Query 037220
Match_columns 101
No_of_seqs 105 out of 720
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.5E-41 5.2E-46 241.4 8.9 95 1-98 13-108 (174)
2 1ut7_A No apical meristem prot 100.0 4.2E-41 1.4E-45 238.5 7.6 95 1-98 15-110 (171)
3 1ldd_A APC2WHB, anaphase promo 60.6 2.3 7.8E-05 25.6 0.5 27 3-30 36-64 (74)
4 3nr5_A MAF1, repressor of RNA 52.1 4.9 0.00017 27.7 1.1 13 33-46 118-130 (164)
5 1cmb_A Met APO-repressor; DNA- 52.0 15 0.0005 23.1 3.2 38 10-52 50-88 (104)
6 2ehh_A DHDPS, dihydrodipicolin 50.8 4.8 0.00017 29.3 0.9 18 3-21 102-119 (294)
7 2ojp_A DHDPS, dihydrodipicolin 50.0 5.1 0.00017 29.2 0.9 18 3-21 103-120 (292)
8 3cpr_A Dihydrodipicolinate syn 49.7 5.2 0.00018 29.4 0.9 25 3-28 118-144 (304)
9 1f6k_A N-acetylneuraminate lya 49.5 5.2 0.00018 29.1 0.9 25 3-28 106-132 (293)
10 2rfg_A Dihydrodipicolinate syn 49.5 6.1 0.00021 28.9 1.3 18 3-21 102-119 (297)
11 2nuw_A 2-keto-3-deoxygluconate 49.1 6.6 0.00023 28.5 1.5 25 3-28 98-125 (288)
12 2yxg_A DHDPS, dihydrodipicolin 49.0 5.4 0.00018 29.0 0.9 18 3-21 102-119 (289)
13 2vc6_A MOSA, dihydrodipicolina 48.2 5.6 0.00019 28.9 0.9 25 3-28 102-128 (292)
14 2wkj_A N-acetylneuraminate lya 47.9 5.7 0.0002 29.1 0.9 18 3-21 113-130 (303)
15 3b4u_A Dihydrodipicolinate syn 47.6 7.2 0.00025 28.4 1.5 18 3-21 105-123 (294)
16 1o5k_A DHDPS, dihydrodipicolin 46.9 6.1 0.00021 29.0 0.9 18 3-21 114-131 (306)
17 3dz1_A Dihydrodipicolinate syn 46.5 6.7 0.00023 28.9 1.2 22 3-26 109-132 (313)
18 2r91_A 2-keto-3-deoxy-(6-phosp 46.2 7.7 0.00026 28.1 1.4 25 3-28 97-124 (286)
19 3d0c_A Dihydrodipicolinate syn 46.1 7.8 0.00027 28.6 1.5 18 3-21 113-130 (314)
20 3si9_A DHDPS, dihydrodipicolin 46.0 6.4 0.00022 29.2 0.9 25 3-28 124-150 (315)
21 3e96_A Dihydrodipicolinate syn 45.7 8 0.00027 28.5 1.5 18 3-21 113-130 (316)
22 1xky_A Dihydrodipicolinate syn 45.6 6.5 0.00022 28.8 0.9 18 3-21 114-131 (301)
23 2v9d_A YAGE; dihydrodipicolini 45.5 6.6 0.00023 29.5 1.0 18 3-21 133-150 (343)
24 3daq_A DHDPS, dihydrodipicolin 45.0 6.8 0.00023 28.5 0.9 25 3-28 104-130 (292)
25 1w3i_A EDA, 2-keto-3-deoxy glu 44.4 7.4 0.00025 28.4 1.1 25 3-28 98-125 (293)
26 3m5v_A DHDPS, dihydrodipicolin 44.3 7 0.00024 28.6 0.9 25 3-28 110-136 (301)
27 3h5d_A DHDPS, dihydrodipicolin 44.2 7.1 0.00024 28.8 0.9 18 3-21 110-127 (311)
28 3na8_A Putative dihydrodipicol 44.0 8.8 0.0003 28.3 1.5 25 3-28 126-152 (315)
29 2r8w_A AGR_C_1641P; APC7498, d 44.0 8.8 0.0003 28.6 1.5 18 3-21 136-153 (332)
30 3a5f_A Dihydrodipicolinate syn 43.2 5.4 0.00019 29.0 0.2 18 3-21 103-120 (291)
31 3fkr_A L-2-keto-3-deoxyarabona 42.8 9.2 0.00032 28.1 1.4 26 3-28 110-139 (309)
32 3l21_A DHDPS, dihydrodipicolin 42.4 7.8 0.00027 28.5 0.9 18 3-21 117-134 (304)
33 3flu_A DHDPS, dihydrodipicolin 42.3 7.9 0.00027 28.3 0.9 25 3-28 109-135 (297)
34 3tak_A DHDPS, dihydrodipicolin 42.0 8 0.00027 28.1 0.9 25 3-28 103-129 (291)
35 3qze_A DHDPS, dihydrodipicolin 41.6 8.2 0.00028 28.5 0.9 25 3-28 125-151 (314)
36 3vdj_A Circumsporozoite (CS) p 39.8 19 0.00066 21.7 2.3 20 7-27 2-21 (77)
37 2pcq_A Putative dihydrodipicol 38.7 7.3 0.00025 28.2 0.3 18 3-21 95-113 (283)
38 4dpp_A DHDPS 2, dihydrodipicol 38.0 9.1 0.00031 29.2 0.7 18 3-21 161-178 (360)
39 4dox_A Coat protein; all helix 38.0 17 0.0006 26.1 2.2 22 4-25 156-178 (226)
40 2hmc_A AGR_L_411P, dihydrodipi 34.6 15 0.00051 27.6 1.4 18 3-21 125-143 (344)
41 3g1g_A GAG polyprotein, capsid 33.2 27 0.00091 21.6 2.2 20 10-29 62-81 (87)
42 3dct_B Nuclear receptor coacti 25.8 34 0.0012 15.5 1.3 11 11-21 3-13 (21)
