Query 037219
Match_columns 109
No_of_seqs 24 out of 26
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 09:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 90.9 0.089 1.9E-06 44.8 0.7 16 47-62 303-331 (331)
2 KOG2730 Methylase [General fun 87.2 0.42 9.1E-06 39.7 2.1 32 41-72 140-180 (263)
3 PHA02774 E1; Provisional 76.5 2.3 5.1E-05 38.8 2.9 41 25-65 162-221 (613)
4 PF04876 Tenui_NCP: Tenuivirus 62.7 6.5 0.00014 31.1 2.3 27 47-73 112-155 (175)
5 TIGR00562 proto_IX_ox protopor 59.0 15 0.00032 29.6 3.9 20 24-43 370-390 (462)
6 PF06883 RNA_pol_Rpa2_4: RNA p 54.9 4.9 0.00011 26.0 0.4 37 53-95 7-48 (58)
7 COG4321 Uncharacterized protei 54.4 5.9 0.00013 29.0 0.8 11 45-55 72-82 (102)
8 PF08933 DUF1864: Domain of un 52.3 13 0.00027 32.7 2.6 73 25-99 148-243 (387)
9 TIGR02435 CobG precorrin-3B sy 45.0 28 0.00061 28.8 3.5 26 53-78 109-137 (390)
10 PF11294 DUF3095: Protein of u 44.9 47 0.001 28.8 4.8 66 20-85 81-184 (373)
11 PLN02576 protoporphyrinogen ox 43.7 20 0.00042 29.5 2.3 18 47-64 459-489 (496)
12 COG0172 SerS Seryl-tRNA synthe 41.7 20 0.00044 31.4 2.3 24 23-46 294-321 (429)
13 cd08782 Death_DAPK1 Death doma 41.0 15 0.00032 24.9 1.1 17 48-64 17-39 (82)
14 cd07397 MPP_DevT Myxococcus xa 40.2 14 0.00031 29.6 1.0 15 47-61 167-191 (238)
15 PF15295 CCDC50_N: Coiled-coil 39.9 20 0.00044 27.1 1.7 13 47-59 17-34 (132)
16 TIGR03124 ctirate_citX holo-AC 35.1 28 0.0006 26.6 1.8 15 25-39 88-102 (165)
17 PF11390 FdsD: NADH-dependant 34.9 25 0.00054 23.1 1.4 13 53-65 4-16 (61)
18 PRK09190 hypothetical protein; 32.9 56 0.0012 26.0 3.3 43 7-50 70-116 (220)
19 PF01964 ThiC: ThiC family; I 31.2 56 0.0012 29.0 3.3 23 17-39 326-348 (420)
20 PF01841 Transglut_core: Trans 29.2 32 0.0007 22.1 1.2 20 32-51 59-79 (113)
21 smart00460 TGc Transglutaminas 28.4 37 0.00081 20.1 1.3 15 36-50 19-33 (68)
22 COG3565 Predicted dioxygenase 26.0 45 0.00097 25.6 1.6 13 48-60 79-91 (138)
23 PF15463 ECM11: Extracellular 25.5 55 0.0012 23.8 1.9 6 47-52 76-81 (139)
24 PF03802 CitX: Apo-citrate lya 23.7 57 0.0012 24.7 1.8 15 25-39 90-104 (170)
25 PF06200 tify: tify domain; I 23.4 67 0.0015 19.2 1.7 13 19-31 20-32 (36)
26 COG2221 DsrA Dissimilatory sul 21.9 1.2E+02 0.0027 25.8 3.6 54 20-78 74-146 (317)
27 PF10686 DUF2493: Protein of u 21.8 32 0.0007 22.6 0.1 17 8-24 50-66 (71)
28 cd08312 Death_MyD88 Death doma 21.6 49 0.0011 21.9 1.0 12 47-58 15-26 (79)
29 KOG3259 Peptidyl-prolyl cis-tr 21.4 92 0.002 24.5 2.6 55 53-107 87-141 (163)
30 TIGR01658 EYA-cons_domain eyes 20.8 66 0.0014 27.2 1.8 69 10-95 196-270 (274)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=90.90 E-value=0.089 Score=44.77 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=14.1
Q ss_pred hhhhHH-------------HHHHHHHHHh
Q 037219 47 CCLKWL-------------ALAEHIVAYL 62 (109)
Q Consensus 47 iCGDWl-------------ALA~~Ia~y~ 62 (109)
+||||| |+|+||..++
T Consensus 303 ~cGDwc~GgrVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 303 ACGDWCAGGRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred eecccccCcchhHHHhccHHHHHHHHhcC
Confidence 999999 8999998753
No 2
>KOG2730 consensus Methylase [General function prediction only]
Probab=87.24 E-value=0.42 Score=39.70 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=20.4
Q ss_pred cccchh--hhhhHHHHHHHHHHH-------hccCCCCchhh
Q 037219 41 GFKFRV--CCLKWLALAEHIVAY-------LGSHGVCSEEF 72 (109)
Q Consensus 41 gl~tRv--iCGDWlALA~~Ia~y-------~~s~~~~~eef 72 (109)
|++.|| ||||||-|+-.+..- |.|+++..+..
