Query 037214
Match_columns 455
No_of_seqs 226 out of 1525
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 5.2E-44 1.8E-48 349.3 21.9 247 10-292 4-256 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 6.3E-44 2.2E-48 350.7 18.7 251 10-294 4-257 (269)
3 2f2c_A Cyclin homolog, V-cycli 100.0 1.1E-42 3.9E-47 338.7 23.1 216 14-247 21-247 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 1.5E-42 5.2E-47 338.4 20.0 218 13-248 19-248 (257)
5 3g33_B CCND3 protein; Ser/Thr 100.0 1E-41 3.5E-46 341.6 23.5 227 6-249 31-268 (306)
6 1f5q_B Gamma herpesvirus cycli 100.0 9E-42 3.1E-46 333.6 19.8 216 11-248 18-242 (252)
7 2w96_A G1/S-specific cyclin-D1 100.0 2.4E-40 8.3E-45 325.1 24.1 221 12-249 23-258 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 2E-39 6.7E-44 321.3 24.3 213 8-247 13-241 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.2E-33 4.2E-38 274.5 16.0 212 25-249 22-252 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 1.1E-32 3.8E-37 268.1 18.2 207 32-249 20-241 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 1.4E-31 4.7E-36 265.3 20.7 202 36-252 37-246 (285)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 1.6E-31 5.4E-36 273.2 11.4 203 36-249 32-248 (358)
13 1zp2_A RNA polymerase II holoe 100.0 1.8E-30 6E-35 249.8 16.0 197 42-252 28-224 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1.6E-28 5.3E-33 247.7 22.1 203 32-250 46-263 (323)
15 1c9b_A General transcription f 99.9 1.2E-23 4.2E-28 198.1 20.3 185 41-247 4-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 7.8E-20 2.7E-24 171.0 20.6 186 40-247 7-194 (200)
17 3k7a_M Transcription initiatio 99.6 2.4E-16 8.2E-21 160.1 5.9 182 43-246 127-320 (345)
18 4bbr_M Transcription initiatio 99.2 1.4E-11 4.7E-16 125.3 7.7 182 43-246 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 97.6 0.00014 4.9E-09 72.1 9.0 107 45-166 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 95.3 0.14 4.9E-06 46.8 11.4 86 155-246 12-97 (200)
21 1c9b_A General transcription f 94.5 0.28 9.6E-06 45.1 11.3 86 155-246 8-93 (207)
22 4bbr_M Transcription initiatio 90.1 1.7 5.8E-05 43.7 10.9 89 152-246 126-214 (345)
23 1zp2_A RNA polymerase II holoe 87.9 4.1 0.00014 38.1 11.3 88 155-247 31-126 (235)
24 3k7a_M Transcription initiatio 83.4 1 3.5E-05 45.1 4.8 88 154-247 128-215 (345)
25 2b9r_A Human cyclin B1; cell c 76.8 20 0.00067 34.2 11.3 88 156-247 42-130 (269)
26 3rgf_B Cyclin-C; protein kinas 76.1 20 0.0007 34.5 11.3 56 156-212 47-102 (285)
27 2ivx_A Cyclin-T2; transcriptio 74.1 8 0.00027 36.4 7.7 57 155-212 34-90 (257)
28 2w96_A G1/S-specific cyclin-D1 73.7 23 0.00079 33.6 10.9 88 157-248 62-150 (271)
29 1jkw_A Cyclin H; cell cycle, c 71.9 31 0.001 33.9 11.6 55 157-212 62-118 (323)
30 2i53_A Cyclin K; cell cycle, t 71.8 9.8 0.00033 35.7 7.7 55 156-211 45-99 (258)
31 1g3n_C V-cyclin; cyclin-depend 71.8 22 0.00074 33.5 10.1 89 156-248 55-144 (257)
32 2pk2_A Cyclin-T1, protein TAT; 69.3 9.6 0.00033 38.3 7.4 57 155-212 41-97 (358)
33 2cch_B Cyclin A2, cyclin-A; co 69.0 24 0.00083 33.2 9.8 88 156-247 43-131 (260)
34 2f2c_A Cyclin homolog, V-cycli 68.7 26 0.00088 32.9 9.9 88 156-247 56-144 (254)
35 1w98_B Cyclin E, G1/S-specific 58.5 60 0.002 31.1 10.5 89 156-248 54-144 (283)
36 3g33_B CCND3 protein; Ser/Thr 57.5 38 0.0013 32.9 9.0 88 156-247 75-163 (306)
37 3o0g_D Cyclin-dependent kinase 44.6 13 0.00043 32.8 2.7 75 43-117 28-107 (149)
38 3h4c_A Transcription factor TF 39.6 94 0.0032 29.3 7.9 150 44-208 14-169 (260)
39 1f5q_B Gamma herpesvirus cycli 38.2 2E+02 0.0067 27.1 10.4 89 156-248 53-142 (252)
40 1unl_D Cyclin-dependent kinase 36.8 19 0.00064 33.1 2.7 32 86-117 119-152 (208)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=5.2e-44 Score=349.28 Aligned_cols=247 Identities=19% Similarity=0.238 Sum_probs=217.9
Q ss_pred CCCcchHHHHHHHHhhhhCCCCCccc---cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCC
Q 037214 10 EPLCEQKPSKFFGIEMHWMPAEGYAE---SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGM 86 (455)
Q Consensus 10 ~~~~~E~l~~Lle~E~~~~p~~~yl~---~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k 86 (455)
.+|.+|++.+|++.|.++.|.++|+. ++++.||.++||||++|+..|+++++|+++||+|+|||++..++++
T Consensus 4 ~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~----- 78 (260)
T 2cch_B 4 PDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLR----- 78 (260)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCH-----
T ss_pred HhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCH-----
Confidence 47899999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHh
Q 037214 87 REDIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGI 165 (455)
Q Consensus 87 ~~~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~ 165 (455)
.++|++|+||||||||+||..+| +.|+ ++.+|+.|+ .++|.+||+.||++|+|+++.|||++|+.+|+..
T Consensus 79 -~~lqlv~~acl~iA~K~ee~~~~~~~d~-------~~i~~~~~~-~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~ 149 (260)
T 2cch_B 79 -GKLQLVGTAAMLLASKFEEIYPPEVAEF-------VYITDDTYT-KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 149 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHHCSSCCCHHHH-------HHHTTSSSC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTT
T ss_pred -HHHhHHHHHHHHHHHHhcccCCCCHHHH-------HHHHcCCcC-HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHH
Confidence 89999999999999999999776 7886 344667777 4599999999999999999999999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHHHhcccc-ccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHH
Q 037214 166 IPIGR-GIKRRTLNEIVIQTQGDIS-FTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTC 243 (455)
Q Consensus 166 ~~~~~-~l~~~al~~LlelsL~d~~-fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~ 243 (455)
++.+. .+...+ +++++.++.++. +++|+||.||||||++|+..++... |...+ .+++|+ ++++|.+|++.|.
T Consensus 150 l~~~~~~~~~~a-~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~---w~~~l-~~~~g~-~~~~i~~~~~~l~ 223 (260)
T 2cch_B 150 QQPANCKVESLA-MFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQS---WPESL-IRKTGY-TLESLKPCLMDLH 223 (260)
T ss_dssp CSSCCHHHHHHH-HHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCC---SCHHH-HHHHCC-CHHHHHHHHHHHH
T ss_pred cCCChHHHHHHH-HHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCc---chHHH-HHHhCc-CHHHHHHHHHHHH
Confidence 98654 788888 999999999999 9999999999999999999998643 55666 778897 9999999999999
Q ss_pred HHHHhhchhhhhhhchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 037214 244 KMCIEKQIMLERDLESADWKKLEEEINRRLETSSSSSSFNSISNRDEED 292 (455)
Q Consensus 244 ~l~~~~~~~~er~~~~~~~~kl~~~i~~r~~~~~sss~f~~is~~~e~~ 292 (455)
+++......+ .+.+..|+++++|..+|..+.++
T Consensus 224 ~~~~~~~~~~----------------~~~i~~Ky~~~~~~~vs~~~~~~ 256 (260)
T 2cch_B 224 QTYLKAPQHA----------------QQSIREKYKNSKYHGVSLLNPPE 256 (260)
T ss_dssp HHHHHGGGSS----------------CCHHHHHHTSGGGTTGGGSCCCS
T ss_pred HHHHhcCCcc----------------hHHHHHHHCcccccceeCCCCcc
Confidence 9886543221 12234578899999999977554
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=6.3e-44 Score=350.74 Aligned_cols=251 Identities=19% Similarity=0.202 Sum_probs=219.8
Q ss_pred CCCcchHHHHHHHHhhhhCCCCCccc--cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCc
Q 037214 10 EPLCEQKPSKFFGIEMHWMPAEGYAE--SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMR 87 (455)
Q Consensus 10 ~~~~~E~l~~Lle~E~~~~p~~~yl~--~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~ 87 (455)
.+|.+|++.+|++.|.++.|+++|+. ++++.||.+++|||.+|+.+|+++++|+++||+|+|||++..++++
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~------ 77 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPK------ 77 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCG------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcH------
Confidence 46889999999999999999999997 8999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhc
Q 037214 88 EDIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGII 166 (455)
Q Consensus 88 ~~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~ 166 (455)
.++|++|+||||||||+||..+| +.|+ ++.+|+.|+ .++|.+||+.||++|+|+++.|||++|+.+|+...