43 3qfe_A Putative dihydrodipicol 24.9 30 0.001 25.5 1.6 25 3-28 113-141 (318)
44 2c4b_A Barnase mcoeeti fusion; 21.8 67 0.0023 21.5 2.7 33 12-47 4-38 (143)
45 3maz_A Signal-transducing adap 21.7 69 0.0023 20.8 2.7 20 10-29 86-105 (125)
46 3eb2_A Putative dihydrodipicol 21.2 38 0.0013 24.6 1.5 24 4-28 107-132 (300)
47 3pp4_P B-lymphocyte antigen CD 20.7 47 0.0016 15.8 1.3 13 39-51 1-13 (25)
48 1ju5_A CRK; CRK, SH2, SH3, ada 20.5 88 0.003 18.9 3.0 17 9-25 82-99 (109)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.5e-41 Score=241.38 Aligned_cols=95 Identities=23% Similarity=0.480 Sum_probs=84.6
Q ss_pred CCCCCCceecCChHHHHHHHH-HhhcCCCCCCCCceeccCCCCCCccCcccccccCCCCceEEEEeccccccCCCCCccc
Q 037220 1 MENLMGYKFQPSNEQILYLMV-EKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHR 79 (101)
Q Consensus 1 m~lppG~rF~PTDeELi~~yL-~Ki~g~~~~~~~I~e~~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R 79 (101)
+.|||||||+|||||||.||| +|+.|.+++.++|.|+ |||.+|||+||+.+..+ +.+|||||++.+|+++|.|.+|
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhccC--CceEEEEeccccccCCCCCcee
Confidence 479999999999999999999 9999999999999999 99999999999987643 4799999999999999999999
Q ss_pred cCCCCeeeeeccceeeecC
Q 037220 80 RTKAGHGKITSKDSQIKAR 98 (101)
Q Consensus 80 ~~~~G~Wk~~g~~~~I~~~ 98 (101)
+|++|+||++|++++|.++
T Consensus 90 ~t~~G~WkatG~dk~I~~~ 108 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR 108 (174)
T ss_dssp EETTEEEEECSCCEEECCS
T ss_pred ecCCceEccCCCCcEEeeC
Confidence 9999999999999999875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4.2e-41 Score=238.49 Aligned_cols=95 Identities=26% Similarity=0.482 Sum_probs=82.4
Q ss_pred CCCCCCceecCChHHHHHHHH-HhhcCCCCCCCCceeccCCCCCCccCcccccccCCCCceEEEEeccccccCCCCCccc
Q 037220 1 MENLMGYKFQPSNEQILYLMV-EKRLNPHFSHHPIKDIVDICSLEPGDLATASKTESEDQVWYFFCEPHHKYMKSNRAHR 79 (101)
Q Consensus 1 m~lppG~rF~PTDeELi~~yL-~Ki~g~~~~~~~I~e~~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R 79 (101)
+.|||||||+|||||||.||| +|+.|.+++.++|+|+ |||.+|||+||+.+.. ++++|||||++.+|+++|.|.+|
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhhc--CCccEEEEeccccccCCCCcccc
Confidence 479999999999999999999 9999999999999999 9999999999998653 35799999999999999999999
Q ss_pred cCCCCeeeeeccceeeecC
Q 037220 80 RTKAGHGKITSKDSQIKAR 98 (101)
Q Consensus 80 ~~~~G~Wk~~g~~~~I~~~ 98 (101)
+|++|+||++|++++|.++
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~ 110 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTE 110 (171)
T ss_dssp EETTEEEEEEEEEEEEEET
T ss_pred cCCCCEEeccCCCceEEec
Confidence 9999999999999999875
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=60.58 E-value=2.3 Score=25.61 Aligned_cols=27 Identities=4% Similarity=-0.025 Sum_probs=21.8
Q ss_pred CCCCceecC-ChHHHHHHHH-HhhcCCCCC
Q 037220 3 NLMGYKFQP-SNEQILYLMV-EKRLNPHFS 30 (101)
Q Consensus 3 lppG~rF~P-TDeELi~~yL-~Ki~g~~~~ 30 (101)
.|.|+.|.. |++||-. || .|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 467899998 8888876 99 999887653
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=52.13 E-value=4.9 Score=27.67 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.4
Q ss_pred CceeccCCCCCCcc
Q 037220 33 PIKDIVDICSLEPG 46 (101)
Q Consensus 33 ~I~e~~Dvy~~~Pw 46 (101)
-+.++ |||++.|.
T Consensus 118 ~l~dC-~IYsY~Pd 130 (164)
T 3nr5_A 118 CLAEC-DIYSYNPD 130 (164)
T ss_dssp CGGGC-EEEEECCC
T ss_pred CccCC-eEEEEcCC
Confidence 37899 99999998
