Query 037219
Match_columns 109
No_of_seqs 24 out of 26
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kkj_A Amine oxidase, flavin-c 94.1 0.02 6.7E-07 36.5 1.6 19 47-65 299-330 (336)
2 1r9w_A Replication protein E1; 89.2 0.16 5.6E-06 37.5 1.9 36 30-65 2-56 (145)
3 1f08_A Replication protein E1; 88.9 0.17 5.7E-06 37.6 1.8 37 29-65 4-59 (148)
4 3qj4_A Renalase; FAD/NAD(P)-bi 84.1 0.56 1.9E-05 34.5 2.4 17 26-42 259-276 (342)
5 1yvv_A Amine oxidase, flavin-c 74.1 1.3 4.5E-05 31.8 1.6 41 25-65 245-330 (336)
6 3nks_A Protoporphyrinogen oxid 44.1 18 0.00063 27.4 3.3 19 25-43 385-404 (477)
7 3lov_A Protoporphyrinogen oxid 28.6 17 0.00057 27.8 0.8 25 47-71 437-474 (475)
8 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.1 18 0.00063 23.0 -0.2 6 47-52 7-12 (140)
9 3p9n_A Possible methyltransfer 18.1 57 0.0019 21.6 1.7 34 9-43 10-44 (189)
10 2lj4_A Peptidyl-prolyl CIS-tra 17.2 63 0.0022 21.5 1.8 13 81-93 67-79 (115)
No 1
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=94.14 E-value=0.02 Score=36.47 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.4
Q ss_pred hhhhHH-------------HHHHHHHHHhccC
Q 037219 47 CCLKWL-------------ALAEHIVAYLGSH 65 (109)
Q Consensus 47 iCGDWl-------------ALA~~Ia~y~~s~ 65 (109)
+||||+ .+|++|.+++++-
T Consensus 299 l~GDa~~g~gv~~A~~sG~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 299 VCGDWCLSGRVEGAWLSGQEAARRLLEHLQLE 330 (336)
T ss_dssp ECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred EEecccCCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 999998 7899999999664
No 2
>1r9w_A Replication protein E1; HPV-18, DNA-binding domain, viral replication, initiator protein; 1.80A {Human papillomavirus type 18} SCOP: d.89.1.2
Probab=89.20 E-value=0.16 Score=37.54 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=29.2
Q ss_pred HHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219 30 KTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH 65 (109)
Q Consensus 30 ~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~ 65 (109)
++.||+ |+.+.|.+ ||. +|.||+ .|++.+...++.+
T Consensus 2 rA~ll~kFKe~fgvsf~eLtR~FKSdKTcc~dWVv~~~gv~~~l~ea~k~lLq~h 56 (145)
T 1r9w_A 2 QGAMLAVFKDTYGLSFTDLVRNFKSDKTTCTDWVTAIFGVNPTIAEGFKTLIQPF 56 (145)
T ss_dssp HHHHHHHHHHHHSSCGGGTBC-------CEEEEEEEEEEECHHHHHTHHHHHGGG
T ss_pred hhHHHHHHHHHhCcChHheeecccCCCcCccccEEEEEecCHHHHHHHHHHHHhh
Confidence 678999 99999998 666 999999 8888877766554
No 3
>1f08_A Replication protein E1; DNA-binding domain, initiator protein, helicase; 1.90A {Bovine papillomavirus} SCOP: d.89.1.2 PDB: 1ksx_A 1ksy_A
Probab=88.90 E-value=0.17 Score=37.63 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=30.5
Q ss_pred HHHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219 29 VKTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH 65 (109)
Q Consensus 29 V~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~ 65 (109)
.++.||+ |+.+.|.+ ||. +|.||+ .|++.+...++.+
T Consensus 4 ~ra~ll~kFKe~fgvsf~eLtR~FKSdKTcc~dWVv~~fgv~~~l~ea~k~lLq~h 59 (148)
T 1f08_A 4 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQ 59 (148)
T ss_dssp CCHHHHHHHHHHHSSCGGGSBCCCCCTTCCEEEEEEEEESCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcChHHeeecccCCCcCccccEEEEEecCHHHHHHHHHHHHhh
Confidence 4678999 99999998 565 999999 8888888777654
No 4
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=84.06 E-value=0.56 Score=34.53 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=14.0
Q ss_pred HHHHHHHHHH-HHHHhcc
Q 037219 26 AEKVKTGLVY-VVMAVGF 42 (109)
Q Consensus 26 AekV~~~Ml~-ve~ALgl 42 (109)
.+++.+.+++ ++..||.
