Query 037219
Match_columns 109
No_of_seqs 24 out of 26
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 16:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r9wa_ d.89.1.2 (A:) Replicat 89.9 0.064 4.7E-06 38.0 1.9 36 30-65 2-56 (145)
2 d1seza1 c.3.1.2 (A:13-329,A:44 78.2 0.35 2.6E-05 30.1 1.2 19 47-65 341-372 (373)
3 d1f08a_ d.89.1.2 (A:) Replicat 77.1 0.54 4E-05 33.1 2.0 35 31-65 6-59 (148)
4 d1b5qa1 c.3.1.2 (A:5-293,A:406 35.6 7.2 0.00053 22.8 1.4 20 45-64 308-344 (347)
5 d2qm8a1 c.37.1.10 (A:5-327) Me 25.9 5.7 0.00042 29.2 -0.4 50 45-95 10-63 (323)
6 d1e5ra_ b.82.2.4 (A:) Type II 21.9 24 0.0017 25.9 2.5 28 47-74 247-287 (290)
7 d1oj7a_ e.22.1.2 (A:) Hypothet 18.2 1.1E+02 0.0077 22.0 5.4 52 10-61 310-366 (390)
8 d2dy1a3 d.14.1.1 (A:455-569) E 17.5 32 0.0023 21.9 2.0 26 10-35 39-64 (115)
9 d1agxa_ c.88.1.1 (A:) Glutamin 16.3 41 0.003 24.2 2.6 19 46-64 62-80 (331)
10 d1uxda_ a.35.1.5 (A:) Fructose 15.4 54 0.0039 18.5 2.5 33 3-35 12-44 (59)
No 1
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=89.87 E-value=0.064 Score=37.98 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219 30 KTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH 65 (109)
Q Consensus 30 ~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~ 65 (109)
+++||+ |+.+.|++ ||. +|.||+ .|++.+...++.+
T Consensus 2 rAt~L~kFKe~fgvSf~eLtR~FKSdKTcc~dWVv~~~gv~~~l~ea~k~lLq~h 56 (145)
T d1r9wa_ 2 QGAMLAVFKDTYGLSFTDLVRNFKSDKTTCTDWVTAIFGVNPTIAEGFKTLIQPF 56 (145)
T ss_dssp HHHHHHHHHHHHSSCGGGTBC-------CEEEEEEEEEEECHHHHHTHHHHHGGG
T ss_pred hhhHHHHHHHHhCcchHheeecccCCCcchhcceEEEEEeCHHHHHHHHHHHHhh
Confidence 578999 99999998 666 999999 7887777766543
No 2
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=78.16 E-value=0.35 Score=30.06 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.7
Q ss_pred hhhhHH-------------HHHHHHHHHhccC
Q 037219 47 CCLKWL-------------ALAEHIVAYLGSH 65 (109)
Q Consensus 47 iCGDWl-------------ALA~~Ia~y~~s~ 65 (109)
+||||+ ..|++|..|+.+.
T Consensus 341 ~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~ 372 (373)
T d1seza1 341 YAGNHRGGLSVGKALSSGCNAADLVISYLESV 372 (373)
T ss_dssp ECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred EEecCCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 899998 7899999999775
No 3
>d1f08a_ d.89.1.2 (A:) Replication initiation protein E1 {Bovine papillomavirus [TaxId: 10571]}
Probab=77.09 E-value=0.54 Score=33.11 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=28.1
Q ss_pred HHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219 31 TGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH 65 (109)
Q Consensus 31 ~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~ 65 (109)
..||+ |+.+.|.+ ||. +|.||+ .|++.+...++.+
T Consensus 6 ~~~LakFKe~fgvSF~eLtR~FKSdKTcc~dWVv~~~gv~~~l~ea~k~lLq~h 59 (148)
T d1f08a_ 6 VFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQ 59 (148)
T ss_dssp HHHHHHHHHHHSSCGGGSBCCCCCTTCCEEEEEEEEESCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcchHheeecccCCCcccccceEEEEecCHHHHHHHHHHhhcc
Confidence 34688 99999988 565 999999 8888887777654
No 4
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=35.59 E-value=7.2 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=14.7
Q ss_pred hh-hhhhHH----------------HHHHHHHHHhcc
Q 037219 45 RV-CCLKWL----------------ALAEHIVAYLGS 64 (109)
Q Consensus 45 Rv-iCGDWl----------------ALA~~Ia~y~~s 64 (109)
|| +||||. ..|+.|+++++.