T Consensus 78 ~~lqlv~~acL~iA~K~eE~~~p~~~d~-------~~~~~~~~~-~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~ 149 (269)
T 2b9r_A 78 KMLQLVGVTAMFIASKYEEMYPPEIGDF-------AFVTDNTYT-KHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIG 149 (269)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCCCHHHH-------HHHTCSSSC-HHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSS
T ss_pred HHhhHHHHHHHHHHHhcccccCccHHHH-------HHHhcCCCC-HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 99999999999999999999776 7886 445677777 45999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 037214 167 PIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMC 246 (455)
Q Consensus 167 ~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~ 246 (455)
+.+..+...+ +++++.++.++.|++|+||.||||||++|+..++..+ |...+ .+++|+ ++++|.+|++.|.+++
T Consensus 150 ~~~~~~~~~a-~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~---w~~~l-~~~tg~-~~~~l~~~~~~l~~~~ 223 (269)
T 2b9r_A 150 EVDVEQHTLA-KYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGE---WTPTL-QHYLSY-TEESLLPVMQHLAKNV 223 (269)
T ss_dssp CCCHHHHHHH-HHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCC---SCTTH-HHHSCC-CSSTTTTHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCC---CCHHH-HHHHCC-CHHHHHHHHHHHHHHH
Confidence 8888888888 9999999999999999999999999999999998765 44555 778897 9999999999999988
Q ss_pred HhhchhhhhhhchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 037214 247 IEKQIMLERDLESADWKKLEEEINRRLETSSSSSSFNSISNRDEEDDP 294 (455)
Q Consensus 247 ~~~~~~~er~~~~~~~~kl~~~i~~r~~~~~sss~f~~is~~~e~~~~ 294 (455)
....... .+ .+.++.|+++++|..+|..+..+.+
T Consensus 224 ~~~~~~~---------~~-----~~ai~~Ky~~~~~~~vs~~~~~~~~ 257 (269)
T 2b9r_A 224 VMVNQGL---------TK-----HMTVKNKYATSKHAKISTLPQLNSA 257 (269)
T ss_dssp HHTTTSC---------CS-----CCHHHHHTTSGGGTTGGGSSCCSGG
T ss_pred HHhcCCC---------cc-----hHHHHHHhcchhhCcccCCCCCChH
Confidence 6543321 00 1234558899999999998766554
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.1e-42 Score=338.73 Aligned_cols=216 Identities=11% Similarity=0.157 Sum_probs=190.9
Q ss_pred chHHHHHHHHhhhhCCCCCccc----cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccc
Q 037214 14 EQKPSKFFGIEMHWMPAEGYAE----SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMRED 89 (455)
Q Consensus 14 ~E~l~~Lle~E~~~~p~~~yl~----~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~ 89 (455)
+|++. |+++|.++.|+++|+. ++++.||.++||||++|+.+|+++++|+++||+|+|||++...+++ .+
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~------~~ 93 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK------KT 93 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT------TT
T ss_pred HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH------HH
Confidence 77899 9999999999999974 7999999999999999999999999999999999999999999998 89
Q ss_pred hhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCC
Q 037214 90 IVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPI 168 (455)
Q Consensus 90 LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~ 168 (455)
+|++|+||||||||+||..+| +.|+ ++.+++.|+. ++|.+||+.||++|+|+++.|||++|+.+|++.++.
T Consensus 94 lqLv~~acl~iA~K~eE~~~p~~~d~-------~~~~~~~~~~-~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~ 165 (254)
T 2f2c_A 94 LQKIGAACVLIGSKIRTVKPMTVSKL-------TYLSCDCFTN-LELINQEKDILEALKWDTEAVLATDFLIPLCNALKI 165 (254)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHH-------STTC---CCH-HHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcccCCCCHHHH-------HHHhCCCCCH-HHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC
Confidence 999999999999999999876 7886 4556777774 499999999999999999999999999999999987
Q ss_pred CHH----HHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCC--chhhHHHHHHHHcCCCCHHHHHHHHHHH
Q 037214 169 GRG----IKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQ--YYREKENMIRRVTKYVDEVDLEACLEDT 242 (455)
Q Consensus 169 ~~~----l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~--~~~w~~~Ll~~~s~yv~~~~L~~C~~~L 242 (455)
+.. +...+ .++++.++.++.|++|+||.||||||++|+...+..+ |..|...+ .+++|+ ++++|.+|++.|
T Consensus 166 ~~~~~~~~~~~a-~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l-~~~tg~-~~~~l~~c~~~i 242 (254)
T 2f2c_A 166 PEDLWPQLYEAA-STTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDL-SSILNF-STNTVRTVKDQV 242 (254)
T ss_dssp CGGGHHHHHHHH-HHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHH-HHHHTC-CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHH-HHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH-HHHHCc-CHHHHHHHHHHH
Confidence 533 34567 8999999999999999999999999999999864433 33346777 889997 999999999999
Q ss_pred HHHHH
Q 037214 243 CKMCI 247 (455)
Q Consensus 243 ~~l~~ 247 (455)
.+++.
T Consensus 243 ~~~~~ 247 (254)
T 2f2c_A 243 SEAFS 247 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.5e-42 Score=338.38 Aligned_cols=218 Identities=15% Similarity=0.185 Sum_probs=194.3
Q ss_pred cchHHHHHHHHhhhhCCCCCccc----cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCcc
Q 037214 13 CEQKPSKFFGIEMHWMPAEGYAE----SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMRE 88 (455)
Q Consensus 13 ~~E~l~~Lle~E~~~~p~~~yl~----~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~ 88 (455)
++|++ +|+++|.++.|+++|+. ++++.||.++||||++|+.+|+++++|+++||+|+|||++...+++ .
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~------~ 91 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSK------E 91 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCH------H
T ss_pred HHHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCH------H
Confidence 37788 99999999999999973 7999999999999999999999999999999999999999999998 9
Q ss_pred chhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcC
Q 037214 89 DIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIP 167 (455)
Q Consensus 89 ~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~ 167 (455)
++|++|+||||||||+||..+| +.|+ ++.+|+.|+. ++|.+||+.||++|+|+++.|||++|+.+|+..++
T Consensus 92 ~lqLv~~acl~iA~K~eE~~~p~~~d~-------~~~~~~~~~~-~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~ 163 (257)
T 1g3n_C 92 HFQKTGSACLLVASKLRSLTPISTSSL-------CYAAADSFSR-QELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLV 163 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCHHHH-------HHHTTTCSCH-HHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccccCCCHHHH-------HHHHCCCCCH-HHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC
Confidence 9999999999999999999876 7886 5556777774 59999999999999999999999999999999987
Q ss_pred CCH----HHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCC---chhhHHHHHHHHcCCCCHHHHHHHHH
Q 037214 168 IGR----GIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQ---YYREKENMIRRVTKYVDEVDLEACLE 240 (455)
Q Consensus 168 ~~~----~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~---~~~w~~~Ll~~~s~yv~~~~L~~C~~ 240 (455)
.+. .+...+ .++++.++.++.|++|+||.||||||++|+..++..+ .+.|...+ .+++|+ ++++|.+|++
T Consensus 164 ~~~~~~~~~~~~a-~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l-~~~t~~-~~~~l~~c~~ 240 (257)
T 1g3n_C 164 GGSQHLDFWHHEV-NTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQL-ASILGC-DVSVLQAAVE 240 (257)
T ss_dssp CSSTTHHHHHHHH-HHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHH-HHHHTC-CHHHHHHHHH
T ss_pred CChhHHHHHHHHH-HHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHH-HHHHCc-CHHHHHHHHH
Confidence 642 234557 8999999999999999999999999999999887421 24587777 778997 9999999999
Q ss_pred HHHHHHHh
Q 037214 241 DTCKMCIE 248 (455)
Q Consensus 241 ~L~~l~~~ 248 (455)
.|.+++..
T Consensus 241 ~i~~l~~~ 248 (257)
T 1g3n_C 241 QILTSVSD 248 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=341.56 Aligned_cols=227 Identities=19% Similarity=0.244 Sum_probs=197.0
Q ss_pred CCCCCCCcchHHHHHHHHhhhhCCCCCccc----cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCcccc
Q 037214 6 EDIPEPLCEQKPSKFFGIEMHWMPAEGYAE----SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPR 81 (455)
Q Consensus 6 ~~~~~~~~~E~l~~Lle~E~~~~p~~~yl~----~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~ 81 (455)
.|+.-.+.+|++++|+++|.++.|+++|+. ++++.||.++|+||++|+.+|+++++|+++||+|||||++...+.+
T Consensus 31 ~dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~ 110 (306)
T 3g33_B 31 PDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRK 110 (306)
T ss_dssp ------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCG
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcH
Confidence 344345778899999999999999999886 7999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHH
Q 037214 82 MLGGMREDIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVE 160 (455)
Q Consensus 82 ~~~~k~~~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~ 160 (455)
+++||+|+||||||||+||..+| +.++ ++.+++.|+. ++|++||+.||++|+|+++.|||++|+.