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=52.00 E-value=15 Score=23.10 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=29.4
Q ss_pred cCChHHHHHH-HHHhhcCCCCCCCCceeccCCCCCCccCccccc
Q 037220 10 QPSNEQILYL-MVEKRLNPHFSHHPIKDIVDICSLEPGDLATAS 52 (101)
Q Consensus 10 ~PTDeELi~~-yL~Ki~g~~~~~~~I~e~~Dvy~~~Pw~L~~~~ 52 (101)
+-|.-||++. ||.-..|+|+|.+ . |+-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~-Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----A-DLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----G-GGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----h-hhhhcCCccchHHH
Confidence 4577788775 4488899999974 4 88888999999754
No 6
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=50.81 E-value=4.8 Score=29.33 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=14.6
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 48899999999996
No 7
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=49.97 E-value=5.1 Score=29.18 Aligned_cols=18 Identities=17% Similarity=-0.023 Sum_probs=14.4
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 103 ~~P~-y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFK 120 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 48899999999886
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=49.68 E-value=5.2 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=17.7
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.+.||+++|+.||- -...+.|
T Consensus 118 ~~P-~y~~~~~~~l~~~f~~ia~a~~lP 144 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFGAIAAATEVP 144 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHCCSC
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466 448899999999996 4444433
No 9
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=49.52 E-value=5.2 Score=29.13 Aligned_cols=25 Identities=8% Similarity=-0.204 Sum_probs=17.4
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+||- .|.||+++|+.||- -...+.|
T Consensus 106 ~~P~-y~~~~~~~l~~~f~~va~a~~lP 132 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYDTIIAETGSN 132 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHhCCCC
Confidence 4554 48899999999996 4444433
No 10
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=49.47 E-value=6.1 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.7
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||-| |.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 102 VAGYY-NRPSQEGLYQHFK 119 (297)
T ss_dssp CCCTT-TCCCHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHH
Confidence 46644 7899999999996
No 11
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=49.11 E-value=6.6 Score=28.53 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=17.5
Q ss_pred CCCCceec-CChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQ-PSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~-PTDeELi~~yL--~Ki~g~~ 28 (101)
+||-| |. ||+++|+.||- -...+.|
T Consensus 98 ~~P~y-~~~~s~~~l~~~f~~va~a~~lP 125 (288)
T 2nuw_A 98 HSPYY-FPRLPEKFLAKYYEEIARISSHS 125 (288)
T ss_dssp CCCCS-SCSCCHHHHHHHHHHHHHHCCSC
T ss_pred cCCcC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 45644 77 99999999997 4444433
No 12
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=49.02 E-value=5.4 Score=29.01 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=14.5
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITPY-YNKPTQEGLRKHFG 119 (289)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 47899999999996
No 13
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=48.24 E-value=5.6 Score=28.95 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=17.6
