVA-----------ERYP----ELVRRIVAA-----GHELASHGYGHERVTTQTPEAF 88 (265)
T ss_pred hHHHHHHHHHHcCCcEEEEEeccch-----------hhCH----HHHHHHHHc-----CCEeeeccccCcCchhCCHHHH
Confidence 3578999999999999998763211 0123 344444434 4688887665433346889999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCc-EEEccCCCC--ChhhHHHHHhhCCCC
Q 037212 225 ASDVDRLQSIVQNIYKGFKIKP-LIIAPGGFF--DANWFKEFIDKTPNS 270 (551)
Q Consensus 225 a~d~~~~~~~~~~~~~~~~~~p-~~~gP~~~~--~~~w~~~fL~~~g~~ 270 (551)
.+|..+-.++|+++-.. .+ -+-+|+... ...|..+.|++.|=.
T Consensus 89 ~~eI~~s~~~Le~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~ 134 (265)
T TIGR03006 89 RADIRRSKALLEDLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAGYR 134 (265)
T ss_pred HHHHHHHHHHHHHHhCC---CceEEECCCCCCCCCcHHHHHHHHHCCCE
Confidence 99999999999887322 23 244565422 235777888887743
No 43
>PLN02814 beta-glucosidase
Probab=36.09 E-value=71 Score=35.57 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCc
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGR 170 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~ 170 (551)
+.|+|.||-...|++=+++=- +-.+.+ .+ |+ =.-+.-+++++-+++.|.+|+++|.=-.-.
T Consensus 83 I~L~k~lG~~ayRfSIsWsRI--~P~G~g----~~---N~----------~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 83 VKLMAEMGLESFRFSISWSRL--IPNGRG----LI---NP----------KGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHcCCCEEEEeccHhhc--CcCCCC----CC---CH----------HHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 678899999888887664431 101110 00 10 011345889999999999999999621110
Q ss_pred cccCCCCCCCCCCh-HHHHHHHHHH----HhcCCcceeeeeeccCCC
Q 037212 171 IIQSDGSARGAWDS-SNAESLMRYT----VNKGYKIYGWELGNELSG 212 (551)
Q Consensus 171 ~~~~~~~~~~~W~~-~~A~~~l~y~----~~~g~~i~~wElGNEp~~ 212 (551)
.-..+ .-|.|.. +.+..+++|| +..|..|++|--=|||+.
T Consensus 144 ~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 144 QSLED--EYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred HHHHH--hcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 00000 0156744 5566789997 457999999999999985
No 44
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=36.08 E-value=5.7e+02 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHH
Q 037212 144 RRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYT 194 (551)
Q Consensus 144 ~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~ 194 (551)
.++.+=++-|+..|.++++.|--+.|.+... +.+.|.-+..|.
T Consensus 90 Tqi~~di~~CQS~GiKVlLSLGG~~GnYs~~--------~d~dA~~fA~~L 132 (568)
T KOG4701|consen 90 TQIETDIQVCQSNGIKVLLSLGGYNGNYSLN--------NDDDATNFAFQL 132 (568)
T ss_pred chhhhHHHHHHhcCeEEEEeccCcccceeec--------cchhHHHHHHHH
Confidence 4456667889999999999998777765544 235566666653
No 45
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.54 E-value=85 Score=34.57 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCc
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGR 170 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~ 170 (551)
+.|++.||-...|++=+++=- + +.. .. + -|+ =.-+..+++++-+++.|.+|+++|.=-.-.
T Consensus 59 i~L~~~lG~~~yRfSIsWsRI--~-P~g-~~---~--~N~----------~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 59 LELAEEYGVNGIRISIAWSRI--F-PTG-YG---E--VNE----------KGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHcCCCEEEEecchhhc--c-CCC-CC---C--cCH----------HHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 678899999999987665431 1 110 00 0 010 012346888999999999999999731111
Q ss_pred cccCCCCCCCCCC-hHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 171 IIQSDGSARGAWD-SSNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 171 ~~~~~~~~~~~W~-~~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
.... ..|.|. ++.+..+++||+ ..|. |++|--=|||+.
T Consensus 120 ~~L~---~~GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 120 EALH---SNGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred HHHH---HcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 0010 136674 455667888973 4675 999999999985
No 46
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=33.65 E-value=98 Score=34.21 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCc
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGR 170 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~ 170 (551)
+.|++.||--..|++=+++= ++ +..... .+ |+. .-..-+++++-+.+.|.+|+++|.=-.-.
