Query 037216
Match_columns 379
No_of_seqs 354 out of 1873
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4E-17 1.4E-21 131.5 7.7 79 145-224 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.7E-16 9.4E-21 121.6 3.1 70 154-225 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.8E-14 6.2E-19 104.4 4.2 51 173-223 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 6E-14 2.1E-18 106.4 5.8 52 173-225 13-64 (69)
5 2ep4_A Ring finger protein 24; 99.5 4.9E-14 1.7E-18 108.3 5.2 52 173-225 14-65 (74)
6 2ect_A Ring finger protein 126 99.4 6.8E-14 2.3E-18 108.6 4.8 52 173-225 14-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.4 1.3E-13 4.3E-18 108.8 3.1 53 173-225 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.4 3.5E-13 1.2E-17 97.4 4.8 50 173-223 4-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 8.7E-13 3E-17 99.3 4.8 51 173-224 14-68 (69)
10 1v87_A Deltex protein 2; ring- 99.3 8.5E-13 2.9E-17 109.6 5.1 52 173-225 24-95 (114)
11 3ng2_A RNF4, snurf, ring finge 99.3 5.4E-13 1.8E-17 101.3 3.5 52 173-225 9-64 (71)
12 3dpl_R Ring-box protein 1; ubi 99.3 1.3E-12 4.3E-17 108.7 5.0 51 173-224 36-101 (106)
13 2d8s_A Cellular modulator of i 99.3 1.5E-12 5.1E-17 102.9 4.8 53 171-225 12-71 (80)
14 2xeu_A Ring finger protein 4; 99.3 1.1E-12 3.9E-17 97.2 3.2 52 173-225 2-57 (64)
15 2d8t_A Dactylidin, ring finger 99.2 3.1E-12 1.1E-16 97.7 3.5 48 173-224 14-61 (71)
16 1chc_A Equine herpes virus-1 r 99.2 5.7E-12 2E-16 95.0 4.0 49 173-224 4-52 (68)
17 2ecn_A Ring finger protein 141 99.2 2.4E-12 8.3E-17 97.7 1.7 48 173-225 14-61 (70)
18 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.6E-16 95.0 5.2 50 173-225 14-63 (72)
19 2ct2_A Tripartite motif protei 99.2 1.5E-11 5.2E-16 96.8 6.0 52 173-225 14-69 (88)
20 2csy_A Zinc finger protein 183 99.2 2.1E-11 7.1E-16 95.3 5.2 47 173-223 14-60 (81)
21 4a0k_B E3 ubiquitin-protein li 99.2 2.8E-12 9.6E-17 108.4 0.3 51 173-224 47-112 (117)
22 2ysl_A Tripartite motif-contai 99.2 2.5E-11 8.5E-16 92.6 5.5 49 173-225 19-70 (73)
23 2ecy_A TNF receptor-associated 99.2 3E-11 1E-15 90.8 5.2 49 173-225 14-63 (66)
24 2yur_A Retinoblastoma-binding 99.1 3.1E-11 1.1E-15 93.0 4.4 50 173-225 14-65 (74)
25 4ayc_A E3 ubiquitin-protein li 99.1 2.3E-11 7.8E-16 104.8 3.7 48 174-225 53-100 (138)
26 2ct0_A Non-SMC element 1 homol 99.1 4.9E-11 1.7E-15 92.9 4.6 52 173-227 14-67 (74)
27 2ecw_A Tripartite motif-contai 99.1 1E-10 3.5E-15 91.1 5.9 49 173-225 18-72 (85)
28 2ecv_A Tripartite motif-contai 99.1 9.4E-11 3.2E-15 91.3 5.4 49 173-225 18-72 (85)
29 1t1h_A Gspef-atpub14, armadill 99.1 1.2E-10 4.1E-15 90.1 5.2 49 173-225 7-56 (78)
30 2egp_A Tripartite motif-contai 99.1 4E-11 1.4E-15 92.7 2.3 49 173-225 11-66 (79)
31 2ysj_A Tripartite motif-contai 99.0 1.8E-10 6.2E-15 85.6 5.3 42 173-218 19-63 (63)
32 3lrq_A E3 ubiquitin-protein li 99.0 9.1E-11 3.1E-15 95.7 4.0 48 173-224 21-70 (100)
33 4ap4_A E3 ubiquitin ligase RNF 99.0 7.7E-11 2.6E-15 99.1 3.5 52 173-225 6-61 (133)
34 2y43_A E3 ubiquitin-protein li 99.0 1.7E-10 5.7E-15 93.5 4.5 48 173-224 21-69 (99)
35 2ecj_A Tripartite motif-contai 99.0 2.2E-10 7.5E-15 83.3 4.5 42 173-218 14-58 (58)
36 1g25_A CDK-activating kinase a 99.0 2.6E-10 8.7E-15 85.4 4.8 51 174-225 3-56 (65)
37 2ckl_A Polycomb group ring fin 99.0 2.2E-10 7.5E-15 94.3 4.1 49 173-225 14-63 (108)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 1.7E-10 6E-15 96.9 2.9 52 173-225 71-126 (133)
39 3fl2_A E3 ubiquitin-protein li 99.0 3.4E-10 1.2E-14 95.4 4.4 48 173-224 51-99 (124)
40 3ztg_A E3 ubiquitin-protein li 99.0 5.6E-10 1.9E-14 89.0 5.3 48 173-223 12-61 (92)
41 1jm7_A BRCA1, breast cancer ty 98.9 5.1E-10 1.8E-14 92.0 4.7 48 174-225 21-71 (112)
42 2ckl_B Ubiquitin ligase protei 98.9 5E-10 1.7E-14 98.9 4.6 50 173-225 53-103 (165)
43 1z6u_A NP95-like ring finger p 98.9 1.3E-09 4.4E-14 95.5 4.8 49 173-225 77-126 (150)
44 3hct_A TNF receptor-associated 98.9 1.1E-09 3.8E-14 91.6 3.9 49 173-225 17-66 (118)
45 2vje_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 82.5 3.2 47 173-223 7-56 (64)
46 1rmd_A RAG1; V(D)J recombinati 98.8 1.8E-09 6.2E-14 89.8 4.0 48 174-225 23-71 (116)
47 3l11_A E3 ubiquitin-protein li 98.8 5.9E-10 2E-14 92.6 0.9 48 173-224 14-62 (115)
48 1e4u_A Transcriptional repress 98.8 3.8E-09 1.3E-13 82.8 5.5 52 173-225 10-63 (78)
49 2y1n_A E3 ubiquitin-protein li 98.8 3.1E-09 1.1E-13 106.3 4.8 49 173-225 331-380 (389)
50 2kr4_A Ubiquitin conjugation f 98.8 5.1E-09 1.7E-13 83.1 5.0 49 173-225 13-61 (85)
51 2vje_B MDM4 protein; proto-onc 98.8 2.8E-09 9.6E-14 79.9 2.6 47 173-223 6-55 (63)
52 2kre_A Ubiquitin conjugation f 98.7 6.3E-09 2.1E-13 85.3 4.8 49 173-225 28-76 (100)
53 1wgm_A Ubiquitin conjugation f 98.7 8.1E-09 2.8E-13 84.3 5.4 49 173-225 21-70 (98)
54 3knv_A TNF receptor-associated 98.7 3.3E-09 1.1E-13 92.1 2.7 49 173-225 30-79 (141)
55 1bor_A Transcription factor PM 98.7 5.2E-09 1.8E-13 76.4 2.3 46 173-225 5-50 (56)
56 4ic3_A E3 ubiquitin-protein li 98.7 7E-09 2.4E-13 80.0 2.4 44 173-224 23-67 (74)
57 1jm7_B BARD1, BRCA1-associated 98.7 5.6E-09 1.9E-13 87.2 1.7 46 173-224 21-67 (117)
58 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.1E-08 3.9E-13 100.4 2.9 53 173-225 307-374 (381)
59 2ea5_A Cell growth regulator w 98.6 4.8E-08 1.6E-12 74.4 4.4 44 173-224 14-58 (68)
60 2c2l_A CHIP, carboxy terminus 98.5 3.2E-08 1.1E-12 92.9 4.0 48 173-224 207-255 (281)
61 2yu4_A E3 SUMO-protein ligase 98.5 4.4E-08 1.5E-12 79.0 3.3 46 173-221 6-59 (94)
62 2ecg_A Baculoviral IAP repeat- 98.5 5.6E-08 1.9E-12 74.9 3.5 43 174-224 25-68 (75)
63 3hcs_A TNF receptor-associated 98.5 5.7E-08 1.9E-12 85.9 3.4 49 173-225 17-66 (170)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1.2E-07 4.1E-12 70.7 4.4 47 173-223 5-58 (60)
65 2yho_A E3 ubiquitin-protein li 98.4 1.1E-07 3.8E-12 74.4 2.1 43 174-224 18-61 (79)
66 1wim_A KIAA0161 protein; ring 98.3 1.8E-07 6E-12 75.0 3.0 48 173-221 4-61 (94)
67 2f42_A STIP1 homology and U-bo 98.3 2.4E-07 8.1E-12 83.6 3.8 49 173-225 105-154 (179)
68 2bay_A PRE-mRNA splicing facto 98.2 4.2E-07 1.4E-11 67.8 2.7 49 174-225 3-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 3.4E-07 1.2E-11 90.5 1.2 44 173-224 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 1.8E-06 6.1E-11 82.1 2.5 49 173-224 180-232 (267)
71 3vk6_A E3 ubiquitin-protein li 97.9 7.7E-06 2.6E-10 66.7 3.7 47 176-225 3-50 (101)
72 3nw0_A Non-structural maintena 97.8 1.1E-05 3.9E-10 75.6 3.4 50 174-226 180-231 (238)
73 2ko5_A Ring finger protein Z; 93.1 0.042 1.4E-06 44.2 2.2 48 173-225 27-74 (99)
74 2lri_C Autoimmune regulator; Z 92.7 0.093 3.2E-06 39.4 3.6 46 173-222 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 90.7 0.15 5E-06 40.5 3.0 34 174-208 3-36 (101)
76 1wil_A KIAA1045 protein; ring 85.8 0.89 3.1E-05 35.8 4.4 34 173-208 14-47 (89)
77 3lqh_A Histone-lysine N-methyl 80.2 0.65 2.2E-05 41.6 1.8 49 174-222 2-64 (183)
78 3u5n_A E3 ubiquitin-protein li 77.2 0.47 1.6E-05 42.9 -0.1 46 173-222 6-55 (207)
79 3o36_A Transcription intermedi 76.2 0.55 1.9E-05 41.5 0.1 46 173-222 3-52 (184)
80 1we9_A PHD finger family prote 75.9 0.48 1.6E-05 34.7 -0.3 48 173-220 5-57 (64)
81 2jwa_A Receptor tyrosine-prote 74.1 7.3 0.00025 26.9 5.3 29 93-122 10-38 (44)
82 2l5u_A Chromodomain-helicase-D 73.9 2 6.8E-05 31.3 2.6 44 173-220 10-57 (61)
83 1f62_A Transcription factor WS 70.0 2 6.7E-05 29.8 1.8 44 176-220 2-49 (51)
84 1mm2_A MI2-beta; PHD, zinc fin 68.8 1.3 4.6E-05 32.2 0.7 46 173-222 8-57 (61)
85 3m62_A Ubiquitin conjugation f 68.4 3.4 0.00012 45.6 4.0 49 173-225 890-939 (968)
86 2vpb_A Hpygo1, pygopus homolog 68.0 3.9 0.00013 30.2 3.1 35 173-207 7-42 (65)
87 2puy_A PHD finger protein 21A; 65.1 0.38 1.3E-05 35.0 -3.0 47 173-223 4-54 (60)
88 2ysm_A Myeloid/lymphoid or mix 64.8 2 6.7E-05 34.8 1.0 46 173-219 6-55 (111)
89 1fp0_A KAP-1 corepressor; PHD 64.8 2.6 9E-05 33.3 1.7 46 173-222 24-73 (88)
90 1wep_A PHF8; structural genomi 63.2 5.7 0.0002 30.1 3.3 48 173-221 11-63 (79)
91 2l2t_A Receptor tyrosine-prote 63.1 15 0.00052 25.2 5.1 12 97-108 12-23 (44)
92 2lbm_A Transcriptional regulat 62.0 9.6 0.00033 32.6 4.8 45 173-221 62-117 (142)
93 2ro1_A Transcription intermedi 61.8 1.9 6.5E-05 38.4 0.4 44 174-221 2-49 (189)
94 2kgg_A Histone demethylase jar 61.7 2.7 9.3E-05 29.5 1.1 44 176-219 4-52 (52)
95 2k16_A Transcription initiatio 59.7 2.5 8.6E-05 31.7 0.7 49 173-222 17-69 (75)
96 3v43_A Histone acetyltransfera 58.1 2.5 8.4E-05 34.4 0.4 45 176-220 63-111 (112)
97 2ri7_A Nucleosome-remodeling f 57.5 2.3 7.8E-05 37.0 0.1 47 173-220 7-58 (174)
98 3ql9_A Transcriptional regulat 57.0 12 0.00043 31.4 4.6 45 173-221 56-111 (129)
99 2yql_A PHD finger protein 21A; 56.2 1.1 3.8E-05 31.9 -1.7 44 173-220 8-55 (56)
100 2knc_A Integrin alpha-IIB; tra 56.1 29 0.00098 24.9 5.7 26 93-118 11-36 (54)
101 2l8s_A Integrin alpha-1; trans 54.5 24 0.00083 25.3 5.1 26 93-118 8-33 (54)
102 3v43_A Histone acetyltransfera 53.4 19 0.00065 29.0 5.1 48 173-220 4-63 (112)
103 2klu_A T-cell surface glycopro 53.1 17 0.00057 27.2 4.1 17 101-117 13-29 (70)
104 2xb1_A Pygopus homolog 2, B-ce 51.5 7.7 0.00026 31.3 2.4 48 174-221 3-61 (105)
105 2e6s_A E3 ubiquitin-protein li 51.3 2.2 7.6E-05 32.7 -0.9 46 174-220 26-76 (77)
106 3mpx_A FYVE, rhogef and PH dom 50.9 3.2 0.00011 40.8 0.0 50 173-222 374-430 (434)
107 1xwh_A Autoimmune regulator; P 50.2 2.1 7.1E-05 31.6 -1.2 44 173-220 7-54 (66)
108 1vfy_A Phosphatidylinositol-3- 48.9 12 0.00042 27.8 3.0 33 174-206 11-43 (73)
109 2yt5_A Metal-response element- 46.7 9.6 0.00033 27.6 2.1 49 173-221 5-61 (66)
110 3t7l_A Zinc finger FYVE domain 46.6 11 0.00036 29.5 2.4 36 174-209 20-55 (90)