T Consensus 308 ~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~ 344 (347)
T d1b5qa1 308 RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK 344 (347)
T ss_dssp TEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 55 899997 566777777653
No 5
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=25.89 E-value=5.7 Score=29.16 Aligned_cols=50 Identities=24% Similarity=0.198 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHHHHhccCCCCchhhhcccCCcccCCCcC----CCCCCCCCC
Q 037219 45 RVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGH----DIGQFLGLE 95 (109)
Q Consensus 45 RviCGDWlALA~~Ia~y~~s~~~~~eefa~GL~~~~~p~~G~----dIGqFPG~~ 95 (109)
++.-||.-|||+.|-. ..+......+...-|-....|-.|. -|+.|||.+
T Consensus 10 ~~~~g~~~~lar~it~-~E~~~~~~~~~~~~~~~~~~~~~~~~~~igitG~pGaG 63 (323)
T d2qm8a1 10 RLLAGDRAALARAITL-AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVG 63 (323)
T ss_dssp HHHTTCHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSC
T ss_pred HHHcCCHHHHHHHHHH-HhCCCchhHHHHHHHHHHhhhccCCceEEeeeCCCCCC
Confidence 3457999999999955 4554222222333333344444454 789999998
No 6
>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}
Probab=21.87 E-value=24 Score=25.87 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=23.5
Q ss_pred hhhhHH-------------HHHHHHHHHhccCCCCchhhhc
Q 037219 47 CCLKWL-------------ALAEHIVAYLGSHGVCSEEFDV 74 (109)
Q Consensus 47 iCGDWl-------------ALA~~Ia~y~~s~~~~~eefa~ 74 (109)
.|=||| ..|+++.+||--.....|+|++
T Consensus 247 ~~~d~l~~~~~~~~d~~~~~~~~~~~~~~~~~r~~~e~f~~ 287 (290)
T d1e5ra_ 247 ETYDWLIEISKQAGDEKMVVKAEQIRDFAVEARALSERFSL 287 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCCCCSSCCS
T ss_pred HHHHHHHHHHhhcCChHHHHHHHhhhheEEeecccCceecc
Confidence 677999 7899999999877777788875
No 7
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]}
Probab=18.18 E-value=1.1e+02 Score=22.00 Aligned_cols=52 Identities=8% Similarity=-0.073 Sum_probs=36.8
Q ss_pred hhhhhCCCCCCCChhhHHHHHHHHHHHHHHhcccchh-----hhhhHHHHHHHHHHH
Q 037219 10 HGLELGAKKENFPTATAEKVKTGLVYVVMAVGFKFRV-----CCLKWLALAEHIVAY 61 (109)
Q Consensus 10 yg~~nKVPQEnIP~~~AekV~~~Ml~ve~ALgl~tRv-----iCGDWlALA~~Ia~y 61 (109)
|+.......+.-+.+.++++.+.+-.|=..||+|++. ==.||-+||+.+...
T Consensus 310 ~a~~~~~~~~~~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~ 366 (390)
T d1oj7a_ 310 YAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEH 366 (390)
T ss_dssp HHHHHHCCCCSCHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHT
T ss_pred HHHHhcCcccCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc
Confidence 4555555666777777777777776677779999876 235677898887774
No 8
>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=17.49 E-value=32 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.4
Q ss_pred hhhhhCCCCCCCChhhHHHHHHHHHH
Q 037219 10 HGLELGAKKENFPTATAEKVKTGLVY 35 (109)
Q Consensus 10 yg~~nKVPQEnIP~~~AekV~~~Ml~ 35 (109)
++=.|+|...+||+.-..-|.+++..
T Consensus 39 ~~f~~~i~~~~iP~~~i~ave~gv~~ 64 (115)
T d2dy1a3 39 YGFEWRITGGVIPSKYQEAIEEGIKE 64 (115)
T ss_dssp CEEEECCCTTSSCGGGHHHHHHHHHH
T ss_pred eeEEEEecccccchhHHHHHHHHHHH
Confidence 77789999999999998888877655
No 9
>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter glutaminasificans [TaxId: 474]}
Probab=16.26 E-value=41 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHhcc
Q 037219 46 VCCLKWLALAEHIVAYLGS 64 (109)
Q Consensus 46 viCGDWlALA~~Ia~y~~s 64 (109)
+-.-||+.||+.|.+.+..
T Consensus 62 ~~~~~w~~la~~i~~~~~~ 80 (331)
T d1agxa_ 62 ITDKELLSLARQVNDLVKK 80 (331)
T ss_dssp CCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 3667999999999986644
No 10
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.41 E-value=54 Score=18.53 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=23.5
Q ss_pred CCccchhhhhhhCCCCCCCChhhHHHHHHHHHH
Q 037219 3 LHPRKRHHGLELGAKKENFPTATAEKVKTGLVY 35 (109)
Q Consensus 3 ~~~sT~~yg~~nKVPQEnIP~~~AekV~~~Ml~ 35 (109)
+.++|-.....|+=.+..|.+++.++|.+.+-+
T Consensus 12 vS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~ 44 (59)
T d1uxda_ 12 VSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE 44 (59)
T ss_dssp SCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHH
Confidence 456777777666644567899999999876543
Done!