Query 037213
Match_columns 84
No_of_seqs 106 out of 180
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 09:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00035 psbC photosystem II 4 100.0 2.1E-34 4.5E-39 234.2 3.6 82 2-83 102-213 (473)
2 TIGR01153 psbC photosystem II 100.0 3.5E-34 7.5E-39 231.1 3.4 82 2-83 70-181 (432)
3 TIGR03041 PS_antenn_a_b chloro 100.0 2.1E-30 4.5E-35 203.6 3.4 77 2-83 68-178 (321)
4 PF00421 PSII: Photosystem II 99.9 7.2E-29 1.6E-33 200.9 -4.5 79 3-83 73-181 (437)
5 PLN00068 photosystem II CP47 c 99.8 1.2E-20 2.7E-25 154.9 3.1 72 3-75 83-186 (508)
6 CHL00062 psbB photosystem II 4 99.7 7.4E-19 1.6E-23 144.5 3.1 74 2-76 81-187 (504)
7 TIGR03039 PS_II_CP47 photosyst 99.7 1.3E-17 2.8E-22 137.2 2.6 74 3-77 83-188 (504)
8 PHA02580 8 baseplate wedge sub 28.2 27 0.00059 28.4 0.8 42 35-77 208-276 (331)
9 PF00599 Flu_M2: Influenza Mat 26.5 30 0.00065 23.8 0.7 11 13-23 32-42 (97)
10 PF00681 Plectin: Plectin repe 23.4 46 0.00099 18.8 1.0 9 53-61 10-18 (45)
11 PF04036 DUF372: Domain of unk 21.3 28 0.0006 20.3 -0.2 13 24-36 8-20 (38)
12 KOG2618 Uncharacterized conser 20.5 67 0.0015 26.6 1.7 16 51-66 153-168 (366)
13 COG1766 fliF Flagellar basal b 20.0 49 0.0011 28.3 0.9 15 13-27 191-205 (545)
No 1
>CHL00035 psbC photosystem II 44 kDa protein
Probab=100.00 E-value=2.1e-34 Score=234.18 Aligned_cols=82 Identities=54% Similarity=0.933 Sum_probs=78.8
Q ss_pred cceEeeccceeehhHHHHHHHHhhccccchhhhccccchhcccccceeE-----------------------------ee
Q 037213 2 FGKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGYT-----------------------------LY 52 (84)
Q Consensus 2 ~G~i~dtypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~~~~F~~~-----------------------------~~ 52 (84)
-|||+||||||+|||+|||||+|||+|||||++++|++|||+..+|+|| ++
T Consensus 102 gGei~dtypyfvIgvlHLIsSaVlg~Ggl~H~~~gP~~Le~~~~~F~~~W~D~~~lt~ILG~HLi~LG~galllv~kA~~ 181 (473)
T CHL00035 102 GGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDKNKMTTILGIHLILLGIGAFLLVFKALY 181 (473)
T ss_pred CceEeccccchhHHHHHHHHHHHHHHHHhHhhhcCccccccccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHhe
Confidence 3899999999999999999999999999999999999999976788888 89
Q ss_pred eeeeecCCCCCCCc-eeeecCCCCceecceec
Q 037213 53 FRDLYDSWAPRDGE-RLEKLPTQRLVQVFVLV 83 (84)
Q Consensus 53 ~gGiYD~~~~ggG~-R~Vt~ptlnp~~I~~y~ 83 (84)
+|||||+|+|++|+ |+|++|||||.+||+||
T Consensus 182 ~gGlYD~Wap~~G~VR~Vt~PtLnp~~I~~Y~ 213 (473)
T CHL00035 182 FGGVYDTWAPGGGDVRKITNLTLSPSVIFGYL 213 (473)
T ss_pred eCccccCccCCCCceEEeCCCCCChHHhhhhc
Confidence 99999999999999 99999999999999997
No 2
>TIGR01153 psbC photosystem II 44 kDa subunit reaction center protein (also called P6 protein, CP43), bacterial and chloroplast. This model describes the Photosystem II, 44kDa subunit (also called P6 protein, CP43) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is in many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits 44 kDa protein,DI, DII, Cyt.b, Cyt.f, iron-sulphur protein and others. Functinally 44 kDa subunit is imlicated in chlorophyll binding. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis a
Probab=100.00 E-value=3.5e-34 Score=231.14 Aligned_cols=82 Identities=44% Similarity=0.835 Sum_probs=78.8
Q ss_pred cceEeeccceeehhHHHHHHHHhhccccchhhhccccchhcccccceeE-----------------------------ee
Q 037213 2 FGKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGYT-----------------------------LY 52 (84)
Q Consensus 2 ~G~i~dtypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~~~~F~~~-----------------------------~~ 52 (84)
-|||+||||||+||++|||||+|||+|||||++++||+|||+.++|+|| ++
