Query 037213
Match_columns 84
No_of_seqs 106 out of 180
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_C Photosystem II core lig 100.0 7.9E-34 2.7E-38 228.9 -0.2 81 3-83 85-195 (455)
2 3arc_B Photosystem II core lig 99.8 2.9E-20 9.9E-25 151.6 1.1 72 3-76 81-186 (504)
3 3lbw_A M2 protein; proton chan 69.4 1.4 4.9E-05 22.5 0.7 9 13-21 8-16 (23)
4 3bkd_A Transmembrane domain of 64.5 2 7E-05 22.4 0.7 9 13-21 11-19 (26)
5 2ljb_A M2 protein, BM2 protein 53.2 4.5 0.00015 22.5 0.8 10 12-21 14-23 (35)
6 2kih_A Matrix protein 2; S31N, 49.2 5.1 0.00017 23.1 0.7 10 13-22 15-24 (43)
7 2nr1_A NR1 M2, M2; receptor, s 39.9 10 0.00035 19.9 0.9 20 16-35 6-25 (27)
8 2ak0_A Alpha-conotoxin MII; al 15.4 71 0.0024 16.3 1.3 15 16-30 7-21 (26)
9 1t6u_A Superoxide dismutase [N 13.7 44 0.0015 22.6 0.2 6 55-60 7-12 (117)
10 1yj7_A ESCJ; mixed alpha/beta, 13.2 74 0.0025 21.9 1.3 15 13-27 140-154 (171)
No 1
>3arc_C Photosystem II core light harvesting protein CP43; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_C* 1s5l_C* 1w5c_C* 2axt_C* 3bz2_C* 3prq_C* 3kzi_C* 3prr_C* 3a0b_C* 3a0h_C* 1izl_C*
Probab=99.97 E-value=7.9e-34 Score=228.88 Aligned_cols=81 Identities=47% Similarity=0.892 Sum_probs=78.0
Q ss_pred ceEeeccceeehhHHHHHHHHhhccccchhhhccccchhcccccceeE-----------------------------eee
Q 037213 3 GKVIDTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEESFSFFGYT-----------------------------LYF 53 (84)
Q Consensus 3 G~i~dtypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~~~~F~~~-----------------------------~~~ 53 (84)
|||+||||||+||++|||||+|||+|||||++++||+|||+.++|+|| +++
T Consensus 85 GeivdtypyfvIgvlHLIsSaVLg~Ggi~H~~~gpe~L~e~~~~F~~eW~d~~~lt~ILG~HLilLG~g~~lfv~kA~~~ 164 (455)
T 3arc_C 85 GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFF 164 (455)
T ss_dssp GCBCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSCSTTTCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEecccceeehhHHHHHHHHHHHhhHhhhhhcCchhhcccccccCcccCChHHhhHHHHHHHHHHHHHHHHHHhhHhee
Confidence 899999999999999999999999999999999999999987789988 789
Q ss_pred eeeecCCCCCCCc-eeeecCCCCceecceec
Q 037213 54 RDLYDSWAPRDGE-RLEKLPTQRLVQVFVLV 83 (84)
Q Consensus 54 gGiYD~~~~ggG~-R~Vt~ptlnp~~I~~y~ 83 (84)
|||||||+|++|+ |+|++|||||.+||+|+
T Consensus 165 gGlYD~Wa~~~G~VR~Vt~ptLnp~~I~~Y~ 195 (455)
T 3arc_C 165 GGLYDTWAPGGGDVRVITNPTLDPRVIFGYL 195 (455)
T ss_dssp SCEEETTCTTSCEEECCCSCCCCHHHHHHHH
T ss_pred CccccCCcCCCCcEEEeCCCCCChHHhhccc
Confidence 9999999999999 99999999999999995
No 2
>3arc_B Photosystem II core light harvesting protein CP47; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Probab=99.77 E-value=2.9e-20 Score=151.62 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred ceE-e--eccceeehhHHHHHHHHhhccccchhhhccccchhcc--cccceeE---------------------eeeeee
Q 037213 3 GKV-I--DTFPYILSEVFHLICSVILDFDNIYHAFLGLETFEES--FSFFGYT---------------------LYFRDL 56 (84)
Q Consensus 3 G~i-~--dtypyfvIgvlHLIsSaVlg~GglyHs~~gp~~L~e~--~~~F~~~---------------------~~~gGi 56 (84)
||| + |+||||+||++|||||+|||+|||||++++|++|.++ +.+|.+| ++.+|+
T Consensus 81 Gevv~~~~~ypyfvIgvlHLIsSaVLg~Ggi~H~l~~~~dl~~~~~~~~f~~dlt~ILGiHLilLGlg~~lf~a~h~~Gl 160 (504)
T 3arc_B 81 GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL 160 (504)
T ss_dssp SCCSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGBCTTTCSBCCCHHHHHHHHHHHHHHHHHHHHHTTTTST
T ss_pred ceEeecCCcccEEeehHHHHHHHHHHhhhhhheeeccchhhcCCcccccchhhhhHHHhHHHHHHHHHHHHHHHHhcccc
Confidence 566 4 4599999999999999999999999999999999875 5678888 345689
Q ss_pred ec-------CCCCCCCc-eeeecCCCCc
Q 037213 57 YD-------SWAPRDGE-RLEKLPTQRL 76 (84)
Q Consensus 57 YD-------~~~~ggG~-R~Vt~ptlnp 76 (84)
|| ||++ +|+ |+| +||+||
T Consensus 161 YdpgiW~sD~~~~-~G~VR~V-~pt~g~ 186 (504)
T 3arc_B 161 FGPGMWVSDPYGL-TGSVQPV-APEWGP 186 (504)
T ss_dssp TSCCEEECCTTSS-SCEEECC-CCCCSG
T ss_pred ccCCccccCCCCC-CccEEEe-cCCCCC
Confidence 94 4544 788 999 899665
No 3
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=69.41 E-value=1.4 Score=22.48 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=7.8
Q ss_pred ehhHHHHHH
Q 037213 13 LSEVFHLIC 21 (84)
Q Consensus 13 vIgvlHLIs 21 (84)
+||++|||.
