Query 037216
Match_columns 379
No_of_seqs 354 out of 1873
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 8.5E-18 1.8E-22 166.0 10.4 74 150-225 206-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 1.7E-14 3.7E-19 102.1 1.8 44 175-219 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 4.7E-12 1E-16 120.3 5.2 74 150-223 149-227 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.2 3E-11 6.6E-16 119.0 7.5 69 154-226 270-348 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 1.1E-11 2.5E-16 97.4 3.6 46 173-219 18-73 (73)
6 COG5540 RING-finger-containing 99.2 1.1E-11 2.5E-16 119.3 3.5 51 173-224 322-373 (374)
7 PF13920 zf-C3HC4_3: Zinc fing 98.9 1E-09 2.2E-14 79.7 2.9 46 174-223 2-48 (50)
8 cd00162 RING RING-finger (Real 98.9 1.8E-09 3.9E-14 74.5 3.8 44 176-222 1-45 (45)
9 KOG0317 Predicted E3 ubiquitin 98.9 3.8E-09 8.2E-14 101.7 6.4 49 173-225 238-286 (293)
10 KOG0320 Predicted E3 ubiquitin 98.8 2E-09 4.4E-14 97.0 3.5 54 170-225 127-180 (187)
11 PLN03208 E3 ubiquitin-protein 98.8 3.2E-09 6.9E-14 97.6 4.6 49 173-225 17-81 (193)
12 PF12861 zf-Apc11: Anaphase-pr 98.8 4.2E-09 9.1E-14 84.7 3.2 53 173-225 20-84 (85)
13 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.9E-09 8.5E-14 72.8 2.7 39 177-218 1-39 (39)
14 KOG0823 Predicted E3 ubiquitin 98.7 7.5E-09 1.6E-13 97.0 4.2 50 172-225 45-97 (230)
15 KOG0802 E3 ubiquitin ligase [P 98.7 6.9E-09 1.5E-13 109.7 2.2 51 173-224 290-342 (543)
16 PHA02926 zinc finger-like prot 98.7 1.7E-08 3.7E-13 94.2 3.8 51 173-223 169-230 (242)
17 PF14634 zf-RING_5: zinc-RING 98.6 2.5E-08 5.3E-13 70.7 3.3 44 176-220 1-44 (44)
18 smart00504 Ubox Modified RING 98.6 5.6E-08 1.2E-12 73.1 4.2 46 175-224 2-47 (63)
19 smart00184 RING Ring finger. E 98.6 4.9E-08 1.1E-12 64.9 3.4 38 177-218 1-39 (39)
20 PF00097 zf-C3HC4: Zinc finger 98.5 6E-08 1.3E-12 67.2 3.0 39 177-218 1-41 (41)
21 PF15227 zf-C3HC4_4: zinc fing 98.5 6.8E-08 1.5E-12 68.0 3.1 38 177-218 1-42 (42)
22 TIGR00599 rad18 DNA repair pro 98.4 2.6E-07 5.5E-12 94.0 4.0 48 173-224 25-72 (397)
23 KOG0828 Predicted E3 ubiquitin 98.4 4E-07 8.6E-12 93.1 5.3 51 173-224 570-635 (636)
24 COG5194 APC11 Component of SCF 98.3 3.9E-07 8.4E-12 72.1 3.1 51 175-225 21-83 (88)
25 KOG1493 Anaphase-promoting com 98.2 3.8E-07 8.2E-12 71.6 1.3 52 173-224 19-82 (84)
26 PF13445 zf-RING_UBOX: RING-ty 98.2 1E-06 2.2E-11 62.5 2.7 38 177-216 1-43 (43)
27 COG5574 PEX10 RING-finger-cont 98.2 7.9E-07 1.7E-11 84.9 2.4 50 173-226 214-265 (271)
28 KOG2164 Predicted E3 ubiquitin 98.1 1.2E-06 2.7E-11 90.2 3.1 48 174-225 186-238 (513)
29 smart00744 RINGv The RING-vari 98.1 2.7E-06 5.9E-11 61.9 3.2 42 176-219 1-49 (49)
30 KOG4265 Predicted E3 ubiquitin 98.1 1.8E-06 4E-11 85.6 3.1 48 173-224 289-337 (349)
31 KOG1734 Predicted RING-contain 98.1 9.7E-07 2.1E-11 84.5 0.9 51 172-223 222-281 (328)
32 COG5219 Uncharacterized conser 98.0 1.6E-06 3.5E-11 94.1 -0.1 51 173-223 1468-1523(1525)
33 TIGR00570 cdk7 CDK-activating 98.0 6.6E-06 1.4E-10 80.9 4.1 51 174-225 3-56 (309)
34 PF04564 U-box: U-box domain; 97.9 6.4E-06 1.4E-10 64.6 2.5 49 173-225 3-52 (73)
35 COG5432 RAD18 RING-finger-cont 97.8 9.7E-06 2.1E-10 78.4 2.3 48 173-224 24-71 (391)
36 KOG2177 Predicted E3 ubiquitin 97.8 8.9E-06 1.9E-10 76.1 2.0 44 173-220 12-55 (386)
37 KOG0287 Postreplication repair 97.8 7.4E-06 1.6E-10 80.7 1.4 48 174-225 23-70 (442)
38 PF11793 FANCL_C: FANCL C-term 97.8 4E-06 8.6E-11 65.5 -0.4 52 174-225 2-68 (70)
39 KOG1571 Predicted E3 ubiquitin 97.8 3.9E-06 8.5E-11 83.4 -1.0 44 173-223 304-347 (355)
40 KOG0804 Cytoplasmic Zn-finger 97.7 1.4E-05 3.1E-10 81.2 1.5 48 173-223 174-222 (493)
41 KOG4172 Predicted E3 ubiquitin 97.7 1.6E-05 3.5E-10 58.7 1.0 46 173-222 6-53 (62)
42 KOG0827 Predicted E3 ubiquitin 97.6 2.4E-05 5.1E-10 78.4 2.0 45 175-219 5-52 (465)
43 KOG2930 SCF ubiquitin ligase, 97.6 2.6E-05 5.6E-10 64.8 1.9 52 173-224 45-109 (114)
44 KOG0311 Predicted E3 ubiquitin 97.5 1.1E-05 2.5E-10 79.9 -1.8 49 173-224 42-91 (381)
45 KOG1039 Predicted E3 ubiquitin 97.5 5.9E-05 1.3E-09 75.6 2.5 50 173-222 160-220 (344)
46 KOG0825 PHD Zn-finger protein 97.4 2.7E-05 5.9E-10 83.5 -0.2 49 174-223 123-171 (1134)
47 KOG4445 Uncharacterized conser 97.4 5.3E-05 1.2E-09 73.7 1.0 53 173-226 114-189 (368)
48 KOG0824 Predicted E3 ubiquitin 97.4 8.6E-05 1.9E-09 72.4 2.2 49 173-225 6-55 (324)
49 KOG1645 RING-finger-containing 97.3 0.00014 2.9E-09 73.5 2.8 48 173-220 3-53 (463)
50 PF14835 zf-RING_6: zf-RING of 97.1 0.00014 2.9E-09 55.8 0.0 48 175-227 8-55 (65)
51 KOG1785 Tyrosine kinase negati 97.1 0.0002 4.3E-09 72.1 1.1 48 176-227 371-420 (563)
52 KOG4159 Predicted E3 ubiquitin 96.9 0.00051 1.1E-08 70.2 2.8 48 173-224 83-130 (398)
53 KOG0978 E3 ubiquitin ligase in 96.9 0.00038 8.2E-09 75.1 1.6 47 175-225 644-691 (698)
54 KOG1428 Inhibitor of type V ad 96.8 0.00073 1.6E-08 76.6 3.2 69 154-223 3466-3544(3738)
55 KOG3970 Predicted E3 ubiquitin 96.6 0.0014 3E-08 61.8 2.8 52 173-226 49-108 (299)
56 KOG0297 TNF receptor-associate 96.5 0.0017 3.6E-08 66.5 3.1 50 173-225 20-69 (391)
57 KOG1814 Predicted E3 ubiquitin 96.4 0.0032 6.9E-08 63.9 4.3 48 173-221 183-238 (445)
58 KOG1941 Acetylcholine receptor 96.3 0.0014 3E-08 66.1 1.0 46 174-220 365-413 (518)
59 PF11789 zf-Nse: Zinc-finger o 96.2 0.0028 6.2E-08 47.5 1.8 42 173-217 10-53 (57)
60 PF05883 Baculo_RING: Baculovi 96.1 0.0019 4.1E-08 56.5 0.9 44 174-218 26-75 (134)
61 COG5236 Uncharacterized conser 96.0 0.0079 1.7E-07 59.9 4.3 66 153-222 40-107 (493)
62 KOG0801 Predicted E3 ubiquitin 95.8 0.0029 6.3E-08 56.8 0.5 41 160-202 164-204 (205)
63 KOG4692 Predicted E3 ubiquitin 95.6 0.0098 2.1E-07 59.4 3.6 67 154-224 400-468 (489)
64 KOG3039 Uncharacterized conser 95.6 0.016 3.5E-07 55.4 4.6 54 173-226 220-273 (303)
65 KOG0826 Predicted E3 ubiquitin 95.4 0.041 8.8E-07 54.7 7.0 47 173-222 299-345 (357)
66 PHA02862 5L protein; Provision 95.4 0.013 2.9E-07 51.8 3.0 47 174-225 2-55 (156)
67 PF12906 RINGv: RING-variant d 95.1 0.014 3E-07 42.0 2.0 40 177-218 1-47 (47)
68 PF10367 Vps39_2: Vacuolar sor 95.1 0.0082 1.8E-07 49.3 0.8 32 173-206 77-108 (109)
69 KOG1952 Transcription factor N 95.0 0.0067 1.4E-07 66.4 0.2 48 173-220 190-244 (950)
70 KOG1002 Nucleotide excision re 95.0 0.013 2.8E-07 61.3 2.1 49 173-225 535-588 (791)
71 KOG2879 Predicted E3 ubiquitin 94.9 0.081 1.8E-06 51.4 7.1 48 173-223 238-287 (298)
72 COG5152 Uncharacterized conser 94.8 0.012 2.5E-07 54.7 1.1 45 174-222 196-240 (259)
73 KOG4275 Predicted E3 ubiquitin 94.8 0.0053 1.2E-07 59.9 -1.2 42 174-223 300-342 (350)
74 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.035 7.5E-07 53.8 4.2 53 172-225 111-163 (260)
75 PHA03096 p28-like protein; Pro 94.7 0.018 3.8E-07 56.7 2.1 46 175-220 179-231 (284)
76 PF14570 zf-RING_4: RING/Ubox 94.7 0.028 6.1E-07 40.8 2.5 44 177-221 1-46 (48)
77 KOG4739 Uncharacterized protei 94.5 0.015 3.3E-07 55.3 1.3 44 176-223 5-48 (233)
78 PHA02825 LAP/PHD finger-like p 94.3 0.049 1.1E-06 49.0 3.7 48 173-224 7-60 (162)
79 KOG2660 Locus-specific chromos 94.0 0.015 3.2E-07 57.7 -0.1 50 173-225 14-63 (331)
80 KOG1813 Predicted E3 ubiquitin 93.6 0.034 7.4E-07 54.5 1.6 47 173-223 240-286 (313)
81 PF14447 Prok-RING_4: Prokaryo 93.2 0.047 1E-06 40.7 1.4 46 174-225 7-52 (55)
82 KOG1940 Zn-finger protein [Gen 93.1 0.053 1.1E-06 53.0 2.1 50 173-224 157-207 (276)
83 KOG4185 Predicted E3 ubiquitin 93.1 0.083 1.8E-06 51.6 3.5 47 175-222 4-54 (296)
84 PF08746 zf-RING-like: RING-li 93.1 0.054 1.2E-06 38.3 1.6 41 177-218 1-43 (43)
85 KOG0827 Predicted E3 ubiquitin 93.0 0.0075 1.6E-07 60.9 -3.9 50 174-224 196-246 (465)
86 KOG3268 Predicted E3 ubiquitin 92.7 0.07 1.5E-06 48.8 2.1 30 196-225 190-230 (234)
87 COG5222 Uncharacterized conser 92.5 0.071 1.5E-06 52.4 2.0 43 175-220 275-318 (427)
88 PF14446 Prok-RING_1: Prokaryo 91.2 0.27 5.8E-06 36.6 3.3 45 173-221 4-50 (54)
89 KOG1001 Helicase-like transcri 90.4 0.11 2.3E-06 56.9 1.0 46 175-225 455-502 (674)
90 KOG2932 E3 ubiquitin ligase in 90.4 0.13 2.8E-06 50.8 1.4 42 176-222 92-133 (389)
91 KOG1100 Predicted E3 ubiquitin 89.9 0.14 2.9E-06 48.3 1.1 40 177-224 161-201 (207)
92 KOG3161 Predicted E3 ubiquitin 89.9 0.11 2.5E-06 55.6 0.6 42 175-220 12-54 (861)
93 KOG2114 Vacuolar assembly/sort 89.7 0.16 3.4E-06 56.1 1.5 42 175-222 841-882 (933)
94 COG5175 MOT2 Transcriptional r 89.4 0.28 6E-06 49.1 2.8 49 173-223 13-64 (480)
95 PF10272 Tmpp129: Putative tra 89.1 0.41 8.8E-06 48.6 3.8 29 196-224 311-352 (358)
96 KOG2034 Vacuolar sorting prote 88.7 0.19 4.2E-06 55.6 1.4 35 173-209 816-850 (911)
97 KOG0309 Conserved WD40 repeat- 87.9 0.31 6.6E-06 53.3 2.1 26 191-217 1044-1069(1081)
98 KOG1609 Protein involved in mR 86.7 0.38 8.2E-06 46.8 1.9 51 173-224 77-135 (323)
99 KOG0298 DEAD box-containing he 85.1 0.23 4.9E-06 57.1 -0.5 47 173-222 1152-1198(1394)
100 PF12273 RCR: Chitin synthesis 84.7 0.83 1.8E-05 39.5 2.9 6 117-122 23-28 (130)
101 KOG2817 Predicted E3 ubiquitin 84.7 0.77 1.7E-05 46.9 3.0 47 173-220 333-382 (394)
102 KOG0802 E3 ubiquitin ligase [P 84.1 0.5 1.1E-05 50.5 1.5 47 173-227 478-524 (543)
103 PF07800 DUF1644: Protein of u 82.4 1.5 3.4E-05 39.5 3.6 35 174-209 2-46 (162)
104 KOG3002 Zn finger protein [Gen 82.0 1 2.2E-05 44.8 2.6 46 173-224 47-92 (299)
105 PF01102 Glycophorin_A: Glycop 80.5 2.6 5.5E-05 36.6 4.2 9 114-122 83-91 (122)
