BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037221
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 217/458 (47%), Gaps = 128/458 (27%)
Query: 1 MLQLAKLPHHHKGFHITFVNFENK-----KNMASQALD---------------------- 33
+ +LAKL H +GFHITFVN E K+ +A D
Sbjct: 25 LFKLAKL-LHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGD 83
Query: 34 -------LKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVV 86
L S ++ + +N + N P V+C++SD M FTI+AA++ L V
Sbjct: 84 VSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNV 143
Query: 87 MFLTISACSFM-----------------------------------GYKQFRT------- 104
++ + SACS + G K FR
Sbjct: 144 LYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFI 203
Query: 105 ------------LKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLY 152
E +K + I+ +TF+ LE V++A+S+ P+++ IGPL LL
Sbjct: 204 RTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLK 263
Query: 153 Q------------NLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS 200
Q NLWK++TECL WL+SK P SV+YVNFG V+ +Q +E A GLAN
Sbjct: 264 QTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANC 323
Query: 201 NHPFLWIIRPDLF-------------------------PQEEVLNHPSIGGFLTHSGWGS 235
FLWIIRPDL PQ++VLNHPSIGGFLTH GW S
Sbjct: 324 KKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNS 383
Query: 236 TIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295
T E++ AGVPM+CWPF DQ T+CR+ E IGMEI D + R + K + E++ G+K
Sbjct: 384 TTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI--DTNVKREELAKLINEVIAGDK 441
Query: 296 GKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333
GK+M+ KA E KK E P G S NL K++ + LL
Sbjct: 442 GKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLL 479
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 128/255 (50%), Gaps = 44/255 (17%)
Query: 114 KASGIIFHTFDALEVQVLDAISAMF---PNLFTIGPLQLLLYQNLWK-KETECLRWLDSK 169
+A GI+ +TF LE + A+ P ++ +GPL + Q + +E+ECL+WLD++
Sbjct: 206 EAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQ 265
Query: 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIR-------------------- 209
SV+YV+FG + +Q E+A+GLA+S FLW+IR
Sbjct: 266 PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPL 325
Query: 210 ------------------PDLFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPF 251
P PQ +VL HPS GGFLTH GW ST+E++ +G+P+I WP
Sbjct: 326 TFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPL 385
Query: 252 EGDQMTNCRYTYKERGIGMEINGDEDGI--RNVIQKSVRELLEGEKGKQMRNKASEWKKL 309
+Q N ++ + +DG+ R + + V+ L+EGE+GK +RNK E K+
Sbjct: 386 YAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEA 445
Query: 310 VVEAAAPDGPSSKNL 324
DG S+K L
Sbjct: 446 ACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 156/362 (43%), Gaps = 76/362 (20%)
Query: 46 NRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSF--------- 96
+ ++ V + G VSC+++D F+ F + A ++G++ + F T S
Sbjct: 99 RQGMVMAVAETGR--PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEI 156
Query: 97 ----------------------MGYKQFRTLKEK-----------------GLVASKASG 117
M +FR L+E G V KA+
Sbjct: 157 REKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATA 216
Query: 118 IIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYV 177
+ ++F+ L+ + + + + IGP L+ + T CL+WL + P SV+Y+
Sbjct: 217 VFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYI 276
Query: 178 NFGIAIVVKKQQFIEVAMGLANSNHPFLWIIR-------PDLF--------------PQE 216
+FG + + ++ L S PF+W +R P+ F PQ
Sbjct: 277 SFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQA 336
Query: 217 EVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDE 276
EVL H ++G F+TH GW S E+++ GVP+IC PF GDQ N R IG+ I G
Sbjct: 337 EVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEG-- 394
Query: 277 DGI--RNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334
G+ ++ + ++L EKGK++R ++ A P G S++N + LV+ P
Sbjct: 395 -GVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSKP 453
Query: 335 KE 336
K+
Sbjct: 454 KD 455
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 26/247 (10%)
Query: 105 LKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLR 164
L + GL +A+ + ++F + + + +++ F L +GP L Q E CL
Sbjct: 206 LHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLE 265
Query: 165 WLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD------------- 211
WLD +SV+Y++FG + + +A L PF+W R D
Sbjct: 266 WLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERT 325
Query: 212 --------LFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTY 263
PQ E+L H S+G FLTHSGW S +E + GVPMI PF GDQ N T
Sbjct: 326 KTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTE 385
Query: 264 KERGIGMEINGDEDGI--RNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSS 321
IG+ G ++G+ + I+K++ + EKG MR K + K+ +A +G S+
Sbjct: 386 SVLEIGV---GVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSA 442
Query: 322 KNLVKLV 328
+ L+
Sbjct: 443 MDFTTLI 449
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 127/268 (47%), Gaps = 40/268 (14%)
Query: 98 GYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAI---SAMFPNLFTIGPLQLLLYQN 154
GY + L E+ GII +TF LE +DA+ P ++ +GPL L Q
Sbjct: 198 GYIAYYKLAER---FRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQP 254