T Consensus 70 gGei~d~ypyfvIgvlHLIsSaVlg~Ggl~H~~~gpe~L~e~~~~F~~eW~D~~~lt~ILGhHLi~LG~gallfv~kA~~ 149 (432)
T TIGR01153 70 GGEVVDIFPFFVVGVLHLISSAVLGFGGIYHSLRGPEKLEEYSSFFGYDWKDKNQMTNILGYHLILLGIGALLLVAKACF 149 (432)
T ss_pred CCeEeccccchhHHHHHHHHHHHHHHHHHHHHhhCHHhhhhcccccCccccChhhhhHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3899999999999999999999999999999999999999987888886 89
Q ss_pred eeeeecCCCCCCCc-eeeecCCCCceecceec
Q 037213 53 FRDLYDSWAPRDGE-RLEKLPTQRLVQVFVLV 83 (84)
Q Consensus 53 ~gGiYD~~~~ggG~-R~Vt~ptlnp~~I~~y~ 83 (84)
+|||||||+|++|+ |+||+|||||.+||+||
T Consensus 150 ~gGlYD~Wap~~G~VR~Vt~PtLnp~~I~~Y~ 181 (432)
T TIGR01153 150 FGGIYDTWAPGGGDVRLITNPTLDPRVIFGYL 181 (432)
T ss_pred eCcccCCCCCCCCceEEeCCCCCChHHhhhhc
Confidence 99999999999999 99999999999999997
No 3
>TIGR03041 PS_antenn_a_b chlorophyll a/b binding light-harvesting protein. This model represents a family of proteins from the Cyanobacteria, closely homologous to and yet distinct from PbsC, a chlorophyll a antenna protein of photosystem II. Members are not univerally present in Cyanobacteria, while the family has several members per genome in Prochlorococcus marinus, with seven members in a strain adapted to low light conditions. These antenna proteins may deliver light energy to photosystem I and/or photosystem II.
Probab=99.96 E-value=2.1e-30 Score=203.64 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=71.1
Q ss_pred cceEeeccceeehhHHHHHHHHhhccccchhhhccccchhcc----cccceeE---------------------------
Q 037213 2 FGKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEES----FSFFGYT--------------------------- 50 (84)
Q Consensus 2 ~G~i~dtypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~----~~~F~~~--------------------------- 50 (84)
-|||+||||||+||++|||||+|||+|||||++++|+||+|+ +++|+||
T Consensus 68 gG~i~d~y~yfvIgvlHLIsSaVlg~Ggl~H~~~gp~~L~~~~~~~~~~F~~dW~d~~~lt~ILG~HL~~lG~~a~lfv~ 147 (321)
T TIGR03041 68 AGVWTDTYPVFVIAILHLISSAVLGAGGLLHSLLFPGDLAESEVPRARKFKLEWDDPDKLTFILGHHLIFLGLGAILFVE 147 (321)
T ss_pred CceEecCcceehhHHHHHHHHHHHHHhHHHhHhcCchhhhhccccccCCccccccCccccchhhhHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999997 5678887
Q ss_pred --eeeeeeecCCCCCCCc-eeeecCCCCceecceec
Q 037213 51 --LYFRDLYDSWAPRDGE-RLEKLPTQRLVQVFVLV 83 (84)
Q Consensus 51 --~~~gGiYD~~~~ggG~-R~Vt~ptlnp~~I~~y~ 83 (84)
+ ++|||||.. |+ |+| +||+||.+||+||
T Consensus 148 ~A~-~~GlYDp~~---G~VR~V-~p~l~p~~i~~y~ 178 (321)
T TIGR03041 148 WAR-WHGIYDPAI---GAVRQV-EYNLNLAMIWNHQ 178 (321)
T ss_pred HHh-hcCeecCCC---CcEEEe-CCCCCHHHHhhcc
Confidence 6 559999854 99 999 9999999999998
No 4
>PF00421 PSII: Photosystem II protein; InterPro: IPR000932 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the intrinsic antenna proteins CP43 (PsbC) and CP47 (PsbB) found in the reaction centre of PSII. These polypeptides bind to chlorophyll a and beta-carotene and pass the excitation energy on to the reaction centre []. This family also includes the iron-stress induced chlorophyll-binding protein CP43' (IsiA), which evolved in cyanobacteria from a PSII protein to cope with light limitations and stress conditions. Under iron-deficient growth conditions, CP43' associates with PSI to form a complex that consists of a ring of 18 or more CP43' molecules around a PSI trimer, which significantly increases the light-harvesting system of PSI. IsiA can also provide photoprotection for PSII [].; GO: 0016168 chlorophyll binding, 0009767 photosynthetic electron transport chain, 0019684 photosynthesis, light reaction, 0009521 photosystem, 0016020 membrane; PDB: 3A0B_b 3A0H_b 3ARC_b 2AXT_B 1S5L_B 3BZ1_B 1IZL_L 1W5C_B 3KZI_B 4FBY_N ....