106 KOG1829 Uncharacterized conser 79.9 0.66 1.4E-05 49.8 0.5 43 173-219 510-557 (580)
107 KOG3800 Predicted E3 ubiquitin 79.1 1.6 3.6E-05 42.9 2.9 46 176-222 2-50 (300)
108 COG5183 SSM4 Protein involved 78.8 1.8 3.8E-05 48.0 3.2 49 173-223 11-66 (1175)
109 PF01102 Glycophorin_A: Glycop 78.0 4.4 9.6E-05 35.1 4.9 35 91-125 63-97 (122)
110 PF05290 Baculo_IE-1: Baculovi 77.5 1.8 3.9E-05 38.0 2.4 53 173-225 79-134 (140)
111 KOG0825 PHD Zn-finger protein 76.7 1.6 3.5E-05 48.1 2.3 51 173-223 95-154 (1134)
112 KOG1812 Predicted E3 ubiquitin 76.5 1.3 2.8E-05 45.5 1.4 38 173-211 145-183 (384)
113 PF05399 EVI2A: Ectropic viral 75.0 17 0.00036 34.5 8.1 16 92-107 127-142 (227)
114 PF02439 Adeno_E3_CR2: Adenovi 73.7 7.6 0.00016 26.9 4.1 26 95-120 6-31 (38)
115 PF03854 zf-P11: P-11 zinc fin 73.6 1.2 2.6E-05 32.3 0.2 44 176-225 4-48 (50)
116 KOG0269 WD40 repeat-containing 73.4 2.7 5.9E-05 46.2 3.0 42 174-217 779-820 (839)
117 KOG3053 Uncharacterized conser 73.1 1.7 3.6E-05 42.2 1.2 49 173-222 19-81 (293)
118 PF13901 DUF4206: Domain of un 72.7 2.7 5.8E-05 39.3 2.4 42 173-220 151-197 (202)
119 PF15050 SCIMP: SCIMP protein 72.4 6.4 0.00014 34.0 4.4 29 95-125 8-36 (133)
120 COG5220 TFB3 Cdk activating ki 69.0 2 4.4E-05 41.3 0.7 46 173-218 9-59 (314)
121 KOG3899 Uncharacterized conser 68.7 2.8 6.2E-05 41.4 1.7 29 196-224 325-366 (381)
122 KOG2066 Vacuolar assembly/sort 68.6 1.9 4.1E-05 47.6 0.5 45 174-220 784-832 (846)
123 KOG4362 Transcriptional regula 67.7 1.5 3.2E-05 48.0 -0.6 46 174-223 21-69 (684)
124 PF02009 Rifin_STEVOR: Rifin/s 65.1 7.7 0.00017 38.6 4.0 25 96-120 259-283 (299)
125 PF05393 Hum_adeno_E3A: Human 61.6 20 0.00044 29.3 5.1 22 107-128 44-65 (94)
126 PF10571 UPF0547: Uncharacteri 61.4 5 0.00011 25.4 1.3 23 176-200 2-24 (26)
127 KOG3113 Uncharacterized conser 60.0 8.2 0.00018 37.5 3.0 52 173-226 110-161 (293)
128 KOG4718 Non-SMC (structural ma 58.9 5 0.00011 38.0 1.3 44 174-220 181-224 (235)
129 KOG3842 Adaptor protein Pellin 57.0 12 0.00026 37.5 3.6 52 173-225 340-416 (429)
130 KOG4367 Predicted Zn-finger pr 56.5 5.7 0.00012 41.3 1.4 34 173-210 3-36 (699)
131 KOG1815 Predicted E3 ubiquitin 55.9 6.9 0.00015 40.8 1.9 36 173-211 69-104 (444)
132 PF15330 SIT: SHP2-interacting 55.0 17 0.00038 30.7 3.8 27 97-123 2-28 (107)
133 COG5109 Uncharacterized conser 53.9 9.8 0.00021 38.1 2.5 45 173-219 335-383 (396)
134 PF07975 C1_4: TFIIH C1-like d 53.2 8.7 0.00019 28.3 1.5 42 177-219 2-50 (51)
135 PF10577 UPF0560: Uncharacteri 52.3 20 0.00044 40.0 4.8 30 96-125 273-303 (807)
136 TIGR00622 ssl1 transcription f 52.3 18 0.0004 30.9 3.6 46 174-219 55-110 (112)
137 smart00132 LIM Zinc-binding do 52.1 13 0.00027 24.1 2.1 37 177-223 2-38 (39)
138 PF14979 TMEM52: Transmembrane 51.9 22 0.00049 31.8 4.1 31 93-123 20-50 (154)
139 PF06679 DUF1180: Protein of u 50.9 1E+02 0.0022 28.1 8.3 13 22-34 5-17 (163)
140 KOG3005 GIY-YIG type nuclease 50.8 7.7 0.00017 37.9 1.2 52 174-225 182-245 (276)
141 PF02891 zf-MIZ: MIZ/SP-RING z 49.6 20 0.00044 25.9 3.0 42 176-221 4-50 (50)
142 PF06906 DUF1272: Protein of u 49.0 25 0.00055 26.4 3.4 46 175-224 6-53 (57)
143 PF15102 TMEM154: TMEM154 prot 46.5 7 0.00015 34.9 0.2 10 202-211 127-136 (146)
144 KOG2807 RNA polymerase II tran 45.3 18 0.00039 36.4 2.8 68 151-220 306-375 (378)
145 KOG3039 Uncharacterized conser 45.3 12 0.00027 36.2 1.6 35 173-211 42-76 (303)
146 smart00249 PHD PHD zinc finger 44.3 14 0.0003 24.7 1.4 31 176-207 1-31 (47)
147 TIGR01477 RIFIN variant surfac 43.4 25 0.00055 35.7 3.6 16 105-120 322-337 (353)
148 PF08114 PMP1_2: ATPase proteo 43.1 31 0.00066 24.4 2.9 27 96-122 11-37 (43)
149 PTZ00046 rifin; Provisional 41.2 28 0.0006 35.6 3.5 15 105-119 327-341 (358)
150 KOG1812 Predicted E3 ubiquitin 39.8 15 0.00033 37.7 1.4 44 174-218 306-351 (384)
151 PF05568 ASFV_J13L: African sw 39.8 42 0.00092 30.1 4.0 12 98-109 32-43 (189)
152 PRK01844 hypothetical protein; 39.3 66 0.0014 25.4 4.5 28 95-122 5-32 (72)
153 PF04639 Baculo_E56: Baculovir 39.2 14 0.00031 36.4 1.0 31 90-120 272-302 (305)
154 PF00628 PHD: PHD-finger; Int 38.8 14 0.00031 26.0 0.8 42 177-219 2-49 (51)
155 cd00065 FYVE FYVE domain; Zinc 37.7 28 0.0006 25.1 2.2 35 175-209 3-37 (57)
156 PHA03240 envelope glycoprotein 37.7 39 0.00085 32.2 3.6 34 91-124 210-243 (258)
157 PF00412 LIM: LIM domain; Int 37.6 18 0.00039 25.9 1.2 39 177-225 1-39 (58)
158 PF04710 Pellino: Pellino; In 37.0 11 0.00025 38.7 0.0 50 174-224 328-402 (416)
159 PF12877 DUF3827: Domain of un 36.8 21 0.00046 38.9 2.0 18 315-332 439-456 (684)
160 KOG2068 MOT2 transcription fac 36.7 31 0.00067 34.7 3.0 49 174-223 249-298 (327)
161 PRK00523 hypothetical protein; 36.6 72 0.0016 25.2 4.4 28 95-122 6-33 (72)
162 PF01363 FYVE: FYVE zinc finge 35.6 15 0.00033 27.7 0.5 36 173-208 8-43 (69)
163 PF15176 LRR19-TM: Leucine-ric 35.5 60 0.0013 27.3 4.0 31 93-123 15-45 (102)
164 PF06844 DUF1244: Protein of u 35.2 23 0.0005 27.5 1.4 12 199-210 11-22 (68)
165 PF01299 Lamp: Lysosome-associ 33.8 28 0.00062 34.3 2.2 23 102-124 277-299 (306)
166 PLN02189 cellulose synthase 33.4 36 0.00078 39.3 3.1 50 173-223 33-87 (1040)
167 PF04710 Pellino: Pellino; In 31.9 15 0.00033 37.8 0.0 45 173-221 276-337 (416)
168 PF15050 SCIMP: SCIMP protein 31.7 77 0.0017 27.6 4.2 34 92-126 8-41 (133)
169 PF07204 Orthoreo_P10: Orthore 31.7 38 0.00082 28.1 2.2 31 93-123 39-69 (98)
170 PF02439 Adeno_E3_CR2: Adenovi 31.4 1.1E+02 0.0025 21.2 4.1 27 98-124 6-32 (38)
171 KOG3579 Predicted E3 ubiquitin 30.7 28 0.00061 34.5 1.6 51 174-224 268-329 (352)
172 PF10717 ODV-E18: Occlusion-de 30.0 66 0.0014 26.1 3.3 17 89-105 20-36 (85)
173 smart00064 FYVE Protein presen 29.7 49 0.0011 24.8 2.5 37 174-210 10-46 (68)
174 KOG3842 Adaptor protein Pellin 29.6 25 0.00054 35.3 1.0 42 173-220 289-349 (429)
175 PF13719 zinc_ribbon_5: zinc-r 29.0 29 0.00062 23.5 0.9 26 176-201 4-36 (37)
176 COG3357 Predicted transcriptio 27.8 26 0.00057 28.9 0.7 27 196-226 64-90 (97)
177 KOG2041 WD40 repeat protein [G 27.7 41 0.00088 37.5 2.2 46 173-222 1130-1184(1189)
178 PF01708 Gemini_mov: Geminivir 27.6 1.2E+02 0.0026 25.0 4.4 27 91-117 34-60 (91)
179 PF06365 CD34_antigen: CD34/Po 27.6 61 0.0013 30.5 3.2 28 95-122 101-128 (202)
180 PF02009 Rifin_STEVOR: Rifin/s 27.3 87 0.0019 31.2 4.4 28 97-124 256-283 (299)
181 COG3763 Uncharacterized protei 26.9 1.4E+02 0.0031 23.4 4.6 23 97-119 7-29 (71)
182 PF04423 Rad50_zn_hook: Rad50 26.4 22 0.00047 25.9 -0.0 13 214-226 22-34 (54)
183 PF15179 Myc_target_1: Myc tar 26.0 1E+02 0.0022 28.7 4.2 31 93-123 20-50 (197)
184 TIGR02976 phageshock_pspB phag 26.0 1.3E+02 0.0028 23.9 4.3 12 109-120 16-27 (75)
185 PRK11827 hypothetical protein; 25.7 25 0.00054 26.8 0.2 20 206-225 2-21 (60)
186 PF14569 zf-UDP: Zinc-binding 25.5 96 0.0021 24.9 3.4 50 173-222 8-61 (80)
187 PF14311 DUF4379: Domain of un 25.4 46 0.00099 24.2 1.6 25 193-218 31-55 (55)
188 PF07406 NICE-3: NICE-3 protei 25.0 92 0.002 28.9 3.8 34 90-124 7-40 (186)
189 PF11023 DUF2614: Protein of u 24.4 1.6E+02 0.0034 25.3 4.8 19 209-227 82-100 (114)
190 cd00350 rubredoxin_like Rubred 24.4 37 0.00079 22.3 0.8 19 196-220 7-25 (33)
191 COG3813 Uncharacterized protei 24.1 1.2E+02 0.0026 24.1 3.7 50 175-227 6-56 (84)
192 PF13314 DUF4083: Domain of un 23.8 2E+02 0.0043 21.8 4.6 11 112-122 23-33 (58)
193 PF14914 LRRC37AB_C: LRRC37A/B 23.8 1.3E+02 0.0028 27.0 4.3 29 94-122 120-148 (154)
194 PLN02436 cellulose synthase A 23.7 67 0.0015 37.3 3.1 50 173-223 35-89 (1094)
195 PF12768 Rax2: Cortical protei 23.5 1.6E+02 0.0034 29.1 5.3 29 94-122 229-257 (281)
196 PF07191 zinc-ribbons_6: zinc- 23.4 6.4 0.00014 30.9 -3.4 40 175-223 2-41 (70)
197 PRK11114 cellulose synthase re 23.3 37 0.00081 37.9 1.1 62 2-69 649-713 (756)
198 PF15048 OSTbeta: Organic solu 23.2 1.2E+02 0.0026 26.4 3.9 23 106-128 45-67 (125)
199 KOG1094 Discoidin domain recep 23.0 1.4E+02 0.003 33.0 5.1 8 96-103 392-399 (807)
200 PF04689 S1FA: DNA binding pro 22.6 74 0.0016 24.6 2.2 33 89-121 8-40 (69)
201 PF08374 Protocadherin: Protoc 21.9 76 0.0016 30.3 2.6 11 95-105 37-47 (221)
202 PHA02902 putative IMV membrane 21.9 3E+02 0.0065 21.4 5.4 10 150-159 53-62 (70)
203 PF06750 DiS_P_DiS: Bacterial 21.7 60 0.0013 26.5 1.7 40 174-226 33-72 (92)
204 TIGR01478 STEVOR variant surfa 21.3 1.2E+02 0.0026 30.1 4.0 31 99-129 263-293 (295)
205 KOG1356 Putative transcription 20.7 37 0.0008 38.2 0.4 35 173-209 228-262 (889)
206 KOG4185 Predicted E3 ubiquitin 20.7 19 0.00041 35.1 -1.7 49 174-222 207-266 (296)
207 PF05393 Hum_adeno_E3A: Human 20.6 1.4E+02 0.0031 24.5 3.6 17 109-125 50-66 (94)
208 PF05454 DAG1: Dystroglycan (D 20.3 34 0.00074 33.9 0.0 25 10-34 51-77 (290)
209 PF06024 DUF912: Nucleopolyhed 20.2 32 0.0007 28.6 -0.2 44 87-130 56-99 (101)
210 PHA03099 epidermal growth fact 20.1 76 0.0017 27.9 2.1 17 106-122 113-129 (139)
211 PHA02849 putative transmembran 20.0 2.2E+02 0.0047 22.9 4.4 6 91-96 12-17 (82)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.5e-18 Score=165.99 Aligned_cols=74 Identities=36% Similarity=0.840 Sum_probs=66.2
Q ss_pred CCCHHHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216 150 NPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT 225 (379)
Q Consensus 150 ~l~~~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~ 225 (379)
.+.++.++++|..+|.+..+.... +.|+||||+|..|+++|+|| |+|.||..|||+||.++. .||+||+++...