T Consensus 79 i~Lm~~lG~~aYRfSIsWsR--I~-P~G~~~--~~---N~~----------gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 79 IALFAEMGFKTYRMSIAWTR--IF-PKGDEL--EP---NEA----------GLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred HHHHHHcCCCEEEEecchhh--cc-cCCCCC--CC---CHH----------HHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 67889999888888765432 11 110000 00 100 11345899999999999999999621110
Q ss_pred cccCCCCCCCCCCh-HHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 171 IIQSDGSARGAWDS-SNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 171 ~~~~~~~~~~~W~~-~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
.... ..-|.|.. +.+..+++||+ ..|..|++|=-=|||+.
T Consensus 141 ~~L~--~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 141 MHLI--EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred HHHH--hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 0000 01266844 44677889973 57999999999999985
No 47
>PLN02998 beta-glucosidase
Probab=31.21 E-value=88 Score=34.79 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCC
Q 037212 90 LLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRG 169 (551)
Q Consensus 90 L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~ 169 (551)
=+.|++.||-...|++=+++=- + +.. .. .+ |+. .-+.-+.+++-+++.|.+|+++|.=-.-
T Consensus 87 Di~lmk~lG~~~YRfSIsWsRI--~-P~G-~g--~v---N~~----------gl~~Y~~lid~L~~~GIeP~VTL~H~dl 147 (497)
T PLN02998 87 DVKLMADMGLEAYRFSISWSRL--L-PSG-RG--PI---NPK----------GLQYYNNLIDELITHGIQPHVTLHHFDL 147 (497)
T ss_pred HHHHHHHcCCCeEEeeccHHhc--C-cCC-CC--Cc---CHH----------HHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 3678889998888887654431 1 110 00 00 100 1134588899999999999999972111
Q ss_pred ccccCCCCCCCCC-ChHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 170 RIIQSDGSARGAW-DSSNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 170 ~~~~~~~~~~~~W-~~~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
..... ..-|.| +++.+..+++|++ ..|..|++|=-=|||+.
T Consensus 148 P~~L~--~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 148 PQALE--DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CHHHH--HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 00000 001567 4455677899973 57999999999999985
No 48
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=30.51 E-value=5.3e+02 Score=26.34 Aligned_cols=91 Identities=15% Similarity=0.050 Sum_probs=48.2
Q ss_pred ccChHhH---HHHHHHHHhcCCEEEEEeecCCCccccCCCCCC--CCCChHHHHHHHHHHHh--cCC-cceeeeeeccCC
Q 037212 140 CLTMRRW---DELNIFFRRAGAVVTFGLNALRGRIIQSDGSAR--GAWDSSNAESLMRYTVN--KGY-KIYGWELGNELS 211 (551)
Q Consensus 140 ~lt~~~w---d~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~--~~W~~~~A~~~l~y~~~--~g~-~i~~wElGNEp~ 211 (551)
.+.++.| |..++.+.+.|..+-+.+=-+.. . .++++.. ..=.+++++..++|..+ ..+ || -|-||||-
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~-~-~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~Nv-iW~l~gd~- 156 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCP-Y-VPGTWGFGPNIMPPENAERYGRYVVARYGAYPNV-IWILGGDY- 156 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHH-H-H-------TTSS-HHHHHHHHHHHHHHHTT-SSE-EEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCc-c-ccccccccccCCCHHHHHHHHHHHHHHHhcCCCC-EEEecCcc-
Confidence 3456555 56678888889887643311000 0 0110111 12247788888898743 577 67 79999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q 037212 212 GNGVGARIGADQYASDVDRLQSIVQNIYKG 241 (551)
Q Consensus 212 ~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~ 241 (551)
. ......++++++.+.|++.+|.