111 1joc_A EEA1, early endosomal a 46.4 10 0.00035 31.5 2.4 34 174-207 69-102 (125)
112 3asl_A E3 ubiquitin-protein li 45.5 2.9 0.0001 31.3 -1.0 44 176-220 20-68 (70)
113 1y02_A CARP2, FYVE-ring finger 44.9 2.4 8.2E-05 35.4 -1.7 49 173-221 18-66 (120)
114 1dvp_A HRS, hepatocyte growth 44.8 9.2 0.00031 34.5 2.0 35 173-207 160-194 (220)
115 1wem_A Death associated transc 44.4 8.2 0.00028 28.9 1.4 46 174-221 16-70 (76)
116 2lv9_A Histone-lysine N-methyl 44.2 6.4 0.00022 31.3 0.8 45 175-221 29-76 (98)
117 3zyq_A Hepatocyte growth facto 44.0 9.8 0.00033 34.6 2.1 36 173-208 163-198 (226)
118 1g47_A Pinch protein; LIM doma 43.8 18 0.0006 26.4 3.2 42 173-224 10-51 (77)
119 1z2q_A LM5-1; membrane protein 42.4 15 0.00053 28.1 2.7 35 173-207 20-54 (84)
120 1weo_A Cellulose synthase, cat 41.8 58 0.002 25.7 5.9 51 173-223 15-69 (93)
121 2yw8_A RUN and FYVE domain-con 41.1 16 0.00054 27.9 2.6 35 173-207 18-52 (82)
122 2e6r_A Jumonji/ARID domain-con 40.8 2.5 8.5E-05 33.4 -2.1 47 173-220 15-65 (92)
123 3ask_A E3 ubiquitin-protein li 40.7 4.4 0.00015 37.4 -0.8 45 175-220 175-224 (226)
124 1wfk_A Zinc finger, FYVE domai 40.7 16 0.00055 28.4 2.6 35 173-207 8-42 (88)
125 2ku3_A Bromodomain-containing 39.7 29 0.001 25.8 3.8 48 173-220 15-65 (71)
126 1iij_A ERBB-2 receptor protein 39.3 11 0.00036 24.8 1.1 27 95-122 8-34 (35)
127 1x64_A Alpha-actinin-2 associa 39.1 30 0.001 26.1 3.9 40 173-224 24-63 (89)
128 2kwj_A Zinc finger protein DPF 38.6 18 0.00063 29.2 2.8 45 175-219 2-59 (114)
129 1wyh_A SLIM 2, skeletal muscle 37.8 24 0.00082 25.2 3.1 41 174-224 5-45 (72)
130 2co8_A NEDD9 interacting prote 37.8 32 0.0011 25.6 3.9 42 173-225 14-55 (82)
131 1x4u_A Zinc finger, FYVE domai 37.4 19 0.00067 27.5 2.6 34 173-206 13-46 (84)
132 3shb_A E3 ubiquitin-protein li 37.4 4.2 0.00014 31.1 -1.3 44 176-220 28-76 (77)
133 2l43_A N-teminal domain from h 37.2 28 0.00096 27.0 3.5 50 173-222 24-76 (88)
134 2knc_B Integrin beta-3; transm 36.9 38 0.0013 25.9 4.1 22 96-117 12-33 (79)
135 2cs3_A Protein C14ORF4, MY039 36.8 52 0.0018 25.6 4.8 39 173-211 14-52 (93)
136 2k1a_A Integrin alpha-IIB; sin 35.7 47 0.0016 22.5 3.9 24 93-116 9-32 (42)
137 1x4k_A Skeletal muscle LIM-pro 35.6 25 0.00084 25.2 2.8 42 174-225 5-46 (72)
138 1weu_A Inhibitor of growth fam 35.6 19 0.00064 28.4 2.2 44 173-221 35-85 (91)
139 2gmg_A Hypothetical protein PF 35.4 8.4 0.00029 31.4 0.2 25 196-225 73-97 (105)
140 1x63_A Skeletal muscle LIM-pro 35.1 32 0.0011 25.3 3.4 42 174-225 15-56 (82)
141 4gne_A Histone-lysine N-methyl 35.0 17 0.00059 29.5 2.0 46 173-224 14-65 (107)
142 1zfo_A LAsp-1; LIM domain, zin 33.4 15 0.0005 22.9 1.0 28 175-205 4-31 (31)
143 1zbd_B Rabphilin-3A; G protein 33.0 19 0.00065 30.3 2.0 34 173-206 54-88 (134)
144 3f6q_B LIM and senescent cell 32.7 18 0.00062 25.7 1.6 42 173-224 10-51 (72)
145 1x61_A Thyroid receptor intera 32.6 30 0.001 24.8 2.8 40 174-223 5-44 (72)
146 1wen_A Inhibitor of growth fam 32.5 26 0.00089 26.1 2.5 44 173-221 15-65 (71)
147 1z60_A TFIIH basal transcripti 32.2 19 0.00066 26.2 1.6 42 175-218 16-58 (59)
148 2dj7_A Actin-binding LIM prote 31.3 33 0.0011 25.5 3.0 40 173-223 14-53 (80)
149 1x4l_A Skeletal muscle LIM-pro 31.1 33 0.0011 24.6 2.9 40 174-223 5-46 (72)
150 2cu8_A Cysteine-rich protein 2 30.9 26 0.00088 25.5 2.3 40 174-224 9-48 (76)
151 1iml_A CRIP, cysteine rich int 29.7 20 0.00067 26.2 1.4 37 176-223 2-38 (76)
152 2l3k_A Rhombotin-2, linker, LI 29.7 28 0.00097 28.0 2.5 37 176-222 10-46 (123)
153 2o35_A Hypothetical protein DU 29.5 21 0.00072 28.8 1.6 13 199-211 42-54 (105)
154 3fyb_A Protein of unknown func 29.2 21 0.00073 28.7 1.6 12 199-210 41-52 (104)
155 2ks1_B Epidermal growth factor 29.0 51 0.0017 22.5 3.2 20 102-121 21-40 (44)
156 1wev_A Riken cDNA 1110020M19; 28.6 18 0.00062 28.0 1.1 49 174-222 16-73 (88)
157 3i2d_A E3 SUMO-protein ligase 28.5 41 0.0014 33.1 3.8 49 175-226 250-302 (371)
158 1x68_A FHL5 protein; four-and- 27.5 45 0.0015 24.2 3.1 40 174-223 5-46 (76)
159 2pv0_B DNA (cytosine-5)-methyl 27.4 40 0.0014 33.4 3.5 44 173-220 92-147 (386)
160 4fo9_A E3 SUMO-protein ligase 26.1 49 0.0017 32.4 3.8 49 175-226 216-268 (360)
161 2k9j_B Integrin beta-3; transm 25.9 1.1E+02 0.0037 20.6 4.5 25 96-120 11-35 (43)
162 2dar_A PDZ and LIM domain prot 25.9 43 0.0015 25.3 2.8 40 173-224 24-63 (90)
163 2cor_A Pinch protein; LIM doma 25.5 63 0.0021 23.8 3.6 41 173-225 14-54 (79)
164 2d8v_A Zinc finger FYVE domain 25.2 40 0.0014 25.1 2.3 30 173-207 7-37 (67)
165 2zet_C Melanophilin; complex, 25.0 30 0.001 29.8 1.9 46 173-220 67-116 (153)
166 2ysm_A Myeloid/lymphoid or mix 25.0 8 0.00028 31.0 -1.7 45 176-221 56-104 (111)
167 3o70_A PHD finger protein 13; 24.5 12 0.00041 27.7 -0.7 46 173-220 18-66 (68)
168 2pk7_A Uncharacterized protein 24.5 16 0.00056 27.3 0.1 20 206-225 2-21 (69)
169 3a1b_A DNA (cytosine-5)-methyl 24.4 55 0.0019 28.4 3.4 33 173-209 78-112 (159)
170 2klu_A T-cell surface glycopro 23.9 66 0.0023 24.0 3.3 29 94-122 9-38 (70)
171 1x62_A C-terminal LIM domain p 23.3 52 0.0018 24.1 2.8 39 173-223 14-52 (79)
172 2l6w_A Beta-type platelet-deri 28.2 18 0.00062 24.2 0.0 27 95-121 8-34 (39)
173 2l2t_A Receptor tyrosine-prote 22.4 69 0.0024 21.9 2.9 20 93-112 11-30 (44)
174 1wig_A KIAA1808 protein; LIM d 22.2 54 0.0018 23.8 2.6 38 174-223 5-42 (73)
175 2jny_A Uncharacterized BCR; st 21.8 14 0.00049 27.5 -0.7 20 206-225 4-23 (67)
176 2ehe_A Four and A half LIM dom 21.8 70 0.0024 23.4 3.2 41 174-224 15-55 (82)
177 1nyp_A Pinch protein; LIM doma 21.0 49 0.0017 23.2 2.1 39 174-224 5-43 (66)
178 2d8y_A Eplin protein; LIM doma 21.0 61 0.0021 24.4 2.8 41 173-224 14-54 (91)
179 2jo1_A Phospholemman; FXYD1, N 20.3 1E+02 0.0035 23.2 3.7 24 95-118 16-39 (72)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=131.51 Aligned_cols=79 Identities=28% Similarity=0.559 Sum_probs=69.9
Q ss_pred CCCCCCCCHHHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 145 RVSPDNPAFSVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 145 r~~~~~l~~~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.....+++++.|++||.+.+.........+..|+||+++|..++.++.+| |||.||..||+.|+..+.+||+||..+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 44456899999999999999877665556788999999999888899999 99999999999999999999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-16 Score=121.61 Aligned_cols=70 Identities=39% Similarity=0.910 Sum_probs=59.6
Q ss_pred HHHhhCCceeecccccCCCCCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 154 SVMDSLPLFAFSSVSRRSSSGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 154 ~~i~slP~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
+.+++||.+++...... ..+.+|+||+++|..++.++.+| |+|+||..||+.|++.+.+||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQ-SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCS-SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCcccc-CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34678898888765432 35678999999999888889999 999999999999999999999999988654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.8e-14 Score=104.42 Aligned_cols=51 Identities=49% Similarity=1.148 Sum_probs=46.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
.+.+|+||+++|..++.+..++.|||.||..||+.|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467999999999988888888779999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=106.38 Aligned_cols=52 Identities=44% Similarity=0.991 Sum_probs=47.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++.|..++.++.++ |||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 5678999999998888889999 999999999999999999999999988654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.9e-14 Score=108.34 Aligned_cols=52 Identities=44% Similarity=1.043 Sum_probs=47.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+.+|+||+++|..+..+++++ |+|.||..||..|++.+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 5679999999999888888999 999999999999999999999999988653
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=6.8e-14 Score=108.59 Aligned_cols=52 Identities=38% Similarity=0.958 Sum_probs=47.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+.+|+||++.|..++.+++++ |||.||..||..|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 5679999999999888888898 999999999999999999999999998765
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=108.76 Aligned_cols=53 Identities=30% Similarity=0.750 Sum_probs=42.8
Q ss_pred CCCcCccccccccC-----------CCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEP-----------HDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~-----------~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+..|+||+++|.. ++.++.++.|||+||.+||+.||..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888887753 445666666999999999999999999999999987643
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=3.5e-13 Score=97.40 Aligned_cols=50 Identities=32% Similarity=0.798 Sum_probs=43.6
Q ss_pred CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
.+.+|+||++++..++ .+++++ |||.||..||+.|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4679999999996544 567787 9999999999999999999999999874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.7e-13 Score=99.27 Aligned_cols=51 Identities=27% Similarity=0.604 Sum_probs=43.4
Q ss_pred CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+||++.|... +.+.+++ |||.||..||+.|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 567999999998643 3346787 99999999999999999999999998753
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.33 E-value=8.5e-13 Score=109.56 Aligned_cols=52 Identities=33% Similarity=0.674 Sum_probs=42.0