T Consensus 140 GI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 140 GVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred cCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence 455577 999999777665432 55665555443
No 3
>PHA02774 E1; Provisional
Probab=76.53 E-value=2.3 Score=38.81 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=33.0
Q ss_pred hHHHHHHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219 25 TAEKVKTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH 65 (109)
Q Consensus 25 ~AekV~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~ 65 (109)
++...++.||+ |+.+.|++ ||. +|.||+ .|++.+...++.+
T Consensus 162 ~~~n~~a~~l~kFKe~fgvsf~eLtR~FKSdKTcc~dWVv~v~gv~~~~~ea~k~lLq~~ 221 (613)
T PHA02774 162 RSSNRRATLLAKFKEAFGVSFTELTRPFKSDKTCCNDWVVAVFGVSEELLEASKTLLQQH 221 (613)
T ss_pred hcchHHHHHHHHHHHHhcccHHHheecccCCCccchhheEEEEecCHHHHHHHHHHHHhh
Confidence 56678899999 99999998 665 999999 7777777766544
No 4
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=62.70 E-value=6.5 Score=31.08 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=22.7
Q ss_pred hhhhHH-----------------HHHHHHHHHhccCCCCchhhh
Q 037219 47 CCLKWL-----------------ALAEHIVAYLGSHGVCSEEFD 73 (109)
Q Consensus 47 iCGDWl-----------------ALA~~Ia~y~~s~~~~~eefa 73 (109)
-||||. .|-+.|-+.+.+-+.+.|+..
T Consensus 112 ~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye 155 (175)
T PF04876_consen 112 KLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYE 155 (175)
T ss_pred HhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCchHHHH
Confidence 799999 899999999988777777654
No 5
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=58.98 E-value=15 Score=29.57 Aligned_cols=20 Identities=0% Similarity=0.069 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHH-HHHHhccc
Q 037219 24 ATAEKVKTGLVY-VVMAVGFK 43 (109)
Q Consensus 24 ~~AekV~~~Ml~-ve~ALgl~ 43 (109)
...+++.+.+++ +...+|++
T Consensus 370 ~~~ee~~~~v~~~L~~~~gi~ 390 (462)
T TIGR00562 370 LSENEIINIVLRDLKKVLNIN 390 (462)
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 345677777777 77777655
No 6
>PF06883 RNA_pol_Rpa2_4: RNA polymerase I, Rpa2 specific domain ; InterPro: IPR009674 This domain is found between domain 3 and domain 5, but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=54.86 E-value=4.9 Score=26.04 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHHhccCCC-----CchhhhcccCCcccCCCcCCCCCCCCCC
Q 037219 53 ALAEHIVAYLGSHGV-----CSEEFDVGLQTNILPLKGHDIGQFLGLE 95 (109)