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 102 ~~P-~y~~~s~~~l~~~f~~ia~a~~lP 128 (292)
T 2vc6_A 102 VSP-YYNKPTQEGIYQHFKAIDAASTIP 128 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHCSSC
T ss_pred cCC-CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 455 448899999999997 4444433
No 14
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=47.87 E-value=5.7 Score=29.14 Aligned_cols=18 Identities=11% Similarity=-0.335 Sum_probs=14.6
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 113 VTPF-YYPFSFEEHCDHYR 130 (303)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4554 48899999999996
No 15
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=47.63 E-value=7.2 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=14.4
Q ss_pred CCCCceec-CChHHHHHHHH
Q 037220 3 NLMGYKFQ-PSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~-PTDeELi~~yL 21 (101)
+||-| |. ||+++|+.||-
T Consensus 105 ~~P~y-~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 105 APPSY-FKNVSDDGLFAWFS 123 (294)
T ss_dssp CCCCS-SCSCCHHHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHH
Confidence 45544 77 99999999986
No 16
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=46.87 E-value=6.1 Score=29.04 Aligned_cols=18 Identities=11% Similarity=-0.070 Sum_probs=14.4
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 114 ~~P~-y~~~s~~~l~~~f~ 131 (306)
T 1o5k_A 114 VTPY-YNKPTQEGLYQHYK 131 (306)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999886
No 17
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=46.53 E-value=6.7 Score=28.89 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=16.3
Q ss_pred CCCCceecCChHHHHHHHH--HhhcC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLN 26 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g 26 (101)
+||- |.||+++|+.||- -...+
T Consensus 109 ~~P~--~~~s~~~l~~~f~~va~a~~ 132 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQATEAIG 132 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHHHHHHHC
T ss_pred CCCC--CCCCHHHHHHHHHHHHHhCC
Confidence 5664 5599999999997 44444
No 18
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=46.19 E-value=7.7 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=17.5
Q ss_pred CCCCceec-CChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQ-PSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~-PTDeELi~~yL--~Ki~g~~ 28 (101)
+||-| |. ||+++|+.||- -...+.|
T Consensus 97 ~~P~y-~~~~s~~~l~~~f~~va~a~~lP 124 (286)
T 2r91_A 97 LPPYY-FPRLSERQIAKYFRDLCSAVSIP 124 (286)
T ss_dssp CCSCS-STTCCHHHHHHHHHHHHHHCSSC
T ss_pred cCCcC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 45644 78 99999999997 4444433
No 19
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=46.07 E-value=7.8 Score=28.58 Aligned_cols=18 Identities=0% Similarity=-0.271 Sum_probs=14.7
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 113 HQPV-HPYITDAGAVEYYR 130 (314)
T ss_dssp CCCC-CSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999986
No 20
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=45.97 E-value=6.4 Score=29.16 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=17.5
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+||- .|.||+++|+.||- -...+.|
T Consensus 124 ~~P~-y~~~~~~~l~~~f~~va~a~~lP 150 (315)
T 3si9_A 124 VTPY-YNRPNQRGLYTHFSSIAKAISIP 150 (315)
T ss_dssp ECCC-SSCCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHcCCCC
Confidence 4564 47899999999987 4444433
No 21
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=45.72 E-value=8 Score=28.52 Aligned_cols=18 Identities=0% Similarity=-0.228 Sum_probs=14.9
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||-| +.||+++|+.||-
T Consensus 113 ~~P~y-~~~s~~~l~~~f~ 130 (316)
T 3e96_A 113 HMPIH-PYVTAGGVYAYFR 130 (316)
T ss_dssp CCCCC-SCCCHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHH
Confidence 46655 8899999999987
No 22
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=45.57 E-value=6.5 Score=28.80 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.6
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+|| |.|.||+++|+.||-
T Consensus 114 ~~P-~y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 114 VAP-YYNKPSQEGMYQHFK 131 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 456 448899999999886
No 23
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=45.46 E-value=6.6 Score=29.47 Aligned_cols=18 Identities=6% Similarity=-0.066 Sum_probs=14.5
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 133 ~~P~-Y~~~s~~~l~~~f~ 150 (343)
T 2v9d_A 133 INPY-YWKVSEANLIRYFE 150 (343)
T ss_dssp ECCS-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999986
No 24
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=44.98 E-value=6.8 Score=28.55 Aligned_cols=25 Identities=4% Similarity=-0.023 Sum_probs=17.4
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 104 ~~P-~y~~~~~~~l~~~f~~ia~a~~lP 130 (292)
T 3daq_A 104 ITP-YYNKTNQRGLVKHFEAIADAVKLP 130 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 345 457899999999987 4444444
No 25
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=44.37 E-value=7.4 Score=28.36 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=17.1
Q ss_pred CCCCceec-CChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQ-PSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~-PTDeELi~~yL--~Ki~g~~ 28 (101)
+||-| |. ||+++|+.||- -...+.|
T Consensus 98 ~~P~y-~~~~s~~~l~~~f~~va~a~~lP 125 (293)
T 1w3i_A 98 YAPYY-YPRMSEKHLVKYFKTLCEVSPHP 125 (293)
T ss_dssp ECCCS-CSSCCHHHHHHHHHHHHHHCSSC
T ss_pred cCCCC-CCCCCHHHHHHHHHHHHhhCCCC
Confidence 45544 77 99999999996 4444333
No 26
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=44.28 E-value=7 Score=28.58 Aligned_cols=25 Identities=8% Similarity=0.091 Sum_probs=17.1
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 110 ~~P-~y~~~s~~~l~~~f~~va~a~~lP 136 (301)
T 3m5v_A 110 VAP-YYNKPTQQGLYEHYKAIAQSVDIP 136 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHCSSC
T ss_pred cCC-CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 344 447899999999987 4444433
No 27
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=44.18 E-value=7.1 Score=28.83 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.3
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+|| |.|.||+++|+.||-
T Consensus 110 ~~P-~y~~~s~~~l~~~f~ 127 (311)
T 3h5d_A 110 IVP-YYNKPSQEGMYQHFK 127 (311)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 355 448899999999886
No 28
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=44.03 E-value=8.8 Score=28.35 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=17.4
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 126 ~~P-~y~~~s~~~l~~~f~~va~a~~lP 152 (315)
T 3na8_A 126 LPI-SYWKLNEAEVFQHYRAVGEAIGVP 152 (315)
T ss_dssp CCC-CSSCCCHHHHHHHHHHHHHHCSSC
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHhCCCc
Confidence 455 447899999999987 4444433
No 29