Q ss_pred CCCcCccccccccCCC---------------ceeecCCCCCcccHHHHHHHH-----hcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHD---------------QLRLLPLCCHAFHARCIDTWL-----ESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~---------------~~~~Lp~C~H~FH~~Ci~~WL-----~~~~~CP~CR~~l~~~ 225 (379)
.+.+|+||+++|..+. .+++++ |+|+||..||+.|| ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999996543 334677 99999999999999 4467999999987654
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.32 E-value=5.4e-13 Score=101.26 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=44.6
Q ss_pred CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+.+|+||++.+... +.+..++ |||.||..||+.|+..+.+||+||..+..+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 567899999998642 4457777 999999999999999999999999988754
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.3e-12 Score=108.68 Aligned_cols=51 Identities=31% Similarity=0.574 Sum_probs=43.1
Q ss_pred CCCcCccccccccCCC---------------ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHD---------------QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~---------------~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.++.|+||++.|...- .+++++ |+|.||..||+.||..+.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 5679999999997541 356677 99999999999999999999999998643
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=102.95 Aligned_cols=53 Identities=32% Similarity=0.752 Sum_probs=44.8
Q ss_pred CCCCCcCccccccccCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCCCcCcCCcCC
Q 037216 171 SSSGGDCAICLFKFEPHDQLRLLPLCC-----HAFHARCIDTWLESN--LTCPLCRSPIIAT 225 (379)
Q Consensus 171 ~~~~~~C~ICl~~~~~~~~~~~Lp~C~-----H~FH~~Ci~~WL~~~--~~CP~CR~~l~~~ 225 (379)
...+..|.||+++|..++.+ ++| |+ |.||.+||+.||..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 33667999999999877766 688 96 999999999999875 4899999988654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=97.18 Aligned_cols=52 Identities=27% Similarity=0.583 Sum_probs=44.2
Q ss_pred CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+.+|+||++.+... +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999998642 3456777 999999999999999999999999988754
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=97.73 Aligned_cols=48 Identities=33% Similarity=0.571 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+||++.+ .....++ |||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~---~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTC---VHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBC---SSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCccc---CCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 567899999998 4456778 99999999999999999999999998754
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=5.7e-12 Score=94.98 Aligned_cols=49 Identities=41% Similarity=0.897 Sum_probs=42.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.+..|+||++.+. +....++ |||.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4679999999985 3357788 99999999999999999999999998753
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-12 Score=97.71 Aligned_cols=48 Identities=33% Similarity=0.937 Sum_probs=42.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++.+.. .+++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 56799999999854 6788 999999999999999999999999988754
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=94.96 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=41.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++.+.+ .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 46789999999853 333347 999999999999999889999999988654
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=96.84 Aligned_cols=52 Identities=29% Similarity=0.675 Sum_probs=44.6
Q ss_pred CCCcCccccccccCCCc-eeecCCCCCcccHHHHHHHHhcC---CCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQ-LRLLPLCCHAFHARCIDTWLESN---LTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~-~~~Lp~C~H~FH~~Ci~~WL~~~---~~CP~CR~~l~~~ 225 (379)
...+|+||++.|...+. .++++ |||.||..||..|+..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 56789999999976654 77888 99999999999999875 7999999987654
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=95.34 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=41.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
....|+||++.|. ...+++ |||.||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ---NPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC---SEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc---CeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4678999999994 455688 9999999999999998899999999875
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=2.8e-12 Score=108.43 Aligned_cols=51 Identities=31% Similarity=0.612 Sum_probs=1.2
Q ss_pred CCCcCccccccccCC-------------C--ceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPH-------------D--QLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~-------------~--~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.++.|+||+++|... + .+..++ |+|.||..||+.||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 567999999999642 2 223346 99999999999999999999999998643
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.5e-11 Score=92.57 Aligned_cols=49 Identities=29% Similarity=0.636 Sum_probs=41.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~CR~~l~~~ 225 (379)
....|+||++.+. ...+++ |||.||..||..|+. .+..||+||..+..+
T Consensus 19 ~~~~C~IC~~~~~---~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQ---KPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCS---SEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccC---CeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 5679999999984 456677 999999999999996 456899999988654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=90.80 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=40.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~l~~~ 225 (379)
....|+||++.+.. ...++ |||.||..||..|+. .+.+||+||..+..+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 56789999999853 34467 999999999999994 567999999988654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=3.1e-11 Score=93.02 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=41.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~~l~~~ 225 (379)
....|+||++.|. ....++.|||.||..||..|+..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4678999999995 345566699999999999999865 6899999976554
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=2.3e-11 Score=104.83 Aligned_cols=48 Identities=33% Similarity=0.841 Sum_probs=42.3
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
+..|+||++.| ...+++| |||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~---~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYF---IEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBC---SSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCccc---CCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45799999999 4567788 999999999999999999999999998654
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=4.9e-11 Score=92.94 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=43.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCCcCcCCcCCcc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPIIATET 227 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~~l~~~~~ 227 (379)
...+|+||++.+..++... . |+|.||..||++||+.+ .+||+||+++..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 4579999999998766554 4 99999999999999887 899999999876543
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=1e-10 Score=91.08 Aligned_cols=49 Identities=33% Similarity=0.610 Sum_probs=41.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc------CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES------NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~------~~~CP~CR~~l~~~ 225 (379)
....|+||++.+. ...+++ |||.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCS---SCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhC---cceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 5679999999984 344788 9999999999999987 67899999987653
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.4e-11 Score=91.29 Aligned_cols=49 Identities=29% Similarity=0.603 Sum_probs=41.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc------CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES------NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~------~~~CP~CR~~l~~~ 225 (379)
....|+||++.+. ....++ |||.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccC---CceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 5679999999984 345677 9999999999999987 78999999988653
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=1.2e-10 Score=90.08 Aligned_cols=49 Identities=18% Similarity=0.450 Sum_probs=42.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
....|+||++.|. ...+++ |||.||..||..|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~---~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCS---SEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCcccccc---CCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 5679999999984 456678 9999999999999987 78999999988654
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.06 E-value=4e-11 Score=92.67 Aligned_cols=49 Identities=24% Similarity=0.502 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-------CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-------NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-------~~~CP~CR~~l~~~ 225 (379)
....|+||++.|. ....++ |||.||..||..|+.. ...||+||..+...