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 566899999999999998876544 79999999999999999999 999999999999999875 599999987654
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.46 E-value=1.7e-14 Score=102.12 Aligned_cols=44 Identities=48% Similarity=1.178 Sum_probs=40.5
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCR 219 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR 219 (379)
++|+||+++|..++.+..++ |||+||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.26 E-value=4.7e-12 Score=120.29 Aligned_cols=74 Identities=30% Similarity=0.644 Sum_probs=56.9
Q ss_pred CCCHHHHhhCCceeeccccc-CCCCCCcCccccccccCCC----ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 150 NPAFSVMDSLPLFAFSSVSR-RSSSGGDCAICLFKFEPHD----QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 150 ~l~~~~i~slP~~~~~~~~~-~~~~~~~C~ICl~~~~~~~----~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
+..+..++.+|.+...-... ....+.+|+||++++.... .+.+++.|+|.||..||..|+..+.+||+||.++.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 45788999999987554322 2235679999999986543 12345459999999999999999999999999775
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3e-11 Score=119.05 Aligned_cols=69 Identities=33% Similarity=0.806 Sum_probs=52.9
Q ss_pred HHHhhCCceeecccccCCCCCCcCcccccc-ccCC---------CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFK-FEPH---------DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 154 ~~i~slP~~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
+.-+-+|..+..+. ..++..|.||+++ |+.+ .+.+.|| |||+||.+|++.|++++++||+||.++.
T Consensus 270 dl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 270 DLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred HHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 34444555544433 3478899999999 5544 2467899 9999999999999999999999999976
Q ss_pred CCc
Q 037216 224 ATE 226 (379)
Q Consensus 224 ~~~ 226 (379)
.++
T Consensus 346 fd~ 348 (491)
T COG5243 346 FDQ 348 (491)
T ss_pred ccc
Confidence 653
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.19 E-value=1.1e-11 Score=97.36 Aligned_cols=46 Identities=46% Similarity=0.971 Sum_probs=36.2
Q ss_pred CCCcCccccccccCC----------CceeecCCCCCcccHHHHHHHHhcCCCCCCcC
Q 037216 173 SGGDCAICLFKFEPH----------DQLRLLPLCCHAFHARCIDTWLESNLTCPLCR 219 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~----------~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR 219 (379)
.++.|+||++++... -.+.+.+ |||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 355799999999321 2344455 999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-11 Score=119.31 Aligned_cols=51 Identities=47% Similarity=1.104 Sum_probs=46.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~ 224 (379)
.+-+|+|||+.|..++++++|| |.|.||..|+++|+.. +..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4679999999999999999999 9999999999999984 6799999998865
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.89 E-value=1e-09 Score=79.74 Aligned_cols=46 Identities=37% Similarity=0.900 Sum_probs=39.5
Q ss_pred CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
+..|.||++.. ..+.++| |||. |+..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB---SSEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccC---CceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46899999886 5678888 9999 999999999999999999999874
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.88 E-value=1.8e-09 Score=74.53 Aligned_cols=44 Identities=57% Similarity=1.300 Sum_probs=36.9
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l 222 (379)
+|+||++.+ .+...+.+ |||.||..|++.|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 24555565 9999999999999987 77899999864
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.8e-09 Score=101.68 Aligned_cols=49 Identities=31% Similarity=0.737 Sum_probs=42.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|.+||+.. .....+| |||+||..||..|+..+..||+||....+.
T Consensus 238 a~~kC~LCLe~~---~~pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENR---SNPSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCC---CCCCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 457899999987 5667778 999999999999999999999999987654
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2e-09 Score=97.03 Aligned_cols=54 Identities=30% Similarity=0.641 Sum_probs=43.6
Q ss_pred CCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 170 RSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 170 ~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+..-.-|+|||+.+.. ++.+-.+|||+||..||..-++...+||+||..|..+
T Consensus 127 ~~~~~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccccCCCceecchhh--ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34456789999999963 3434346999999999999999999999999877654
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.82 E-value=3.2e-09 Score=97.63 Aligned_cols=49 Identities=31% Similarity=0.684 Sum_probs=40.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----------------CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----------------NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----------------~~~CP~CR~~l~~~ 225 (379)
++.+|+||++.+ +...+++ |||.||..||..|+.. +..||+||.++...
T Consensus 17 ~~~~CpICld~~---~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 17 GDFDCNICLDQV---RDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CccCCccCCCcC---CCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 567999999988 4455677 9999999999999852 24799999988653
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.77 E-value=4.2e-09 Score=84.74 Aligned_cols=53 Identities=36% Similarity=0.860 Sum_probs=40.5
Q ss_pred CCCcCcccccccc--------CCCc-eeecCCCCCcccHHHHHHHHhc---CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFE--------PHDQ-LRLLPLCCHAFHARCIDTWLES---NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~--------~~~~-~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~~l~~~ 225 (379)
.++.|.||...|. +|+. ..++-.|+|.||..||.+||.+ +..||+||+++..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 4778999998886 2332 2233349999999999999986 46899999987654
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=3.9e-09 Score=72.81 Aligned_cols=39 Identities=41% Similarity=1.057 Sum_probs=32.3
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLC 218 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~C 218 (379)
|+||++.+.+ .+..++ |||.||.+||..|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998853 446777 99999999999999998999998
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.5e-09 Score=96.98 Aligned_cols=50 Identities=28% Similarity=0.633 Sum_probs=40.5
Q ss_pred CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC---CCCCCcCcCCcCC
Q 037216 172 SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN---LTCPLCRSPIIAT 225 (379)
Q Consensus 172 ~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~~l~~~ 225 (379)
....+|.|||+.- +..++.. |||.||.-||-+||+.+ +.||+||..+..+
T Consensus 45 ~~~FdCNICLd~a---kdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLA---KDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeecccc---CCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 3678999998886 4455555 99999999999999863 4689999987654
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.9e-09 Score=109.74 Aligned_cols=51 Identities=37% Similarity=0.893 Sum_probs=45.0
Q ss_pred CCCcCccccccccCCCc--eeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQ--LRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~--~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.+..|+||++++..+.+ .+.|| |+|+||..|+..|++++++||+||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 57799999999977654 78898 99999999999999999999999995543
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.65 E-value=1.7e-08 Score=94.20 Aligned_cols=51 Identities=29% Similarity=0.722 Sum_probs=39.4
Q ss_pred CCCcCccccccccCC-----CceeecCCCCCcccHHHHHHHHhcC------CCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPH-----DQLRLLPLCCHAFHARCIDTWLESN------LTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~-----~~~~~Lp~C~H~FH~~Ci~~WL~~~------~~CP~CR~~l~ 223 (379)
.+.+|.|||+..... ..--+|+.|+|.||..||+.|...+ .+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 568999999986432 1234666699999999999999753 45999999764
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.63 E-value=2.5e-08 Score=70.70 Aligned_cols=44 Identities=32% Similarity=0.877 Sum_probs=38.1
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
.|.||+++|.+....++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999996666788888 9999999999998755679999985
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.58 E-value=5.6e-08 Score=73.08 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=39.9
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
..|+||.+.+.+ ..+++ |||+|++.||..|+..+.+||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 479999999854 45677 99999999999999988999999998744
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.57 E-value=4.9e-08 Score=64.92 Aligned_cols=38 Identities=47% Similarity=1.173 Sum_probs=33.0
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLC 218 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~C 218 (379)
|+||++.. ....+++ |||.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88998883 6777888 999999999999998 56789988
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=6e-08 Score=67.17 Aligned_cols=39 Identities=51% Similarity=1.251 Sum_probs=32.7
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHh--cCCCCCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE--SNLTCPLC 218 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~--~~~~CP~C 218 (379)
|+||++.+.. ..++++ |||.||..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999853 335777 999999999999998 45689998
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.52 E-value=6.8e-08 Score=68.02 Aligned_cols=38 Identities=37% Similarity=0.938 Sum_probs=29.5
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLC 218 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~C 218 (379)
|+||++-| .+...|+ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~---~~Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 6677888 99999999999999763 369988
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=2.6e-07 Score=93.97 Aligned_cols=48 Identities=33% Similarity=0.661 Sum_probs=41.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+||++.|. ...+++ |||.||..||..|+.....||+||..+..
T Consensus 25 ~~l~C~IC~d~~~---~Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD---VPVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh---CccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 5679999999984 445677 99999999999999988899999998754
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4e-07 Score=93.06 Aligned_cols=51 Identities=35% Similarity=0.973 Sum_probs=39.2
Q ss_pred CCCcCccccccccC---CCc-----------eeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEP---HDQ-----------LRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~---~~~-----------~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~ 224 (379)
...+|+||+.++.. +.. -.+.| |.|+||..|+..|+..- -.||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45699999988742 111 12457 99999999999999854 499999999864
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.32 E-value=3.9e-07 Score=72.13 Aligned_cols=51 Identities=37% Similarity=0.801 Sum_probs=37.5
Q ss_pred CcCccccccc-----------cCCCcee-ecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 175 GDCAICLFKF-----------EPHDQLR-LLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 175 ~~C~ICl~~~-----------~~~~~~~-~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
+.|+||...+ .+++++. ..-.|.|.||..||.+||..+..||+||+++...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 4666666554 3444332 2223999999999999999999999999987643
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.8e-07 Score=71.60 Aligned_cols=52 Identities=38% Similarity=0.888 Sum_probs=38.2
Q ss_pred CCCcCcccccccc--------CCCce-eecCCCCCcccHHHHHHHHhc---CCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFE--------PHDQL-RLLPLCCHAFHARCIDTWLES---NLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~--------~~~~~-~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~~l~~ 224 (379)
.++.|-||.-+|. +|+.+ .++-.|.|.||..||.+|+.. +..||+||+.+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4558999988885 23322 233349999999999999965 4579999997653
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.19 E-value=1e-06 Score=62.49 Aligned_cols=38 Identities=32% Similarity=0.854 Sum_probs=22.6
Q ss_pred CccccccccCCC-ceeecCCCCCcccHHHHHHHHhcC----CCCC
Q 037216 177 CAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESN----LTCP 216 (379)
Q Consensus 177 C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP 216 (379)
|+||.+ |...+ ...+|+ |||+|+++||+.++... -+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 568899 99999999999999743 2576
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.9e-07 Score=84.92 Aligned_cols=50 Identities=28% Similarity=0.714 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHH-HHhcCC-CCCCcCcCCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT-WLESNL-TCPLCRSPIIATE 226 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~-WL~~~~-~CP~CR~~l~~~~ 226 (379)
.+..|+||++.. .....++ |||+||..||.. |-.++. .||+||+....++
T Consensus 214 ~d~kC~lC~e~~---~~ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEP---EVPSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeeccc---CCccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 467899998887 5666777 999999999999 887665 4999999877653
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-06 Score=90.18 Aligned_cols=48 Identities=31% Similarity=0.582 Sum_probs=37.5
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~~l~~~ 225 (379)
+..|+|||++... ...+ .|||+||..||-.++.. ...||+||..|..+
T Consensus 186 ~~~CPICL~~~~~---p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCc---cccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 6799999998632 2223 39999999999998864 35799999988664
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.09 E-value=2.7e-06 Score=61.88 Aligned_cols=42 Identities=26% Similarity=0.780 Sum_probs=32.7
Q ss_pred cCccccccccCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCCCcC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCC-----HAFHARCIDTWLESN--LTCPLCR 219 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~-----H~FH~~Ci~~WL~~~--~~CP~CR 219 (379)
.|.||++. ..++...+.| |. |.+|..|++.|+... .+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999983 3444555788 85 899999999999654 4899995
No 30
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.8e-06 Score=85.55 Aligned_cols=48 Identities=35% Similarity=0.800 Sum_probs=41.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
+..+|+||+++- ..+.+|| |.|. .|..|.+..--+++.||+||+++.+
T Consensus 289 ~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 467999998886 6788999 9997 9999999965678899999998854
No 31
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.7e-07 Score=84.45 Aligned_cols=51 Identities=31% Similarity=0.674 Sum_probs=41.2
Q ss_pred CCCCcCccccccccCCC-------ceeecCCCCCcccHHHHHHHHh--cCCCCCCcCcCCc
Q 037216 172 SSGGDCAICLFKFEPHD-------QLRLLPLCCHAFHARCIDTWLE--SNLTCPLCRSPII 223 (379)
Q Consensus 172 ~~~~~C~ICl~~~~~~~-------~~~~Lp~C~H~FH~~Ci~~WL~--~~~~CP~CR~~l~ 223 (379)
.++..|+||-..+.... ++-.|. |+|+||..||+-|-. ++.+||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 36789999998876544 566777 999999999999964 4679999987664
No 32
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.96 E-value=1.6e-06 Score=94.10 Aligned_cols=51 Identities=35% Similarity=0.818 Sum_probs=37.7
Q ss_pred CCCcCccccccccC-CCc--eeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEP-HDQ--LRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~-~~~--~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~ 223 (379)
+..+|+||+.-+.. +.. -...+.|.|.||..|+.+|++. +++||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 56799999887641 111 1122339999999999999986 568999998764
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=6.6e-06 Score=80.94 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=37.0
Q ss_pred CCcCccccccccCCCc--eeecCCCCCcccHHHHHHHHh-cCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQ--LRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~--~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~l~~~ 225 (379)
+..|+||...-..... +-+-+ |||.||..||+..+. ....||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4689999986333333 33335 999999999999654 356899998877543
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.90 E-value=6.4e-06 Score=64.56 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=38.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
....|+||.+-| ....++| +||.|.+.||..||.. +.+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM---~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELM---RDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB----SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHh---hCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 356899999999 6667888 9999999999999998 88999999988654
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.80 E-value=9.7e-06 Score=78.45 Aligned_cols=48 Identities=29% Similarity=0.543 Sum_probs=39.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.-..|-||-+-| ....+.+ |||.||.-||...|..+..||+||.+..+
T Consensus 24 s~lrC~IC~~~i---~ip~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRI---SIPCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhhee---ecceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 345799998877 3444556 99999999999999999999999986543
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.9e-06 Score=76.05 Aligned_cols=44 Identities=41% Similarity=0.875 Sum_probs=38.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
....|+||++.|... .++| |||.||..|+..++.....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 567999999999654 8888 9999999999999875568999993
No 37
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.79 E-value=7.4e-06 Score=80.68 Aligned_cols=48 Identities=29% Similarity=0.691 Sum_probs=41.7
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
--.|-||.+-| ....+.| |+|.||.-||+.+|..+..||.|+.++.+.