T Consensus 259 ~~~~~~~~~~~l~~~~g~ 276 (342)
T 3qj4_A 259 IEDVQELVFQQLENILPG 276 (342)
T ss_dssp HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 5788888998 9988873
No 5
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=74.09 E-value=1.3 Score=31.78 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=29.8
Q ss_pred hHHHHHHHHHH-HHHHhccc------------------------------chh-hhhhHH-------------HHHHHHH
Q 037219 25 TAEKVKTGLVY-VVMAVGFK------------------------------FRV-CCLKWL-------------ALAEHIV 59 (109)
Q Consensus 25 ~AekV~~~Ml~-ve~ALgl~------------------------------tRv-iCGDWl-------------ALA~~Ia 59 (109)
..+++.+++++ +...||.. -|+ +||||+ +||+.|.
T Consensus 245 ~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~~a~~~~~~~~~~~~~~~~rl~laGDa~~g~gv~~a~~sg~~lA~~l~ 324 (336)
T 1yvv_A 245 SREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLL 324 (336)
T ss_dssp CHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCCSCEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcEEEccccCccCCCCCCCCCeeecCCCCEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 34667777777 88777732 022 899999 8999999
Q ss_pred HHhccC
Q 037219 60 AYLGSH 65 (109)
Q Consensus 60 ~y~~s~ 65 (109)
+++...
T Consensus 325 ~~~~~~ 330 (336)
T 1yvv_A 325 EHLQLE 330 (336)
T ss_dssp HHTTC-
T ss_pred HHhhhh
Confidence 988654
No 6
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=44.15 E-value=18 Score=27.41 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=13.7
Q ss_pred hHHHHHHHHHH-HHHHhccc
Q 037219 25 TAEKVKTGLVY-VVMAVGFK 43 (109)
Q Consensus 25 ~AekV~~~Ml~-ve~ALgl~ 43 (109)
.-+++.+.+++ ++..+|+.
T Consensus 385 ~~~~~~~~~~~~L~~~~g~~ 404 (477)
T 3nks_A 385 SQELFQQRAQEAAATQLGLK 404 (477)
T ss_dssp CHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHhCCC
Confidence 34677777777 88888764
No 7
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=28.57 E-value=17 Score=27.78 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=14.1
Q ss_pred hhhhHH-------------HHHHHHHHHhccCCCCchh
Q 037219 47 CCLKWL-------------ALAEHIVAYLGSHGVCSEE 71 (109)
Q Consensus 47 iCGDWl-------------ALA~~Ia~y~~s~~~~~ee 71 (109)
+||||+ .+|+.|.+.++....+++|
T Consensus 437 ~aG~~~~g~g~~~a~~sG~~aA~~i~~~l~~~~~~~~~ 474 (475)
T 3lov_A 437 LAGLAYDGVGLPDCVASAKTMIESIELEQSHTDESVNE 474 (475)
T ss_dssp ECSTTTSCSSHHHHHHHHHHHHHHHHHTC---------
T ss_pred EEccCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 899988 7889999888776555544
No 8
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.10 E-value=18 Score=22.99 Aligned_cols=6 Identities=33% Similarity=1.298 Sum_probs=5.6
Q ss_pred hhhhHH
Q 037219 47 CCLKWL 52 (109)
Q Consensus 47 iCGDWl 52 (109)
+|+||+
T Consensus 7 ~c~~w~ 12 (140)
T 2ku7_A 7 KCDRWV 12 (140)
T ss_dssp CCSSCH
T ss_pred cCCCcc
Confidence 699999
No 9
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=18.06 E-value=57 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=24.0
Q ss_pred hhhhhhCCCCCCCChhhHHHHHHHHHH-HHHHhccc
Q 037219 9 HHGLELGAKKENFPTATAEKVKTGLVY-VVMAVGFK 43 (109)
Q Consensus 9 ~yg~~nKVPQEnIP~~~AekV~~~Ml~-ve~ALgl~ 43 (109)
..|+.-++|. ..+.-+.+++++.|+. +...+..+
T Consensus 10 ~~g~~l~~~~-~~~rp~~~~~~~~l~~~l~~~~~~~ 44 (189)
T 3p9n_A 10 AGGRRIAVPP-RGTRPTTDRVRESLFNIVTARRDLT 44 (189)
T ss_dssp TTTCEEECCS-CCC---CHHHHHHHHHHHHHHSCCT
T ss_pred cCCcEecCCC-CCCccCcHHHHHHHHHHHHhccCCC
Confidence 4577888998 7788888999999999 77654344
No 10
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=17.23 E-value=63 Score=21.48 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=8.5
Q ss_pred cCCCcCCCCCCCC
Q 037219 81 LPLKGHDIGQFLG 93 (109)
Q Consensus 81 ~p~~G~dIGqFPG 93 (109)
+...|+|+|-|+-
T Consensus 67 sa~~GGdLG~~~~ 79 (115)
T 2lj4_A 67 SYASGGDLGFFSS 79 (115)
T ss_dssp GGGTTSEEEEEET
T ss_pred ccccCCccceecC
Confidence 3446778887763
Done!