T Consensus 11 ~~~~C~IC~~~~~---~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECS---SCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccC---CeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 5678999999995 345678 9999999999999986 56899999988653
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=85.57 Aligned_cols=42 Identities=33% Similarity=0.699 Sum_probs=36.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLC 218 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~C 218 (379)
.+..|+||++.+. ...+++ |||.||..||..|+. .+.+||+|
T Consensus 19 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ---KPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS---SCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC---CeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5679999999984 455677 999999999999998 45689998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=9.1e-11 Score=95.71 Aligned_cols=48 Identities=33% Similarity=0.740 Sum_probs=41.0
Q ss_pred CCCcCccccccccCCCceee-cCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRL-LPLCCHAFHARCIDTWLESN-LTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~-Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~ 224 (379)
....|+||++.|. ..+. ++ |||.||..||..|+... .+||+||.++..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCcccc---CccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4568999999994 4455 77 99999999999999987 699999998854
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=7.7e-11 Score=99.07 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=44.5
Q ss_pred CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
+...|+||++.|... +.++.++ |||.||..||+.|+..+.+||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 567899999998643 4457787 999999999999999999999999988654
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=93.51 Aligned_cols=48 Identities=25% Similarity=0.645 Sum_probs=41.0
Q ss_pred CCCcCccccccccCCCceeec-CCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~L-p~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+||++.|. ....+ + |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN---IAMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS---SEEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhC---CcCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3568999999995 34445 6 99999999999999988999999998865
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=83.30 Aligned_cols=42 Identities=31% Similarity=0.926 Sum_probs=35.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLC 218 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~C 218 (379)
....|+||++.+.. ..+++ |||.||..||..|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 56799999999954 45677 999999999999954 46789998
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=2.6e-10 Score=85.38 Aligned_cols=51 Identities=22% Similarity=0.534 Sum_probs=40.6
Q ss_pred CCcCccccc-cccCCCce-eecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 174 GGDCAICLF-KFEPHDQL-RLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~-~~~~~~~~-~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
+..|+||++ .+...... .+++ |||.||..||+.|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 77655433 4567 9999999999999765 46899999988654
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.99 E-value=2.2e-10 Score=94.31 Aligned_cols=49 Identities=29% Similarity=0.614 Sum_probs=41.9
Q ss_pred CCCcCccccccccCCCceeec-CCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~L-p~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+..|+||++.|. ....+ + |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh---CcCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4678999999994 34454 7 999999999999999889999999988754
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=1.7e-10 Score=96.86 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=44.0
Q ss_pred CCCcCccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPH----DQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~----~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++.|... .....++ |||.||..||+.|+..+++||+||.++..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 567899999998642 3346777 999999999999999999999999988654
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.96 E-value=3.4e-10 Score=95.45 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~ 224 (379)
....|+||++.|. ....++ |||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3568999999994 556778 999999999999998544 89999998865
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.96 E-value=5.6e-10 Score=88.98 Aligned_cols=48 Identities=27% Similarity=0.553 Sum_probs=40.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~CR~~l~ 223 (379)
....|+||++.|. ...+++.|||.||..||..|+... ..||+||..+.
T Consensus 12 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5678999999995 445666699999999999999753 58999999874
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=5.1e-10 Score=92.02 Aligned_cols=48 Identities=29% Similarity=0.582 Sum_probs=40.1
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC---CCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL---TCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~---~CP~CR~~l~~~ 225 (379)
...|+||++.+. ....++ |||.||..||..|+..+. +||+||..+...
T Consensus 21 ~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIK---EPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCS---SCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhc---CeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 468999999984 345577 999999999999998654 899999987653
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=5e-10 Score=98.90 Aligned_cols=50 Identities=38% Similarity=0.687 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
....|+||++.|.. .+.+++ |||.||..||..|+.. +..||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 34589999999953 343447 9999999999999987 77899999988643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=95.51 Aligned_cols=49 Identities=20% Similarity=0.448 Sum_probs=41.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~ 225 (379)
....|+||++.| ....+++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~---~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV---YQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC---SSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhh---cCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346899999998 4455688 999999999999998754 899999988765
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.86 E-value=1.1e-09 Score=91.63 Aligned_cols=49 Identities=27% Similarity=0.591 Sum_probs=41.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~ 225 (379)
....|+||++.+. ....++ |||.||..||..|+.... +||+||..+...
T Consensus 17 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALR---EAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhc---CeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5678999999984 446677 999999999999998765 999999988654
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=1.1e-09 Score=82.47 Aligned_cols=47 Identities=26% Similarity=0.479 Sum_probs=39.9
Q ss_pred CCCcCccccccccCCCceeec--CCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLL--PLCCHA-FHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~L--p~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
.+.+|+||++.+ ....++ | |||. |+..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~---~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRP---KNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSC---SCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCC---CCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999887 444455 8 9999 899999999998899999999874
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=1.8e-09 Score=89.80 Aligned_cols=48 Identities=31% Similarity=0.569 Sum_probs=40.9
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
...|+||++.+. ....++ |||.||..||..|+.. ..+||+||..+...
T Consensus 23 ~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILA---DPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhc---CcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 568999999984 455677 9999999999999987 67999999987653
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.82 E-value=5.9e-10 Score=92.64 Aligned_cols=48 Identities=31% Similarity=0.750 Sum_probs=40.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~ 224 (379)
.+..|+||++.|. ..+.++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV---EPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS---SCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC---ceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3568999999984 456678 9999999999999976 6689999998753
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=3.8e-09 Score=82.84 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=40.4
Q ss_pred CCCcCccccccccCCC-ceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHD-QLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~-~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
.+..|+||++++...+ .+.-++ |||.||..|+..++.. +..||+||.++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 5678999999986433 222345 9999999999998743 56899999988654
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.78 E-value=3.1e-09 Score=106.31 Aligned_cols=49 Identities=31% Similarity=0.743 Sum_probs=42.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-SNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-~~~~CP~CR~~l~~~ 225 (379)
....|+||++.+ ..+..+| |||.||..|+..|+. .+.+||+||.++...
T Consensus 331 ~~~~C~ICle~~---~~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAEND---KDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSB---CCEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCC---CCeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 346899999998 5577888 999999999999998 678999999988653
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.78 E-value=5.1e-09 Score=83.12 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=43.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++-| ....+++ |||.|++.||..|+..+.+||+||.++...
T Consensus 13 ~~~~CpI~~~~m---~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLM---TDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBC---SSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchh---cCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 578999999999 5667888 999999999999999889999999987643
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=2.8e-09 Score=79.94 Aligned_cols=47 Identities=17% Similarity=0.412 Sum_probs=39.3
Q ss_pred CCCcCccccccccCCCceeec--CCCCCc-ccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLL--PLCCHA-FHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~L--p~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
.+..|.||++.. ....++ | |||. |+..|+..|...+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~---~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP---RDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB---SCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcC---CCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999876 333344 8 9998 999999999988889999999874
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.75 E-value=6.3e-09 Score=85.26 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=43.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++.| ....+++ |||.|++.||..|+..+.+||+||.++...
T Consensus 28 ~~~~CpI~~~~m---~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLM---TDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBC---SSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcc---cCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 578999999999 5667888 999999999999999889999999988654
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.74 E-value=8.1e-09 Score=84.30 Aligned_cols=49 Identities=22% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCCcCccccccccCCCceeecCCCC-CcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCC-HAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~-H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
.+..|+||++.| ....+++ || |.|++.||..||..+.+||+||.++...