T Consensus 23 lLRC~IC~eyf---~ip~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYF---NIPMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHh---cCceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 34799999988 5666788 999999999999999999999999877654
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.79 E-value=4e-06 Score=65.45 Aligned_cols=52 Identities=31% Similarity=0.634 Sum_probs=24.8
Q ss_pred CCcCcccccccc-CCCc-eeec--CCCCCcccHHHHHHHHhc---C--------CCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFE-PHDQ-LRLL--PLCCHAFHARCIDTWLES---N--------LTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~-~~~~-~~~L--p~C~H~FH~~Ci~~WL~~---~--------~~CP~CR~~l~~~ 225 (379)
+.+|.||++.+. .++. ..+- +.|++.||..||..||.. . .+||.|+.+|..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 358999999876 3332 2222 259999999999999964 1 1499999988653
No 39
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3.9e-06 Score=83.35 Aligned_cols=44 Identities=27% Similarity=0.584 Sum_probs=33.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
..+.|.||+++. .....+| |||+-| |...- +...+||+||+.|.
T Consensus 304 ~p~lcVVcl~e~---~~~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEP---KSAVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCc---cceeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 567899999987 4578899 999965 66663 33456999998764
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.68 E-value=1.4e-05 Score=81.21 Aligned_cols=48 Identities=27% Similarity=0.775 Sum_probs=39.2
Q ss_pred CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
+...|+|||+.+.... -++... |.|.||..|+..|- ..+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 5668999999997554 234455 99999999999998 569999998766
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.6e-05 Score=58.72 Aligned_cols=46 Identities=28% Similarity=0.558 Sum_probs=34.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHh-cCCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLE-SNLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~-~~~~CP~CR~~l 222 (379)
-+++|.||++.- ..-.+.. |||. .|.+|-..-++ .+..||+||++|
T Consensus 6 ~~dECTICye~p---vdsVlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 6 WSDECTICYEHP---VDSVLYT-CGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cccceeeeccCc---chHHHHH-cchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 347999997764 3333444 9998 89999777555 578999999986
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.4e-05 Score=78.38 Aligned_cols=45 Identities=33% Similarity=0.911 Sum_probs=33.9
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc---CCCCCCcC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES---NLTCPLCR 219 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR 219 (379)
..|.||.+-+.....+.-+-.|||+||..|+..|+.. +.+||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 5899995444433445444349999999999999975 45899998
No 43
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.6e-05 Score=64.75 Aligned_cols=52 Identities=31% Similarity=0.661 Sum_probs=37.6
Q ss_pred CCCcCcccccccc------------CCCce-eecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFE------------PHDQL-RLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~------------~~~~~-~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.-+.|+||..-+- ..+++ ..--.|+|.||..||..||++++.||+|-+++..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 3467999875431 11222 2222399999999999999999999999887754
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=1.1e-05 Score=79.85 Aligned_cols=49 Identities=33% Similarity=0.576 Sum_probs=41.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~ 224 (379)
.+..|+|||+-+ +..+..+.|.|-||.+||..-++. ++.||.||+.+..
T Consensus 42 ~~v~c~icl~ll---k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLL---KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHH---HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 567899999988 555666679999999999998875 7899999997753
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=5.9e-05 Score=75.57 Aligned_cols=50 Identities=34% Similarity=0.909 Sum_probs=39.7
Q ss_pred CCCcCccccccccCCC----ceeecCCCCCcccHHHHHHHH--hc-----CCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHD----QLRLLPLCCHAFHARCIDTWL--ES-----NLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~----~~~~Lp~C~H~FH~~Ci~~WL--~~-----~~~CP~CR~~l 222 (379)
.+..|.||++...... ...+||.|.|.||..||+.|- .+ .+.||.||...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 5779999999875433 135667899999999999998 44 47899999865
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.45 E-value=2.7e-05 Score=83.51 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=41.4
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|++||..+.++......+ |+|.||..||+.|-+...+||+||..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 446999999987666665666 9999999999999999999999998653
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.39 E-value=5.3e-05 Score=73.71 Aligned_cols=53 Identities=32% Similarity=0.821 Sum_probs=43.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-----------------------cCCCCCCcCcCCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-----------------------SNLTCPLCRSPIIATE 226 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-----------------------~~~~CP~CR~~l~~~~ 226 (379)
...+|+|||.-|..++...+.+ |-|.||..|+..+|. .+-.||+||..|..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 4569999999999988888888 999999999998882 1225999999886544
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=8.6e-05 Score=72.36 Aligned_cols=49 Identities=33% Similarity=0.560 Sum_probs=39.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
...+|+||+... .....|+ |+|.||..||.--... ..+|++||.+|..+
T Consensus 6 ~~~eC~IC~nt~---n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTG---NCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccC---CcCcccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 356999997775 5556777 9999999999986654 45799999998653
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00014 Score=73.51 Aligned_cols=48 Identities=33% Similarity=0.885 Sum_probs=36.7
Q ss_pred CCCcCccccccccC-CCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCc
Q 037216 173 SGGDCAICLFKFEP-HDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~-~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~ 220 (379)
....|+|||+.+.. +++....+.|||.|..+||+.||.+ ...||.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 35689999999864 4444444459999999999999963 246999954
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.06 E-value=0.00014 Score=55.76 Aligned_cols=48 Identities=27% Similarity=0.627 Sum_probs=23.7
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCcc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET 227 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~~ 227 (379)
--|.+|.+-+ ++...+..|.|+||..||..-+. ..||+|+.+.-.++-
T Consensus 8 LrCs~C~~~l---~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDIL---KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S-----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred cCCcHHHHHh---cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence 4799998887 55555556999999999988553 469999987765543
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.06 E-value=0.0002 Score=72.13 Aligned_cols=48 Identities=35% Similarity=0.878 Sum_probs=39.9
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCcCCcc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPIIATET 227 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~~~~~ 227 (379)
.|.||-+. ++.+++-| |||..|..|+..|-.. .++||.||..|-..+.
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 49999665 46788888 9999999999999854 5699999998876654
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00051 Score=70.23 Aligned_cols=48 Identities=31% Similarity=0.772 Sum_probs=41.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.+.+|.||+..+ .....+| |||.||..||++-+.+..-||+||..+..
T Consensus 83 sef~c~vc~~~l---~~pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRAL---YPPVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhc---CCCcccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 678999998887 4556678 99999999999988877889999999875
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00038 Score=75.11 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=36.4
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
-.|++|-..+ +.+.+. +|||+||..||..-+.. +.+||.|-..+.+.
T Consensus 644 LkCs~Cn~R~---Kd~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRW---KDAVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCch---hhHHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4699996554 445444 59999999999998864 77999998877554
No 54
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.83 E-value=0.00073 Score=76.57 Aligned_cols=69 Identities=25% Similarity=0.569 Sum_probs=51.6
Q ss_pred HHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----------CCCCCcCcCCc
Q 037216 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----------LTCPLCRSPII 223 (379)
Q Consensus 154 ~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----------~~CP~CR~~l~ 223 (379)
....-||-+...+.......++.|.||+.+-......+.|- |+|+||..|.+.-|... -+||+|+.+|.
T Consensus 3466 NEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3466 NEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred chhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 34455777776555555557889999987765556677887 99999999999877542 26999999875
No 55
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0014 Score=61.78 Aligned_cols=52 Identities=27% Similarity=0.689 Sum_probs=43.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--------CCCCCCcCcCCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--------NLTCPLCRSPIIATE 226 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--------~~~CP~CR~~l~~~~ 226 (379)
-...|..|--.+..++.+|+. |-|+||.+|+++|-.. ...||.|-.+|++.-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 456899999999999988776 9999999999999854 347999999988654
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.52 E-value=0.0017 Score=66.51 Aligned_cols=50 Identities=28% Similarity=0.592 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+..|++|...+.+.... .. |||.||..|+..|+..+..||.|+..+...
T Consensus 20 ~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred ccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchh
Confidence 567899999988543332 34 999999999999999999999998877544
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0032 Score=63.94 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=38.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--------CCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--------LTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--------~~CP~CR~~ 221 (379)
...+|.||+++.........|| |+|+||+.|+..++..+ -+||-|.-.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 5679999999976556788999 99999999999998542 268877554
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.32 E-value=0.0014 Score=66.09 Aligned_cols=46 Identities=39% Similarity=0.860 Sum_probs=38.4
Q ss_pred CCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcC--CCCCCcCc
Q 037216 174 GGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESN--LTCPLCRS 220 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~ 220 (379)
+--|..|-+.+...+ .+.-|| |.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 446999998886544 678899 99999999999999764 58999994
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.17 E-value=0.0028 Score=47.54 Aligned_cols=42 Identities=29% Similarity=0.604 Sum_probs=26.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPL 217 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~ 217 (379)
....|+|.+..|. +.++-. .|||+|-++.|..||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~--~PV~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE--DPVKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S--SEEEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhh--CCcCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4568999999995 334434 49999999999999944 347998
No 60
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.14 E-value=0.0019 Score=56.45 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=33.1
Q ss_pred CCcCccccccccCCCceeecCCCC------CcccHHHHHHHHhcCCCCCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCC------HAFHARCIDTWLESNLTCPLC 218 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~------H~FH~~Ci~~WL~~~~~CP~C 218 (379)
..+|.||++.+..++-++.++ || |+||.+|+.+|-+.++.=|-=
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfn 75 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFN 75 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence 569999999998856666777 66 789999999995444333433
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.95 E-value=0.0079 Score=59.95 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=49.6
Q ss_pred HHHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHH--HhcCCCCCCcCcCC
Q 037216 153 FSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW--LESNLTCPLCRSPI 222 (379)
Q Consensus 153 ~~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W--L~~~~~CP~CR~~l 222 (379)
+..+..-|..+.++..+...+...|.||-+.. .-..++| |+|..|..|--.- |..++.||+||...
T Consensus 40 KNnlsaEPnlttsSaddtDEen~~C~ICA~~~---TYs~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 40 KNNLSAEPNLTTSSADDTDEENMNCQICAGST---TYSARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccCCccccccccccccccceeEEecCCc---eEEEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 44556667777766666666677899998776 4567889 9999999997552 44578999999865
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0029 Score=56.84 Aligned_cols=41 Identities=29% Similarity=0.715 Sum_probs=31.9
Q ss_pred CceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccH
Q 037216 160 PLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHA 202 (379)
Q Consensus 160 P~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~ 202 (379)
|.+.|++.... ....+|+||||++..++.+..|| |-.+||+
T Consensus 164 PrlsYNdDVL~-ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLK-DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccchhc-ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 45555543322 25679999999999999999999 9999996
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0098 Score=59.44 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=48.0
Q ss_pred HHHhhCCceeeccccc-CC-CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 154 SVMDSLPLFAFSSVSR-RS-SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 154 ~~i~slP~~~~~~~~~-~~-~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
..++.+|..+-....+ .. .++..|+||+.. .-.....| |+|.-|..||.+-|...+.|=.|+..+..
T Consensus 400 r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 400 RASSQLPERKEESFNKDLPDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred HHHhhcchhhHHhhcCCCCCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3445555544333222 22 367889999543 35566778 99999999999999999999999998764
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.016 Score=55.38 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=47.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATE 226 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~ 226 (379)
..+.|+||.+.+.+...+..|..|||+|+.+|+...+..-..||+|-.++...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 356799999999988888888779999999999998888889999988876653
No 65
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.041 Score=54.65 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=36.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
....|+||+....++. ++.--|-+||..||-.++..++.||+=-.+.
T Consensus 299 ~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 5668999998875332 2222699999999999999999999865443
No 66
>PHA02862 5L protein; Provisional
Probab=95.36 E-value=0.013 Score=51.79 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=34.7
Q ss_pred CCcCccccccccCCCceeecCCCC-----CcccHHHHHHHHhc--CCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCC-----HAFHARCIDTWLES--NLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~-----H~FH~~Ci~~WL~~--~~~CP~CR~~l~~~ 225 (379)
++.|-||+++-.+. .-| |. ..-|.+|+..|+.. +..|++|+.+..-+
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 36899999885322 345 54 36899999999965 45899999877544
No 67
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.12 E-value=0.014 Score=42.03 Aligned_cols=40 Identities=33% Similarity=0.865 Sum_probs=26.9
Q ss_pred CccccccccCCCceeecCCCC--C---cccHHHHHHHHhc--CCCCCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCC--H---AFHARCIDTWLES--NLTCPLC 218 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~--H---~FH~~Ci~~WL~~--~~~CP~C 218 (379)
|-||+++-.... .-+.| |+ - ..|..|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789998876555 33455 65 2 6899999999974 5679987
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.06 E-value=0.0082 Score=49.30 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=26.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCID 206 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~ 206 (379)
.+..|++|-..+.. ....+.| |||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 46689999999976 4566778 99999999975
No 69
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.04 E-value=0.0067 Score=66.35 Aligned_cols=48 Identities=31% Similarity=0.761 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-------CCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-------LTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-------~~CP~CR~ 220 (379)
...+|.||++.+.....+.--..|-|+||..||..|-++. -.||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 5679999999997766665444489999999999998652 15999984
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.99 E-value=0.013 Score=61.31 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=38.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~~l~~~ 225 (379)
+..+|-+|-++- +...... |.|.||+.||..++.. +-+||.|...+.-+
T Consensus 535 ~~~~C~lc~d~a---ed~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPA---EDYIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChh---hhhHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 567899998775 4444555 9999999999888753 45899998877654
No 71
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.081 Score=51.44 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=35.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~ 223 (379)
.+.+|++|-+.-.. .-...+ |||+||.-||..=+.. .-+||.|-.+..