Query: 155 LWKKETE----CLRWLDSKLPNSVIYVNFG-IAIVVKKQQFIEVAMGLANSNHPFLWI-- 207
K + L+WLD + SV+++ FG + + Q E+A+GL +S FLW
Sbjct: 255 NPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNS 314
Query: 208 ----IRPDLF----------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMI 247
+ P+ F PQ EVL H +IGGF++H GW S +E++ GVP++
Sbjct: 315 AEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
Query: 248 CWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNV-----IQKSVRELLEGEKGKQMRNK 302
WP +Q N KE G+G+ + D +V I+K +++L+ +K + K
Sbjct: 375 TWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKK 432
Query: 303 ASEWKKLVVEAAAPDGPSSKNLVKLVNE 330
E K++ A G S ++ KL+++
Sbjct: 433 VQEMKEMSRNAVVDGGSSLISVGKLIDD 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 127/268 (47%), Gaps = 40/268 (14%)
Query: 98 GYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAI---SAMFPNLFTIGPLQLLLYQN 154
GY + L E+ GII +TF LE +DA+ P ++ +GPL L Q
Sbjct: 198 GYIAYYKLAER---FRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQP 254
Query: 155 LWKKETE----CLRWLDSKLPNSVIYVNFG-IAIVVKKQQFIEVAMGLANSNHPFLWI-- 207
K + L+WLD + SV+++ FG + + Q E+A+GL +S FLW
Sbjct: 255 NPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNS 314
Query: 208 ----IRPDLF----------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMI 247
+ P+ F PQ EVL H +IGGF++H GW S +E++ GVP++
Sbjct: 315 AEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
Query: 248 CWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNV-----IQKSVRELLEGEKGKQMRNK 302
WP +Q N KE G+G+ + D +V I+K +++L+ +K + K
Sbjct: 375 TWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKK 432
Query: 303 ASEWKKLVVEAAAPDGPSSKNLVKLVNE 330
E K++ A G S ++ KL+++
Sbjct: 433 VQEMKEMSRNAVVDGGSSLISVGKLIDD 460
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEV-AMGLANSNHPFLWII---RPDLF--- 213
E ++ S N V+ + G + ++ V A LA LW +PD
Sbjct: 10 EXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKPDTLGLN 69
Query: 214 -------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKER 266
PQ ++L HP F+TH G E + G+P + P DQ N + K R
Sbjct: 70 TRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHX-KAR 128
Query: 267 GIGMEIN 273
G + ++
Sbjct: 129 GAAVRVD 135
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEIN 273
PQ ++L S F+TH+G GST+E LS VPM+ P +Q N E G+G I
Sbjct: 314 PQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGLGRHIP 370
Query: 274 GDE 276
D+
Sbjct: 371 RDQ 373
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 222 PSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRN 281
P+ + H G G+T+ LS GVP + P + + R + G G+E+ ++ G+ +
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEVPWEQAGVES 356
Query: 282 VIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNES 331
V+ R + R A+E L P+ ++V+L+ ++
Sbjct: 357 VLAACARIRDDSSYVGNARRLAAEXATL---------PTPADIVRLIEQA 397
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 222 PSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRN 281
P+ + H G G+T+ LS GVP + P + + R + G G+E+ ++ G+ +
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEVPWEQAGVES 357
Query: 282 VIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNES 331
V+ R + R A+E L P+ ++V+L+ ++
Sbjct: 358 VLAACARIRDDSSYVGNARRLAAEXATL---------PTPADIVRLIEQA 398
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 211 DLFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNC 259
D PQ +L + F+TH+G G + E L+ PMI P DQ N
Sbjct: 289 DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 206 WIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQ 255
W+ + L P +++ H H G G+T+ L AGVP + +P+ GD
Sbjct: 299 WVPQAALLPHVDLVVH--------HGGSGTTLGALGAGVPQLSFPWAGDS 340
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 230 HSGWGSTIENLSAGVPMICWPFEGDQMTN-CRYTYKERGIGMEINGDEDGIRNVIQKSVR 288
H G G+ + + AG+P + P DQ + R RGIG+ D+ V +R
Sbjct: 306 HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDK-----VDADLLR 360
Query: 289 ELLEGEKGKQMRNKASEWKKLVVEAAAP 316
L+ E +R A E ++ +V P
Sbjct: 361 RLIGDES---LRTAAREVREEMVALPTP 385
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 230 HSGWGSTIENLSAGVPMICWPFEGDQMTN-CRYTYKERGIGMEINGDEDGIRNVIQKSVR 288
H G G+ + AG+P + P DQ + R RGIG+ D+ V +R
Sbjct: 306 HGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDK-----VDADLLR 360
Query: 289 ELLEGEKGKQMRNKASEWKKLVVEAAAP 316
L+ E +R A E ++ V P
Sbjct: 361 RLIGDES---LRTAAREVREEXVALPTP 385
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 228 LTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287
LTH G+ +E +AGVP++ P + E G+G + D+ + S+
Sbjct: 302 LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQ-----LEPASI 356
Query: 288 RELLE 292
RE +E
Sbjct: 357 REAVE 361
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 129 QVLDAISAMFPNLFTI--GPLQL-----LLYQNLWKKETECLRWLDSKLPNSVIYVNFGI 181
Q +DA+ P+ +TI P+ L L ++K +EC+ ++ N +Y G
Sbjct: 37 QPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGD 96
Query: 182 AIVVKKQQFIEVAM 195
IVV Q ++ M
Sbjct: 97 DIVVMAQALEKLFM 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,090,244
Number of Sequences: 62578
Number of extensions: 395196
Number of successful extensions: 1011
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 22
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)