Probab=99.93 E-value=7.2e-29 Score=200.94 Aligned_cols=79 Identities=38% Similarity=0.760 Sum_probs=76.1
Q ss_pred ceEeeccceeehhHHHHHHHHhhccccchhhhccccchhcccccceeE-----------------------------eee
Q 037213 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGYT-----------------------------LYF 53 (84)
Q Consensus 3 G~i~dtypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~~~~F~~~-----------------------------~~~ 53 (84)
|+|+||||||+||++|||||+|||+|||||++++|++|+|++++|+|+ +++
T Consensus 73 G~ivd~~~~f~igv~HlisSaVlg~Ggl~Ha~~gp~~l~d~~~~F~~~w~d~~~lt~IlG~HL~llG~~~~lfv~~a~~~ 152 (437)
T PF00421_consen 73 GEIVDTYPYFVIGVLHLISSAVLGAGGLFHALIGPETLEDSAPFFGYDWDDPNKLTKILGIHLILLGLGCFLFVAKAMTG 152 (437)
T ss_dssp SCBTTSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGGGBTTTSBHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ceEEcceeeeEeEEeEehHHHHhhhhHHHHHHhhchhhcchhhhhcccCCChHHhhhhhhHhHHHHHHHHHHHHHHHHee
Confidence 789999999999999999999999999999999999999988899988 888
Q ss_pred eeeecCCCCCCCc-eeeecCCCCceecceec
Q 037213 54 RDLYDSWAPRDGE-RLEKLPTQRLVQVFVLV 83 (84)
Q Consensus 54 gGiYD~~~~ggG~-R~Vt~ptlnp~~I~~y~ 83 (84)
+|+||||++ || |+||+|++||.+||+||
T Consensus 153 ~G~yD~w~~--Gdvr~vt~~~l~~~~i~gy~ 181 (437)
T PF00421_consen 153 GGIYDPWAS--GDVRGVTGPTLNPAPIWGYL 181 (437)
T ss_dssp TTSEEEEES--SECCSSSSEEESHHHHHSGG
T ss_pred CCccCCCCC--CCceEeCCCCcChhhccccc
Confidence 999999997 89 99999999999999997
No 5
>PLN00068 photosystem II CP47 chlorophyll A apoprotein; Provisional
Probab=99.80 E-value=1.2e-20 Score=154.89 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=62.5
Q ss_pred ceEeec--cceeehhHHHHHHHHhhccccchhhhccccchhcc--cccceeE--------------------eee-eeee
Q 037213 3 GKVIDT--FPYILSEVFHLICSVILDFDNIYHAFLGLETFEES--FSFFGYT--------------------LYF-RDLY 57 (84)
Q Consensus 3 G~i~dt--ypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~--~~~F~~~--------------------~~~-gGiY 57 (84)
|+|+|+ ||||+||++|||||+|||+|||||++++|.+|.|+ +++|+|| ++| +|||
T Consensus 83 g~v~d~G~~~yfvVgvlHLIsSaVLg~Ggl~H~v~~~~dl~e~~~t~~F~~dlp~ILG~HLillGl~c~lF~a~h~~GlY 162 (508)
T PLN00068 83 GTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLY 162 (508)
T ss_pred ceeccCCcccchhHHHHHHHHHHHHHhhhhhhhhccChhhccccccCccccCCcchhhHhHHHHHHHHHHHHHHHhcccc
Confidence 568996 99999999999999999999999999999888764 6689999 344 5999
Q ss_pred cC--CCCC----CCc-eeeecCCCC
Q 037213 58 DS--WAPR----DGE-RLEKLPTQR 75 (84)
Q Consensus 58 D~--~~~g----gG~-R~Vt~ptln 75 (84)
|| |+|+ +|+ |+| +||++
T Consensus 163 DpgiW~sd~~gl~G~VR~V-~P~~g 186 (508)