T Consensus 21 ~~~~CpI~~~~m---~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLM---CDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBC---SSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccc---cCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 578999999999 5666788 99 9999999999999888999999988654
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.73 E-value=3.3e-09 Score=92.07 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL-TCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~-~CP~CR~~l~~~ 225 (379)
....|+||++.+. ....++ |||.||..||..|+.... +||+||.++..+
T Consensus 30 ~~~~C~IC~~~~~---~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 30 AKYLCSACRNVLR---RPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCcCCCCCChhhc---CcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 5679999999984 345577 999999999999998654 899999987543
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=5.2e-09 Score=76.43 Aligned_cols=46 Identities=26% Similarity=0.673 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+||++.|. ..++++ |||.||..||..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccC---CeEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4568999999995 457788 9999999999883 56899999987654
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.66 E-value=7e-09 Score=80.01 Aligned_cols=44 Identities=25% Similarity=0.597 Sum_probs=37.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.+..|+||++.+ ....++| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~---~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRN---IAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSB---CCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCC---CCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 356899999987 5677888 9999 999999998 799999998753
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=5.6e-09 Score=87.22 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=39.1
Q ss_pred CCCcCccccccccCCCceeec-CCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLL-PLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~L-p~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+||++.|. ...++ + |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~---~pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR---EPVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS---SCBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhh---CccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 4578999999994 45566 7 999999999999997 789999998854
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.61 E-value=1.1e-08 Score=100.40 Aligned_cols=53 Identities=21% Similarity=0.539 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCCce----eecCCCCCcccHHHHHHHHhcC-----------CCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQL----RLLPLCCHAFHARCIDTWLESN-----------LTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~----~~Lp~C~H~FH~~Ci~~WL~~~-----------~~CP~CR~~l~~~ 225 (379)
...+|+||++.+.++..+ ...+.|+|.||..||.+||+.. .+||.||++|..+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 567999999999873322 1223499999999999999752 4699999988754
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.8e-08 Score=74.41 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=37.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|.||++.. ..+.++| |||. ||..|+.. ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~---~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGT---VNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSC---CCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCC---CCEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 567899998876 5678899 9999 99999884 5799999998865
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=3.2e-08 Score=92.93 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~ 224 (379)
....|+||++.| ...+++| |||.||+.||..|+..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~---~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELM---REPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBC---SSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHh---cCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 567899999999 5667888 99999999999999864 459999998854
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=4.4e-08 Score=78.97 Aligned_cols=46 Identities=26% Similarity=0.477 Sum_probs=38.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC------CCCCC--cCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN------LTCPL--CRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~------~~CP~--CR~~ 221 (379)
....|+||++.| ....+++.|||.|++.||..||..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 467899999999 4556664599999999999999764 48999 9876
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=5.6e-08 Score=74.92 Aligned_cols=43 Identities=26% Similarity=0.613 Sum_probs=36.2
Q ss_pred CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
+..|+||++.+ ..+.++| |||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~---~~~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN---IAIVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC---CCBCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCC---CCEEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45899999987 5567788 9999 99999965 4799999998854
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.47 E-value=5.7e-08 Score=85.94 Aligned_cols=49 Identities=27% Similarity=0.608 Sum_probs=41.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~~ 225 (379)
....|+||++.+. ....++ |||.||..||..|+... .+||+||..+...
T Consensus 17 ~~~~C~IC~~~~~---~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALR---EAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhc---CcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 5679999999984 445677 99999999999999764 4999999988654
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.47 E-value=1.2e-07 Score=70.67 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=37.0
Q ss_pred CCCcCccccccccCCCceeecCCCC--C---cccHHHHHHHHhc--CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCC--H---AFHARCIDTWLES--NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~--H---~FH~~Ci~~WL~~--~~~CP~CR~~l~ 223 (379)
....|.||+++. ++.+ ++| |. | .||..|++.|+.. +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 467899999984 2334 677 65 4 8999999999975 578999998764
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=1.1e-07 Score=74.43 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=36.8
Q ss_pred CCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
+..|.||++.+ ..+.++| |||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~---~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE---INSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB---CCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCccc---CcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 46899999887 5677889 9999 999999876 499999998754
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=1.8e-07 Score=75.05 Aligned_cols=48 Identities=21% Similarity=0.643 Sum_probs=39.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc--------CCCCCC--cCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES--------NLTCPL--CRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--------~~~CP~--CR~~ 221 (379)
...+|+||++++...+.+.+.+ |||.||.+|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999987655555567 9999999999999963 237999 9987
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.33 E-value=2.4e-07 Score=83.63 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=41.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN-LTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~-~~CP~CR~~l~~~ 225 (379)
....|+||++.| ....++| |||.|++.||..|+..+ .+||+||.++...
T Consensus 105 ~~f~CPI~~elm---~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELM---REPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBC---SSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccC---CCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 567899999999 4566778 99999999999999874 4699999988643
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.24 E-value=4.2e-07 Score=67.81 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
...|+||++.+. ...+++.|||+|.+.||.+||..+.+||+++.++..+
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 368999999995 4456623999999999999999888999999988654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.17 E-value=3.4e-07 Score=90.47 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=37.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHA-FHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~-FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
.+..|+||++.+ ..+..+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~---~~~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKE---VSVVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSB---CCEEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcC---CceEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 456899999988 5677888 9999 999999987 789999998753
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.8e-06 Score=82.11 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=39.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCCC--cCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN--LTCPL--CRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~--~~CP~--CR~~l~~ 224 (379)
....|+||++.|. +.++.+. |||.|++.||..|+..+ .+||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~--DPVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYE--APLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCS--SEEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCccc--CCeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4567999999994 3344345 99999999999999764 47999 9997754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.87 E-value=7.7e-06 Score=66.72 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=39.1
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCcCC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLCRSPIIAT 225 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~~~ 225 (379)
-|.+|--++. ...|++| |+|+||.+|+..|.++ .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4888877763 4678999 9999999999999854 68999999988643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=75.63 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=41.2
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCC--CCCCcCcCCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNL--TCPLCRSPIIATE 226 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~--~CP~CR~~l~~~~ 226 (379)
...|.||.+-...|..+. .|+|.||..|+..|++.+. .||.|+..+....
T Consensus 180 i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 568999999988765443 3999999999999998754 8999999886653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.07 E-value=0.042 Score=44.20 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=38.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
+-..|..|+-+. +.++ ....|.+|..|+...|.....||+|+.+|..+
T Consensus 27 G~~nCKsCWf~~---k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN---KGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC---SSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhcccc---CCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 567899998776 3332 22469999999999888889999999998765
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.68 E-value=0.093 Score=39.37 Aligned_cols=46 Identities=28% Similarity=0.524 Sum_probs=33.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~~l 222 (379)
.+..|.||.+. ..+..--.|...||..|++..|... =.||.|....
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 56689999643 3344444588999999999877653 2799997653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.71 E-value=0.15 Score=40.50 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=25.5
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW 208 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W 208 (379)
+..|.||++.+.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998753333334477 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.80 E-value=0.89 Score=35.79 Aligned_cols=34 Identities=18% Similarity=0.524 Sum_probs=22.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW 208 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W 208 (379)
.+..|.||- -+..++....-- |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence 678999994 233323222222 8999999999994
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.15 E-value=0.65 Score=41.57 Aligned_cols=49 Identities=22% Similarity=0.446 Sum_probs=34.7
Q ss_pred CCcCccccccccCCCc---eeecCCCCCcccHHHHHHH------Hh-----cCCCCCCcCcCC
Q 037216 174 GGDCAICLFKFEPHDQ---LRLLPLCCHAFHARCIDTW------LE-----SNLTCPLCRSPI 222 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~---~~~Lp~C~H~FH~~Ci~~W------L~-----~~~~CP~CR~~l 222 (379)
+..|+||...|.+++. .+..-.|..-||..|+.-- +. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4579999999987762 4444458889999998531 11 157999998754
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.19 E-value=0.47 Score=42.86 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=32.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~~l 222 (379)
.+..|.+|... ..+.....|...||..|+++-|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 56789999643 3454555588899999998766432 3699998743
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.23 E-value=0.55 Score=41.52 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=32.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~~l 222 (379)
.++.|.||... |+ +.....|...||..|+++-|... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45789999743 34 44444588899999988766532 3699998754
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.90 E-value=0.48 Score=34.68 Aligned_cols=48 Identities=25% Similarity=0.600 Sum_probs=33.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-----cCCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-----SNLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-----~~~~CP~CR~ 220 (379)
++..|+||...+.++...+.--.|..-||..|+..-.. ....||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45679999998865554444445888899999865321 2457999965
No 81
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=74.12 E-value=7.3 Score=26.85 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
+...+..+++. +++++++...+..|++||
T Consensus 10 ~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 10 PLTSIISAVVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp SHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHHHHHHhheehh
Confidence 33444444444 333333333333344444
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.86 E-value=2 Score=31.25 Aligned_cols=44 Identities=27% Similarity=0.687 Sum_probs=30.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~ 220 (379)
.+..|.||... ..+..-..|...||..|++.=|.. .-.||.|+.
T Consensus 10 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 56789999763 344444458889999999875432 226999965
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.02 E-value=2 Score=29.82 Aligned_cols=44 Identities=36% Similarity=0.700 Sum_probs=28.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRS 220 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~ 220 (379)
.|.||...-.. ..+..-..|...||..|++.=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899765332 234444458889999999753432 225999965
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=68.77 E-value=1.3 Score=32.19 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=30.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~~l 222 (379)
.+..|.||.+. ..+..-..|...||..|+..=|.. .-.||.|+...
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 56789999752 334344448889999999864433 22599997643
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=68.43 E-value=3.4 Score=45.61 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCCceeecCCCC-CcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCC-HAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~-H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+|-++-+ ....++| .| +.|-+.+|..||..+.+||.=|.++...