T Consensus 238 ~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 67899999776432 223444 9999999999986643 258999977654
No 72
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.80 E-value=0.012 Score=54.69 Aligned_cols=45 Identities=20% Similarity=0.445 Sum_probs=37.3
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
...|-||-.+| +..++.. |||.||..|...=++....|-+|-...
T Consensus 196 PF~C~iCKkdy---~spvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDY---ESPVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhc---cchhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 45799999999 5555666 999999999988788788999997643
No 73
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.0053 Score=59.88 Aligned_cols=42 Identities=31% Similarity=0.627 Sum_probs=33.5
Q ss_pred CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|+||++.- ..+..|+ |||. -|.+|-.. -+.||+||+-|.
T Consensus 300 ~~LC~ICmDaP---~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 55799997664 7889999 9996 88888665 348999998653
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.71 E-value=0.035 Score=53.78 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=40.3
Q ss_pred CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 172 SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 172 ~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.....|+|+..+|........|-.|||+|...+|.. +.....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke-~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKE-LKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHh-hcccccccccCCccccC
Confidence 367789999999965555555534999999999999 44356899998876543
No 75
>PHA03096 p28-like protein; Provisional
Probab=94.68 E-value=0.018 Score=56.69 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=34.3
Q ss_pred CcCccccccccCC----CceeecCCCCCcccHHHHHHHHhc---CCCCCCcCc
Q 037216 175 GDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLES---NLTCPLCRS 220 (379)
Q Consensus 175 ~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~ 220 (379)
..|.||++..... ..--+|+.|.|.||..||..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999987543 234578889999999999999854 335555554
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.66 E-value=0.028 Score=40.81 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=21.4
Q ss_pred CccccccccCCC-ceeecCCCCCcccHHHHHHHHh-cCCCCCCcCcC
Q 037216 177 CAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSP 221 (379)
Q Consensus 177 C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~ 221 (379)
|++|.+++...+ ...--+ ||+.++..|...-+. ....||-||.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999994333 333334 889999999888554 36789999986
No 77
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.54 E-value=0.015 Score=55.33 Aligned_cols=44 Identities=30% Similarity=0.645 Sum_probs=32.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
.|..|..--. ++...++. |+|+||..|...-. ...||+|+.++-
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 5887765433 56666666 99999999977622 349999999863
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.26 E-value=0.049 Score=49.01 Aligned_cols=48 Identities=23% Similarity=0.628 Sum_probs=34.3
Q ss_pred CCCcCccccccccCCCceeecC-CCCC---cccHHHHHHHHhc--CCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLP-LCCH---AFHARCIDTWLES--NLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp-~C~H---~FH~~Ci~~WL~~--~~~CP~CR~~l~~ 224 (379)
.+..|-||.++-.. . ..| +|.. ..|.+|+..|+.. ...|++|+.+..-
T Consensus 7 ~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 56799999888532 2 234 1434 5799999999975 4579999886643
No 79
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.97 E-value=0.015 Score=57.67 Aligned_cols=50 Identities=28% Similarity=0.504 Sum_probs=38.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|.+|-.-|.+. ..+. .|-|-||+.||...|...+.||.|...+-..
T Consensus 14 ~~itC~LC~GYliDA--TTI~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA--TTIT-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecc--hhHH-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 456899998777432 2233 3999999999999999999999997766443
No 80
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.034 Score=54.45 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=38.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
..+.|-||...|. ..++.. |+|.||..|...=++....|.+|-+.+.
T Consensus 240 ~Pf~c~icr~~f~---~pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFY---RPVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccc---cchhhc-CCceeehhhhccccccCCcceecccccc
Confidence 4567999999994 444554 9999999998887877789999987654
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.17 E-value=0.047 Score=40.65 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=34.0
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
...|..|... +.+-.++| |||+.+..|.+- ..-+.||.|-.++...
T Consensus 7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccCC
Confidence 3456666443 34566888 999999999887 4457899999887654
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.15 E-value=0.053 Score=53.03 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+||.+.+.... .+..++ |||.-|..|+......+.+||+|.+ +..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 4556999999887666 566777 9999999999998888899999988 443
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.083 Score=51.61 Aligned_cols=47 Identities=30% Similarity=0.763 Sum_probs=38.3
Q ss_pred CcCccccccccCCC---ceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCC
Q 037216 175 GDCAICLFKFEPHD---QLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222 (379)
Q Consensus 175 ~~C~ICl~~~~~~~---~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l 222 (379)
..|.||-++|..++ ..+.|. |||.|+..|+..-+.. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 58999999998764 457776 9999999999986544 23799999985
No 84
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.09 E-value=0.054 Score=38.30 Aligned_cols=41 Identities=20% Similarity=0.546 Sum_probs=24.2
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHhcCC--CCCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL--TCPLC 218 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~--~CP~C 218 (379)
|.+|-+-...|....... |+=.+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678877777666554333 888999999999998755 79988
No 85
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.0075 Score=60.88 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=42.4
Q ss_pred CCcCccccccccCC-CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPH-DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~-~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
...|+||.+.+... +++..+- |||++|.+||.+||.....||.||..+.-
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 45799999888655 5666665 99999999999999999999999998864
No 86
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.07 Score=48.85 Aligned_cols=30 Identities=37% Similarity=0.970 Sum_probs=24.8
Q ss_pred CCCcccHHHHHHHHhcC-----------CCCCCcCcCCcCC
Q 037216 196 CCHAFHARCIDTWLESN-----------LTCPLCRSPIIAT 225 (379)
Q Consensus 196 C~H~FH~~Ci~~WL~~~-----------~~CP~CR~~l~~~ 225 (379)
||.-||.-|+..||+.- ..||.|-.++..+
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 99999999999999641 2599998887654
No 87
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.48 E-value=0.071 Score=52.40 Aligned_cols=43 Identities=30% Similarity=0.688 Sum_probs=32.8
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRS 220 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~ 220 (379)
..|+.|-.-+. .....|.|+|.||.+||..-|.. ...||.|..
T Consensus 275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 57999977763 23334679999999999977654 678999954
No 88
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.17 E-value=0.27 Score=36.62 Aligned_cols=45 Identities=27% Similarity=0.645 Sum_probs=35.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCC--cCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPL--CRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~--CR~~ 221 (379)
....|.+|-+.|.+++.+.+-|.||-.+|++|.+. ...|-. |..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 35689999999998888889999999999999544 456655 5443
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.40 E-value=0.11 Score=56.91 Aligned_cols=46 Identities=30% Similarity=0.693 Sum_probs=36.5
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCcCC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPIIAT 225 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~~~ 225 (379)
..|.||++ .+.+.+.+ |+|.||.+|+..-+.. ...||+||..+..+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 79999999 26666676 9999999999887754 23699999876543
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.13 Score=50.82 Aligned_cols=42 Identities=33% Similarity=0.795 Sum_probs=29.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
-|.-|--.+. ---|++| |.|+||.+|-.. ...+.||.|-..+
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 3777744431 2347888 999999999765 4467999995433
No 91
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.14 Score=48.26 Aligned_cols=40 Identities=35% Similarity=0.794 Sum_probs=31.0
Q ss_pred CccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
|-.|-+. +..+.++| |.|. +|..|-.. -..||+|+.+...
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888554 46788999 9997 99999665 3579999986543
No 92
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.11 Score=55.57 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=32.3
Q ss_pred CcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 175 GDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
-.|.||+..|..... .+.|- |||..|..|+..-. +.+|| |++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHh--hccCC-CCc
Confidence 479999999876553 34554 99999999999844 57999 655
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=0.16 Score=56.08 Aligned_cols=42 Identities=24% Similarity=0.766 Sum_probs=30.3
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
..|..|--.+.- ..+.. .|||.||..|+. .....||-|+..+
T Consensus 841 skCs~C~~~Ldl--P~VhF-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHF-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCcccc--ceeee-ecccHHHHHhhc---cCcccCCccchhh
Confidence 369999877632 22223 399999999988 4457899998743
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.41 E-value=0.28 Score=49.14 Aligned_cols=49 Identities=22% Similarity=0.542 Sum_probs=34.1
Q ss_pred CCCcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l~ 223 (379)
+++-|+.|++++.-.++ ..-.| ||-..|.-|... +++ +..||-||+...
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~-irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNN-IRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHH-HHhhccCCChHhhhhcc
Confidence 45669999999965553 33445 898777777555 332 568999998543
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.09 E-value=0.41 Score=48.62 Aligned_cols=29 Identities=28% Similarity=0.857 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHHHhc-------------CCCCCCcCcCCcC
Q 037216 196 CCHAFHARCIDTWLES-------------NLTCPLCRSPIIA 224 (379)
Q Consensus 196 C~H~FH~~Ci~~WL~~-------------~~~CP~CR~~l~~ 224 (379)
|.-.+|.+|+-+|+.. +-.||+||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 3446789999999853 2269999997643
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=0.19 Score=55.64 Aligned_cols=35 Identities=23% Similarity=0.575 Sum_probs=27.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL 209 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL 209 (379)
.++.|.+|...+... .-.+-| |||.||++||..-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 567899998887543 344667 99999999998755
No 97
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.86 E-value=0.31 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=22.7
Q ss_pred eecCCCCCcccHHHHHHHHhcCCCCCC
Q 037216 191 RLLPLCCHAFHARCIDTWLESNLTCPL 217 (379)
Q Consensus 191 ~~Lp~C~H~FH~~Ci~~WL~~~~~CP~ 217 (379)
.... |+|+.|.+|...|+.....||.
T Consensus 1044 ~Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhcc-ccccccHHHHHHHHhcCCcCCC
Confidence 3444 9999999999999999999985
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.75 E-value=0.38 Score=46.84 Aligned_cols=51 Identities=35% Similarity=0.803 Sum_probs=36.4
Q ss_pred CCCcCccccccccCCCc-eeecCCCC-----CcccHHHHHHHHh--cCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQ-LRLLPLCC-----HAFHARCIDTWLE--SNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~-----H~FH~~Ci~~WL~--~~~~CP~CR~~l~~ 224 (379)
.+..|-||.++...... .-+.| |. +..|..|++.|+. ....|.+|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 34789999997654322 34555 64 4589999999997 45689999885543
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.14 E-value=0.23 Score=57.06 Aligned_cols=47 Identities=30% Similarity=0.623 Sum_probs=37.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
....|.||++.+....- +. .|||.+|..|+..|+..+..||+|....
T Consensus 1152 ~~~~c~ic~dil~~~~~--I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGG--IA-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCC--ee-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 34589999999853222 22 3999999999999999999999998533
No 100
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.74 E-value=0.83 Score=39.52 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.3
Q ss_pred HHHHhh
Q 037216 117 RHLNRR 122 (379)
Q Consensus 117 r~~~rr 122 (379)
...++|
T Consensus 23 ~rRR~r 28 (130)
T PF12273_consen 23 NRRRRR 28 (130)
T ss_pred HHHHhh
Confidence 333334
No 101
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=0.77 Score=46.88 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC---CCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN---LTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~ 220 (379)
+-..|||=.+.-.+......|. |||+..++-+++..+.. .+||.|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4678999988887777888898 99999999999955443 36999944
No 102
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.09 E-value=0.5 Score=50.49 Aligned_cols=47 Identities=34% Similarity=0.845 Sum_probs=39.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCcc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET 227 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~~ 227 (379)
..++|.||+.+. ..+..+ |. |..|+.+|+..+..||+|+..+..++.
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 567999999987 556666 88 999999999999999999998876643
No 103
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=82.39 E-value=1.5 Score=39.51 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=21.8
Q ss_pred CCcCccccccccCCCc---------eeecCCCCCc-ccHHHHHHHH
Q 037216 174 GGDCAICLFKFEPHDQ---------LRLLPLCCHA-FHARCIDTWL 209 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~---------~~~Lp~C~H~-FH~~Ci~~WL 209 (379)
+..|+|||+--.+..- +|-.- |+-- =|..|+|++-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHH
Confidence 4689999987643221 11111 5543 6899999965
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.04 E-value=1 Score=44.79 Aligned_cols=46 Identities=26% Similarity=0.499 Sum_probs=33.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.-.+|+||.+.+... +..-+ =||..|..|-.+ ..+.||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc--ceecC-CCcEehhhhhhh---hcccCCcccccccc
Confidence 456999999988432 22222 479999999653 46799999999873
No 105
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.49 E-value=2.6 Score=36.58 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q 037216 114 LLLRHLNRR 122 (379)
Q Consensus 114 ~l~r~~~rr 122 (379)
+|.++++|+
T Consensus 83 li~y~irR~ 91 (122)
T PF01102_consen 83 LISYCIRRL 91 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=79.91 E-value=0.66 Score=49.84 Aligned_cols=43 Identities=30% Similarity=0.768 Sum_probs=27.1
Q ss_pred CCCcCccccc-----cccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcC
Q 037216 173 SGGDCAICLF-----KFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCR 219 (379)
Q Consensus 173 ~~~~C~ICl~-----~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR 219 (379)
....|.+|-. +|......+... |+++||..|+.. ....||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCchH
Confidence 4678888832 233222334444 999999999544 344599993
No 107
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=1.6 Score=42.86 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=32.1
Q ss_pred cCcccccccc-CCC-ceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCC
Q 037216 176 DCAICLFKFE-PHD-QLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222 (379)
Q Consensus 176 ~C~ICl~~~~-~~~-~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l 222 (379)
.|++|-...- ..+ .+.+-+ |+|..|..|+|.-+.. ...||.|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 5899976532 223 333345 9999999999997654 45899995543
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=78.76 E-value=1.8 Score=48.02 Aligned_cols=49 Identities=27% Similarity=0.636 Sum_probs=36.8
Q ss_pred CCCcCccccccccCCCceeecCCCCC-----cccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCH-----AFHARCIDTWLES--NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H-----~FH~~Ci~~WL~~--~~~CP~CR~~l~ 223 (379)
++..|.||..+=.+++.+ .-| |.. ..|.+|+.+|+.- ...|-+|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 457899999887666655 344 542 4899999999974 457999988664
No 109
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.05 E-value=4.4 Score=35.11 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037216 91 LKPSLIIIILILAITVFLSISLCLLLRHLNRRCLR 125 (379)
Q Consensus 91 ~~~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~~r 125 (379)
.....+||+.+++.++++++++.+++|+++|+...