T PLN00068 163 GPGIWVSDPYGLTGKVQPV-NPAWG 186 (508)
T ss_pred CCcccccCCcCCCCceEEe-cccCC
Confidence 99 9998 699 999 89433
No 6
>CHL00062 psbB photosystem II 47 kDa protein
Probab=99.74 E-value=7.4e-19 Score=144.48 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=62.2
Q ss_pred cce-Eeec--cceeehhHHHHHHHHhhccccchhhhccccchhcc--cccceeE--------------------ee-eee
Q 037213 2 FGK-VIDT--FPYILSEVFHLICSVILDFDNIYHAFLGLETFEES--FSFFGYT--------------------LY-FRD 55 (84)
Q Consensus 2 ~G~-i~dt--ypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~--~~~F~~~--------------------~~-~gG 55 (84)
+|| |+|| ||||+||++|||||+|||+|||||++++|.+|.|+ +.+|.+| ++ .+|
T Consensus 81 ~Ge~v~d~g~y~yf~VgvlHLIsSaVLg~Ggi~H~~~~~~dl~e~~~~~~~~~dLt~ILG~HLillGl~c~lF~a~h~~G 160 (504)
T CHL00062 81 TGETVTNPGIWSYEGVAGAHIVLSGLCFLAAIWHWVYWDLEIFRDERTGKPSLDLPKIFGIHLFLSGVLCFGFGAFHVTG 160 (504)
T ss_pred ccceeccCCcccchhHHHHHHHHHHHHhhhheeeeeecchhhccccccccccccchhHhHHHHHHHHHHHHHHHHHHcCc
Confidence 576 8877 99999999999999999999999999998888774 4567778 33 459
Q ss_pred eecC--CCCCC----Cc-eeeecCCCCc
Q 037213 56 LYDS--WAPRD----GE-RLEKLPTQRL 76 (84)
Q Consensus 56 iYD~--~~~gg----G~-R~Vt~ptlnp 76 (84)
+||| |+|-- |+ |+| +|++||
T Consensus 161 lYdpgiW~sdpy~l~G~Vr~V-~p~~g~ 187 (504)
T CHL00062 161 LYGPGIWVSDPYGLTGKVQPV-NPAWGA 187 (504)
T ss_pred cccCcccccCcccccceEEEe-cCCCCc
Confidence 9999 75543 78 999 899988
No 7
>TIGR03039 PS_II_CP47 photosystem II chlorophyll-binding protein CP47.
Probab=99.68 E-value=1.3e-17 Score=137.20 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=58.6
Q ss_pred ceEeec--cceeehhHHHHHHHHhhccccchhhhccccchhccc--ccceeE--------------------eee-eeee
Q 037213 3 GKVIDT--FPYILSEVFHLICSVILDFDNIYHAFLGLETFEESF--SFFGYT--------------------LYF-RDLY 57 (84)
Q Consensus 3 G~i~dt--ypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~~--~~F~~~--------------------~~~-gGiY 57 (84)
|+|+|| ||||+||++|||||+|||+|||||++++|++|.++. ..-+++ ++| +|+|
T Consensus 83 G~vvd~g~y~yf~VgvlHLIsSaVLg~Ggi~H~v~~~~dL~~~p~~ge~~~~Lt~ILG~HLillGl~c~lF~a~h~~GlY 162 (504)
T TIGR03039 83 ETGVDPGFWSFEGVAAAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHLSGLF 162 (504)
T ss_pred ceeccCCccceehhHHHHHHHHHHHhhhheeeeeecchhhccCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 679997 999999999999999999999999999999997642 112344 444 4899
Q ss_pred cCC--CCC----CCc-eeeecCCCCce
Q 037213 58 DSW--APR----DGE-RLEKLPTQRLV 77 (84)
Q Consensus 58 D~~--~~g----gG~-R~Vt~ptlnp~ 77 (84)
||. +|- .|+ |+| +|++|+.