T Consensus 157 ~-------~~~~~~~~w~~~~~~i~~~dp~ 179 (289)
T PF13204_consen 157 F-------DTEKTRADWDAMARGIKENDPY 179 (289)
T ss_dssp ---------TTSSHHHHHHHHHHHHHH--S
T ss_pred C-------CCCcCHHHHHHHHHHHHhhCCC
Confidence 1 1122367788899999988764
No 49
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=29.96 E-value=59 Score=35.61 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=59.7
Q ss_pred HHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccCh---HhHHHHHHHHHhcCCEEEEEeecC
Q 037212 91 LKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTM---RRWDELNIFFRRAGAVVTFGLNAL 167 (551)
Q Consensus 91 ~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~---~~wd~~~~f~~~~G~~~ifglN~~ 167 (551)
+.|++.||....|++=+++= ++ +.. ..+.+.+ ..-+++++-+++.|.+||++|.=-
T Consensus 64 i~l~~~lg~~~yRfsi~W~R--i~-P~g------------------~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~ 122 (455)
T PF00232_consen 64 IALMKELGVNAYRFSISWSR--IF-PDG------------------FEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF 122 (455)
T ss_dssp HHHHHHHT-SEEEEE--HHH--HS-TTS------------------SSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHhhccceeeeecchhh--ee-ecc------------------cccccCHhHhhhhHHHHHHHHhhccceeeeeeec
Confidence 67889999988887654332 11 110 0011222 345888888999999999999732
Q ss_pred CCccccCCCCCCCCC-ChHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 037212 168 RGRIIQSDGSARGAW-DSSNAESLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 168 ~~~~~~~~~~~~~~W-~~~~A~~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
.-..-.. ..|.| +++.+..+++||+ ..|..|++|---|||+.
T Consensus 123 ~~P~~l~---~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 123 DLPLWLE---DYGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNV 169 (455)
T ss_dssp --BHHHH---HHTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHH
T ss_pred cccccee---ecccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccce
Confidence 1100000 02557 4566777899974 57889999999999985
No 50
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=28.27 E-value=6.7e+02 Score=25.76 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=18.2
Q ss_pred ChHhHHHHHHHHHhcCCEEEEEee
Q 037212 142 TMRRWDELNIFFRRAGAVVTFGLN 165 (551)
Q Consensus 142 t~~~wd~~~~f~~~~G~~~ifglN 165 (551)
+...+.+.++.+|+.|.++++.+-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiG 81 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIG 81 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEe
Confidence 344556667788999999999874
No 51
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=27.00 E-value=62 Score=28.94 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHcCCCeEecCCccceeeEee
Q 037212 84 DLGNPILLKAVKAFSPLKIRMGGTLQDKAVYE 115 (551)
Q Consensus 84 ~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~ 115 (551)
..++-+|+...++||| |||=+=+..|+++||
T Consensus 6 ~~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 36 (127)
T PRK10984 6 GHPKSRLIKKFTALGP-YLREGQCEENRFFFD 36 (127)
T ss_pred CCCchHHHHHHHHhCc-hhchhcccCCCEEee
Confidence 3556788888899997 999999999999997
No 52
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=24.67 E-value=4.9e+02 Score=28.00 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeEecC-CccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeec
Q 037212 88 PILLKAVKAFSPLKIRMG-GTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNA 166 (551)
Q Consensus 88 ~~L~~l~k~L~p~~LRiG-G~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~ 166 (551)
+.....++..|--.||+. |-++= .+... ..|. ..+. -.....++..+++++.|..+++.+-.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~------~~p~------~~~~----~~~~~ld~~I~~a~~~gi~V~iD~H~ 138 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWAL-QATDG------DNPY------LIGL----TQLKILDEAINWAKKLGIYVLIDLHG 138 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhh-hccCC------CCCC------eecc----hHHHHHHHHHHHHHhcCeeEEEEecc
Confidence 556677788999999963 22111 11110 1111 1110 01125799999999999999997654
Q ss_pred CCCccccCCCCC-CCCCCh-----HHHHHHHHHHHh---cCCcceeeeeeccCCC
Q 037212 167 LRGRIIQSDGSA-RGAWDS-----SNAESLMRYTVN---KGYKIYGWELGNELSG 212 (551)
Q Consensus 167 ~~~~~~~~~~~~-~~~W~~-----~~A~~~l~y~~~---~g~~i~~wElGNEp~~ 212 (551)
..+....-+..+ .+.+.. +.-.+..++... ....|-.+|+=|||.+
T Consensus 139 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 139 YPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 332111111111 222222 333344444321 2334668999999996
No 53
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=23.65 E-value=73 Score=32.82 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=36.1
Q ss_pred HhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHhcCCc-ceeeeeecc
Q 037212 154 RRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYK-IYGWELGNE 209 (551)
Q Consensus 154 ~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~-i~~wElGNE 209 (551)
++.|+.+|+|+|--.+ .-.+.++|+.+++|++++|.. +-.|.+.=.