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=43.95 E-value=8.8 Score=28.59 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=14.6
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||-| +.||+++|+.||-
T Consensus 136 ~~P~Y-~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 136 APVSY-TPLTQEEAYHHFA 153 (332)
T ss_dssp CCCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 46644 7899999999986
No 30
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=43.19 E-value=5.4 Score=29.02 Aligned_cols=18 Identities=0% Similarity=-0.204 Sum_probs=13.7
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+||- .|.||+++|+.||-
T Consensus 103 ~~P~-y~~~s~~~l~~~f~ 120 (291)
T 3a5f_A 103 ITPY-YNKTTQKGLVKHFK 120 (291)
T ss_dssp ECCC-SSCCCHHHHHHHC-
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4554 47899999999886
No 31
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=42.80 E-value=9.2 Score=28.13 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=18.3
Q ss_pred CCCCce--ecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYK--FQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~r--F~PTDeELi~~yL--~Ki~g~~ 28 (101)
+||-|- |.||+++|+.||- -...+.|
T Consensus 110 ~~Pyy~~~~~~s~~~l~~~f~~va~a~~lP 139 (309)
T 3fkr_A 110 MPPYHGATFRVPEAQIFEFYARVSDAIAIP 139 (309)
T ss_dssp CCSCBTTTBCCCHHHHHHHHHHHHHHCSSC
T ss_pred cCCCCccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 566442 8999999999987 4444444
No 32
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=42.44 E-value=7.8 Score=28.45 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=14.2
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+|| |.|.||+++|+.||-
T Consensus 117 ~~P-~y~~~s~~~l~~~f~ 134 (304)
T 3l21_A 117 VTP-YYSKPPQRGLQAHFT 134 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 344 457899999999886
No 33
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=42.34 E-value=7.9 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=17.4
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 109 ~~P-~y~~~~~~~l~~~f~~va~a~~lP 135 (297)
T 3flu_A 109 VVP-YYNKPSQEGIYQHFKTIAEATSIP 135 (297)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHCCSC
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 355 457899999999986 4444433
No 34
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=42.01 E-value=8 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=17.1
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 103 ~~P-~y~~~~~~~l~~~f~~ia~a~~lP 129 (291)
T 3tak_A 103 VTP-YYNKPTQEGLYQHYKAIAEAVELP 129 (291)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHCCSC
T ss_pred cCC-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 355 447899999999886 4444433
No 35
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=41.56 E-value=8.2 Score=28.51 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=17.3
Q ss_pred CCCCceecCChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
+|| |.|.||+++|+.||- -...+.|
T Consensus 125 ~~P-~y~~~s~~~l~~~f~~va~a~~lP 151 (314)
T 3qze_A 125 VTP-YYNKPTQEGMYQHFRHIAEAVAIP 151 (314)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHHHSCSC
T ss_pred cCC-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 355 447899999999987 4444433
No 36
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=39.82 E-value=19 Score=21.74 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=14.4
Q ss_pred ceecCChHHHHHHHHHhhcCC
Q 037220 7 YKFQPSNEQILYLMVEKRLNP 27 (101)
Q Consensus 7 ~rF~PTDeELi~~yL~Ki~g~ 27 (101)
+.|-||+++ |..||.||.+.