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34567788888888888888888888888888543
No 110
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.55 E-value=1.8 Score=38.03 Aligned_cols=53 Identities=17% Similarity=0.375 Sum_probs=36.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~CR~~l~~~ 225 (379)
.-.+|.||.|.-.+..-+.--..||-..|..|--..++ .+..||+|+...-..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45799999988654332322222898888888776554 367899999877543
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.72 E-value=1.6 Score=48.13 Aligned_cols=51 Identities=8% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCCcCccccccccC---CCceeecCCCCCcccHHHHHHHHhc------CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEP---HDQLRLLPLCCHAFHARCIDTWLES------NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~---~~~~~~Lp~C~H~FH~~Ci~~WL~~------~~~CP~CR~~l~ 223 (379)
....|.||.-++.. +-.+..+..|+|.||..||..|+.+ +-.|+.|.+.|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34567777666665 2222233349999999999999964 235788877664
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=1.3 Score=45.52 Aligned_cols=38 Identities=26% Similarity=0.654 Sum_probs=27.9
Q ss_pred CCCcCccccccccCC-CceeecCCCCCcccHHHHHHHHhc
Q 037216 173 SGGDCAICLFKFEPH-DQLRLLPLCCHAFHARCIDTWLES 211 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~-~~~~~Lp~C~H~FH~~Ci~~WL~~ 211 (379)
...+|.||..+.... +.-..+ +|+|.||.+|+...+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 457899999555444 333444 59999999999988864
No 113
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=75.03 E-value=17 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=7.3
Q ss_pred CchhHHHHHHHHHHHH
Q 037216 92 KPSLIIIILILAITVF 107 (379)
Q Consensus 92 ~~~i~iiiiIL~~~l~ 107 (379)
+..|++.+||+++.|+
T Consensus 127 K~amLIClIIIAVLfL 142 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFL 142 (227)
T ss_pred chhHHHHHHHHHHHHH
Confidence 3445554444444433
No 114
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=73.69 E-value=7.6 Score=26.89 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLN 120 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~ 120 (379)
+-+|..++++++++++..+....+++
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444333333333333333
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=73.60 E-value=1.2 Score=32.35 Aligned_cols=44 Identities=27% Similarity=0.710 Sum_probs=24.7
Q ss_pred cCccccccccCCCceeecCCCC-CcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCC-HAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~-H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.|.-|.-+. +.++ +|. |..|..|+...|.....||+|..+++.+
T Consensus 4 nCKsCWf~~---k~Li---~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN---KGLI---KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S-----SSEE---E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC---CCee---eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 566676443 3232 265 8999999999998889999999988653
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.40 E-value=2.7 Score=46.23 Aligned_cols=42 Identities=17% Similarity=0.445 Sum_probs=30.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPL 217 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~ 217 (379)
...|.+|-..+. | .....+.|||.-|.+|+..|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~-G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIR-G-VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceee-e-eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 346888865542 1 22233459999999999999998888876
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=1.7 Score=42.16 Aligned_cols=49 Identities=24% Similarity=0.680 Sum_probs=33.4
Q ss_pred CCCcCccccccccCCCc-eeecCCCC-----CcccHHHHHHHHhcC--------CCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQ-LRLLPLCC-----HAFHARCIDTWLESN--------LTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~-----H~FH~~Ci~~WL~~~--------~~CP~CR~~l 222 (379)
.+..|-||+..=+++.. ..+-| |. |-.|..|+..|+..+ -.||-|+...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 45689999765433322 23455 54 679999999999542 2599998744
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=72.72 E-value=2.7 Score=39.30 Aligned_cols=42 Identities=33% Similarity=0.707 Sum_probs=29.9
Q ss_pred CCCcCcccccc-----ccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 173 SGGDCAICLFK-----FEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~-----~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
.+..|.+|-++ |+. +.+..-+.|+-+||..|... ..||-|-.
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 46789999753 333 24555566999999999652 67999943
No 119
>PF15050 SCIMP: SCIMP protein
Probab=72.36 E-value=6.4 Score=34.04 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLNRRCLR 125 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~rr~~r 125 (379)
+|+|+++. ++++++++-+|++|..|+..|
T Consensus 8 FWiiLAVa--II~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 8 FWIILAVA--IILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 333444444555555444443
No 120
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=69.01 E-value=2 Score=41.28 Aligned_cols=46 Identities=24% Similarity=0.612 Sum_probs=33.9
Q ss_pred CCCcCcccccccc-CCC-ceeecCCCCCcccHHHHHHHHhc-CCCCC--Cc
Q 037216 173 SGGDCAICLFKFE-PHD-QLRLLPLCCHAFHARCIDTWLES-NLTCP--LC 218 (379)
Q Consensus 173 ~~~~C~ICl~~~~-~~~-~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP--~C 218 (379)
.+..|+||-.+-- ..+ ++-+-|.|-|..|..|+|.-+.. ...|| -|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC 59 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGC 59 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccH
Confidence 3558999987743 223 44455669999999999998765 45899 78
No 121
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.74 E-value=2.8 Score=41.36 Aligned_cols=29 Identities=21% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCCCcCcCCcC
Q 037216 196 CCHAFHARCIDTWLE-------------SNLTCPLCRSPIIA 224 (379)
Q Consensus 196 C~H~FH~~Ci~~WL~-------------~~~~CP~CR~~l~~ 224 (379)
|.-.+|.+|+-.|+. ++-+||+||+...-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 566789999999983 33479999997654
No 122
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.56 E-value=1.9 Score=47.63 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=32.9
Q ss_pred CCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 174 GGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 174 ~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
+..|.-|.+..... ..+.++. |||+||+.|+..-..+++ |-.|-.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhhc
Confidence 45799998886532 3456676 999999999988766544 777744
No 123
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.73 E-value=1.5 Score=47.97 Aligned_cols=46 Identities=37% Similarity=0.706 Sum_probs=35.1
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC---CCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN---LTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~~l~ 223 (379)
..+|+||+..+... ..+ +|.|.|+.-|+..-+... ..||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 56999999998644 344 499999999988766543 47999987553
No 124
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=65.15 E-value=7.7 Score=38.61 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 96 IIIILILAITVFLSISLCLLLRHLN 120 (379)
Q Consensus 96 ~iiiiIL~~~l~v~i~l~~l~r~~~ 120 (379)
...++++++++++.+++.+++||.+
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444555555555544
No 125
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=61.60 E-value=20 Score=29.33 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhcccCC
Q 037216 107 FLSISLCLLLRHLNRRCLRHLS 128 (379)
Q Consensus 107 ~v~i~l~~l~r~~~rr~~r~~~ 128 (379)
|+.++++++.+|..|++.|+.-
T Consensus 44 Fil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 44 FILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred HHHHHHHHHHHHHHhhhccCCc
Confidence 3444555666666666655443
No 126
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.43 E-value=5 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=13.5
Q ss_pred cCccccccccCCCceeecCCCCCcc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAF 200 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~F 200 (379)
.|+-|-.++. ...+.-|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4777766653 2344455577766
No 127
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.96 E-value=8.2 Score=37.49 Aligned_cols=52 Identities=13% Similarity=0.348 Sum_probs=37.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATE 226 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~ 226 (379)
....|+|---+|.....-..|-.|||+|-..-+.+ +. ..+|++|-+...+++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKe-ik-as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKE-IK-ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHH-hh-hccccccCCcccccC
Confidence 45679999888865444434444999999988777 32 579999988765443
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.94 E-value=5 Score=37.98 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=33.7
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
-..|.+|.+-.-.+ ++.-. ||-.+|..|+...++....||.|-.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchhc
Confidence 35799998876433 33233 7777999999999999999999943
No 129
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.00 E-value=12 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.553 Sum_probs=35.4
Q ss_pred CCCcCcccccccc---------------CCC-ceeecCCCCCcccHHHHHHHHhc---------CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFE---------------PHD-QLRLLPLCCHAFHARCIDTWLES---------NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~---------------~~~-~~~~Lp~C~H~FH~~Ci~~WL~~---------~~~CP~CR~~l~~~ 225 (379)
.+.+|++|+..=. .|. .-..-| |||+.-++=..-|-+. +..||.|-+.|...
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 3568999986511 111 123556 9999999888889864 34699998876543
No 130
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=56.46 E-value=5.7 Score=41.29 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=28.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE 210 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~ 210 (379)
++-.|+||..-| ++.++|| |+|..|..|...-+.
T Consensus 3 eelkc~vc~~f~---~epiil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFY---REPIILP-CSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhc---cCceEee-cccHHHHHHHHhhcc
Confidence 355799999888 6778999 999999999887554
No 131
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.92 E-value=6.9 Score=40.78 Aligned_cols=36 Identities=25% Similarity=0.632 Sum_probs=29.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES 211 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~ 211 (379)
....|-||.+.+.. .+..+. |||.|+..|+...+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 56799999999854 565666 9999999999998854
No 132
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=55.04 E-value=17 Score=30.70 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037216 97 IIILILAITVFLSISLCLLLRHLNRRC 123 (379)
Q Consensus 97 iiiiIL~~~l~v~i~l~~l~r~~~rr~ 123 (379)
.+++|+++++++++++.++.+...+++
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566656666666666555555444
No 133
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.87 E-value=9.8 Score=38.09 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=34.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCR 219 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR 219 (379)
+-..|++--+.-.+......|. |||+.-.+-++. |.++ ..||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~-LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSV-LSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHH-HhhcCcEEeeCCCCC
Confidence 3457999777766667777887 999999999999 5443 3699994
No 134
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=53.23 E-value=8.7 Score=28.28 Aligned_cols=42 Identities=26% Similarity=0.568 Sum_probs=22.1
Q ss_pred CccccccccCCC------ceeecCCCCCcccHHHHHHHHhc-CCCCCCcC
Q 037216 177 CAICLFKFEPHD------QLRLLPLCCHAFHARCIDTWLES-NLTCPLCR 219 (379)
Q Consensus 177 C~ICl~~~~~~~------~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR 219 (379)
|--|+.+|.... ..-.-|.|++.|+.+| |.++.. -.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777776542 3445667999999999 554432 35899884
No 135
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=52.32 E-value=20 Score=40.01 Aligned_cols=30 Identities=33% Similarity=0.741 Sum_probs=17.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhhcc
Q 037216 96 IIIILILA-ITVFLSISLCLLLRHLNRRCLR 125 (379)
Q Consensus 96 ~iiiiIL~-~~l~v~i~l~~l~r~~~rr~~r 125 (379)
++++.||+ ++++++++||++++|++|+|.+
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 44455555 4455566667777766666644
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.27 E-value=18 Score=30.87 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCcCccccccccCCC----------ceeecCCCCCcccHHHHHHHHhcCCCCCCcC
Q 037216 174 GGDCAICLFKFEPHD----------QLRLLPLCCHAFHARCIDTWLESNLTCPLCR 219 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~----------~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR 219 (379)
...|--|+..|.... ..-.-++|++.|+.+|=.-+-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 457999999886431 1223456999999999555545567899995
No 137
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=52.14 E-value=13 Score=24.08 Aligned_cols=37 Identities=24% Similarity=0.572 Sum_probs=24.8
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
|..|-+.+...+.. +.. =+..||.+| ..|..|..+|.
T Consensus 2 C~~C~~~i~~~~~~-~~~-~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELV-LRA-LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEE-EEe-CCccccccC--------CCCcccCCcCc
Confidence 78888887655222 222 578899988 46777877653
No 138
>PF14979 TMEM52: Transmembrane 52
Probab=51.87 E-value=22 Score=31.77 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRHLNRRC 123 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~ 123 (379)
+.+|+++++++.++++-+....+.+|++||+
T Consensus 20 WyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666666666666555555554555554
No 139
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.86 E-value=1e+02 Score=28.11 Aligned_cols=13 Identities=0% Similarity=0.041 Sum_probs=8.6
Q ss_pred cchhheehhhHHH
Q 037216 22 QCMMIYYLSPMII 34 (379)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (379)
.|++...+++|..
T Consensus 5 ~~~~~~~~~~llL 17 (163)
T PF06679_consen 5 SALPHLLAPWLLL 17 (163)
T ss_pred ccccchhHHHHHH
Confidence 5777776666654
No 140
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=50.75 E-value=7.7 Score=37.92 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=36.6
Q ss_pred CCcCccccccccCCCceee---cCCCCCcccHHHHHHHHhc---------CCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRL---LPLCCHAFHARCIDTWLES---------NLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~---Lp~C~H~FH~~Ci~~WL~~---------~~~CP~CR~~l~~~ 225 (379)
..+|.+|.+++.+.+..+. -|.|+-++|..|+-.-+.. ...||.|+..+.+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w~ 245 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSWT 245 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeHH
Confidence 3589999999954443332 2338889999999984432 23699999976654
No 141
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=49.64 E-value=20 Score=25.92 Aligned_cols=42 Identities=29% Similarity=0.675 Sum_probs=17.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-----CCCCCcCcC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-----LTCPLCRSP 221 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-----~~CP~CR~~ 221 (379)
.|+|....+. --+|-.. |.|.-+.+ ++.||..+ -.||+|.++
T Consensus 4 ~CPls~~~i~--~P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIR--IPVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-S--SEEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEE--eCccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5888877763 2344444 88873221 23455432 269999764
No 142
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=48.98 E-value=25 Score=26.43 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=33.5
Q ss_pred CcCccccccccCCCceeecCCCCC--cccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCH--AFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H--~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
..|-.|-.++..+.....+ |.+ -||.+|.+.-| +..||.|-..+..
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4788888888766522222 665 59999999977 6799999776654
No 143
>PF15102 TMEM154: TMEM154 protein family
Probab=46.46 E-value=7 Score=34.90 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=6.3
Q ss_pred HHHHHHHHhc
Q 037216 202 ARCIDTWLES 211 (379)
Q Consensus 202 ~~Ci~~WL~~ 211 (379)
-+=+|+|+..