T Consensus 219 ~~ig~TpMiG~nD~~~----------e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 219 AMIGVTPMIGVNDVGS----------EVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHccccccccccCCCC----------ceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 4589999999996322 136789999999999998876 888988643
No 54
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=23.62 E-value=3.6e+02 Score=22.78 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=50.3
Q ss_pred hHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCCHH
Q 037212 143 MRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGAD 222 (551)
Q Consensus 143 ~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~~g~~i~~wElGNEp~~~~~~~~~ta~ 222 (551)
.+.++.++++.++.|++..|.+.-. | ..+-.+.++...+. .|||||--+.+..-...+.+
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~--------------~-~~~~~~~l~~l~~~-----G~ei~~H~~~H~~~~~~~~~ 76 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS--------------W-VERYPDQLRELAAA-----GHEIGNHGWSHPNLSTLSPE 76 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH--------------H-HHHHHHHHHHHHHT-----T-EEEEE-SSSSCGGGS-HH
T ss_pred hhhHHHHHHHHHhcccceeeeeccc--------------c-cccccccchhHHHH-----HHHHHhcCCcccccccCCHH
Confidence 4567999999999999999977642 1 22223444544333 47889887764333467889
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 037212 223 QYASDVDRLQSIVQNIYK 240 (551)
Q Consensus 223 ~Ya~d~~~~~~~~~~~~~ 240 (551)
+..+++.+-++.|++...
T Consensus 77 ~~~~ei~~~~~~l~~~~g 94 (123)
T PF01522_consen 77 ELRREIERSREILEEITG 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999998754
No 55
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=22.23 E-value=52 Score=29.32 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHcCCCeEecCCccceeeEee
Q 037212 85 LGNPILLKAVKAFSPLKIRMGGTLQDKAVYE 115 (551)
Q Consensus 85 l~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~ 115 (551)
.++-+|....++||| |||=+=+..|+++||
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 34 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFD 34 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeee
Confidence 445678888888987 999999999999997
No 56
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=22.16 E-value=7.8e+02 Score=24.41 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCCh---HHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCCHHH
Q 037212 147 DELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDS---SNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQ 223 (551)
Q Consensus 147 d~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~---~~A~~~l~y~~~~g~~i~~wElGNEp~~~~~~~~~ta~~ 223 (551)
.++-..++++|.. |+.+|+++.- ..|+. .+|..+++|+..-|-+-.-..==|. +++.+.....++
T Consensus 52 a~vka~Aek~Gl~-IvSINAlypF---------n~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd--~s~~~~~vr~~~ 119 (272)
T COG4130 52 AEVKALAEKAGLT-IVSINALYPF---------NEWTEERVAEARGLADYAAACGAKALVLCPLND--GSWPGTAVRRED 119 (272)
T ss_pred HHHHHHHHHcCcE-EEEeeccccc---------cccChHHHHHHHHHHHHHHhcCCceEEEEeccC--CCCCCcccchHH
Confidence 5667788999986 5689998763 34654 5688899999876665323332333 444456677788
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcEEEccCCCC-----ChhhHHHHHhhCCC
Q 037212 224 YASDVDRLQSIVQNIYKGFKIKPLIIAPGGFF-----DANWFKEFIDKTPN 269 (551)
Q Consensus 224 Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~-----~~~w~~~fL~~~g~ 269 (551)
...-.++++-++++..- .-++-|=++. ...|-.+.+.++++
T Consensus 120 lv~AlkaLkpil~~~gi-----~GLVEPLGF~~csLRsk~eA~~aI~aa~g 165 (272)
T COG4130 120 LVEALKALKPILDEYGI-----TGLVEPLGFRVCSLRSKAEAAEAIRAAGG 165 (272)
T ss_pred HHHHHHHhhHHHHHhCc-----cccccccCchhhhhhhHHHHHHHHHHhCC
Confidence 88888888888877521 1344454442 23566666666554
No 57
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.91 E-value=2.5e+02 Score=30.90 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCCeEecCCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecC
Q 037212 88 PILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNAL 167 (551)
Q Consensus 88 ~~L~~l~k~L~p~~LRiGG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~ 167 (551)
+.=+.|++.+|--..|++=.++= ++-.+.... | |+. | -...+++.+=|.+.|.+++++|.=-
T Consensus 62 keDi~L~~emG~~~~R~SI~WsR--IfP~g~~~e---~---N~~---g-------l~fY~~l~del~~~gIep~vTL~Hf 123 (460)
T COG2723 62 KEDIALAKEMGLNAFRTSIEWSR--IFPNGDGGE---V---NEK---G-------LRFYDRLFDELKARGIEPFVTLYHF 123 (460)
T ss_pred HHHHHHHHHcCCCEEEeeeeEEE--eecCCCCCC---c---CHH---H-------HHHHHHHHHHHHHcCCEEEEEeccc
Confidence 34478899999999998655432 332222111 1 111 1 1235888889999999999998731
Q ss_pred CCccccCCCCCCCCCChHHHH-HHHHHHH----hcCCcceeeeeeccCCC
Q 037212 168 RGRIIQSDGSARGAWDSSNAE-SLMRYTV----NKGYKIYGWELGNELSG 212 (551)
Q Consensus 168 ~~~~~~~~~~~~~~W~~~~A~-~~l~y~~----~~g~~i~~wElGNEp~~ 212 (551)
.-..-.. ..-|.|...+.. .+++||+ ..+..|++|-.=|||+.
