BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037213
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S5L|C Chain C, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|CC Chain c, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1W5C|C Chain C, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|I Chain I, Photosystem Ii From Thermosynechococcus Elongatus
pdb|2AXT|C Chain C, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|CC Chain c, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
Length = 473
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGY------------- 49
G+V+DTFP+ + V HLI S +L F +YHA G ET EE SFFGY
Sbjct: 103 GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILG 162
Query: 50 ----------------TLYFRDLYDSWAPRDGE 66
++F LYD+WAP G+
Sbjct: 163 FHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGD 195
>pdb|3KZI|C Chain C, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|C Chain C, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|P Chain P, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4IXQ|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 461
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGY------------- 49
G+V+DTFP+ + V HLI S +L F +YHA G ET EE SFFGY
Sbjct: 91 GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILG 150
Query: 50 ----------------TLYFRDLYDSWAPRDGE 66
++F LYD+WAP G+
Sbjct: 151 FHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGD 183
>pdb|3ARC|C Chain C, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|CC Chain c, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 455
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGY------------- 49
G+V+DTFP+ + V HLI S +L F +YHA G ET EE SFFGY
Sbjct: 85 GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILG 144
Query: 50 ----------------TLYFRDLYDSWAPRDGE 66
++F LYD+WAP G+
Sbjct: 145 FHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGD 177
>pdb|3A0B|C Chain C, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|CC Chain c, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|C Chain C, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|CC Chain c, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 447
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGY------------- 49
G+V+DTFP+ + V HLI S +L F +YHA G ET EE SFFGY
Sbjct: 77 GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILG 136
Query: 50 ----------------TLYFRDLYDSWAPRDGE 66
++F LYD+WAP G+
Sbjct: 137 FHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGD 169
>pdb|1IZL|C Chain C, Crystal Structure Of Photosystem Ii
pdb|1IZL|M Chain M, Crystal Structure Of Photosystem Ii
Length = 473
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGY------------- 49
G+V+DTFP+ + V HLI S +L F +YHA G ET EE SFFGY
Sbjct: 103 GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILG 162
Query: 50 ----------------TLYFRDLYDSWAPRDGE 66
++F LYD+WAP G+
Sbjct: 163 FHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGD 195
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 38 ETFEESFSFFGYTLYFRDLYDSWAP 62
ETF+E F+F G TL RD W P
Sbjct: 202 ETFDERFAFVGPTLTGRDGQPGWQP 226
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 36 GLETFEESF----SFFGYTLYFRDLYDSWAPRDGERLEKLPTQRLV 77
GLET ++F +GY F Y +W P E +E L R++
Sbjct: 170 GLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEXLEQLRVL 215
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 36 GLETFEESF----SFFGYTLYFRDLYDSWAPRDGERLEKLPTQRLV 77
GLET ++F +GY F Y +W P E +E L R++
Sbjct: 186 GLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.150 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,642,592
Number of Sequences: 62578
Number of extensions: 98280
Number of successful extensions: 212
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 13
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)