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 4557777754
No 144
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=45.34 E-value=18 Score=36.40 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=42.6
Q ss_pred CCHHHHhhCCceeecccccCC-CCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCcCc
Q 037216 151 PAFSVMDSLPLFAFSSVSRRS-SSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRS 220 (379)
Q Consensus 151 l~~~~i~slP~~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~ 220 (379)
+.++.---+|...+.+..... .....|-.|.++.......+.- .|.|+||.+| |..+. +-..||-|.+
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldC-Dv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCE-SCKNVFCLDC-DVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEch-hccceeeccc-hHHHHhhhhcCCCcCC
Confidence 334444456666666654432 2455699997776554444444 4999999999 34343 3468999974
No 145
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.31 E-value=12 Score=36.22 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=28.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES 211 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~ 211 (379)
.-+.|..||.++ ....+.| =||+|+++||-..+..
T Consensus 42 ~FdcCsLtLqPc---~dPvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPC---RDPVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred Ccceeeeecccc---cCCccCC-CCeeeeHHHHHHHHHH
Confidence 345799999998 4555677 8999999999998743
No 146
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=43.43 E-value=25 Score=35.74 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 037216 105 TVFLSISLCLLLRHLN 120 (379)
Q Consensus 105 ~l~v~i~l~~l~r~~~ 120 (379)
++++.+++.+++||.+
T Consensus 322 IVLIMvIIYLILRYRR 337 (353)
T TIGR01477 322 IVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3334445555555543
No 148
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=43.10 E-value=31 Score=24.35 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 96 IIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 96 ~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
++++++++++...++.+++..++..|+
T Consensus 11 IlVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 11 ILVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443333333444434444333
No 149
>PTZ00046 rifin; Provisional
Probab=41.19 E-value=28 Score=35.57 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 037216 105 TVFLSISLCLLLRHL 119 (379)
Q Consensus 105 ~l~v~i~l~~l~r~~ 119 (379)
++++.+++.+++||+
T Consensus 327 IVLIMvIIYLILRYR 341 (358)
T PTZ00046 327 IVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333444445555553
No 150
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.83 E-value=15 Score=37.73 Aligned_cols=44 Identities=27% Similarity=0.540 Sum_probs=31.3
Q ss_pred CCcCccccccccCCC--ceeecCCCCCcccHHHHHHHHhcCCCCCCc
Q 037216 174 GGDCAICLFKFEPHD--QLRLLPLCCHAFHARCIDTWLESNLTCPLC 218 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~--~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~C 218 (379)
--+|++|.--+.... ....-. |||.||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 457888876654333 223444 99999999999998877777555
No 151
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=39.75 E-value=42 Score=30.10 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 037216 98 IILILAITVFLS 109 (379)
Q Consensus 98 iiiIL~~~l~v~ 109 (379)
++++++++++++
T Consensus 32 ~tILiaIvVlii 43 (189)
T PF05568_consen 32 YTILIAIVVLII 43 (189)
T ss_pred HHHHHHHHHHHH
Confidence 333334343333
No 152
>PRK01844 hypothetical protein; Provisional
Probab=39.31 E-value=66 Score=25.43 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
++++++|+++++.+++.+++-.+++.+.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544444444444444444443
No 153
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=39.16 E-value=14 Score=36.44 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 90 NLKPSLIIIILILAITVFLSISLCLLLRHLN 120 (379)
Q Consensus 90 ~~~~~i~iiiiIL~~~l~v~i~l~~l~r~~~ 120 (379)
+.+-.++-+|+++++++|++++.+++++++.
T Consensus 272 S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~ 302 (305)
T PF04639_consen 272 SVSDSLLPIILIIGGVLLIVFIGYFIFKRLM 302 (305)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhheeeEeec
Confidence 3445666677777777666666666655544
No 154
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=38.78 E-value=14 Score=26.03 Aligned_cols=42 Identities=21% Similarity=0.564 Sum_probs=26.9
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHh------cCCCCCCcC
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE------SNLTCPLCR 219 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~------~~~~CP~CR 219 (379)
|.||...-.. ..+..-..|+..||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 8899884333 34434445888999999876432 123677775
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=37.74 E-value=28 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=24.3
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHH
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL 209 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL 209 (379)
..|.+|-..|.....-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57999988886544222333499999999977644
No 156
>PHA03240 envelope glycoprotein M; Provisional
Probab=37.70 E-value=39 Score=32.21 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=18.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037216 91 LKPSLIIIILILAITVFLSISLCLLLRHLNRRCL 124 (379)
Q Consensus 91 ~~~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~~ 124 (379)
-....|+|++|+++++++++.+-+--+.+.+...
T Consensus 210 aaH~~WIiilIIiIiIIIL~cfKiPQKl~dKw~~ 243 (258)
T PHA03240 210 AAHIAWIFIAIIIIIVIILFFFKIPQKLFDKWDL 243 (258)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 3355666666666555554444444455555543
No 157
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=37.64 E-value=18 Score=25.90 Aligned_cols=39 Identities=21% Similarity=0.519 Sum_probs=25.7
Q ss_pred CccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 177 CAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 177 C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
|.-|-..+..++.+ +.. -+..||.+| .+|-.|..+|...
T Consensus 1 C~~C~~~I~~~~~~-~~~-~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKA-MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEE-TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEe-CCcEEEccc--------cccCCCCCccCCC
Confidence 66777777644433 222 678888877 4688888877654
No 158
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.00 E-value=11 Score=38.72 Aligned_cols=50 Identities=20% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCcCcccccccc-------------CCC---ceeecCCCCCcccHHHHHHHHhc---------CCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFE-------------PHD---QLRLLPLCCHAFHARCIDTWLES---------NLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~-------------~~~---~~~~Lp~C~H~FH~~Ci~~WL~~---------~~~CP~CR~~l~~ 224 (379)
..+|++|+..=. .+. ....-| |||+.-.+...-|-+. +..||-|-.+|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999986511 111 234567 9999999999999754 2469999887764
No 159
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=36.79 E-value=21 Score=38.94 Aligned_cols=18 Identities=33% Similarity=0.253 Sum_probs=11.9
Q ss_pred hcCCCchHHHHHHhhhcc
Q 037216 315 AAGRSWLKDYVDRLSFSV 332 (379)
Q Consensus 315 a~s~~~l~~yv~~~~~~~ 332 (379)
..+..-+-|.|||++..+
T Consensus 439 ~~s~~~ifehvdr~sr~~ 456 (684)
T PF12877_consen 439 QLSSASIFEHVDRLSRSS 456 (684)
T ss_pred cccchhhhhhhhhhhccc
Confidence 344555778888887654
No 160
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=36.67 E-value=31 Score=34.72 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=34.7
Q ss_pred CCcCccccccccCCCceeecC-CCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLP-LCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp-~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|+||.++....+.. .+| .|+|..|..|...-...+..||.||.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccc
Confidence 36899999987544433 333 17888788887776667889999995543
No 161
>PRK00523 hypothetical protein; Provisional
Probab=36.63 E-value=72 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
++++++|+++++.+++.+++-.+++.+.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 162
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=35.57 E-value=15 Score=27.67 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=17.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW 208 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W 208 (379)
....|.+|...|..-..-..-..||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 346899999999654433333349999999987553
No 163
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=35.51 E-value=60 Score=27.26 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRHLNRRC 123 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~ 123 (379)
.+|-+++.|++.++.+++++.+.++|-..++
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k 45 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYK 45 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4466666666666666666666665544443
No 164
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.23 E-value=23 Score=27.51 Aligned_cols=12 Identities=25% Similarity=0.982 Sum_probs=8.9
Q ss_pred cccHHHHHHHHh
Q 037216 199 AFHARCIDTWLE 210 (379)
Q Consensus 199 ~FH~~Ci~~WL~ 210 (379)
.||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 165
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=33.76 E-value=28 Score=34.30 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 037216 102 LAITVFLSISLCLLLRHLNRRCL 124 (379)
Q Consensus 102 L~~~l~v~i~l~~l~r~~~rr~~ 124 (379)
++++|.+++++.++.+++.|||.
T Consensus 277 VG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHHHHHHhheeEeccc
Confidence 44444444444444554444443
No 166
>PLN02189 cellulose synthase
Probab=33.39 E-value=36 Score=39.31 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=33.1
Q ss_pred CCCcCccccccccC---CCceeecCCCCCcccHHHHHHHHh--cCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEP---HDQLRLLPLCCHAFHARCIDTWLE--SNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~---~~~~~~Lp~C~H~FH~~Ci~~WL~--~~~~CP~CR~~l~ 223 (379)
....|.||-+++.. |+.-+-...|+--.|+.|.+- -+ .++.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 45699999999753 222222223777799999843 32 2678999987553
No 167
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.90 E-value=15 Score=37.79 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=0.0
Q ss_pred CCCcCccccccccC----------CCc-eeecCCCCCcccHHHHHHHHhc------CCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEP----------HDQ-LRLLPLCCHAFHARCIDTWLES------NLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~----------~~~-~~~Lp~C~H~FH~~Ci~~WL~~------~~~CP~CR~~ 221 (379)
.-.+|++=|..+.- .++ -..|. |||++... .|-.. ..+||+||..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeecc-ccceeeec---ccccccccccccccCCCcccc
Confidence 45678888766531 112 23444 99984432 36532 4579999974
No 168
>PF15050 SCIMP: SCIMP protein
Probab=31.69 E-value=77 Score=27.55 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=21.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 037216 92 KPSLIIIILILAITVFLSISLCLLLRHLNRRCLRH 126 (379)
Q Consensus 92 ~~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~~r~ 126 (379)
...++.+.+|+..+++.+|++|+ .|+..|+-+.+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCv-cR~~lRqGkkw 41 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCV-CRWQLRQGKKW 41 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccccc
Confidence 46677777888777666665555 44455554444
No 169
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=31.67 E-value=38 Score=28.12 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRHLNRRC 123 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~ 123 (379)
..+|..++.-+.+++++|++.++..|+.|++
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3466666666655555555555555555443
No 170
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.39 E-value=1.1e+02 Score=21.18 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037216 98 IILILAITVFLSISLCLLLRHLNRRCL 124 (379)
Q Consensus 98 iiiIL~~~l~v~i~l~~l~r~~~rr~~ 124 (379)
+-+|.++++.++++.+.+..|..++++
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444444443
No 171
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.70 E-value=28 Score=34.46 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=32.9
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-----------CCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-----------TCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-----------~CP~CR~~l~~ 224 (379)
...|.+|.|.+++..-+..-.-=.|.||.-|-+.-++.+. +||+--..+.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vPW 329 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVPW 329 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcccH
Confidence 3579999999864433321111259999999999887643 46666555444
No 172
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=30.03 E-value=66 Score=26.13 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=10.1
Q ss_pred CCCCchhHHHHHHHHHH
Q 037216 89 ENLKPSLIIIILILAIT 105 (379)
Q Consensus 89 ~~~~~~i~iiiiIL~~~ 105 (379)
..+.+++++.|+|.+++
T Consensus 20 ~~l~pn~lMtILivLVI 36 (85)
T PF10717_consen 20 NGLNPNTLMTILIVLVI 36 (85)
T ss_pred cccChhHHHHHHHHHHH
Confidence 34667777666655433
No 173
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=29.59 E-value=25 Score=35.31 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=27.3
Q ss_pred CCCcCccccccccCCC-----------ceeecCCCCCc--ccHHHHHHHHhc------CCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHD-----------QLRLLPLCCHA--FHARCIDTWLES------NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~-----------~~~~Lp~C~H~--FH~~Ci~~WL~~------~~~CP~CR~ 220 (379)
.-.+|++=|..+.-.. .-..|. |||+ +|. |=.+ ...||+||.
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~-CGHV~G~H~-----WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLN-CGHVHGYHN-----WGVRENTGQRERECPMCRV 349 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEe-ccccccccc-----cccccccCcccCcCCeeee
Confidence 3457999887764222 234666 9997 665 6432 346999986
No 175
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.96 E-value=29 Score=23.49 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=14.0
Q ss_pred cCccccccccCCCc-------eeecCCCCCccc
Q 037216 176 DCAICLFKFEPHDQ-------LRLLPLCCHAFH 201 (379)
Q Consensus 176 ~C~ICl~~~~~~~~-------~~~Lp~C~H~FH 201 (379)
.|+-|-..|...+. ...-+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777776653332 122334777764
No 176
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.85 E-value=26 Score=28.93 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=18.0
Q ss_pred CCCcccHHHHHHHHhcCCCCCCcCcCCcCCc
Q 037216 196 CCHAFHARCIDTWLESNLTCPLCRSPIIATE 226 (379)
Q Consensus 196 C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~ 226 (379)
||..|-.+= ++..+.||.|+..+++..
T Consensus 64 CGfef~~~~----ik~pSRCP~CKSE~Ie~p 90 (97)
T COG3357 64 CGFEFRDDK----IKKPSRCPKCKSEWIEEP 90 (97)
T ss_pred cCccccccc----cCCcccCCcchhhcccCC
Confidence 666665521 333578999999887754
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=27.69 E-value=41 Score=37.52 Aligned_cols=46 Identities=33% Similarity=0.541 Sum_probs=29.0
Q ss_pred CCCcCccccccccC----C-----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEP----H-----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~----~-----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
.+..|+-|-..|.. | ....+.|-|.|..|..=|.. .+.||+|...+
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 34567666655531 1 12445666999888765443 67999998754
No 178
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=27.58 E-value=1.2e+02 Score=25.00 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=9.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037216 91 LKPSLIIIILILAITVFLSISLCLLLR 117 (379)
Q Consensus 91 ~~~~i~iiiiIL~~~l~v~i~l~~l~r 117 (379)
++....+.|+++..+.++-++..+++|
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 179
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=27.57 E-value=61 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
++|.|++++.++++++++..+.++++||
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 3333333333344433333333444444
No 180
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.27 E-value=87 Score=31.24 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037216 97 IIILILAITVFLSISLCLLLRHLNRRCL 124 (379)
Q Consensus 97 iiiiIL~~~l~v~i~l~~l~r~~~rr~~ 124 (379)
..|+..++++++++++.+|+++.+|.||
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555566666554
No 181
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.85 E-value=1.4e+02 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037216 97 IIILILAITVFLSISLCLLLRHL 119 (379)
Q Consensus 97 iiiiIL~~~l~v~i~l~~l~r~~ 119 (379)
++++++++++.+++.+++-.++.