T Consensus 111 ------~~lqLv~~tcL~lAsK~eE~~p~~~~~l-------~~~~~~~~~~-~~i~~mE~~IL~~L~f~l~~~tp~~fl~ 176 (306)
T 3g33_B 111 ------AQLQLLGAVCMLLASKLRETTPLTIEKL-------CIYTDHAVSP-RQLRDWEVLVLGKLKWDLAAVIAHDFLA 176 (306)
T ss_dssp ------GGHHHHHHHHHHHHHHHHCSSCCCTTHH-------HHHTTTSSCH-HHHHHHHHHHHHHTTTCCCCCCGGGGHH
T ss_pred ------HHHHHHHHHHHHHHHHhccCCCCCHHHH-------HHHhccCccH-HHHHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 99999999999999999999876 6775 5556777774 4999999999999999999999999999
Q ss_pred HHHHhcCCCH----HHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCC-c-hhhHHHHHHHHcCCCCHHH
Q 037214 161 FFVGIIPIGR----GIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQ-Y-YREKENMIRRVTKYVDEVD 234 (455)
Q Consensus 161 ~fl~~~~~~~----~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~-~-~~w~~~Ll~~~s~yv~~~~ 234 (455)
+|+..++.+. .+...+ .++++.++.++.|++|+||.||||||++|+..++..+ | ..|...| .+++|+ ++++
T Consensus 177 ~~l~~l~~~~~~~~~~~~~a-~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L-~~~tg~-~~~~ 253 (306)
T 3g33_B 177 FILHRLSLPRDRQALVKKHA-QTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELL-AGITGT-EVDC 253 (306)
T ss_dssp HHHHTSSCCTTTHHHHHHHH-HHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHH-HHHHTC-CHHH
T ss_pred HHHHHcCCChhHHHHHHHHH-HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHH-HHHHCC-CHHH
Confidence 9999887632 244566 8999999999999999999999999999999998653 2 4566666 779997 9999
Q ss_pred HHHHHHHHHHHHHhh
Q 037214 235 LEACLEDTCKMCIEK 249 (455)
Q Consensus 235 L~~C~~~L~~l~~~~ 249 (455)
|.+|++.|.+++...
T Consensus 254 l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 254 LRACQEQIEAALRES 268 (306)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9e-42 Score=333.64 Aligned_cols=216 Identities=12% Similarity=0.102 Sum_probs=186.6
Q ss_pred CCc-chHHHHHHHHhhhhCCCCCccc-cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCcc
Q 037214 11 PLC-EQKPSKFFGIEMHWMPAEGYAE-SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMRE 88 (455)
Q Consensus 11 ~~~-~E~l~~Lle~E~~~~p~~~yl~-~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~ 88 (455)
+++ ++++.+|+++|.++.| ...+ ++++.||.++||||++|+.+|+++++|+|+||+|+||||+...+++ .
T Consensus 18 ~l~~d~i~~~l~~~E~~~~p--~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~------~ 89 (252)
T 1f5q_B 18 EDCRQMIYRSEREHDARMVG--VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDR------E 89 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCG------G
T ss_pred HHhHHHHHHHHHHHHHHhCc--CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCH------H
Confidence 454 5699999999999998 2334 8999999999999999999999999999999999999999999999 9
Q ss_pred chhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcC
Q 037214 89 DIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIP 167 (455)
Q Consensus 89 ~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~ 167 (455)
++||+|+|||+||||+||..+| +.++ ++.+|+.|+.. +|++||+.||++|+|+++.|||++|+++|++.++
T Consensus 90 ~lqLvg~tcl~iAsK~eE~~p~~~~~l-------~~~~~~~yt~~-~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~ 161 (252)
T 1f5q_B 90 NYQSTAAVALHIAGKVRAYMPIKATQL-------AYLCGGATTAD-KLLTLEVKSLDTLSWVADRCLSTDLICYILHIMH 161 (252)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHH-------HHHHCTTCCHH-HHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHH-------HHHhCCCCCHH-HHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 9999999999999999999876 6775 56678888855 9999999999999999999999999999999987
Q ss_pred CCHH----HHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCC--chhhHHHHHHHHcCCCCHHHHHHHHHH
Q 037214 168 IGRG----IKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQ--YYREKENMIRRVTKYVDEVDLEACLED 241 (455)
Q Consensus 168 ~~~~----l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~--~~~w~~~Ll~~~s~yv~~~~L~~C~~~ 241 (455)
.+.. +...+ .++++.++.|+.|++|+||.|||||+.++. +... ...|...+ .+++|+ ++++|.+|++.
T Consensus 162 ~~~~~~~~~~~~a-~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~~~~~~~~L-~~~t~~-~~~~l~~C~~~ 235 (252)
T 1f5q_B 162 APREDYLNIYNLC-RPKIFCALCDGRSAMKRPVLITLACMHLTM---NQKYDYYENRIDGV-CKSLYI-TKEELHQCCDL 235 (252)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHH-HHHTTC-CHHHHHHHHHH
T ss_pred CCcchHHHHHHHH-HHHHHHHHhchhhhccCHHHHHHHHHHHHh---ccCCCchhhHHHHH-HHHHCc-CHHHHHHHHHH
Confidence 7532 45667 899999999999999999999999965554 3322 12345666 778897 99999999999
Q ss_pred HHHHHHh
Q 037214 242 TCKMCIE 248 (455)
Q Consensus 242 L~~l~~~ 248 (455)
|.++...
T Consensus 236 i~~~l~~ 242 (252)
T 1f5q_B 236 VDIAIVS 242 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.4e-40 Score=325.14 Aligned_cols=221 Identities=24% Similarity=0.330 Sum_probs=193.4
Q ss_pred CcchHHHHHHHHhhhhCCCCCccc----cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCc
Q 037214 12 LCEQKPSKFFGIEMHWMPAEGYAE----SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMR 87 (455)
Q Consensus 12 ~~~E~l~~Lle~E~~~~p~~~yl~----~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~ 87 (455)
..+|++.+|+++|.++.|+++|+. ++++.+|.++|+||++|+.+|+++++|+++||+|+|||++..++++
T Consensus 23 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~------ 96 (271)
T 2w96_A 23 LNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKK------ 96 (271)
T ss_dssp --CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCT------
T ss_pred cHHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCH------
Confidence 367899999999999999999874 8999999999999999999999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhc
Q 037214 88 EDIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGII 166 (455)
Q Consensus 88 ~~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~ 166 (455)
.++|++|+||||||||+||..+| +.++ ++.+|+.|+ +++|.+||+.||++|+|+++.|||++|+.+|+..+
T Consensus 97 ~~lqlv~~acL~iAsK~EE~~p~~~~~~-------~~~~~~~~~-~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l 168 (271)
T 2w96_A 97 SRLQLLGATCMFVASKMKETIPLTAEKL-------CIYTDNSIR-PEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKM 168 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHCSSCCCHHHH-------HHHTTTSSC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHH-------HHHhcCCCC-HHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence 88999999999999999999665 7776 445677777 45999999999999999999999999999999999
Q ss_pred CCCHHH----HHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCC-----CCc-hhhHHHHHHHHcCCCCHHHHH
Q 037214 167 PIGRGI----KRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFN-----DQY-YREKENMIRRVTKYVDEVDLE 236 (455)
Q Consensus 167 ~~~~~l----~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~-----~~~-~~w~~~Ll~~~s~yv~~~~L~ 236 (455)
+.+.+. ...+ .++++.++.|+.|++|+||.||||||++|+..++. ..| ..|...+ .+++|+ ++++|.
T Consensus 169 ~~~~~~~~~~~~~a-~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l-~~~~~v-~~~~l~ 245 (271)
T 2w96_A 169 PEAEENKQIIRKHA-QTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFL-SRVIKC-DPDCLR 245 (271)
T ss_dssp CCCHHHHHHHHHHH-HHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHH-HHHHTS-CHHHHH
T ss_pred CCCchHHHHHHHHH-HHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHH-HHHHCc-CHHHHH
Confidence 876443 3456 88999999999999999999999999999988753 112 2355555 778897 999999
Q ss_pred HHHHHHHHHHHhh
Q 037214 237 ACLEDTCKMCIEK 249 (455)
Q Consensus 237 ~C~~~L~~l~~~~ 249 (455)
+|++.|.+++...
T Consensus 246 ~c~~~i~~l~~~~ 258 (271)
T 2w96_A 246 ACQEQIEALLESS 258 (271)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2e-39 Score=321.32 Aligned_cols=213 Identities=19% Similarity=0.288 Sum_probs=186.4
Q ss_pred CCCCCcchHHHHHHHHhhhhCCCCCccc---cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcC-Ccccccc
Q 037214 8 IPEPLCEQKPSKFFGIEMHWMPAEGYAE---SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISR-NEVPRML 83 (455)
Q Consensus 8 ~~~~~~~E~l~~Lle~E~~~~p~~~yl~---~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~-~~V~~~~ 83 (455)
+.-++.+|++.+|+++|.++.|+++|+. ++++.+|.++++||++|+.+|+++++|+++||+|+|||++. ..+.+
T Consensus 13 l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~-- 90 (283)
T 1w98_B 13 LSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVK-- 90 (283)
T ss_dssp CSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCG--
T ss_pred hhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCH--
Confidence 3335567899999999999999999997 79999999999999999999999999999999999999998 57888
Q ss_pred CCCccchhhhHHHHHHHHhhhccCCCC-hhhhhhccCCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHH
Q 037214 84 GGMREDIVLAADACLTISWSVKSTSFS-YDEFLEADNHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFF 162 (455)
Q Consensus 84 ~~k~~~LQLvgvaCL~IASK~EE~~~P-l~dLqv~~s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~f 162 (455)
+++|++|+||||||||+||..+| +.|+ ++.+|+.|+. ++|.+||+.||++|+|+++.|||++|+.+|
T Consensus 91 ----~~lqlv~~acL~iA~K~eE~~~p~l~~~-------~~i~~~~~~~-~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f 158 (283)
T 1w98_B 91 ----TLLQLIGISSLFIAAKLEEIYPPKLHQF-------AYVTDGACSG-DEILTMELMIMKALKWRLSPLTIVSWLNVY 158 (283)
T ss_dssp ----GGHHHHHHHHHHHHHHHHCSSCCCHHHH-------HHTTTTSSCH-HHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcccCCCcHHHH-------HHHHcCCCCH-HHHHHHHHHHHHHcCCcCCCCCHHHHHHHH
Confidence 99999999999999999999877 7886 4456777774 599999999999999999999999999999
Q ss_pred HHhcCCC-----------HHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCC
Q 037214 163 VGIIPIG-----------RGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVD 231 (455)
Q Consensus 163 l~~~~~~-----------~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~ 231 (455)
+..++.+ ......+ .++++.++.|+.|++|+||.||||||++|+ |.+.+ .+++|+ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l-~~~tg~-~ 225 (283)
T 1w98_B 159 MQVAYLNDLHEVLLPQYPQQIFIQI-AELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELM-QKVSGY-Q 225 (283)
T ss_dssp HHHHTCCSSCCSSSCCSCHHHHHHH-HHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHH-HHHSCC-C
T ss_pred HHHhccCchhhHHHHhhhHHHHHHH-HHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHH-HHHhCC-C
Confidence 9876542 1223345 789999999999999999999999999985 23444 778897 9
Q ss_pred HHHHHHHHHHHHHHHH
Q 037214 232 EVDLEACLEDTCKMCI 247 (455)
Q Consensus 232 ~~~L~~C~~~L~~l~~ 247 (455)
+++|.+|++.|..++.