T Consensus 890 ~~F~cPIs~~lM---~DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIM---KDPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBC---SSEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHH---hCCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 567799999998 6677888 77 5799999999999999999999988653
No 86
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=68.04 E-value=3.9 Score=30.22 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.1
Q ss_pred CCCcCccccccccCCCceeecC-CCCCcccHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLP-LCCHAFHARCIDT 207 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp-~C~H~FH~~Ci~~ 207 (379)
....|.+|..++.+++..+.-- .|.--||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 4568999999987766665554 5888899999753
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=65.09 E-value=0.38 Score=34.96 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=31.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~~l~ 223 (379)
.+..|.||... + .+..-..|...||..|++.=|.. .-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 46789999763 3 34344458889999999864432 225999966443
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=64.83 E-value=2 Score=34.76 Aligned_cols=46 Identities=30% Similarity=0.735 Sum_probs=30.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCR 219 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR 219 (379)
+++.|.||.+.=...+.+ .-..|+..||..|++..+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 577999997663222223 33459999999999886642 22577665
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.75 E-value=2.6 Score=33.26 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=31.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~~l 222 (379)
.+..|.||... ++ +..-..|.-.||..|+++=|... -.||.|+..-
T Consensus 24 n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 56789999754 33 33444477889999997755332 2699998643
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.24 E-value=5.7 Score=30.14 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=31.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-----cCCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-----SNLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-----~~~~CP~CR~~ 221 (379)
....| ||...+..+...+.--.|..-||..|+.--.. ....||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 34457 99888754444444444888899999853221 24579999864
No 91
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=63.08 E-value=15 Score=25.20 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 037216 97 IIILILAITVFL 108 (379)
Q Consensus 97 iiiiIL~~~l~v 108 (379)
+...++..++++
T Consensus 12 IA~gVVgGv~~v 23 (44)
T 2l2t_A 12 IAAGVIGGLFIL 23 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeehHHHHHH
Confidence 333344333333
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=61.98 E-value=9.6 Score=32.62 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh-----------cCCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE-----------SNLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~-----------~~~~CP~CR~~ 221 (379)
.++.|.||-+- -.+..--.|-.+||..||+.=|. ..=.||+|+..
T Consensus 62 ~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 57789999653 34444445888999999997542 12369999853
No 93
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.81 E-value=1.9 Score=38.43 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=29.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRSP 221 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~~ 221 (379)
++.|.+|... ++.+ ....|...||..|+++=|.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4689999743 3433 33347889999998763432 2269999875
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=61.70 E-value=2.7 Score=29.47 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=29.2
Q ss_pred cCccccccccCCCceeecC-CCCCcccHHHHHHHH----hcCCCCCCcC
Q 037216 176 DCAICLFKFEPHDQLRLLP-LCCHAFHARCIDTWL----ESNLTCPLCR 219 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp-~C~H~FH~~Ci~~WL----~~~~~CP~CR 219 (379)
.|.+|..++..+...+.-- .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788988886555444443 477779999976321 2456899885
No 95
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=59.69 E-value=2.5 Score=31.70 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=33.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~~l 222 (379)
....|.||..... ++....--.|.-.||..|+..-+.. .-.||.|+..+
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3456999987753 3444444458888999998764432 34699997654
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=58.13 E-value=2.5 Score=34.44 Aligned_cols=45 Identities=27% Similarity=0.580 Sum_probs=29.4
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRS 220 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~ 220 (379)
.|.||...-.+.+.+..-..|...||..|+++=|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888876422223444444588999999987655432 26999974
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.50 E-value=2.3 Score=36.97 Aligned_cols=47 Identities=23% Similarity=0.471 Sum_probs=31.7
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHH-----hcCCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL-----ESNLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL-----~~~~~CP~CR~ 220 (379)
....| ||......+......-.|...||..|+..-. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45579 9998875444444444588889999985321 12457999975
No 98
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.01 E-value=12 Score=31.40 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=31.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHH------hc-----CCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL------ES-----NLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL------~~-----~~~CP~CR~~ 221 (379)
.+..|.||-+- .++..-..|-.+||..||+.-+ .. .=.|++|+..
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 56789999654 4444444588999999999742 11 2379999654
No 99
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.24 E-value=1.1 Score=31.93 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=29.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESN----LTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~----~~CP~CR~ 220 (379)
.+..|.||... + .+..-..|...||..|++.=|... -.||.|..
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 56789999764 3 343444588899999988644322 25887753
No 100
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.11 E-value=29 Score=24.87 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRH 118 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~ 118 (379)
+.+++++.+++.++++.++..++.++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666666666655555555444443
No 101
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=54.49 E-value=24 Score=25.26 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 93 PSLIIIILILAITVFLSISLCLLLRH 118 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~r~ 118 (379)
+.+++++.+++.++++.++..++.++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666666666665555555554443
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.43 E-value=19 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=29.8
Q ss_pred CCCcCccccccc-----cCCCceeecCCCCCcccHHHHHHH------Hhc-CCCCCCcCc
Q 037216 173 SGGDCAICLFKF-----EPHDQLRLLPLCCHAFHARCIDTW------LES-NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~-----~~~~~~~~Lp~C~H~FH~~Ci~~W------L~~-~~~CP~CR~ 220 (379)
....|.+|+..- ..++++..-..|+..||..|+..+ +.. .-.||.|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 356899998753 122344444459999999999531 222 336777753
No 103
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=53.05 E-value=17 Score=27.24 Aligned_cols=17 Identities=18% Similarity=0.000 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037216 101 ILAITVFLSISLCLLLR 117 (379)
Q Consensus 101 IL~~~l~v~i~l~~l~r 117 (379)
+|+.++.++++..+.+.
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 44444443334444444
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.54 E-value=7.7 Score=31.26 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCcCccccccccCCCceeecC-CCCCcccHHHHHHHHh----------cCCCCCCcCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLP-LCCHAFHARCIDTWLE----------SNLTCPLCRSP 221 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp-~C~H~FH~~Ci~~WL~----------~~~~CP~CR~~ 221 (379)
...|.||..++.+....+.-- .|..-||..|+.-=-. ....||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 467999999986655544443 4777899999863210 34579999864
No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.28 E-value=2.2 Score=32.66 Aligned_cols=46 Identities=28% Similarity=0.598 Sum_probs=29.5
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRS 220 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~ 220 (379)
+..|.||...-. +..+.+--.|...||..|+++=|.. .=.||.|..
T Consensus 26 ~c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 347888876422 2344444458889999999853332 125998865
No 106
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.89 E-value=3.2 Score=40.80 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-------CCCCCCcCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-------NLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-------~~~CP~CR~~l 222 (379)
....|.+|...|..-..-.....||++||..|....+.. ...|-.|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346899999998643321222249999999999776521 34677776544
No 107
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=50.24 E-value=2.1 Score=31.59 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=30.1
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~ 220 (379)
.+..|.||... + .+..-..|...||..|+..=|.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 56789999753 3 34444458889999998864432 225999965
No 108
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=48.89 E-value=12 Score=27.84 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHH
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCID 206 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~ 206 (379)
+..|.+|...|..-..-.--..||++|+..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 458999999996543222222499999999964
No 109
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=46.67 E-value=9.6 Score=27.59 Aligned_cols=49 Identities=20% Similarity=0.582 Sum_probs=32.9
Q ss_pred CCCcCccccccccC-CCceeecCCCCCcccHHHHHHHHh-------cCCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEP-HDQLRLLPLCCHAFHARCIDTWLE-------SNLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~-~~~~~~Lp~C~H~FH~~Ci~~WL~-------~~~~CP~CR~~ 221 (379)
.+..|.||...... +..+.+-..|.-.||..|+..=|. ..-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 56789999876532 234555556888999999886331 12368888654
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.56 E-value=11 Score=29.48 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=25.3
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHH
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL 209 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL 209 (379)
...|.+|...|..-..-..-..||++||..|...++
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999999996543222233499999999976643
No 111
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.40 E-value=10 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHH
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT 207 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~ 207 (379)
...|.+|...|..-..-..-..||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3589999999964432222224999999999554
No 112
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=45.54 E-value=2.9 Score=31.30 Aligned_cols=44 Identities=34% Similarity=0.674 Sum_probs=27.0
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRS 220 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~ 220 (379)
.|.||...-. +..+..--.|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667764322 2344444458889999999853432 226999875
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.91 E-value=2.4 Score=35.37 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~ 221 (379)
....|..|-..|..-..-.....||.+||..|..........|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3458999999996433212222499999999977765556778888553
No 114
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.80 E-value=9.2 Score=34.49 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=24.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT 207 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~ 207 (379)
.+..|.+|...|..-..-.-...||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46799999999964432222224999999999554
No 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.40 E-value=8.2 Score=28.94 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=29.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHH---------hcCCCCCCcCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWL---------ESNLTCPLCRSP 221 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL---------~~~~~CP~CR~~ 221 (379)
...| ||...+..+. .+.--.|..-||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3457 8988775333 33333488889999985311 246789999753
No 116
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=44.20 E-value=6.4 Score=31.29 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=28.9
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc---CCCCCCcCcC
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES---NLTCPLCRSP 221 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~---~~~CP~CR~~ 221 (379)
..| ||-.....+. ++.--.|.-.||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 357 7876654443 3344458889999998652221 2479999753
No 117
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.97 E-value=9.8 Score=34.64 Aligned_cols=36 Identities=17% Similarity=0.491 Sum_probs=25.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTW 208 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~W 208 (379)
.+..|.+|...|..-..-.....||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999999754322222349999999996643
No 118
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.77 E-value=18 Score=26.38 Aligned_cols=42 Identities=19% Similarity=0.527 Sum_probs=30.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+-|-+.+...+.+... -+..||.+| .+|-.|..+|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 456899999988754444222 577899888 468889887754
No 119
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.44 E-value=15 Score=28.07 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT 207 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~ 207 (379)