Q Consensus 53 ALA~~Ia~y~~s~~~-----~~eefa~GL~~~~~p~~G~dIGqFPG~~ 95 (109)
..|.+|++.++.--. -|....| .|.|.. --|||||+-
T Consensus 7 ~~a~~~~~~LR~~Kv~~~~~vP~~lEI----~~VP~~--~~g~yPGLy 48 (58)
T PF06883_consen 7 EEAEQIADQLRYLKVEGEHGVPPTLEI----GYVPPS--KGGQYPGLY 48 (58)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEE----EEEECC--CCCCCCeEE
Confidence 566777776643322 2222233 455555 339999974
No 7
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=54.44 E-value=5.9 Score=29.04 Aligned_cols=11 Identities=73% Similarity=1.784 Sum_probs=9.5
Q ss_pred hhhhhhHHHHH
Q 037219 45 RVCCLKWLALA 55 (109)
Q Consensus 45 RviCGDWlALA 55 (109)
||+|++||++-
T Consensus 72 RV~clr~L~~~ 82 (102)
T COG4321 72 RVCCLRWLKLR 82 (102)
T ss_pred HHHHHHHHHHh
Confidence 99999999653
No 8
>PF08933 DUF1864: Domain of unknown function (DUF1864); InterPro: IPR015029 This protein has no known function. It is found in various hypothetical and conserved domain proteins. ; PDB: 2NWB_A 1ZEE_B 2X66_A 2V7L_A 2V7M_A 2V7K_A 2X67_A 2X68_A 2V7J_A 2V7I_A.
Probab=52.30 E-value=13 Score=32.66 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHhccc--------chhhhhhHH-H-------HHHHHHHHhccCCCCchhhhcccCCcccCCC----
Q 037219 25 TAEKVKTGLVYVVMAVGFK--------FRVCCLKWL-A-------LAEHIVAYLGSHGVCSEEFDVGLQTNILPLK---- 84 (109)
Q Consensus 25 ~AekV~~~Ml~ve~ALgl~--------tRviCGDWl-A-------LA~~Ia~y~~s~~~~~eefa~GL~~~~~p~~---- 84 (109)
.-+-|+..|++++.|+-.- +-.+++|=| + +-+.|...| ...+|+.|.--+..=|+|..
T Consensus 148 flD~nt~~ila~~~Aad~l~~i~~L~~~~P~~a~ll~~a~~~L~~vv~s~~~l~--~~ldp~~Ff~~vRPYykP~rVG~~ 225 (387)
T PF08933_consen 148 FLDYNTRGILALKRAADALLRIAPLGLSHPAFADLLDEAAQALEDVVESNDYLF--RRLDPERFFYCVRPYYKPYRVGGR 225 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT-TTSCHHHHHHHHHHHHHHHHHHHHHHHH--CCS-HHHHHHHTGGGC--EEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHhcccccceeeCCe
Confidence 4578999999977774222 222888888 3 344455556 46799999999999888865
Q ss_pred ---cCCCCCCCCCCchhH
Q 037219 85 ---GHDIGQFLGLESMEK 99 (109)
Q Consensus 85 ---G~dIGqFPG~~~~~~ 99 (109)
|..-|+|||+.+-++
T Consensus 226 ~Y~GpnA~d~agi~vIDl 243 (387)
T PF08933_consen 226 SYRGPNAGDFAGINVIDL 243 (387)
T ss_dssp EE----CCGSCHHHHHHH
T ss_pred eecCCCccccccchHHHH
Confidence 448899998876544
No 9
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=44.99 E-value=28 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCC---CCchhhhcccCC
Q 037219 53 ALAEHIVAYLGSHG---VCSEEFDVGLQT 78 (109)
Q Consensus 53 ALA~~Ia~y~~s~~---~~~eefa~GL~~ 78 (109)
.||+.|+++|.... .=|..|.++++.