T Consensus 226 ~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 226 WCDIENCVKWMVPFAM 241 (283)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988775
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.2e-33 Score=274.46 Aligned_cols=212 Identities=14% Similarity=0.165 Sum_probs=173.8
Q ss_pred hhhCCC-CCccc-cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHh
Q 037214 25 MHWMPA-EGYAE-SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISW 102 (455)
Q Consensus 25 ~~~~p~-~~yl~-~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IAS 102 (455)
....|+ .++++ +....+|..+++||.+|+.+|+++++|+++|++|||||++..++.+ .++|++|+|||||||
T Consensus 22 l~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~------~~~qlv~~acL~lA~ 95 (258)
T 2i53_A 22 LAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQ------FPRYVTGACCLFLAG 95 (258)
T ss_dssp GGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTT------SCHHHHHHHHHHHHH
T ss_pred HHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhh------cCHHHHHHHHHHHHH
Confidence 334443 34455 7889999999999999999999999999999999999999999998 899999999999999
Q ss_pred hhccCCCChhhhhhccCCceeecCCccc-----cHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCCCH----HHH
Q 037214 103 SVKSTSFSYDEFLEADNHEYKDTDARVV-----RKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPIGR----GIK 173 (455)
Q Consensus 103 K~EE~~~Pl~dLqv~~s~~~~~td~~yt-----~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~~~----~l~ 173 (455)
|+||..+++.|+... .. .+.+|+.|. .+++|.+||+.||++|+|+++.|||++|+.+|++.++.+. .+.
T Consensus 96 K~eE~~~~l~d~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~ 173 (258)
T 2i53_A 96 KVEETPKKCKDIIKT-AR-SLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLV 173 (258)
T ss_dssp HHTTCCCCHHHHHHH-HH-HHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHH
T ss_pred ccccccccHHHHHHH-HH-HHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHH
Confidence 999975568887431 00 112333342 3569999999999999999999999999999999998865 577
Q ss_pred HHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCC--c------hhhHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 037214 174 RRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQ--Y------YREKENMIRRVTKYVDEVDLEACLEDTCKM 245 (455)
Q Consensus 174 ~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~--~------~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l 245 (455)
+.| +++++.++.++.+++|+||.||+|||++|...++... | ..|...+ +++ +++++|.+|+..|.++
T Consensus 174 ~~A-~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~---~~~-~~~~~l~~~~~~il~l 248 (258)
T 2i53_A 174 QMA-WTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF---VQD-VPVDVLEDICHQILDL 248 (258)
T ss_dssp HHH-HHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT---SSS-CCHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh---ccC-CCHHHHHHHHHHHHHH
Confidence 888 9999999999999999999999999999999887421 1 1232221 345 4999999999999988
Q ss_pred HHhh
Q 037214 246 CIEK 249 (455)
Q Consensus 246 ~~~~ 249 (455)
+...
T Consensus 249 y~~~ 252 (258)
T 2i53_A 249 YSQG 252 (258)
T ss_dssp TSSS
T ss_pred Hhcc
Confidence 7643
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.1e-32 Score=268.06 Aligned_cols=207 Identities=13% Similarity=0.129 Sum_probs=171.9
Q ss_pred Cccc-cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCC
Q 037214 32 GYAE-SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFS 110 (455)
Q Consensus 32 ~yl~-~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~P 110 (455)
++++ +....+|..+++||.+|+.+|+++++|+++|++|+|||++.+++.+ .++|++|+||||||||+||..++
T Consensus 20 ~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~------~~~qlv~~acL~lA~K~EE~p~~ 93 (257)
T 2ivx_A 20 CGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTK------FNKNIISSTALFLAAKVEEQARK 93 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTT------SCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhh------hCHHHHHHHHHHHHhccccCCcC
Confidence 3444 6678999999999999999999999999999999999999999998 89999999999999999999555
Q ss_pred hhhhhhcc-------CCceeecCCccc-cHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037214 111 YDEFLEAD-------NHEYKDTDARVV-RKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPIGRGIKRRTLNEIVI 182 (455)
Q Consensus 111 l~dLqv~~-------s~~~~~td~~yt-~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~~~~l~~~al~~Lle 182 (455)
+.|+.... ..-++.+|+.|. ..++|++||+.||++|+|+++.|||++|+.+|++.++.+..+.+.| +++++
T Consensus 94 l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A-~~~~~ 172 (257)
T 2ivx_A 94 LEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTS-YFMAT 172 (257)
T ss_dssp HHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHH-HHHHH
Confidence 78873210 001233455565 2569999999999999999999999999999999999988998989 99999
Q ss_pred HHhc-cccccCcChHHHHHHHHHHHHHHhCCC-C----chhhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 037214 183 QTQG-DISFTRFLPTVIAASAVFTACRVLFND-Q----YYREKENMIRRVTKYVDEVDLEACLEDTCKMCIEK 249 (455)
Q Consensus 183 lsL~-d~~fl~y~PS~IAAAAI~lA~~~l~~~-~----~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~~~~ 249 (455)
.++. +..+++|+||.||+|||++|...++.. + ...|...+ ..+ +++++|.+|+..|.+++...
T Consensus 173 ~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~---~~~-~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 173 NSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV---DPT-VTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp HHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT---CSS-CCHHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh---CCC-CCHHHHHHHHHHHHHHHHhC
Confidence 9985 455899999999999999999998742 1 12243333 345 49999999999999998643
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.98 E-value=1.4e-31 Score=265.32 Aligned_cols=202 Identities=16% Similarity=0.087 Sum_probs=172.4
Q ss_pred cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCC-hhhh
Q 037214 36 SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFS-YDEF 114 (455)
Q Consensus 36 ~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~P-l~dL 114 (455)
+....+|..+++||.+|+..++|+++|+++|++|+|||++..++.. .++|+||+||||||||+||..+| +.|+
T Consensus 37 ~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~------~~~~lva~acLfLA~K~EE~~~~~~~di 110 (285)
T 3rgf_B 37 EEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKS------IDPVLMAPTCVFLASKVEEFGVVSNTRL 110 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTT------SCHHHHHHHHHHHHHHHTTSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchh------cCHHHHHHHHHHHHHhhhccccccHHHH
Confidence 5567899999999999999999999999999999999999999998 89999999999999999999886 6776
Q ss_pred hhcc-------CCceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 037214 115 LEAD-------NHEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGD 187 (455)
Q Consensus 115 qv~~-------s~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d 187 (455)
.... ..+....+..+. .++|++||+.||++|+|++.++||++|+.+|++.++.+..+.+.| +++++.++.+
T Consensus 111 ~~~~~~~~k~~~~~~~~~~~~~~-~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A-~~~l~~sl~t 188 (285)
T 3rgf_B 111 IAAATSVLKTRFSYAFPKEFPYR-MNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLA-WRIVNDTYRT 188 (285)
T ss_dssp HHHHHHHHHHHCTTTCCSCCCCC-HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHH-HHHHHHHTTS
T ss_pred HHHHHHHHcccccccCchhhHHH-HHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHcc
Confidence 3210 111122122233 569999999999999999999999999999999999888889999 9999999999
Q ss_pred ccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhchh
Q 037214 188 ISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMCIEKQIM 252 (455)
Q Consensus 188 ~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~~~~~~~ 252 (455)
..++.|+||.||+|||++|...++... ..|... .+ ++.++|.+|+..|.+++......
T Consensus 189 ~~~l~~~Ps~IAaAaiylA~~~~~~~~-~~W~~~-----~~-~~~~~l~~~~~~il~ly~~~~~~ 246 (285)
T 3rgf_B 189 DLCLLYPPFMIALACLHVACVVQQKDA-RQWFAE-----LS-VDMEKILEIIRVILKLYEQWKNF 246 (285)
T ss_dssp SHHHHSCHHHHHHHHHHHHHHHTTCCC-HHHHHT-----SC-SCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhccCHHHHHHHHHHHHHHHcCCCh-hhHHHH-----HC-CCHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999988643 345332 35 59999999999999999865543
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=1.6e-31 Score=273.17 Aligned_cols=203 Identities=13% Similarity=0.114 Sum_probs=169.0
Q ss_pred cccHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhh
Q 037214 36 SNKESLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFL 115 (455)
Q Consensus 36 ~it~~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLq 115 (455)
+....+|..+++||.+|+..|+|+++|+++||+|||||++.+++.. .++|+||+||||||||+||..+++.|+.