....|.+|-..|..-..-.--..||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45689999999965432222224999999999655
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.75 E-value=58 Score=25.75 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=34.4
Q ss_pred CCCcCccccccccCCC--ce-eecCCCCCcccHHHHHHHHhc-CCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHD--QL-RLLPLCCHAFHARCIDTWLES-NLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~--~~-~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~CR~~l~ 223 (379)
....|.||-+++.... .+ .-...|+.-.|+.|.+-=.+. ++.||-|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4579999999864332 12 111227777899998864433 678999988764
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.11 E-value=16 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT 207 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~ 207 (379)
....|.+|...|.....-.--..||++||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999975432222224999999999654
No 122
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.84 E-value=2.5 Score=33.39 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=30.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~ 220 (379)
....|.||...-.. ..+..--.|...||..|+++=|.. .=.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45679999876422 234444458889999998743332 225999965
No 123
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=40.75 E-value=4.4 Score=37.41 Aligned_cols=45 Identities=33% Similarity=0.645 Sum_probs=25.6
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCCcCc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-----NLTCPLCRS 220 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-----~~~CP~CR~ 220 (379)
..|.+|...-. +..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35888865422 2334444458889999999853432 125999975
No 124
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.70 E-value=16 Score=28.40 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDT 207 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~ 207 (379)
....|.+|...|..-..----..||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34589999999965432222224999999999654
No 125
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.69 E-value=29 Score=25.85 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCCcCccccccc-cCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCc
Q 037216 173 SGGDCAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~-~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~ 220 (379)
.+..|.||.+.- ..++.+..--.|.-.||..|+..=..- .=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 567899998653 233455555568889999998752211 125888854
No 126
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=39.32 E-value=11 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~rr 122 (379)
..++..++. +++++++...+..|++||
T Consensus 8 ~sIaagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 8 TFIIATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred cEeHHHHHH-HHHHHHHHHHhheEEeec
Confidence 334444444 333333333333444443
No 127
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.15 E-value=30 Score=26.12 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|..|-+.+.. +. +. .-+..||.+| .+|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VK-ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EE-SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EE-ECCceECccC--------CEecCCCCCCCC
Confidence 34689999998864 22 22 2678999988 468899988764
No 128
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.55 E-value=18 Score=29.21 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=28.1
Q ss_pred CcCccccccccC------CCceeecCCCCCcccHHHHHHHHh------c-CCCCCCcC
Q 037216 175 GDCAICLFKFEP------HDQLRLLPLCCHAFHARCIDTWLE------S-NLTCPLCR 219 (379)
Q Consensus 175 ~~C~ICl~~~~~------~~~~~~Lp~C~H~FH~~Ci~~WL~------~-~~~CP~CR 219 (379)
+.|.||+..-.. ++.+..-..|+..||..|++..+. . .=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 479999875421 223444444999999999986531 1 23577764
No 129
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.82 E-value=24 Score=25.24 Aligned_cols=41 Identities=22% Similarity=0.530 Sum_probs=29.3
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
...|..|-+.+..++.+ +.. -+..||.+| .+|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEY-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECS-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEE-CccccCccc--------CeECCCCCcCCC
Confidence 45899999988754333 222 678999988 468889887754
No 130
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.79 E-value=32 Score=25.65 Aligned_cols=42 Identities=26% Similarity=0.571 Sum_probs=31.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+.|-..+...+.+. . -+..||.+| .+|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 4568999999886655553 2 578899998 4688898887544
No 131
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.41 E-value=19 Score=27.45 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=22.8
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCID 206 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~ 206 (379)
....|.+|..+|..-..-----.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3458999999996433211222499999998843
No 132
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=37.35 E-value=4.2 Score=31.15 Aligned_cols=44 Identities=36% Similarity=0.750 Sum_probs=26.6
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc----C-CCCCCcCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----N-LTCPLCRS 220 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~-~~CP~CR~ 220 (379)
.|.||...-.. ..+..--.|...||..|+++-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666544322 233344448889999999865543 1 36999975
No 133
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=37.22 E-value=28 Score=26.99 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCCcCccccccc-cCCCceeecCCCCCcccHHHHHHHHhc--CCCCCCcCcCC
Q 037216 173 SGGDCAICLFKF-EPHDQLRLLPLCCHAFHARCIDTWLES--NLTCPLCRSPI 222 (379)
Q Consensus 173 ~~~~C~ICl~~~-~~~~~~~~Lp~C~H~FH~~Ci~~WL~~--~~~CP~CR~~l 222 (379)
.+..|.||...- ...+.+..-..|.-.||..|+..=+.- .=.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 567899998653 222345555558888999998753211 22699996643
No 134
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.87 E-value=38 Score=25.93 Aligned_cols=22 Identities=5% Similarity=0.481 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037216 96 IIIILILAITVFLSISLCLLLR 117 (379)
Q Consensus 96 ~iiiiIL~~~l~v~i~l~~l~r 117 (379)
.+++.+++.++++.++++++.+
T Consensus 12 ~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 135
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.83 E-value=52 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=27.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES 211 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~ 211 (379)
..-.|.+|.+.+++..-+..-..-.|.||..|-+..++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 455899999998654444221113689999999999875
No 136
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.70 E-value=47 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 037216 93 PSLIIIILILAITVFLSISLCLLL 116 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l~~l~ 116 (379)
+.+++++.+++..+++.++...+.
T Consensus 9 p~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666655555544444443
No 137
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.58 E-value=25 Score=25.18 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=29.3
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
...|+.|-+.+...+.+.. . -+..||.+| .+|-.|..+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME-Y-KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE-E-TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEE-E-CcCeecccC--------CcccccCCccCCC
Confidence 3589999998876543322 2 567899888 4688898877543
No 138
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.56 E-value=19 Score=28.43 Aligned_cols=44 Identities=23% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCCcCccccccccCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPL--CC-HAFHARCIDTWLES----NLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~--C~-H~FH~~Ci~~WL~~----~~~CP~CR~~ 221 (379)
...-| ||..... + .++.--. |. .-||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34457 9987642 3 3333333 44 579999987 333 3479999764
No 139
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.43 E-value=8.4 Score=31.38 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=17.1
Q ss_pred CCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 196 CCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 196 C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
||+.|. +. +.....||.|+......
T Consensus 73 CG~~F~----~~-~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 73 CGFVFK----AE-INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TCCBCC----CC-SSCCSSCSSSCCCCBCC
T ss_pred CcCeec----cc-CCCCCCCcCCCCCccCC
Confidence 888881 11 23356899999976654
No 140
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.10 E-value=32 Score=25.32 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=30.7
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
...|+.|-+.+..++.+. .. -+..||.+| .+|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EY-KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-EC-SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EE-Ccccccccc--------CchhhCCCccCCC
Confidence 468999999987655532 22 678899988 4788998887543
No 141
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.00 E-value=17 Score=29.46 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=29.8
Q ss_pred CCCcCccccccccCCCceeecC--CCCCcccHHHHHHHHhcC----CCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLP--LCCHAFHARCIDTWLESN----LTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp--~C~H~FH~~Ci~~WL~~~----~~CP~CR~~l~~ 224 (379)
.++.|.+|.+ . .++..-- .|-..||..|+. |... -.||.|+-.+-.
T Consensus 14 ~~~~C~~C~~---~-G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 14 HEDYCFQCGD---G-GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SCSSCTTTCC---C-SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCcCCC---C-CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 5678999973 2 3343333 377899999998 5432 258887655443
No 142
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.40 E-value=15 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=20.3
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHH
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCI 205 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci 205 (379)
..|+.|-..+-..+.+. .-|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 47999988876555443 26788999884
No 143
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.03 E-value=19 Score=30.32 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCcCcccccccc-CCCceeecCCCCCcccHHHHH
Q 037216 173 SGGDCAICLFKFE-PHDQLRLLPLCCHAFHARCID 206 (379)
Q Consensus 173 ~~~~C~ICl~~~~-~~~~~~~Lp~C~H~FH~~Ci~ 206 (379)
....|.+|..+|. ....-+.-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5678999999994 222223444599999988854
No 144
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.65 E-value=18 Score=25.68 Aligned_cols=42 Identities=19% Similarity=0.539 Sum_probs=30.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+-|-..+..++.+.. . -+..||..|+ +|-.|..+|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCCC
Confidence 35689999999876654422 2 5778999884 68889887754
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.57 E-value=30 Score=24.76 Aligned_cols=40 Identities=20% Similarity=0.486 Sum_probs=27.2
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|+.|-+.+...+.. +.. -+..||.+| .+|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVA-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EEC-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEE-CCCeEcccC--------CcccccCCcCC
Confidence 45799998877653322 222 568888887 46888888774
No 146
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.45 E-value=26 Score=26.11 Aligned_cols=44 Identities=23% Similarity=0.488 Sum_probs=27.5
Q ss_pred CCCcCccccccccCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCCCcCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPL--CC-HAFHARCIDTWLES----NLTCPLCRSP 221 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~--C~-H~FH~~Ci~~WL~~----~~~CP~CR~~ 221 (379)
...-| ||-.... + .++.--. |. ..||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8977642 3 3333333 55 579999997 333 3369999764
No 147
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.20 E-value=19 Score=26.16 Aligned_cols=42 Identities=21% Similarity=0.585 Sum_probs=29.6
Q ss_pred CcCccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCCCc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES-NLTCPLC 218 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~-~~~CP~C 218 (379)
..|--|...|... ..-.-++|++.|+.+| |..+.. -.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999998532 2234667999999999 554432 3589988
No 148
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.34 E-value=33 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
....|+-|-+.+..++.+.. -+..||.+| .+|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45689999998876665543 567899988 47889988775
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.11 E-value=33 Score=24.58 Aligned_cols=40 Identities=18% Similarity=0.460 Sum_probs=28.8
Q ss_pred CCcCccccccccC--CCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEP--HDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~--~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|+-|-+.+.. .+.+ +.. -+..||.+| .+|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISF-EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EEC-SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEE-CCcccCccc--------CEeccCCCcCC
Confidence 4589999998874 2232 222 678999988 47889988875
No 150
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.93 E-value=26 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.464 Sum_probs=30.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
...|+.|-+.+..++.+. . -+..||.+| .+|-.|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCC--------CCCCCCCCccCC
Confidence 468999999987666543 2 678899988 469999988764
No 151
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.74 E-value=20 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.513 Sum_probs=18.1
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
.|+.|-+.+..++.+. . -+..||.+| .+|-.|+.+|.