T Consensus 109 ~la~~l~~~l~~~~~~~~LPrKfki~vsg 137 (390)
T TIGR02435 109 PLAAELRAALENERALLELPPKFSVAIDG 137 (390)
T ss_pred HHHHHHHHHHhcChhhhcCCCceEEEEEC
Confidence 89999999995432 225667777654
No 10
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=44.86 E-value=47 Score=28.76 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=43.0
Q ss_pred CCChhhHHHHHHHHHH----HHHHhcccchh------------------------------hhhhHHHHHHHHHH---Hh
Q 037219 20 NFPTATAEKVKTGLVY----VVMAVGFKFRV------------------------------CCLKWLALAEHIVA---YL 62 (109)
Q Consensus 20 nIP~~~AekV~~~Ml~----ve~ALgl~tRv------------------------------iCGDWlALA~~Ia~---y~ 62 (109)
.||+..++.+++.|.+ +...++|.-|| +-|+=|+.|++.-. |.
T Consensus 81 ~vPp~~~~~ar~aLa~~~~~~~~~f~l~LRvg~VPV~~Ir~~G~dvrvAr~~~S~~~~~amf~GgGL~~AE~~mK~~~~~ 160 (373)
T PF11294_consen 81 AVPPSLLEAAREALAAVRAWVKEEFDLELRVGLVPVSDIRAEGLDVRVARFAASPNVSYAMFSGGGLAWAEALMKAGRYL 160 (373)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHhcCCceeEeeeEHHHHHhCCCeEEEEEEccCCCceEEEEecCcHHHHHHHHhccccc
Confidence 4789999999999887 55557777333 88999999988754 11
Q ss_pred ccCCCCchh-hhcccCCcccCCCc
Q 037219 63 GSHGVCSEE-FDVGLQTNILPLKG 85 (109)
Q Consensus 63 ~s~~~~~ee-fa~GL~~~~~p~~G 85 (109)
-........ -=-||.+||.|+..
T Consensus 161 i~~~~~~~~pdLtGlsCRW~~Ips 184 (373)
T PF11294_consen 161 IPPAPPGTRPDLTGLSCRWNPIPS 184 (373)
T ss_pred CCCCCCCCCCCCCCceeeCCcCCC
Confidence 111111111 12489999999843
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=43.74 E-value=20 Score=29.46 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=13.8
Q ss_pred hhhhHH-------------HHHHHHHHHhcc
Q 037219 47 CCLKWL-------------ALAEHIVAYLGS 64 (109)
Q Consensus 47 iCGDWl-------------ALA~~Ia~y~~s 64 (109)
+||||+ .+|++|.....+
T Consensus 459 ~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 459 LGGNYRGGVALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred EeccccCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 899999 778888776543
No 12
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.71 E-value=20 Score=31.41 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHH-HHHH---hcccchh
Q 037219 23 TATAEKVKTGLVY-VVMA---VGFKFRV 46 (109)
Q Consensus 23 ~~~AekV~~~Ml~-ve~A---Lgl~tRv 46 (109)
++.+.+..++|+. .|.. |+||-||
T Consensus 294 Pe~S~~~~E~m~~~ae~il~~LeLPyRv 321 (429)
T COG0172 294 PEESEEELEEMLGNAEEVLQELELPYRV 321 (429)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCceE
Confidence 4567888899999 5554 7888666
No 13
>cd08782 Death_DAPK1 Death domain found in death-associated protein kinase 1. Death domain (DD) found in death-associated protein kinase 1 (DAPK1). DAPK1 is composed of several functional domains, including a kinase domain, a CaM regulatory domain, ankyrin repeats, a cytoskeletal binding domain and a C-terminal DD. It plays important roles in a diverse range of signal transduction pathways including apoptosis, growth factor signalling, and autophagy. Loss of DAPK1 expression, usually because of DNA methylation, is implicated in many tumor types. DAPK1 is highly abundant in the brain and has also been associated with neurodegeneration. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as ad
Probab=41.00 E-value=15 Score=24.93 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHH------HHhcc
Q 037219 48 CLKWLALAEHIV------AYLGS 64 (109)
Q Consensus 48 CGDWlALA~~Ia------~y~~s 64 (109)
.=||+.||+.|. .||.+
T Consensus 17 g~DW~~LA~~Lg~~~~~~~~~~~ 39 (82)
T cd08782 17 GRDWCLLAVNLGLTDLVPQLDTN 39 (82)
T ss_pred CCCHHHHHHHcCChhhHHHHHhc
Confidence 559999998877 77754
No 14
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=40.22 E-value=14 Score=29.57 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.6
Q ss_pred hhh-hHH---------HHHHHHHHH
Q 037219 47 CCL-KWL---------ALAEHIVAY 61 (109)
Q Consensus 47 iCG-DWl---------ALA~~Ia~y 61 (109)
+|| ||. .||++|+..