T Consensus 124 d~P~~L~--~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~ 171 (460)
T COG2723 124 DLPLWLQ--KPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNV 171 (460)
T ss_pred CCcHHHh--hccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhh
Confidence 1100011 112578666644 5688873 57889999999999985
No 58
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=21.73 E-value=2.9e+02 Score=25.87 Aligned_cols=65 Identities=14% Similarity=0.009 Sum_probs=40.8
Q ss_pred ccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCC---CC---ChHHHHHHHHHHHhcCCcceeeeee
Q 037212 140 CLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARG---AW---DSSNAESLMRYTVNKGYKIYGWELG 207 (551)
Q Consensus 140 ~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~---~W---~~~~A~~~l~y~~~~g~~i~~wElG 207 (551)
.+++++|++.++-.++.|.+-++--..+.+....- +... .| ...--..+++.|.+.|.+| ...|+
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~y--ps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv-~~Gl~ 86 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFY--PSKLSPGGFYMPPVDLLEMILDAADKYGMKV-FVGLY 86 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccC--CccccCccccCCcccHHHHHHHHHHHcCCEE-EEeCC
Confidence 58899999999999999998777666554431110 0000 00 0112445667778889888 66665
No 59
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=21.37 E-value=2.1e+02 Score=30.34 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHcCCCeEec-CCccceeeEeecCCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEE
Q 037212 82 NLDLGNPILLKAVKAFSPLKIRM-GGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVV 160 (551)
Q Consensus 82 ~~~l~~~~L~~l~k~L~p~~LRi-GG~~~D~~~y~~~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ 160 (551)
++.|....-..+++. ..-||+ .||..| .|..+.+. -++.+.++.+.|++.|..+
T Consensus 80 DIHFd~~lAl~a~~~--v~kiRINPGNi~~--~~~~~~g~---------------------~~~~~~~vv~~ake~~ipI 134 (359)
T PF04551_consen 80 DIHFDYRLALEAIEA--VDKIRINPGNIVD--EFQEELGS---------------------IREKVKEVVEAAKERGIPI 134 (359)
T ss_dssp EESTTCHHHHHHHHC---SEEEE-TTTSS------SS-SS----------------------HHHHHHHHHHHHHHT-EE
T ss_pred ecCCCHHHHHHHHHH--hCeEEECCCcccc--cccccccc---------------------hHHHHHHHHHHHHHCCCCE
Confidence 466776665666665 889999 999888 33322110 1356799999999999999
Q ss_pred EEEeecCCC
Q 037212 161 TFGLNALRG 169 (551)
Q Consensus 161 ifglN~~~~ 169 (551)
=+|+|.++-
T Consensus 135 RIGvN~GSL 143 (359)
T PF04551_consen 135 RIGVNSGSL 143 (359)
T ss_dssp EEEEEGGGS
T ss_pred EEecccccC
Confidence 999999754
No 60
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=20.11 E-value=1.6e+02 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.494 Sum_probs=28.4
Q ss_pred ccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHH
Q 037212 140 CLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTV 195 (551)
Q Consensus 140 ~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~ 195 (551)
.|+++.|..|.+|++.+ +-++ ++.+..++| |.---++++|++
T Consensus 76 ~IskD~W~~~l~F~~~~------~~dl-------s~Yde~~AW-P~liDeFVe~~r 117 (117)
T PF03556_consen 76 AISKDTWNQFLDFFKTV------DEDL-------SNYDEEGAW-PSLIDEFVEWLR 117 (117)
T ss_dssp EEEHHHHHHHHHHHHH-------HCCH-------CC--TTSSS--HHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHhc------Cccc-------cCCCCCCCC-cHHHHHHHHHhC
Confidence 69999999999999987 2122 222446889 777778888763
Done!