T Consensus 7 il~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 182
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.41 E-value=22 Score=25.90 Aligned_cols=13 Identities=38% Similarity=1.020 Sum_probs=7.2
Q ss_pred CCCCcCcCCcCCc
Q 037216 214 TCPLCRSPIIATE 226 (379)
Q Consensus 214 ~CP~CR~~l~~~~ 226 (379)
.||+|.+++...+
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 8999999987654
No 183
>PF15179 Myc_target_1: Myc target protein 1
Probab=26.03 E-value=1e+02 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRHLNRRC 123 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~ 123 (379)
..++.+.+-+++.+++..++++++.|+.||+
T Consensus 20 ~lIlaF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 20 DLILAFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555566666667777665
No 184
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.97 E-value=1.3e+02 Score=23.85 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 037216 109 SISLCLLLRHLN 120 (379)
Q Consensus 109 ~i~l~~l~r~~~ 120 (379)
++....++.++.
T Consensus 16 fVap~wl~lHY~ 27 (75)
T TIGR02976 16 FVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 185
>PRK11827 hypothetical protein; Provisional
Probab=25.74 E-value=25 Score=26.79 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=16.0
Q ss_pred HHHHhcCCCCCCcCcCCcCC
Q 037216 206 DTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 206 ~~WL~~~~~CP~CR~~l~~~ 225 (379)
+.||...-.||.|+.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 46777777899999998764
No 186
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=25.55 E-value=96 Score=24.93 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=20.0
Q ss_pred CCCcCccccccccCCC--ce-eecCCCCCcccHHHHHHHHhc-CCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHD--QL-RLLPLCCHAFHARCIDTWLES-NLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~--~~-~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l 222 (379)
....|-||-+++.... .+ .....|+.-.|+.|.+-=.+. ++.||.|+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 5679999999875333 12 111226667899998764433 67899998754
No 187
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=25.40 E-value=46 Score=24.21 Aligned_cols=25 Identities=32% Similarity=0.724 Sum_probs=14.9
Q ss_pred cCCCCCcccHHHHHHHHhcCCCCCCc
Q 037216 193 LPLCCHAFHARCIDTWLESNLTCPLC 218 (379)
Q Consensus 193 Lp~C~H~FH~~Ci~~WL~~~~~CP~C 218 (379)
-+.|||.|-..=-+. ......||.|
T Consensus 31 C~~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEccHhhh-ccCCCCCCCC
Confidence 344777665543333 3456789988
No 188
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=24.99 E-value=92 Score=28.92 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=15.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037216 90 NLKPSLIIIILILAITVFLSISLCLLLRHLNRRCL 124 (379)
Q Consensus 90 ~~~~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~~ 124 (379)
+++...+++++++++. ++++++++..|-..|...
T Consensus 7 ~lsGv~vvlv~a~g~l-~~vllfIfaKRQI~Rf~l 40 (186)
T PF07406_consen 7 WLSGVNVVLVIAYGSL-VFVLLFIFAKRQIMRFAL 40 (186)
T ss_pred cccceeeehhhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444444444433 334444454555444443
No 189
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.43 E-value=1.6e+02 Score=25.32 Aligned_cols=19 Identities=21% Similarity=0.502 Sum_probs=14.0
Q ss_pred HhcCCCCCCcCcCCcCCcc
Q 037216 209 LESNLTCPLCRSPIIATET 227 (379)
Q Consensus 209 L~~~~~CP~CR~~l~~~~~ 227 (379)
|.+...|+.|++++.-+..
T Consensus 82 LGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred hchhhccCcCCCcCccCch
Confidence 4445689999999876643
No 190
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.36 E-value=37 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.735 Sum_probs=11.7
Q ss_pred CCCcccHHHHHHHHhcCCCCCCcCc
Q 037216 196 CCHAFHARCIDTWLESNLTCPLCRS 220 (379)
Q Consensus 196 C~H~FH~~Ci~~WL~~~~~CP~CR~ 220 (379)
|||++-..- ....||+|.+
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 666644322 3458999965
No 191
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.12 E-value=1.2e+02 Score=24.08 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=33.4
Q ss_pred CcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCcc
Q 037216 175 GDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATET 227 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~~ 227 (379)
..|--|-.++.++.. .++.. =.|.||.+|...-| +..||.|-..+.....
T Consensus 6 PnCECCDrDLpp~s~dA~ICt-fEcTFCadCae~~l--~g~CPnCGGelv~RP~ 56 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICT-FECTFCADCAENRL--HGLCPNCGGELVARPI 56 (84)
T ss_pred CCCcccCCCCCCCCCceeEEE-EeeehhHhHHHHhh--cCcCCCCCchhhcCcC
Confidence 356677666655442 22222 34789999999856 6799999877766543
No 192
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=23.84 E-value=2e+02 Score=21.83 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.8
Q ss_pred HHHHHHHHHhh
Q 037216 112 LCLLLRHLNRR 122 (379)
Q Consensus 112 l~~l~r~~~rr 122 (379)
+..++|.....
T Consensus 23 Ftl~IRri~~~ 33 (58)
T PF13314_consen 23 FTLFIRRILIN 33 (58)
T ss_pred HHHHHHHHHHh
Confidence 33345544443
No 193
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=23.82 E-value=1.3e+02 Score=27.05 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 94 SLIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 94 ~i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
.+++.+.+.+++.++++++|++-.|..|+
T Consensus 120 klilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 120 KLILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444555555555444443
No 194
>PLN02436 cellulose synthase A
Probab=23.67 E-value=67 Score=37.32 Aligned_cols=50 Identities=24% Similarity=0.503 Sum_probs=32.4
Q ss_pred CCCcCccccccccC---CCceeecCCCCCcccHHHHHHHHh--cCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEP---HDQLRLLPLCCHAFHARCIDTWLE--SNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~---~~~~~~Lp~C~H~FH~~Ci~~WL~--~~~~CP~CR~~l~ 223 (379)
....|-||-+++.. |+.-+-...|+--.|+.|.+- -+ .++.||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 45699999999743 332222222666699999843 32 2678999987553
No 195
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.45 E-value=1.6e+02 Score=29.07 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 94 SLIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 94 ~i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
.++|-++|-+.++|+++++-+++.+++||
T Consensus 229 VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 229 VVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444545554444
No 196
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.39 E-value=6.4 Score=30.88 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=21.1
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
..|+.|-.++... -+|.+|..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHH
Confidence 4799997776321 356667777555 444568999988774
No 197
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=23.27 E-value=37 Score=37.94 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=39.1
Q ss_pred CCCCcccchhhhhhcccccccchhheehhhHHH---HhccccCCCCCCCCcccccccCCCCCCCCCCCCCC
Q 037216 2 TPFSRDRHVISILARSQSQHQCMMIYYLSPMII---HLSVYKRNSPAPDYSSLFHSFSPLSSSSSLTPPPY 69 (379)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~s~~~~~~PPp~ 69 (379)
.||..+|.|+.++|.+.-+ +..+--+|. ...-..|....++ .+.+.+|..-..++.=.-|..
T Consensus 649 SP~~~~rsvv~l~a~~~~~-----l~~~~~~L~~~~~~~~i~Gd~a~i~-~~~v~s~~~g~~y~vG~lP~~ 713 (756)
T PRK11114 649 SPFNSQRSVVALLADSPRG-----LALLNDALNDPGKRAQIFGDVAVIR-ENGVRSLRVGEVYYVGHLPWY 713 (756)
T ss_pred CCCCCCceEEEEEcCChHH-----HHHHHHHHhCccchhhccccEEEEe-CCceEEEecCCEEEeccCCHH
Confidence 4888899998888877643 233333333 3445677777777 677777766665555444433
No 198
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.24 E-value=1.2e+02 Score=26.43 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccCC
Q 037216 106 VFLSISLCLLLRHLNRRCLRHLS 128 (379)
Q Consensus 106 l~v~i~l~~l~r~~~rr~~r~~~ 128 (379)
+.++|.++++.|-....|.|...
T Consensus 45 vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 45 VVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred HHHHHHHHHHHHHhHhccccccc
Confidence 33444555556655544444443
No 199
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=23.02 E-value=1.4e+02 Score=33.04 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 037216 96 IIIILILA 103 (379)
Q Consensus 96 ~iiiiIL~ 103 (379)
++|+++++
T Consensus 392 ~~~~~f~~ 399 (807)
T KOG1094|consen 392 ILIIIFVA 399 (807)
T ss_pred ehHHHHHH
Confidence 33333333
No 200
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.61 E-value=74 Score=24.64 Aligned_cols=33 Identities=15% Similarity=0.429 Sum_probs=18.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037216 89 ENLKPSLIIIILILAITVFLSISLCLLLRHLNR 121 (379)
Q Consensus 89 ~~~~~~i~iiiiIL~~~l~v~i~l~~l~r~~~r 121 (379)
..++|-++++|+|...++++++..+.+..|+++
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 345676666666666555555555554445443
No 201
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.92 E-value=76 Score=30.25 Aligned_cols=11 Identities=36% Similarity=0.368 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 037216 95 LIIIILILAIT 105 (379)
Q Consensus 95 i~iiiiIL~~~ 105 (379)
+.|+++|++.+
T Consensus 37 ~~I~iaiVAG~ 47 (221)
T PF08374_consen 37 VKIMIAIVAGI 47 (221)
T ss_pred eeeeeeeecch
Confidence 33444444433
No 202
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.88 E-value=3e+02 Score=21.38 Aligned_cols=10 Identities=10% Similarity=0.086 Sum_probs=4.4
Q ss_pred CCCHHHHhhC
Q 037216 150 NPAFSVMDSL 159 (379)
Q Consensus 150 ~l~~~~i~sl 159 (379)
.+..+.+++|
T Consensus 53 ~lTpDQirAl 62 (70)
T PHA02902 53 SLTPDQIKAL 62 (70)
T ss_pred cCCHHHHHHH
Confidence 3444444443
No 203
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=21.68 E-value=60 Score=26.51 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=30.4
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIATE 226 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~~ 226 (379)
...|.-|-..+.--+.+ | |-.|+..+..|..|+++|....
T Consensus 33 rS~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~~y 72 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPPRY 72 (92)
T ss_pred CCcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCChHH
Confidence 45899998887544433 4 5669999999999999987643
No 204
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.32 E-value=1.2e+02 Score=30.09 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 037216 99 ILILAITVFLSISLCLLLRHLNRRCLRHLST 129 (379)
Q Consensus 99 iiIL~~~l~v~i~l~~l~r~~~rr~~r~~~~ 129 (379)
|++|.+++++++++++.++.++||.+-+...
T Consensus 263 iaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccc
No 205
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.75 E-value=37 Score=38.21 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=26.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL 209 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL 209 (379)
....|-.|.... .....+.+.|||.+|..|++.|.
T Consensus 228 ~~~mC~~C~~tl--fn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTL--FNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccc--cceeEEccccCCeeeecchhhcc
Confidence 456788996543 13345566799999999999995
No 206
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=19 Score=35.06 Aligned_cols=49 Identities=29% Similarity=0.541 Sum_probs=36.7
Q ss_pred CCcCccccccccCC--C-ceeecCC-------CCCcccHHHHHHHHhcC-CCCCCcCcCC
Q 037216 174 GGDCAICLFKFEPH--D-QLRLLPL-------CCHAFHARCIDTWLESN-LTCPLCRSPI 222 (379)
Q Consensus 174 ~~~C~ICl~~~~~~--~-~~~~Lp~-------C~H~FH~~Ci~~WL~~~-~~CP~CR~~l 222 (379)
...|.||...|... . ..+++.. |||-.+..|++.-+.+. -.||.|+...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 45799999999832 2 3344544 99999999999977653 4899998753
No 207
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.55 E-value=1.4e+02 Score=24.52 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 037216 109 SISLCLLLRHLNRRCLR 125 (379)
Q Consensus 109 ~i~l~~l~r~~~rr~~r 125 (379)
..+.|.+.|...||--.
T Consensus 50 lwfvCC~kRkrsRrPIY 66 (94)
T PF05393_consen 50 LWFVCCKKRKRSRRPIY 66 (94)
T ss_pred HHHHHHHHhhhccCCcc
Confidence 33344444444444433
No 208
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.25 E-value=34 Score=33.95 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhhhcccccccchh--heehhhHHH
Q 037216 10 VISILARSQSQHQCMM--IYYLSPMII 34 (379)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~~~ 34 (379)
||+.--.+=-++-|-. |--|..||.
T Consensus 51 iVtwtNnTLp~~~CP~eeI~~L~~~L~ 77 (290)
T PF05454_consen 51 IVTWTNNTLPTSPCPKEEIEKLRKRLV 77 (290)
T ss_dssp ---------------------------
T ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHh
Confidence 3333333334555644 444555553
No 209
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.16 E-value=32 Score=28.55 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Q 037216 87 SMENLKPSLIIIILILAITVFLSISLCLLLRHLNRRCLRHLSTV 130 (379)
Q Consensus 87 s~~~~~~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr~~r~~~~~ 130 (379)
+..+....++++++.+++++++++++..++-...|+......+.
T Consensus 56 ~~~~~~~iili~lls~v~IlVily~IyYFVILRer~~~~~~~p~ 99 (101)
T PF06024_consen 56 SKQNNGNIILISLLSFVCILVILYAIYYFVILRERQKSIRNQPS 99 (101)
T ss_pred cccccccchHHHHHHHHHHHHHHhhheEEEEEecccccccCCCC
No 210
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=20.06 E-value=76 Score=27.91 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037216 106 VFLSISLCLLLRHLNRR 122 (379)
Q Consensus 106 l~v~i~l~~l~r~~~rr 122 (379)
++++..+.++.|+++|+
T Consensus 113 i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 113 IIITCCLLSVYRFTRRT 129 (139)
T ss_pred HHHHHHHHhhheeeecc
Confidence 33444444444444443
No 211
>PHA02849 putative transmembrane protein; Provisional
Probab=20.05 E-value=2.2e+02 Score=22.93 Aligned_cols=6 Identities=0% Similarity=0.285 Sum_probs=2.2
Q ss_pred CCchhH
Q 037216 91 LKPSLI 96 (379)
Q Consensus 91 ~~~~i~ 96 (379)
|+...+
T Consensus 12 f~~g~v 17 (82)
T PHA02849 12 FDAGAV 17 (82)
T ss_pred cccchH
Confidence 333333
Done!