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~------~~~qlva~acLfLA~K~EE~p~~l~d~v 105 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR------FPGNSVAPAALFLAAKVEEQPKKLEHVI 105 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc------ccHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 5667999999999999999999999999999999999999999998 8999999999999999999965688873
Q ss_pred hcc-------CCceeecCCccc-cHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 037214 116 EAD-------NHEYKDTDARVV-RKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGD 187 (455)
Q Consensus 116 v~~-------s~~~~~td~~yt-~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d 187 (455)
... ..-.+.+++.|. ..++|++||+.||++|+|++.+|||++||.+|+..++.+.++.+.| +++++.++.+
T Consensus 106 ~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A-~~ll~~sl~~ 184 (358)
T 2pk2_A 106 KVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTS-YFMATNSLHL 184 (358)
T ss_dssp TTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHH-HHHHHHHTTT
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhc
Confidence 210 000123455565 2559999999999999999999999999999999999888899989 9999999864
Q ss_pred c-cccCcChHHHHHHHHHHHHHHhCCC-C----chhhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 037214 188 I-SFTRFLPTVIAASAVFTACRVLFND-Q----YYREKENMIRRVTKYVDEVDLEACLEDTCKMCIEK 249 (455)
Q Consensus 188 ~-~fl~y~PS~IAAAAI~lA~~~l~~~-~----~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~~~~ 249 (455)
+ .++.|+||.||+|||++|...++.. + -..|...+ ..+ +++++|.+|+..|.+++...
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~---~~~-vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV---DAT-VTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS---CSS-CCHHHHHHHHHHHHHHTTTC
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH---hcc-CCHHHHHHHHHHHHHHHHhC
Confidence 4 4799999999999999999998732 1 12243332 234 49999999999999988543
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-30 Score=249.83 Aligned_cols=197 Identities=12% Similarity=0.107 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhhhccCCc
Q 037214 42 RKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFLEADNHE 121 (455)
Q Consensus 42 R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLqv~~s~~ 121 (455)
|..+++||.+|+..++++++|+++|++|+|||++..++.. +.++|+||+||||||||+||..+++.|+.....+
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~-----~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~- 101 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEK-----GFSLEALVATCIYLSCKVEECPVHIRTICNEAND- 101 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCC-----CCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc-----ccCHHHHHHHHHHHHhccccCcccHHHHHHHHHH-
Confidence 9999999999999999999999999999999999887764 2679999999999999999986678887321000
Q ss_pred eeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHH
Q 037214 122 YKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAAS 201 (455)
Q Consensus 122 ~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAA 201 (455)
++.....++ .++|.+||+.||++|+|++.++||+.|+.+|++.++.+..+.+.| +++++.++.+..+++|+||.||+|
T Consensus 102 ~~~~~~~~~-~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A-~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 102 LWSLKVKLS-RSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA-WSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp TCCCSSCCC-HHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHH-HHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred Hccchhhcc-HHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHcCCchhccCHHHHHHH
Confidence 110011233 669999999999999999999999999999999988888888889 999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhchh
Q 037214 202 AVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMCIEKQIM 252 (455)
Q Consensus 202 AI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~~~~~~~ 252 (455)
||++|...++.. .+.|... +.+ +++++|.+|++.|.+++......
T Consensus 180 ai~lA~~~~~~~-~~~~~~~----~~~-~~~~~i~~~~~~i~~ly~~~~~~ 224 (235)
T 1zp2_A 180 ALLISCCNDENT-IPKLLDL----IKS-TDAFKVILCVQRIISIYYFEDIE 224 (235)
T ss_dssp HHHHHHTSCTTH-HHHHHHH----CCH-HHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhcCCC-CCCCcch----hhc-CCHHHHHHHHHHHHHHHhhCCcC
Confidence 999999877642 2223222 224 49999999999999998765543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.96 E-value=1.6e-28 Score=247.69 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=170.0
Q ss_pred Cccc-cccHHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCC
Q 037214 32 GYAE-SNKESLRKIAMHQILQISKSNN--LDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTS 108 (455)
Q Consensus 32 ~yl~-~it~~~R~~LVdWL~eV~~~f~--L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~ 108 (455)
+++. +-...+|...++||.+|+..|+ ++++|+++|++|||||++..++.. .++|+||+||||||||+||..
T Consensus 46 ~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~------~~~~lva~acLfLA~K~EE~~ 119 (323)
T 1jkw_A 46 VFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVME------YHPRIIMLTCAFLACKVDEFN 119 (323)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTT------SCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhh------cCHHHHHHHHHHHHHhhhcCC
Confidence 3444 5567899999999999999999 999999999999999999999998 899999999999999999997
Q ss_pred CChhhhhhccCCceeecC---CccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhc-------CCCHHHHHHHHH
Q 037214 109 FSYDEFLEADNHEYKDTD---ARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGII-------PIGRGIKRRTLN 178 (455)
Q Consensus 109 ~Pl~dLqv~~s~~~~~td---~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~-------~~~~~l~~~al~ 178 (455)
+++.++... + ..+ ..|+ .++|++||+.||++|+|++.++||++|+..|+..+ +....+.+.| +
T Consensus 120 ~~l~d~v~~----~-~~~p~~~~~~-~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A-~ 192 (323)
T 1jkw_A 120 VSSPQFVGN----L-RESPLGQEKA-LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTA-D 192 (323)
T ss_dssp CCHHHHGGG----S-SSCHHHHHHH-HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHH-H
T ss_pred CCHHHHHHH----h-ccChhhhHHH-HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHH-H
Confidence 778887321 0 001 1233 56999999999999999999999999999998654 2235677888 9
Q ss_pred HHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHhhc
Q 037214 179 EIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRV--TKYVDEVDLEACLEDTCKMCIEKQ 250 (455)
Q Consensus 179 ~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~--s~yv~~~~L~~C~~~L~~l~~~~~ 250 (455)
++++.++.++.++.|+||.||+|||++|...++.. .+.|...+ .++ +++ +.++|.+|++.|.+++....
T Consensus 193 ~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~-~~~w~~~l-~~~~~~~~-~~~~l~~~~~~i~~l~~~~~ 263 (323)
T 1jkw_A 193 DFLNRIALTDAYLLYTPSQIALTAILSSASRAGIT-MESYLSES-LMLKENRT-CLSQLLDIMKSMRNLVKKYE 263 (323)
T ss_dssp HHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCC-CTTHHHHH-TTSCSSSC-CTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCC-hHHHHHHH-hccccccc-cHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999998853 24577766 333 455 89999999999999987643
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.91 E-value=1.2e-23 Score=198.07 Aligned_cols=185 Identities=14% Similarity=0.158 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhhhccCC
Q 037214 41 LRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFLEADNH 120 (455)
Q Consensus 41 ~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLqv~~s~ 120 (455)
......++|.+++..+++++.|+.+|+.|++||+....+.. .+.+++++||||||||+||....+.|+...
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~------~~~~~v~aaclylAcK~ee~p~~l~di~~~--- 74 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKG------RANDAIASACLYIACRQEGVPRTFKEICAV--- 74 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCC------CCHHHHHHHHHHHHHHhcCCCCCHHHHHHH---
Confidence 45678999999999999999999999999999999988887 889999999999999999996667887321
Q ss_pred ceeecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHH
Q 037214 121 EYKDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAA 200 (455)
Q Consensus 121 ~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAA 200 (455)
++ .+.++|.++|+.||+.|+|++..++|+.|+.+|.+.++.+..+...| +++++.++.+.-+.+++|+.||+
T Consensus 75 ----~~---~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A-~~i~~~~~~~~l~~g~~P~~IAa 146 (207)
T 1c9b_A 75 ----SR---ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAA-THIARKAVELDLVPGRSPISVAA 146 (207)
T ss_dssp ----SS---SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTTCSTTCCHHHHHH
T ss_pred ----HC---CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHcCccCCCChHHHHH
Confidence 11 22669999999999999999999999999999999999998898889 99999999888889999999999
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 037214 201 SAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMCI 247 (455)
Q Consensus 201 AAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~~ 247 (455)
||||+|....+... |...+ ...++ +++.+|++|++.|.+...
T Consensus 147 AaiylA~~~~~~~~---~~~~i-~~~~~-v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 147 AAIYMASQASAEKR---TQKEI-GDIAG-VADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHTSSSCC---CHHHH-HHHHT-CCHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHCCCC---CHHHH-HHHhC-CCHHHHHHHHHHHHHHHH
Confidence 99999999887543 44555 55777 499999999999876443
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.84 E-value=7.8e-20 Score=171.03 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhhhccC
Q 037214 40 SLRKIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFLEADN 119 (455)
Q Consensus 40 ~~R~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLqv~~s 119 (455)
+......++|.+++..+++++.+...|..+++|++....+.. ...+.++++|||+|||.||....+.|+... .
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~g------r~~~~vaaAclylAcr~~~~p~~l~di~~~-~ 79 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRG------RSIESVMAACVYAACRLLKVPRTLDEIADI-A 79 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTT------CCHHHHHHHHHHHHHHHHTCCCCHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCC------CCHHHHHHHHHHHHHHHcCCCCCHHHHHHH-H
Confidence 345688999999999999999999999999999999887776 789999999999999999976667887321 1
Q ss_pred CceeecCCccccHHHHHHHHHHHHHhcCccccc--CChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHH
Q 037214 120 HEYKDTDARVVRKVQLVAMEQKIDVGVDWRMRV--ATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTV 197 (455)
Q Consensus 120 ~~~~~td~~yt~~~eIl~ME~~IL~~L~w~L~~--pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~ 197 (455)
+ .+.++|.++++.|++.|+|++.. ++|..|+.+|...++.+..+...| +++++.+..+..+.+++|+.