T Consensus 2 ~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVT--S-LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEE--E-TTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEE--E-CCccccCCC--------CCccccCccCC
Confidence 3555655554333322 1 345566555 24555655554
No 152
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.74 E-value=28 Score=28.04 Aligned_cols=37 Identities=19% Similarity=0.496 Sum_probs=25.3
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPI 222 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l 222 (379)
.|+.|-..+...+.+. . .-++.||..| .+|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~-~-a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-R-VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCC-C-CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEE-E-ECCccccccc--------CccccCCCCC
Confidence 7899988876544332 1 2578888888 3577787777
No 153
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.47 E-value=21 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.922 Sum_probs=11.2
Q ss_pred cccHHHHHHHHhc
Q 037216 199 AFHARCIDTWLES 211 (379)
Q Consensus 199 ~FH~~Ci~~WL~~ 211 (379)
.||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999953
No 154
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.16 E-value=21 Score=28.70 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q 037216 199 AFHARCIDTWLE 210 (379)
Q Consensus 199 ~FH~~Ci~~WL~ 210 (379)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999996
No 155
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.97 E-value=51 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 037216 102 LAITVFLSISLCLLLRHLNR 121 (379)
Q Consensus 102 L~~~l~v~i~l~~l~r~~~r 121 (379)
+++++++.+.+++++|..++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhhhHh
Confidence 33333344444455554443
No 156
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.62 E-value=18 Score=28.01 Aligned_cols=49 Identities=20% Similarity=0.441 Sum_probs=33.2
Q ss_pred CCcCccccccccC-CCceeecCCCCCcccHHHHHHHHhc--------CCCCCCcCcCC
Q 037216 174 GGDCAICLFKFEP-HDQLRLLPLCCHAFHARCIDTWLES--------NLTCPLCRSPI 222 (379)
Q Consensus 174 ~~~C~ICl~~~~~-~~~~~~Lp~C~H~FH~~Ci~~WL~~--------~~~CP~CR~~l 222 (379)
+..|.||...-.. +..+.+--.|...||..|++.=|.. .=.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 5689999876432 2345555568899999999865431 23699996643
No 157
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=28.50 E-value=41 Score=33.15 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=30.4
Q ss_pred CcCccccccccCCCceeecCCCCCc--ccHHHHHHHHhc--CCCCCCcCcCCcCCc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHA--FHARCIDTWLES--NLTCPLCRSPIIATE 226 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~--FH~~Ci~~WL~~--~~~CP~CR~~l~~~~ 226 (379)
-.|+|-+..+. .-+|-.. |.|. |-..=+.....+ .-.||+|...+...+
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 46998877774 3456665 9998 444333332222 347999988776543
No 158
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.46 E-value=45 Score=24.20 Aligned_cols=40 Identities=15% Similarity=0.497 Sum_probs=28.9
Q ss_pred CCcCccccccccC--CCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEP--HDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~--~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|+.|-+.+.. .... +.. -+..||.+| .+|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEE-CCcccCccc--------CChhhCCCcCC
Confidence 4589999998874 2233 222 678899998 47889988875
No 159
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.37 E-value=40 Score=33.36 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=31.0
Q ss_pred CCCcCccccccccCCCceeecC--CCCCcccHHHHHHHHhc----------CCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLP--LCCHAFHARCIDTWLES----------NLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp--~C~H~FH~~Ci~~WL~~----------~~~CP~CR~ 220 (379)
.+..|.+|-+. .++.... .|...||.+||+..+-. .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 46689999653 3444444 58899999999998821 236888854
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=26.07 E-value=49 Score=32.44 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=31.1
Q ss_pred CcCccccccccCCCceeecCCCCCc--ccHHHHHHHHhc--CCCCCCcCcCCcCCc
Q 037216 175 GDCAICLFKFEPHDQLRLLPLCCHA--FHARCIDTWLES--NLTCPLCRSPIIATE 226 (379)
Q Consensus 175 ~~C~ICl~~~~~~~~~~~Lp~C~H~--FH~~Ci~~WL~~--~~~CP~CR~~l~~~~ 226 (379)
-.|+|-+..+. .-+|-.. |.|. |-..=+.....+ .-.||+|...+..++
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 46998877773 3456665 9998 554433333222 247999999876543
No 161
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.93 E-value=1.1e+02 Score=20.60 Aligned_cols=25 Identities=8% Similarity=0.414 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 96 IIIILILAITVFLSISLCLLLRHLN 120 (379)
Q Consensus 96 ~iiiiIL~~~l~v~i~l~~l~r~~~ 120 (379)
.++..+++.++++-+++.++.+++.
T Consensus 11 ~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 11 VVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555443
No 162
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.91 E-value=43 Score=25.26 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+.|-+.+. ++.+ .. -+..||.+| .+|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VA-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EE-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EE-CCccccccC--------CccCCCCCCCCC
Confidence 4568999999884 3332 23 678899988 478899888764
No 163
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.46 E-value=63 Score=23.76 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=29.6
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcCC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~~ 225 (379)
....|+-|-..+. ++.+ . .-+..||.+| .+|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCCC
Confidence 4568999999886 3333 2 2678899888 4799999887643
No 164
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.20 E-value=40 Score=25.14 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=24.0
Q ss_pred CCCcCccccccccCCCceeecCCC-CCcccHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLC-CHAFHARCIDT 207 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C-~H~FH~~Ci~~ 207 (379)
+..-|.||.++ ..++.+- | |-+||..|...
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 45679999887 5688886 8 77899999666
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.04 E-value=30 Score=29.76 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=29.5
Q ss_pred CCCcCccccccccC--CCceeecCCCCCcccHHHHHHHHhcCC--CCCCcCc
Q 037216 173 SGGDCAICLFKFEP--HDQLRLLPLCCHAFHARCIDTWLESNL--TCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~--~~~~~~Lp~C~H~FH~~Ci~~WL~~~~--~CP~CR~ 220 (379)
.+..|++|..+|.. +...... .|.|.+|..|-. |+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 46799999998742 2233333 499999999962 333221 4777754
No 166
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.01 E-value=8 Score=31.02 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=27.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCCCcCcC
Q 037216 176 DCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLES----NLTCPLCRSP 221 (379)
Q Consensus 176 ~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~----~~~CP~CR~~ 221 (379)
.|.||...-.. +.+..-..|...||..|+++=|.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46677554322 234444458889999999864432 2258888653
No 167
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.49 E-value=12 Score=27.74 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=29.0
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCCCcCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLE---SNLTCPLCRS 220 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~---~~~~CP~CR~ 220 (379)
....| ||-.... +...+.--.|..-||..|+.---. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45578 9987764 333333334888899999864211 2346888864
No 168
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.49 E-value=16 Score=27.31 Aligned_cols=20 Identities=40% Similarity=0.871 Sum_probs=15.2
Q ss_pred HHHHhcCCCCCCcCcCCcCC
Q 037216 206 DTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 206 ~~WL~~~~~CP~CR~~l~~~ 225 (379)
+.||...-.||.|+.++...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 55677777999999988754
No 169
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.44 E-value=55 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.623 Sum_probs=24.3
Q ss_pred CCCcCccccccccCCCceeecC--CCCCcccHHHHHHHH
Q 037216 173 SGGDCAICLFKFEPHDQLRLLP--LCCHAFHARCIDTWL 209 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp--~C~H~FH~~Ci~~WL 209 (379)
.+..|.||-+. ..+..-. .|...||.+||+.++
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhc
Confidence 46679999653 4454443 488899999999977
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.89 E-value=66 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=12.9
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 037216 94 SLIIIILILAI-TVFLSISLCLLLRHLNRR 122 (379)
Q Consensus 94 ~i~iiiiIL~~-~l~v~i~l~~l~r~~~rr 122 (379)
.+++++.-++. ++|+.+.+++..+++.|+
T Consensus 9 ~~LivlGg~~~lll~~glcI~ccvkcrhRr 38 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLGIFFSVRSRHRR 38 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34344444444 444444444455555443
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.31 E-value=52 Score=24.08 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=28.4
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
....|+-|-+.+.. +. +.- -+..||.+| .+|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VKL-RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EEC-SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccC-cE--EEE-CcceeCcCc--------CeeCCCCCCCC
Confidence 34689999998864 22 232 678999988 36889988774
No 172
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=28.22 E-value=18 Score=24.18 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037216 95 LIIIILILAITVFLSISLCLLLRHLNR 121 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~~~r 121 (379)
+.++..+++.++++++++.+++..+++
T Consensus 8 ~~vl~avlal~vi~iisLIiLi~~w~q 34 (39)
T 2l6w_A 8 VVVISAILALVVLTIISLIILIMLWQK 34 (39)
Confidence 444555555555555555555554443
No 173
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.43 E-value=69 Score=21.87 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=8.6
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 037216 93 PSLIIIILILAITVFLSISL 112 (379)
Q Consensus 93 ~~i~iiiiIL~~~l~v~i~l 112 (379)
....-++.-+++++++.+..
T Consensus 11 aIA~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTF 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHH
Confidence 34444554334444444333
No 174
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.15 E-value=54 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=27.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCc
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPII 223 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~ 223 (379)
...|+-|-..+.. +. +..-+..||.+| .+|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~---v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RV---LEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CC---BCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-ee---EEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 3579999888753 22 223778899988 47888988876
No 175
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.78 E-value=14 Score=27.49 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=15.7
Q ss_pred HHHHhcCCCCCCcCcCCcCC
Q 037216 206 DTWLESNLTCPLCRSPIIAT 225 (379)
Q Consensus 206 ~~WL~~~~~CP~CR~~l~~~ 225 (379)
+.||...-.||+|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 45677777999999988654
No 176
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=70 Score=23.40 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=28.6
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
...|+.|-..+..++.+. ..-+..||.+| ..|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL--FYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC--CCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEE--EeCCccccccC--------CeecCCCCccCC
Confidence 457999999887433332 22578899988 468889888753
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.04 E-value=49 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=28.4
Q ss_pred CCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 174 GGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 174 ~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
...|+.|-+.+. ++. +.. -+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCC
Confidence 457999999886 332 233 678899988 468899888754
No 178
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.98 E-value=61 Score=24.41 Aligned_cols=41 Identities=24% Similarity=0.629 Sum_probs=29.9
Q ss_pred CCCcCccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCCCcCcCCcC
Q 037216 173 SGGDCAICLFKFEPHDQLRLLPLCCHAFHARCIDTWLESNLTCPLCRSPIIA 224 (379)
Q Consensus 173 ~~~~C~ICl~~~~~~~~~~~Lp~C~H~FH~~Ci~~WL~~~~~CP~CR~~l~~ 224 (379)
....|+-|-+.+...+.+ .. -+..||.+| .+|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LA-NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--EC-SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeE--EE-CCCEECCCC--------CeeCCCCCCCCC
Confidence 356899999988765544 23 678899988 368888887754
No 179
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.32 E-value=1e+02 Score=23.20 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 037216 95 LIIIILILAITVFLSISLCLLLRH 118 (379)
Q Consensus 95 i~iiiiIL~~~l~v~i~l~~l~r~ 118 (379)
+-+.=+|++.++|++.+++++-..
T Consensus 16 LRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 16 LQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHcCc
Confidence 334444444444444444444433
Done!