T Consensus 8 iigIlHLiL 16 (23)
T 3lbw_A 8 IIAILHLIL 16 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 689999985
No 4
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=64.53 E-value=2 Score=22.45 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=7.7
Q ss_pred ehhHHHHHH
Q 037213 13 LSEVFHLIC 21 (84)
Q Consensus 13 vIgvlHLIs 21 (84)
+||++|||.
T Consensus 11 iiGilHLiL 19 (26)
T 3bkd_A 11 IMGILHLIL 19 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 589999985
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=53.19 E-value=4.5 Score=22.47 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=8.4
Q ss_pred eehhHHHHHH
Q 037213 12 ILSEVFHLIC 21 (84)
Q Consensus 12 fvIgvlHLIs 21 (84)
.+||++|||.
T Consensus 14 ~IigiLHlil 23 (35)
T 2ljb_A 14 SIIGILHFIA 23 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4689999985
No 6
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=49.18 E-value=5.1 Score=23.05 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=8.1
Q ss_pred ehhHHHHHHH
Q 037213 13 LSEVFHLICS 22 (84)
Q Consensus 13 vIgvlHLIsS 22 (84)
+||++|||.=
T Consensus 15 iiGIlHLiLw 24 (43)
T 2kih_A 15 IIGILHLILW 24 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5899999853
No 7
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=39.90 E-value=10 Score=19.95 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHHHhhccccchhhhc
Q 037213 16 VFHLICSVILDFDNIYHAFL 35 (84)
Q Consensus 16 vlHLIsSaVlg~GglyHs~~ 35 (84)
-+||++|+-+.=|-|+||=.
T Consensus 6 ~~~l~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheeccc
Confidence 37999999999999998743
No 8
>2ak0_A Alpha-conotoxin MII; alpha-helix, cyclic backbone; NMR {Synthetic}
Probab=15.44 E-value=71 Score=16.32 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=12.6
Q ss_pred HHHHHHHHhhccccc
Q 037213 16 VFHLICSVILDFDNI 30 (84)
Q Consensus 16 vlHLIsSaVlg~Ggl 30 (84)
|.||=-|-..|+||-
T Consensus 7 vchlehsnlcgagga 21 (26)
T 2ak0_A 7 VCHLEHSNLCGAGGA 21 (26)
T ss_dssp HHHHHTHHHHTTTTT
T ss_pred ceeeecccccccCcc
Confidence 679988999999874
No 9
>1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A
Probab=13.70 E-value=44 Score=22.55 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=5.1
Q ss_pred eeecCC
Q 037213 55 DLYDSW 60 (84)
Q Consensus 55 GiYD~~ 60 (84)
|||||.
T Consensus 7 GIYDp~ 12 (117)
T 1t6u_A 7 GVYDPA 12 (117)
T ss_dssp CCCCTH
T ss_pred CCCCcH
Confidence 899985
No 10
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=13.20 E-value=74 Score=21.91 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=12.6
Q ss_pred ehhHHHHHHHHhhcc
Q 037213 13 LSEVFHLICSVILDF 27 (84)
Q Consensus 13 vIgvlHLIsSaVlg~ 27 (84)
.+++.|||+|+|=|.
T Consensus 140 q~~I~~LVa~SV~gL 154 (171)
T 1yj7_A 140 VIQIKNLVKNSVDDL 154 (171)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCCC
Confidence 468999999999765
Done!