T Consensus 80 ~---------v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A-~~i~~~~~~~~~~~gr~P~~ 149 (200)
T 1ais_B 80 R---------VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRA-IEILDEAYKRGLTSGKSPAG 149 (200)
T ss_dssp T---------SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHH-HHHHHHHHHTTCCTTSCHHH
T ss_pred C---------CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHcCcccCCCHHH
Confidence 1 12569999999999999999999 999999999999999998999999 99999999988899999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 037214 198 IAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMCI 247 (455)
Q Consensus 198 IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~~ 247 (455)
|||||||+|....+... |...+ ...++ +++.+|.+|++.|.+...
T Consensus 150 iAaAaly~A~~~~~~~~---t~~ei-~~~~~-vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 150 LVAAALYIASLLEGEKR---TQREV-AEVAR-VTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHTTCCC---CHHHH-HHHHT-CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCC---CHHHH-HHHhC-CCHHHHHHHHHHHHHHcC
Confidence 99999999999887543 55565 66778 599999999999987553
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.4e-16 Score=160.09 Aligned_cols=182 Identities=9% Similarity=0.084 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhhhccCCce
Q 037214 43 KIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFLEADNHEY 122 (455)
Q Consensus 43 ~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLqv~~s~~~ 122 (455)
......|.+++..++|+..+.-.|..++.|++....+.. ...+.+++||||||+|.|+....+.|+... .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kg------r~~~~vaaAclyiAcR~e~~prtl~ei~~~-~~-- 197 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKG------KSMESIMAASILIGCRRAEVARTFKEIQSL-IH-- 197 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCC------CCSHHHHTTTTTTTSBTTBSSCCHHHHHHS-SS--
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccC------CcHHHHHHHHHHHHHHHcCCCccHHHHHHH-HC--
Confidence 467799999999999999999999999999999887777 789999999999999999986667887221 11
Q ss_pred eecCCccccHHHHHHHHHHHHHhcC------------cccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccc
Q 037214 123 KDTDARVVRKVQLVAMEQKIDVGVD------------WRMRVATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISF 190 (455)
Q Consensus 123 ~~td~~yt~~~eIl~ME~~IL~~L~------------w~L~~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~f 190 (455)
+. .++|.++++.|++.|+ +++..++|..|+.+|...++.+..+.+.| ++++..+..+.-+
T Consensus 198 ------v~-~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A-~~i~~~~~~~~l~ 269 (345)
T 3k7a_M 198 ------VK-TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA-EYTAKKCKEIKEI 269 (345)
T ss_dssp ------CC-SHHHHHHHHHHHHHHTCC-----------------------------------------------------
T ss_pred ------CC-HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHhchh
Confidence 22 5599999999999999 99999999999999999999988888888 9999999988888
Q ss_pred cCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 037214 191 TRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMC 246 (455)
Q Consensus 191 l~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~ 246 (455)
.+++|+.|||||||+|...++... |...+ ...++ +++..|+.++..|.+..
T Consensus 270 ~Gr~P~~IAaAaIylAa~~~~~~~---t~~eI-a~~~~-Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 270 AGKSPITIAVVSIYLNILLFQIPI---TAAKV-GQTLQ-VTEGTIKSGYKILYEHR 320 (345)
T ss_dssp --------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCC---CHHHH-HHHHC-CCHHHHHHHHHHHHHHH
Confidence 999999999999999999887542 33344 44556 59999999999888765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.21 E-value=1.4e-11 Score=125.29 Aligned_cols=182 Identities=9% Similarity=0.095 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhhhccCCce
Q 037214 43 KIAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFLEADNHEY 122 (455)
Q Consensus 43 ~~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLqv~~s~~~ 122 (455)
......|.+++..++|+..+.-.|..++.+++....+.. .....++++|||+|+|.++....+.|+... .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rG------rs~e~vaAAclYiACR~~~~prtl~eI~~~-~~-- 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKG------KSMESIMAASILIGCRRAEVARTFKEIQSL-IH-- 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTT------CCHHHHHHHHHHHHHHHTCCBCCHHHHHHH-HT--
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccC------CCHHHHHHHHHHHHHHhcCCCccHHHHHHH-hC--
Confidence 456778899999999999999999999999998776666 778999999999999999987667777211 11
Q ss_pred eecCCccccHHHHHHHHHHHHHhcCcc------------cccCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccc
Q 037214 123 KDTDARVVRKVQLVAMEQKIDVGVDWR------------MRVATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISF 190 (455)
Q Consensus 123 ~~td~~yt~~~eIl~ME~~IL~~L~w~------------L~~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~f 190 (455)
...++|.+..+.|.+.|+.. +...+|.+|+.+|...++.+.++...| .+++..+..+.-.
T Consensus 198 -------v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A-~~i~~~~~~~~i~ 269 (345)
T 4bbr_M 198 -------VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA-EYTAKKCKEIKEI 269 (345)
T ss_dssp -------CCTTHHHHHHHHHHHCC--------------------------------------------------------
T ss_pred -------CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHhcccc
Confidence 11459999999999999974 777899999999999999988888888 8888888776666
Q ss_pred cCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 037214 191 TRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVDLEACLEDTCKMC 246 (455)
Q Consensus 191 l~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~L~~C~~~L~~l~ 246 (455)
.+.+|+.|||||||+|....+..-. ...+ ....+ +++..|+..+..|.+..
T Consensus 270 ~GR~P~~IAAAaIylAa~l~g~~~t---~~eI-a~v~~-Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 270 AGKSPITIAVVSIYLNILLFQIPIT---AAKV-GQTLQ-VTEGTIKSGYKILYEHR 320 (345)
T ss_dssp --------------------------------------------------------
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCC---HHHH-HHHHC-CCHHHHHHHHHHHHHHH
Confidence 7899999999999999988775322 2222 33344 68999999988886544
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.62 E-value=0.00014 Score=72.09 Aligned_cols=107 Identities=11% Similarity=0.058 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCc-cccccCCCccchhhhHHHHHHHHhhhccCCCCh-hhhhhccCCce
Q 037214 45 AMHQILQISKSNNLDAMIPYAAMNIFDRFISRNE-VPRMLGGMREDIVLAADACLTISWSVKSTSFSY-DEFLEADNHEY 122 (455)
Q Consensus 45 LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~-V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl-~dLqv~~s~~~ 122 (455)
+-+|+..+...-+++.+++..|+.|+||+..... +.. .+...+-+-++||.+|+|+-+....- ......
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l----~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV----- 147 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL----NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV----- 147 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC----STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc----CCchHHHHHHHHHHHHHHhccccccChhHhhhc-----
Confidence 5678999999999999999999999999987432 221 11567788899999999997765432 222110
Q ss_pred eecCCccccHHHHHHHHHHHHHhcCcccccCChHHHHHHHHHhc
Q 037214 123 KDTDARVVRKVQLVAMEQKIDVGVDWRMRVATPISFVEFFVGII 166 (455)
Q Consensus 123 ~~td~~yt~~~eIl~ME~~IL~~L~w~L~~pTP~~FL~~fl~~~ 166 (455)
+..+ .+++..||+..|..|+|+|.++ +..|...++...
T Consensus 148 ----gGis-l~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 148 ----GGVR-CHELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp ----HTSC-HHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred ----cCcC-HHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 1223 4599999999999999999754 556665554443
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.28 E-value=0.14 Score=46.79 Aligned_cols=86 Identities=12% Similarity=0.195 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHH
Q 037214 155 PISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVD 234 (455)
Q Consensus 155 P~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~ 234 (455)
.+.++..+...++..+.+...| ..+...++....+.+.+|..+|+||||+|.+..+... ....+ ...++ ++..+
T Consensus 12 a~~~I~~~~~~L~L~~~v~~~A-~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~---~l~di-~~~~~-v~~~~ 85 (200)
T 1ais_B 12 ALSELDRITAQLKLPRHVEEEA-ARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPR---TLDEI-ADIAR-VDKKE 85 (200)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHH-HHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCC---CHHHH-HHHTT-SCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCC---CHHHH-HHHHC-CCHHH
Confidence 5788999999999988998888 8888888877777789999999999999999877432 34455 44556 59999
Q ss_pred HHHHHHHHHHHH
Q 037214 235 LEACLEDTCKMC 246 (455)
Q Consensus 235 L~~C~~~L~~l~ 246 (455)
|..++..|.+..
T Consensus 86 i~~~~~~l~~~L 97 (200)
T 1ais_B 86 IGRSYRFIARNL 97 (200)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999998887643
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.53 E-value=0.28 Score=45.12 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHHH
Q 037214 155 PISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEVD 234 (455)
Q Consensus 155 P~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~~ 234 (455)
...+|..+...++..+.+...| ..+....+....+.+++|..||+||+|+|.+.-+.. .....+ ...++ ++..+
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A-~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p---~~l~di-~~~~~-~~~~~ 81 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRT-NNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP---RTFKEI-CAVSR-ISKKE 81 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCC---CCHHHH-HHTSS-SCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCC---CCHHHH-HHHHC-CCHHH
Confidence 4678899999999988888888 788888887888889999999999999999886643 244555 44555 58999
Q ss_pred HHHHHHHHHHHH
Q 037214 235 LEACLEDTCKMC 246 (455)
Q Consensus 235 L~~C~~~L~~l~ 246 (455)
|..+...|.+..
