BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037220
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 6   GYKFQPSNEQILYLMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFC 65
           G++F P++++++   + ++        PI   VD+   +P DL   +   + +  WYFF 
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75

Query: 66  EPHHKYMKSNRAHRRTKAGHGKITSKDSQIKARN 99
               KY   +R +R    G+ K T  D  +  R 
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG 109


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 6   GYKFQPSNEQILY-LMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+++   +  K     FS   I +I D+   +P  L   +K    ++ WYFF
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLP--NKALFGEKEWYFF 79

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
                KY   +R +R   +G+ K T  D  I
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKII 110


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 6   GYKFQPSNEQILY-LMVEKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFF 64
           G++F P++E+++   +  K     FS   I +I D+   +P  L   +K    ++ WYFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLP--NKALFGEKEWYFF 76

Query: 65  CEPHHKYMKSNRAHRRTKAGHGKITSKDSQI 95
                KY   +R +R   +G+ K T  D  I
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKII 107


>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
           Lactobacillus Acidophilus Ncfm
 pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
           Lactobacillus Acidophilus Ncfm
          Length = 338

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 79  RRTKAGHGKITSKDSQIKARNGL 101
           R+TK     + S DSQIK RNGL
Sbjct: 220 RKTKRIGDALNSDDSQIKLRNGL 242


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,212,942
Number of Sequences: 62578
Number of extensions: 107408
Number of successful extensions: 300
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)