T Consensus 163 Dpg~W~sDPy~l~G~Vr~V-~p~~g~~ 188 (504)
T TIGR03039 163 GPGMWVSDPYGLTGHVQPV-APEWGAD 188 (504)
T ss_pred cCcccccCcccceeEEEEe-cCCCCcc
Confidence 993 110 288 999 8999885
No 8
>PHA02580 8 baseplate wedge subunit; Provisional
Probab=28.15 E-value=27 Score=28.44 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=28.0
Q ss_pred ccccchhcccccceeE------------------------eeeeeeecCCCCCCCc---eeeecCCCCce
Q 037213 35 LGLETFEESFSFFGYT------------------------LYFRDLYDSWAPRDGE---RLEKLPTQRLV 77 (84)
Q Consensus 35 ~gp~~L~e~~~~F~~~------------------------~~~gGiYD~~~~ggG~---R~Vt~ptlnp~ 77 (84)
-.|+.|++...+++|| .|.-++|=|-+..-|. ||++ --+||.
T Consensus 208 P~P~el~~dp~rWGy~n~i~w~~~~~~liyr~k~~tlRFrAylds~~Fp~~~lpGNkGfRQiS-ii~nPl 276 (331)
T PHA02580 208 PFPEELIEDPARWGYENNITWYPDDYDLIYRVKANTLRFRAYLDSVYFPEASLPGNKGFRQIS-IILNPL 276 (331)
T ss_pred cChhHhhcChHhhCcccceeeccCCcceEEEEeeeEEeeeeecccccccccccCCCCCceEEE-EecChh
Confidence 4689998887788888 4555677665544444 9984 445553
No 9
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=26.46 E-value=30 Score=23.76 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=8.7
Q ss_pred ehhHHHHHHHH
Q 037213 13 LSEVFHLICSV 23 (84)
Q Consensus 13 vIgvlHLIsSa 23 (84)
+||++|||.=.
T Consensus 32 IiGILHLiLWI 42 (97)
T PF00599_consen 32 IIGILHLILWI 42 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999644
No 10
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=23.37 E-value=46 Score=18.80 Aligned_cols=9 Identities=11% Similarity=0.018 Sum_probs=7.2
Q ss_pred eeeeecCCC
Q 037213 53 FRDLYDSWA 61 (84)
Q Consensus 53 ~gGiYD~~~ 61 (84)
.|||.||..
T Consensus 10 ~gGiidp~t 18 (45)
T PF00681_consen 10 TGGIIDPET 18 (45)
T ss_dssp TTSEEETTT
T ss_pred eeeEEeCCC
Confidence 478999976
No 11
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=21.28 E-value=28 Score=20.33 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=10.6
Q ss_pred hhccccchhhhcc
Q 037213 24 ILDFDNIYHAFLG 36 (84)
Q Consensus 24 Vlg~GglyHs~~g 36 (84)
=.-+|+|||.+.|
T Consensus 8 GIklGaLyHQF~G 20 (38)
T PF04036_consen 8 GIKLGALYHQFVG 20 (38)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcC
Confidence 3467999999988
No 12
>KOG2618 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.47 E-value=67 Score=26.63 Aligned_cols=16 Identities=31% Similarity=0.947 Sum_probs=14.2
Q ss_pred eeeeeeecCCCCCCCc
Q 037213 51 LYFRDLYDSWAPRDGE 66 (84)
Q Consensus 51 ~~~gGiYD~~~~ggG~ 66 (84)
++..||||.|-+-|||
T Consensus 153 L~mAglfD~wE~egGD 168 (366)
T KOG2618|consen 153 LFMAGLFDYWEKEGGD 168 (366)
T ss_pred eEeeeehheecccCCc
Confidence 7788999999987887
No 13
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=20.01 E-value=49 Score=28.34 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=13.2
Q ss_pred ehhHHHHHHHHhhcc
Q 037213 13 LSEVFHLICSVILDF 27 (84)
Q Consensus 13 vIgvlHLIsSaVlg~ 27 (84)
|.|+.|||||+|-|+
T Consensus 191 V~aI~~LVs~aVpgL 205 (545)
T COG1766 191 VRAIVHLVSSAVPGL 205 (545)
T ss_pred HHHHHHHHHhhcCCC
Confidence 578999999999886
Done!