T Consensus 82 i~~~~~~ll~~L 93 (207)
T 1c9b_A 82 IGRCFKLILKAL 93 (207)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 998887776543
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=90.10 E-value=1.7 Score=43.70 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=69.6
Q ss_pred cCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCC
Q 037214 152 VATPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVD 231 (455)
Q Consensus 152 ~pTP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~ 231 (455)
.-..+..|..+...++..+.+...| ..+...+.....+-+.+...|||||||+|.+..+.. ..+..+ ...++ ++
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A-~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~p---rtl~eI-~~~~~-v~ 199 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCA-KEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA---RTFKEI-QSLIH-VK 199 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCB---CCHHHH-HHHHT-CC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCC---ccHHHH-HHHhC-CC
Confidence 3457888999999999999999999 888888876666677899999999999999877643 244444 33445 68
Q ss_pred HHHHHHHHHHHHHHH
Q 037214 232 EVDLEACLEDTCKMC 246 (455)
Q Consensus 232 ~~~L~~C~~~L~~l~ 246 (455)
..+|..++..|.+..
T Consensus 200 ~keigr~~k~l~~~L 214 (345)
T 4bbr_M 200 TKEFGKTLNIMKNIL 214 (345)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876533
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=87.91 E-value=4.1 Score=38.05 Aligned_cols=88 Identities=7% Similarity=0.066 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccC-cChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcC-----
Q 037214 155 PISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTR-FLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTK----- 228 (455)
Q Consensus 155 P~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~-y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~----- 228 (455)
..++|......++..+.....| ..+++..+....+.. +.+-.||+|||++|.+.-+... -+..++. .+.
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~A-~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~---~l~d~~~-~~~~~~~~ 105 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLATA-IVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV---HIRTICN-EANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCC---CHHHHHH-HHHTTCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcc---cHHHHHH-HHHHHccc
Confidence 4678888888888888888888 778888887888888 9999999999999998766322 3344422 221
Q ss_pred --CCCHHHHHHHHHHHHHHHH
Q 037214 229 --YVDEVDLEACLEDTCKMCI 247 (455)
Q Consensus 229 --yv~~~~L~~C~~~L~~l~~ 247 (455)
..+.++|..+-..|.+...
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTT
T ss_pred hhhccHHHHHHHHHHHHHHCC
Confidence 1378888888777766443
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=83.44 E-value=1 Score=45.13 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCCCCHH
Q 037214 154 TPISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKYVDEV 233 (455)
Q Consensus 154 TP~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~yv~~~ 233 (455)
..+.+|..+...++..+.+...| ..+...++....+-+.+...|||||||+|.+.-+. +..+..+ ...+. ++..
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A-~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~---prtl~ei-~~~~~-v~~k 201 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCA-KEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV---ARTFKEI-QSLIH-VKTK 201 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHH-HHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS---SCCHHHH-HHSSS-CCSH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC---CccHHHH-HHHHC-CCHH
Confidence 45788999999999999998888 88888887777777899999999999999976553 3345555 44555 5999
Q ss_pred HHHHHHHHHHHHHH
Q 037214 234 DLEACLEDTCKMCI 247 (455)
Q Consensus 234 ~L~~C~~~L~~l~~ 247 (455)
+|..|+..|.+...
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988877654
No 25
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=76.80 E-value=20 Score=34.19 Aligned_cols=88 Identities=11% Similarity=0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCC-CCHHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKY-VDEVD 234 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~y-v~~~~ 234 (455)
.+|+......++........+ ..+++..+....+....+-.+|+||+++|.+.-+..+ .....+ ...+.+ .+.++
T Consensus 42 v~wl~~v~~~~~l~~~tl~lA-v~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~--p~~~d~-~~~~~~~~~~~e 117 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMT-VSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYP--PEIGDF-AFVTDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSC--CCHHHH-HHHTCSSSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHH-HHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccC--ccHHHH-HHHhcCCCCHHH
Confidence 466777777777777777778 7778888877778888999999999999998876532 234455 345532 38999
Q ss_pred HHHHHHHHHHHHH
Q 037214 235 LEACLEDTCKMCI 247 (455)
Q Consensus 235 L~~C~~~L~~l~~ 247 (455)
|..+-..|.+...
T Consensus 118 I~~mE~~IL~~L~ 130 (269)
T 2b9r_A 118 IRQMEMKILRALN 130 (269)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999888876554
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=76.06 E-value=20 Score=34.45 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCC
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFN 212 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~ 212 (455)
.+||......++..+.....| ..+++..+....+..+.+-.||+||+++|.+.-+.
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA-~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~ 102 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATA-TVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEF 102 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHH-HHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhcc
Confidence 567777788888888888888 77888888888899999999999999999987654
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=74.09 E-value=8 Score=36.43 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCC
Q 037214 155 PISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFN 212 (455)
Q Consensus 155 P~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~ 212 (455)
..+|+......++..+.....| ..+++..+....+..+.+-.+|+||+++|.+.-+.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A-~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTA-IVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-HHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 4678888888888888888888 78888888888899999999999999999987664
No 28
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=73.73 E-value=23 Score=33.60 Aligned_cols=88 Identities=7% Similarity=-0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcC-CCCHHHH
Q 037214 157 SFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTK-YVDEVDL 235 (455)
Q Consensus 157 ~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~-yv~~~~L 235 (455)
+|+......++........+ ..+++..+....+....+-.+|+||+++|.+.-+..+ .....+ ...+. ..+.++|
T Consensus 62 ~wl~~v~~~~~l~~~tl~lA-v~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p--~~~~~~-~~~~~~~~~~~eI 137 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLA-MNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIP--LTAEKL-CIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHH-HHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSC--CCHHHH-HHHTTTSSCHHHH
T ss_pred HHHHHHHHHHCCchhHHHHH-HHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCC--CCHHHH-HHHhcCCCCHHHH
Confidence 45555555555555555666 5667777777777788999999999999999877533 234444 33443 1388999
Q ss_pred HHHHHHHHHHHHh
Q 037214 236 EACLEDTCKMCIE 248 (455)
Q Consensus 236 ~~C~~~L~~l~~~ 248 (455)
..+-..|.+....
T Consensus 138 ~~mE~~IL~~L~~ 150 (271)
T 2w96_A 138 LQMELLLVNKLKW 150 (271)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCC
Confidence 9888877765543
No 29
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=71.87 E-value=31 Score=33.92 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCC
Q 037214 157 SFVEFFVGIIP--IGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFN 212 (455)
Q Consensus 157 ~FL~~fl~~~~--~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~ 212 (455)
.+|..+...++ ..+.....| ..+++..+....+..+.|-.||+|||++|.+.-+.
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA-~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~ 118 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTA-CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF 118 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH-HHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-HHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC
Confidence 56677777777 778888888 77888888888899999999999999999987664
No 30
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=71.80 E-value=9.8 Score=35.72 Aligned_cols=55 Identities=16% Similarity=-0.024 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhC
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLF 211 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~ 211 (455)
.+|+......++..+.....| ..+++..+....+..+.+-.||+||+++|.+.-+
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A-~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE 99 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATG-IIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE 99 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHHH-HHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc
Confidence 578888888888888888888 7888888888888999999999999999998765
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=71.76 E-value=22 Score=33.53 Aligned_cols=89 Identities=2% Similarity=-0.132 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCC-CCHHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKY-VDEVD 234 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~y-v~~~~ 234 (455)
.+|+......++........+ ..+++..+..........-.+|+||+++|.+.-+..+ .-...+ ...+++ .+.++
T Consensus 55 vdwl~ev~~~~~l~~etl~lA-v~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~--p~~~d~-~~~~~~~~~~~~ 130 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVALA-LNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTP--ISTSSL-CYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSC--CCHHHH-HHHTTTCSCHHH
T ss_pred HHHHHHHHHHhCCCccHHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccC--CCHHHH-HHHHCCCCCHHH
Confidence 456666667777777777777 6777777777667777888999999999998766532 233445 334431 38999
Q ss_pred HHHHHHHHHHHHHh
Q 037214 235 LEACLEDTCKMCIE 248 (455)
Q Consensus 235 L~~C~~~L~~l~~~ 248 (455)
|..+-..|.+....
T Consensus 131 i~~mE~~iL~~L~~ 144 (257)
T 1g3n_C 131 LIDQEKELLEKLAW 144 (257)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCC
Confidence 99888887765543
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=69.32 E-value=9.6 Score=38.27 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCC
Q 037214 155 PISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFN 212 (455)
Q Consensus 155 P~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~ 212 (455)
..+||......++..+.....| ..+++..+....+..+.+-.||+|||++|.+.-+.
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tA-v~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTA-IVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHH-HHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 5678888888888888888888 78888888888899999999999999999987664
No 33
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=68.95 E-value=24 Score=33.22 Aligned_cols=88 Identities=8% Similarity=-0.045 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcC-CCCHHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTK-YVDEVD 234 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~-yv~~~~ 234 (455)
.+|+......++........+ ..+++..+....+....+-.+|+||+++|.+.-+..+ .....+ ...+. ..+.++
T Consensus 43 vdwl~~v~~~~~l~~~tl~lA-v~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~--~~~~d~-~~i~~~~~~~~~ 118 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHLA-VNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYP--PEVAEF-VYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSC--CCHHHH-HHHTTSSSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHH-HHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCC--CCHHHH-HHHHcCCcCHHH
Confidence 456666677777777777777 6666766666666667788999999999998877532 234455 33443 238888
Q ss_pred HHHHHHHHHHHHH
Q 037214 235 LEACLEDTCKMCI 247 (455)
Q Consensus 235 L~~C~~~L~~l~~ 247 (455)
|..+-..|.+...