T Consensus 167 ~cg~d~~~~~~~~G~~~l~~ai~~~ 191 (238)
T cd07397 167 PCGRDWKPPGGDWGDPDLALAISQI 191 (238)
T ss_pred ccccccCCcCCCCCCHHHHHHHHHH
Confidence 999 999 888888653
No 15
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=39.86 E-value=20 Score=27.12 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.8
Q ss_pred hhhhHH-----HHHHHHH
Q 037219 47 CCLKWL-----ALAEHIV 59 (109)
Q Consensus 47 iCGDWl-----ALA~~Ia 59 (109)
+|.||+ |||..+-
T Consensus 17 Vc~~f~V~EDgaLA~~LQ 34 (132)
T PF15295_consen 17 VCREFAVLEDGALAHRLQ 34 (132)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 899999 9997653
No 16
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=35.14 E-value=28 Score=26.58 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHH
Q 037219 25 TAEKVKTGLVYVVMA 39 (109)
Q Consensus 25 ~AekV~~~Ml~ve~A 39 (109)
-|.+||+.|+++|..
T Consensus 88 ~a~~vK~~~i~iEe~ 102 (165)
T TIGR03124 88 PALELKRLMIKLEES 102 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 478899999999987
No 17
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=34.87 E-value=25 Score=23.15 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=11.1
Q ss_pred HHHHHHHHHhccC
Q 037219 53 ALAEHIVAYLGSH 65 (109)
Q Consensus 53 ALA~~Ia~y~~s~ 65 (109)
..||+|++||.+.
T Consensus 4 ~MANQIa~ff~~~ 16 (61)
T PF11390_consen 4 KMANQIAAFFESY 16 (61)
T ss_pred HHHHHHHHHHccC
Confidence 4799999999776
No 18
>PRK09190 hypothetical protein; Provisional
Probab=32.88 E-value=56 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=33.1
Q ss_pred chhhhhhhCCCCCCCChhhHHHHHHHHHH-HHHHhcccchh---hhhh
Q 037219 7 KRHHGLELGAKKENFPTATAEKVKTGLVY-VVMAVGFKFRV---CCLK 50 (109)
Q Consensus 7 T~~yg~~nKVPQEnIP~~~AekV~~~Ml~-ve~ALgl~tRv---iCGD 50 (109)
.+.|.+..|.+-+ +|.+..++|.+.|.+ +=..|||.-|. ++|+
T Consensus 70 kk~l~Ralk~~v~-v~~~l~~~l~~~l~~ril~lLGLArRAGklVsG~ 116 (220)
T PRK09190 70 KKLFARAAKADVK-VPPDLADLVEALLARRALDALGLARKAGQVVSGF 116 (220)
T ss_pred hChhHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhCCEeecH
Confidence 3567888887433 789999999999888 88899999544 6664
No 19
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=31.24 E-value=56 Score=29.01 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCCCCChhhHHHHHHHHHHHHHH
Q 037219 17 KKENFPTATAEKVKTGLVYVVMA 39 (109)
Q Consensus 17 PQEnIP~~~AekV~~~Ml~ve~A 39 (109)
|.|++==-+.+.|++++.+...|
T Consensus 326 PaEHL~LP~~eDV~eGviA~kIA 348 (420)
T PF01964_consen 326 PAEHLGLPTPEDVREGVIASKIA 348 (420)
T ss_dssp TTTTTS---HHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 88887777889999999986665
No 20
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=29.21 E-value=32 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=12.5
Q ss_pred HHHH-HHHHhcccchhhhhhH
Q 037219 32 GLVY-VVMAVGFKFRVCCLKW 51 (109)
Q Consensus 32 ~Ml~-ve~ALgl~tRviCGDW 51 (109)
.++. +=.++|+|+|++.|..