T Consensus 2 ~~~~p~~~~-i~~~l~ki~~~ 21 (77)
T 3vdj_A 2 VEFEPSDKH-IKEYLNKIQNS 21 (77)
T ss_dssp CCCSCCHHH-HHHHHHHHTTT
T ss_pred ccccccHHH-HHHHHHHHhcc
Confidence 357888765 55699888774
No 37
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=38.71 E-value=7.3 Score=28.23 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=14.4
Q ss_pred CCCCceecC-ChHHHHHHHH
Q 037220 3 NLMGYKFQP-SNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~P-TDeELi~~yL 21 (101)
+||- .|.| |+++|+.||-
T Consensus 95 ~~P~-y~~~~~~~~l~~~f~ 113 (283)
T 2pcq_A 95 TPPR-YYHGSLGAGLLRYYE 113 (283)
T ss_dssp CCCC-TTGGGTTTHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHH
Confidence 4664 4789 9999999885
No 38
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=38.02 E-value=9.1 Score=29.18 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=14.9
Q ss_pred CCCCceecCChHHHHHHHH
Q 037220 3 NLMGYKFQPSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~PTDeELi~~yL 21 (101)
+|| |.+.||+++|+.||-
T Consensus 161 v~P-yY~k~sq~gl~~hf~ 178 (360)
T 4dpp_A 161 INP-YYGKTSIEGLIAHFQ 178 (360)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 466 568899999999886
No 39
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=38.00 E-value=17 Score=26.14 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=15.9
Q ss_pred CCCceecCChHHHHHHHH-Hhhc
Q 037220 4 LMGYKFQPSNEQILYLMV-EKRL 25 (101)
Q Consensus 4 ppG~rF~PTDeELi~~yL-~Ki~ 25 (101)
+-|..+.||++|+|-|=. +++.
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 348999999999999877 6544
No 40
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=34.56 E-value=15 Score=27.56 Aligned_cols=18 Identities=0% Similarity=-0.464 Sum_probs=14.2
Q ss_pred CCCCceec-CChHHHHHHHH
Q 037220 3 NLMGYKFQ-PSNEQILYLMV 21 (101)
Q Consensus 3 lppG~rF~-PTDeELi~~yL 21 (101)
+||- .|. ||+++|+.||-
T Consensus 125 ~~P~-y~~~~s~~~l~~~f~ 143 (344)
T 2hmc_A 125 IPRV-LSRGSVIAAQKAHFK 143 (344)
T ss_dssp CCCC-SSSTTCHHHHHHHHH
T ss_pred CCCc-cCCCCCHHHHHHHHH
Confidence 4554 477 89999999886
No 41
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=33.21 E-value=27 Score=21.60 Aligned_cols=20 Identities=5% Similarity=0.245 Sum_probs=12.0
Q ss_pred cCChHHHHHHHHHhhcCCCC
Q 037220 10 QPSNEQILYLMVEKRLNPHF 29 (101)
Q Consensus 10 ~PTDeELi~~yL~Ki~g~~~ 29 (101)
-||.+|||.|.|.|..-.++
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~ 81 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPL 81 (87)
T ss_dssp CCSHHHHHHHHHHHHC----
T ss_pred CCChHHHHHHHHHHhhcCCc
Confidence 37889999988844444444
No 42
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=25.79 E-value=34 Score=15.49 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=8.9
Q ss_pred CChHHHHHHHH
Q 037220 11 PSNEQILYLMV 21 (101)
Q Consensus 11 PTDeELi~~yL 21 (101)
+.|.+|+.|.|
T Consensus 3 ~kdhqllryll 13 (21)
T 3dct_B 3 SKDHQLLRYLL 13 (26)
T ss_pred hhHHHHHHHHH
Confidence 67899998766
No 43
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=24.89 E-value=30 Score=25.48 Aligned_cols=25 Identities=12% Similarity=-0.018 Sum_probs=15.4