T Consensus 119 i~~mE~~iL~~L~ 131 (260)
T 2cch_B 119 VLRMEHLVLKVLT 131 (260)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 8888877776554
No 34
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=68.72 E-value=26 Score=32.95 Aligned_cols=88 Identities=8% Similarity=0.053 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCC-CCHHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKY-VDEVD 234 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~y-v~~~~ 234 (455)
.+|+.......+........+ ..+++..+..........-.+|+||+++|.+.-+..+ .....+ ...+++ .+.++
T Consensus 56 vdwl~~v~~~~~l~~etl~lA-v~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~--p~~~d~-~~~~~~~~~~~~ 131 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLS-VSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKP--MTVSKL-TYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHH-HHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSC--CCHHHH-STTC---CCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHH-HHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCC--CCHHHH-HHHhCCCCCHHH
Confidence 456666666777766677777 7778888877777888999999999999998876432 233444 333321 37888
Q ss_pred HHHHHHHHHHHHH
Q 037214 235 LEACLEDTCKMCI 247 (455)
Q Consensus 235 L~~C~~~L~~l~~ 247 (455)
|..+-..|.+...
T Consensus 132 i~~mE~~IL~~L~ 144 (254)
T 2f2c_A 132 LINQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 8887777765544
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=58.47 E-value=60 Score=31.05 Aligned_cols=89 Identities=10% Similarity=0.004 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-ccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcC-CCCHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGD-ISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTK-YVDEV 233 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d-~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~-yv~~~ 233 (455)
.+|+......++........+ ..+++..+.. ........-.+|+||+++|.+.-+..+ .....+ ...+. ..+.+
T Consensus 54 v~wl~~v~~~~~l~~~tl~lA-v~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~--p~l~~~-~~i~~~~~~~~ 129 (283)
T 1w98_B 54 LDWLMEVCEVYKLHRETFYLA-QDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYP--PKLHQF-AYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHTTCBHHHHHHH-HHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSC--CCHHHH-HHTTTTSSCHH
T ss_pred HHHHHHHHHHhCCCccHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCC--CcHHHH-HHHHcCCCCHH
Confidence 355666666666666666666 5566666554 345668889999999999998876532 234455 33442 23899
Q ss_pred HHHHHHHHHHHHHHh
Q 037214 234 DLEACLEDTCKMCIE 248 (455)
Q Consensus 234 ~L~~C~~~L~~l~~~ 248 (455)
+|..+-..|.+....
T Consensus 130 ei~~mE~~IL~~L~~ 144 (283)
T 1w98_B 130 EILTMELMIMKALKW 144 (283)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 999988888776553
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=57.51 E-value=38 Score=32.95 Aligned_cols=88 Identities=7% Similarity=-0.099 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCC-CCHHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKY-VDEVD 234 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~y-v~~~~ 234 (455)
.+|+......++........| ..+++..+.........+-.+|+||+++|.+.-+..+. ....+ ...+.+ .+.++
T Consensus 75 vdwl~ev~~~~~l~~~t~~lA-v~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~--~~~~l-~~~~~~~~~~~~ 150 (306)
T 3g33_B 75 AYWMLEVCEEQRCEEEVFPLA-MNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPL--TIEKL-CIYTDHAVSPRQ 150 (306)
T ss_dssp HHHHHHHHHHTTCCTTHHHHH-HHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCC--CTTHH-HHHTTTSSCHHH
T ss_pred HHHHHHHHHHhCCcHhHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCC--CHHHH-HHHhccCccHHH
Confidence 456666666666666666667 66677777667777889999999999999987664431 22334 333432 37888
Q ss_pred HHHHHHHHHHHHH
Q 037214 235 LEACLEDTCKMCI 247 (455)
Q Consensus 235 L~~C~~~L~~l~~ 247 (455)
|..+-..|.+...
T Consensus 151 i~~mE~~IL~~L~ 163 (306)
T 3g33_B 151 LRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 8888777766544
No 37
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=44.62 E-value=13 Score=32.77 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhcc--CCCChhhhhhc
Q 037214 43 KIAMHQILQISKSN---NLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKS--TSFSYDEFLEA 117 (455)
Q Consensus 43 ~~LVdWL~eV~~~f---~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE--~~~Pl~dLqv~ 117 (455)
.++|-|+..|-..+ |.+...+..-.|++=-|+-.+.+-...-.++.++|-+-.|||+||=-|-. +..|++-+.+.
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYPLKPFlv~ 107 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVE 107 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhcccccccCcchhhc
Confidence 46788888887776 55655555544544445433322111123458899999999999999864 44577766554
No 38
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=39.60 E-value=94 Score=29.33 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHhcCCccccccCCCccchhhhHHHHHHHHhhhccCCCChhhhhhccCCcee
Q 037214 44 IAMHQILQISKSNNLDAMIPYAAMNIFDRFISRNEVPRMLGGMREDIVLAADACLTISWSVKSTSFSYDEFLEADNHEYK 123 (455)
Q Consensus 44 ~LVdWL~eV~~~f~L~~eTl~LAV~yLDRFLs~~~V~~~~~~k~~~LQLvgvaCL~IASK~EE~~~Pl~dLqv~~s~~~~ 123 (455)
.+.+-|..++.+-+++...+--||.+--.|.-...--. ....+-|-|+++|+.||+---...+|+.++..-++.
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rg---qRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~s--- 87 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARG---QRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSS--- 87 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTT---
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhc---ccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhh---
Confidence 35566788999999999999999999988874331110 112557899999999998655555566666322121
Q ss_pred ecCCccccHHHHHHHHHHHHHhcCcc-----cccCChHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHhccccccCcChHH
Q 037214 124 DTDARVVRKVQLVAMEQKIDVGVDWR-----MRVATPISFVEFFVGIIPIGRGIK-RRTLNEIVIQTQGDISFTRFLPTV 197 (455)
Q Consensus 124 ~td~~yt~~~eIl~ME~~IL~~L~w~-----L~~pTP~~FL~~fl~~~~~~~~l~-~~al~~LlelsL~d~~fl~y~PS~ 197 (455)
.... ++.+.| |++.|+-. +...-.-..|..|+..++..-.++ -.| ..|+...-.--.+..+--..
T Consensus 88 -----L~Dv-elrr~E--iv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C-~rL~~ai~~ve~LA~~~~~d 158 (260)
T 3h4c_A 88 -----LGDV-ELRRAD--IVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHC-KRLLTALGRVEALAGLTVAD 158 (260)
T ss_dssp -----CCCH-HHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHTCGGGTTCCHHH
T ss_pred -----hhHH-HHHHHH--HHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHH-HHHHHHHHHHHHHhhhhHHH
Confidence 1112 444443 55666532 111112334556666666643332 223 33333222223344455444
Q ss_pred HHHHHHHHHHH
Q 037214 198 IAASAVFTACR 208 (455)
Q Consensus 198 IAAAAI~lA~~ 208 (455)
=-.-|+++|+-
T Consensus 159 rii~AlLLArT 169 (260)
T 3h4c_A 159 RVTTALLLART 169 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 44556777774
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=38.17 E-value=2e+02 Score=27.09 Aligned_cols=89 Identities=8% Similarity=-0.115 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccccCcChHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHcCC-CCHHH
Q 037214 156 ISFVEFFVGIIPIGRGIKRRTLNEIVIQTQGDISFTRFLPTVIAASAVFTACRVLFNDQYYREKENMIRRVTKY-VDEVD 234 (455)
Q Consensus 156 ~~FL~~fl~~~~~~~~l~~~al~~LlelsL~d~~fl~y~PS~IAAAAI~lA~~~l~~~~~~~w~~~Ll~~~s~y-v~~~~ 234 (455)
.+|+.......+........| ..+++..+..........-.+|++|+++|.+.-+..+. -...+ ..++.+ .+.++
T Consensus 53 vdWl~ev~~~~~l~~eT~~lA-v~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~--~~~~l-~~~~~~~yt~~~ 128 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNNVFPLA-VALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPI--KATQL-AYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHTTCCTTHHHHH-HHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCC--CHHHH-HHHHCTTCCHHH
T ss_pred HHHHHHHHHHcCCChHHHHHH-HHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHH-HHHhCCCCCHHH
Confidence 455656666666666666666 56666666666666677889999999999987765432 33444 334432 37888
Q ss_pred HHHHHHHHHHHHHh
Q 037214 235 LEACLEDTCKMCIE 248 (455)
Q Consensus 235 L~~C~~~L~~l~~~ 248 (455)
|...-..|.+....
T Consensus 129 i~~mE~~IL~~L~w 142 (252)
T 1f5q_B 129 LLTLEVKSLDTLSW 142 (252)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCC
Confidence 88877777665543
No 40
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=36.81 E-value=19 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=24.7
Q ss_pred CccchhhhHHHHHHHHhhhcc--CCCChhhhhhc
Q 037214 86 MREDIVLAADACLTISWSVKS--TSFSYDEFLEA 117 (455)
Q Consensus 86 k~~~LQLvgvaCL~IASK~EE--~~~Pl~dLqv~ 117 (455)
.+.++|-+-+|||+||=-|-. +..|++-+.+.
T Consensus 119 te~eLqa~vLTCLYlsYSYmGNEISYPLKPFlve 152 (208)
T 1unl_D 119 SDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVE 152 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCS
T ss_pred CHHHHHHHHHHHHHHHHHhhCccccccCcceeec
Confidence 458899999999999999864 44577766553
Done!