T Consensus 59 ~l~~allr~~Gipar~v~g~~ 79 (113)
T PF01841_consen 59 SLFVALLRALGIPARVVSGYV 79 (113)
T ss_dssp HHHHHHHHHHT--EEEEEEEE
T ss_pred HHHHHHHhhCCCceEEEEEEc
Confidence 3444 7778899999877754
No 21
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=28.39 E-value=37 Score=20.10 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=12.4
Q ss_pred HHHHhcccchhhhhh
Q 037219 36 VVMAVGFKFRVCCLK 50 (109)
Q Consensus 36 ve~ALgl~tRviCGD 50 (109)
+=.++|+|+|++.|.
T Consensus 19 llr~~GIpar~v~g~ 33 (68)
T smart00460 19 LLRSLGIPARVVSGY 33 (68)
T ss_pred HHHHCCCCeEEEeee
Confidence 667889999998874
No 22
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=25.99 E-value=45 Score=25.58 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHH
Q 037219 48 CLKWLALAEHIVA 60 (109)
Q Consensus 48 CGDWlALA~~Ia~ 60 (109)
--||.|||+++.+
T Consensus 79 ~edW~alaerlea 91 (138)
T COG3565 79 VEDWFALAERLEA 91 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 3499999999987
No 23
>PF15463 ECM11: Extracellular mutant protein 11
Probab=25.46 E-value=55 Score=23.78 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=5.8
Q ss_pred hhhhHH
Q 037219 47 CCLKWL 52 (109)
Q Consensus 47 iCGDWl 52 (109)
-||||+
T Consensus 76 ~~Gd~~ 81 (139)
T PF15463_consen 76 EAGDWF 81 (139)
T ss_pred HHHHHH
Confidence 899999
No 24
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=23.69 E-value=57 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHH
Q 037219 25 TAEKVKTGLVYVVMA 39 (109)
Q Consensus 25 ~AekV~~~Ml~ve~A 39 (109)
.|..||+.|+.+|..
T Consensus 90 ~a~~vK~~~i~iEe~ 104 (170)
T PF03802_consen 90 DAEEVKRIMIEIEES 104 (170)
T ss_pred CHHHHHHHHHHHHcc
Confidence 388999999999987
No 25
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=23.43 E-value=67 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=10.1
Q ss_pred CCCChhhHHHHHH
Q 037219 19 ENFPTATAEKVKT 31 (109)
Q Consensus 19 EnIP~~~AekV~~ 31 (109)
++||+++|++|+.
T Consensus 20 d~v~~~Ka~~im~ 32 (36)
T PF06200_consen 20 DDVPPDKAQEIML 32 (36)
T ss_pred CCCCHHHHHHHHH
Confidence 5788888888764
No 26
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=21.91 E-value=1.2e+02 Score=25.84 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCChhhHHHHHHHHHHHHHHhccc-----chh--------------hhhhHHHHHHHHHHHhccCCCCchhhhcccCC
Q 037219 20 NFPTATAEKVKTGLVYVVMAVGFK-----FRV--------------CCLKWLALAEHIVAYLGSHGVCSEEFDVGLQT 78 (109)
Q Consensus 20 nIP~~~AekV~~~Ml~ve~ALgl~-----tRv--------------iCGDWlALA~~Ia~y~~s~~~~~eefa~GL~~ 78 (109)
.|+.+++++|.++|= -.||+ .+| .|.|=+.||++|.+||- ...-|-.|-+-+.-
T Consensus 74 ~i~~e~~~~v~~~L~----~iG~~~G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~-~~~~P~KfKI~vsG 146 (317)
T COG2221 74 GISPEDADDVVEELR----EIGLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFL-EVPVPYKFKIAVSG 146 (317)
T ss_pred cCCHHHHHHHHHHHH----HcCCCCCCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhh-cCCCCceEEEEeec
Confidence 377788888776654 34455 222 67777799999999997 55667777776643
No 27
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.77 E-value=32 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.8
Q ss_pred hhhhhhhCCCCCCCChh
Q 037219 8 RHHGLELGAKKENFPTA 24 (109)
Q Consensus 8 ~~yg~~nKVPQEnIP~~ 24 (109)