Q ss_pred CCCCceec--CChHHHHHHHH--HhhcCCC
Q 037220 3 NLMGYKFQ--PSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 3 lppG~rF~--PTDeELi~~yL--~Ki~g~~ 28 (101)
+||-| |. +|+++|+.||- -...+.|
T Consensus 113 ~~P~y-~~kp~~~~~l~~~f~~ia~a~~lP 141 (318)
T 3qfe_A 113 LPPAY-FGKATTPPVIKSFFDDVSCQSPLP 141 (318)
T ss_dssp CCCCC----CCCHHHHHHHHHHHHHHCSSC
T ss_pred eCCcc-cCCCCCHHHHHHHHHHHHhhCCCC
Confidence 46644 43 58999999997 4444433
No 44
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=21.83 E-value=67 Score=21.50 Aligned_cols=33 Identities=3% Similarity=-0.043 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCCce--eccCCCCCCccC
Q 037220 12 SNEQILYLMVEKRLNPHFSHHPIK--DIVDICSLEPGD 47 (101)
Q Consensus 12 TDeELi~~yL~Ki~g~~~~~~~I~--e~~Dvy~~~Pw~ 47 (101)
|.++-|..||.. ...||..+|+ ++ +--+.+|.+
T Consensus 4 t~~~~V~~yl~~--~~~LP~~yiTK~eA-~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT--YHKLPDNYITKSEA-QALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH--HSSCCTTEECHHHH-HHTTCCGGG
T ss_pred cchhHHHHHHHH--hCcCCcccccHHHH-HHcCCCCCc
Confidence 455566678844 3467776664 44 556777754
No 45
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}
Probab=21.70 E-value=69 Score=20.77 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=15.8
Q ss_pred cCChHHHHHHHHHhhcCCCC
Q 037220 10 QPSNEQILYLMVEKRLNPHF 29 (101)
Q Consensus 10 ~PTDeELi~~yL~Ki~g~~~ 29 (101)
-||=.|||.||-....|...
T Consensus 86 F~SL~eLV~yY~~~adGl~~ 105 (125)
T 3maz_A 86 LPNLFSVIDYFVKETRGNLR 105 (125)
T ss_dssp ESSHHHHHHHHHHHTTTCCC
T ss_pred cCCHHHHHHHHHhCCCcCcc
Confidence 47899999999977777543
No 46
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.15 E-value=38 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=16.5
Q ss_pred CCCceecCChHHHHHHHH--HhhcCCC
Q 037220 4 LMGYKFQPSNEQILYLMV--EKRLNPH 28 (101)
Q Consensus 4 ppG~rF~PTDeELi~~yL--~Ki~g~~ 28 (101)
|| |.|.||+++|+.||- -...+.|
T Consensus 107 ~P-~y~~~~~~~l~~~f~~va~a~~lP 132 (300)
T 3eb2_A 107 LE-AYFPLKDAQIESYFRAIADAVEIP 132 (300)
T ss_dssp EC-CSSCCCHHHHHHHHHHHHHHCSSC
T ss_pred CC-CCCCCCHHHHHHHHHHHHHHCCCC
Confidence 44 346799999999886 4444433
No 47
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=20.72 E-value=47 Score=15.79 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=8.5
Q ss_pred CCCCCCccCcccc
Q 037220 39 DICSLEPGDLATA 51 (101)
Q Consensus 39 Dvy~~~Pw~L~~~ 51 (101)
|||.++|..-.++
T Consensus 1 nIynCE~a~pse~ 13 (25)
T 3pp4_P 1 NIYNCEPANPSEK 13 (26)
T ss_dssp -CCCCSCSSGGGT
T ss_pred CccccccCCcccc
Confidence 6899999655443
No 48
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=20.53 E-value=88 Score=18.86 Aligned_cols=17 Identities=12% Similarity=-0.240 Sum_probs=13.3
Q ss_pred ecCChHHHHHHHH-Hhhc
Q 037220 9 FQPSNEQILYLMV-EKRL 25 (101)
Q Consensus 9 F~PTDeELi~~yL-~Ki~ 25 (101)
-.+|=.|||.||- ..+.
T Consensus 82 ~F~sl~~LV~~y~~~~l~ 99 (109)
T 1ju5_A 82 EFDSLPALLEFYKIHYLD 99 (109)
T ss_dssp EESSHHHHHHHHHHSCSS
T ss_pred ccCCHHHHHHHHhhCCCC
Confidence 3689999999998 5443
Done!