..|+++++||++.+|++
T Consensus 50 ~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 50 ARWARERGVPVIRFPAD 66 (71)
T ss_pred HHHHHHCCCeeEEeCcC
Confidence 46899999999999875
No 28
>cd08312 Death_MyD88 Death domain of Myeloid Differentation primary response protein MyD88. Death Domain (DD) of Myeloid Differentiation primary response protein 88 (MyD88). MyD88 is an adaptor protein involved in interleukin-1 receptor (IL-1R)- and Toll-like receptor (TLR)-induced activation of nuclear factor-kappaB (NF-kB) and mitogen activated protein kinase pathways that lead to the induction of proinflammatory cytokines. It is a key component in the signaling pathway of pathogen recognition in the innate immune system. MyD88 contains an N-terminal DD and a C-terminal Toll/IL-1 Receptor (TIR) homology domain that mediates interaction with TLRs and IL-1R. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and
Probab=21.56 E-value=49 Score=21.90 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHH
Q 037219 47 CCLKWLALAEHI 58 (109)
Q Consensus 47 iCGDWlALA~~I 58 (109)
..=||..||+++
T Consensus 15 ~g~DWr~LA~~L 26 (79)
T cd08312 15 VAADWTALAEEM 26 (79)
T ss_pred cccCHHHHHHHc
Confidence 345999999987
No 29
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.40 E-value=92 Score=24.55 Aligned_cols=55 Identities=20% Similarity=0.081 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCCCCchhhhcccCCcccCCCcCCCCCCCCCCchhHHHHhhccc
Q 037219 53 ALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKVEAQAYQP 107 (109)
Q Consensus 53 ALA~~Ia~y~~s~~~~~eefa~GL~~~~~p~~G~dIGqFPG~~~~~~~e~~~~~~ 107 (109)
.|+.+|..-+.+...+-++.|.---.-=+.-.|.|+|.|-+=.-+.--|.++|.+
T Consensus 87 ~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgqMqk~FEdaafaL 141 (163)
T KOG3259|consen 87 DLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQMQKPFEDAAFAL 141 (163)
T ss_pred HHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccccccccccchhhhhhc
Confidence 4566666666666666666666555555666788999997655444445555544
No 30
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=20.85 E-value=66 Score=27.18 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=46.9
Q ss_pred hhhhhCCCCCCCChhhHHHHHH-HHHH-HHHHhccc--chhhhhhHHHHHHHHHHHhccCCCCchhhhcccCCcccCCCc
Q 037219 10 HGLELGAKKENFPTATAEKVKT-GLVY-VVMAVGFK--FRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKG 85 (109)
Q Consensus 10 yg~~nKVPQEnIP~~~AekV~~-~Ml~-ve~ALgl~--tRviCGDWlALA~~Ia~y~~s~~~~~eefa~GL~~~~~p~~G 85 (109)
||...=+|-|||..+.. |-+ .-.+ +....|-| +=++.|| |...+++|.-|+-+|-++..
T Consensus 196 y~L~~~f~ieNIYSa~k--vGK~~cFe~I~~Rfg~p~~~f~~IGD---------------G~eEe~aAk~l~wPFw~I~~ 258 (274)
T TIGR01658 196 FRLDTIFRIENVYSSIK--VGKLQCFKWIKERFGHPKVRFCAIGD---------------GWEECTAAQAMNWPFVKIDL 258 (274)
T ss_pred hccCCccccccccchhh--cchHHHHHHHHHHhCCCCceEEEeCC---------------ChhHHHHHHhcCCCeEEeec
Confidence 78888889999987653 322 2222 33445553 2235565 66777889999999999999
Q ss_pred C--CCCCCCCCC
Q 037219 86 H--DIGQFLGLE 95 (109)
Q Consensus 86 ~--dIGqFPG~~ 95 (109)
| -.-.||+++
T Consensus 259 h~Dl~~l~~aL~ 270 (274)
T TIGR01658 259 HPDSSHRFPGLT 270 (274)
T ss_pred CCCHHHhCccCC
Confidence 8 345788876
Done!