Query 037221
Match_columns 342
No_of_seqs 184 out of 1636
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.7E-54 3.6E-59 413.4 34.7 329 1-333 24-450 (451)
2 PLN02210 UDP-glucosyl transfer 100.0 2.3E-53 5E-58 406.8 33.4 321 1-332 25-454 (456)
3 PLN02555 limonoid glucosyltran 100.0 1.2E-52 2.6E-57 402.3 34.0 332 1-338 24-474 (480)
4 PLN02173 UDP-glucosyl transfer 100.0 2.2E-52 4.8E-57 397.3 34.0 323 1-332 22-447 (449)
5 PLN02992 coniferyl-alcohol glu 100.0 1.1E-52 2.4E-57 401.7 31.8 323 1-333 22-469 (481)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.7E-52 3.7E-57 402.2 32.0 325 1-335 26-473 (477)
7 PLN00164 glucosyltransferase; 100.0 6.8E-52 1.5E-56 399.1 34.1 327 1-335 20-475 (480)
8 PLN02534 UDP-glycosyltransfera 100.0 5.2E-52 1.1E-56 398.4 32.7 327 1-335 25-488 (491)
9 PLN02562 UDP-glycosyltransfera 100.0 5.7E-52 1.2E-56 396.8 32.6 321 1-332 23-448 (448)
10 PLN02670 transferase, transfer 100.0 1.2E-51 2.5E-56 394.2 32.0 320 1-335 23-467 (472)
11 PLN02448 UDP-glycosyltransfera 100.0 1.6E-51 3.5E-56 396.1 33.1 326 1-334 27-458 (459)
12 PLN03007 UDP-glucosyltransfera 100.0 3.4E-51 7.5E-56 395.8 32.5 327 1-333 22-480 (482)
13 PLN02207 UDP-glycosyltransfera 100.0 3.7E-51 8E-56 390.4 32.2 329 1-333 20-465 (468)
14 PLN02208 glycosyltransferase f 100.0 3.6E-51 7.8E-56 389.5 31.5 316 1-333 21-439 (442)
15 PLN03015 UDP-glucosyl transfer 100.0 7.7E-51 1.7E-55 387.0 32.5 321 1-331 20-466 (470)
16 PLN02554 UDP-glycosyltransfera 100.0 9.8E-51 2.1E-55 392.2 32.0 328 1-334 19-479 (481)
17 PLN02152 indole-3-acetate beta 100.0 1.4E-50 3.1E-55 385.5 32.5 324 1-332 20-455 (455)
18 PLN02764 glycosyltransferase f 100.0 1.8E-50 4E-55 383.2 32.9 320 1-336 22-448 (453)
19 PLN00414 glycosyltransferase f 100.0 2.6E-50 5.6E-55 384.1 32.3 327 1-338 21-445 (446)
20 PLN02167 UDP-glycosyltransfera 100.0 2.5E-49 5.4E-54 381.8 33.5 290 41-334 95-473 (475)
21 PLN03004 UDP-glycosyltransfera 100.0 1.1E-49 2.5E-54 378.9 28.6 274 41-322 95-450 (451)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.5E-41 3.2E-46 329.5 29.0 261 59-335 134-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-44 2.9E-49 354.0 0.8 259 60-335 118-445 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2.2E-35 4.8E-40 280.4 25.8 304 1-331 12-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4E-34 8.6E-39 272.5 20.9 306 1-330 17-400 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 2.7E-33 5.8E-38 274.0 23.7 313 1-333 22-455 (496)
27 COG1819 Glycosyl transferases, 100.0 2.5E-31 5.3E-36 251.6 15.5 152 170-335 235-402 (406)
28 PRK12446 undecaprenyldiphospho 99.9 2.3E-21 5E-26 181.0 21.3 270 2-305 19-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.8 1.2E-20 2.5E-25 174.3 14.2 249 2-290 19-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.8 1E-16 2.2E-21 148.8 20.8 257 2-295 18-326 (357)
31 TIGR00661 MJ1255 conserved hyp 99.7 1.2E-16 2.5E-21 147.9 19.6 253 2-295 18-316 (321)
32 PRK00726 murG undecaprenyldiph 99.7 2.2E-14 4.7E-19 134.7 21.5 274 2-311 19-339 (357)
33 cd03785 GT1_MurG MurG is an N- 99.6 1.1E-13 2.3E-18 129.4 21.7 263 2-295 17-326 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.5 2.7E-13 5.9E-18 128.4 17.1 300 3-328 23-383 (385)
35 TIGR01133 murG undecaprenyldip 99.5 1.3E-12 2.8E-17 122.0 20.2 77 214-295 243-323 (348)
36 TIGR03492 conserved hypothetic 99.4 2.5E-11 5.5E-16 115.2 20.6 266 2-295 14-366 (396)
37 PLN02605 monogalactosyldiacylg 99.4 2.3E-10 4.9E-15 108.5 25.3 212 60-295 99-350 (382)
38 PF04101 Glyco_tran_28_C: Glyc 99.4 1.7E-14 3.6E-19 120.8 -2.8 77 214-295 65-146 (167)
39 PRK13608 diacylglycerol glucos 99.4 9.7E-11 2.1E-15 111.4 22.0 209 60-295 103-340 (391)
40 TIGR03590 PseG pseudaminic aci 99.4 1.9E-11 4.1E-16 110.7 15.9 223 2-261 21-278 (279)
41 PRK13609 diacylglycerol glucos 99.3 4.5E-10 9.8E-15 106.3 22.8 208 60-295 103-340 (380)
42 COG4671 Predicted glycosyl tra 99.2 2.3E-09 4.9E-14 96.4 18.1 118 171-294 218-366 (400)
43 cd03814 GT1_like_2 This family 99.1 2.9E-08 6.4E-13 92.0 25.0 269 2-295 21-334 (364)
44 PRK00025 lpxB lipid-A-disaccha 99.1 8.7E-09 1.9E-13 97.5 17.4 76 214-295 254-343 (380)
45 PLN02871 UDP-sulfoquinovose:DA 99.0 5.1E-07 1.1E-11 87.9 25.8 269 2-295 81-402 (465)
46 COG3980 spsG Spore coat polysa 98.9 4.3E-08 9.4E-13 85.7 12.5 254 2-308 22-305 (318)
47 cd03800 GT1_Sucrose_synthase T 98.9 2E-06 4.3E-11 81.3 25.0 278 2-295 28-370 (398)
48 cd03808 GT1_cap1E_like This fa 98.8 4.6E-06 1E-10 76.6 24.1 265 2-295 17-331 (359)
49 TIGR00236 wecB UDP-N-acetylglu 98.8 1.6E-07 3.5E-12 88.4 14.6 75 215-304 268-342 (365)
50 PF04007 DUF354: Protein of un 98.8 1.8E-06 4E-11 79.6 20.7 256 3-291 18-308 (335)
51 cd03823 GT1_ExpE7_like This fa 98.8 7.9E-06 1.7E-10 75.4 25.2 253 2-295 22-331 (359)
52 cd03801 GT1_YqgM_like This fam 98.7 1.1E-05 2.4E-10 74.1 25.3 268 2-295 21-343 (374)
53 cd03820 GT1_amsD_like This fam 98.7 5.7E-06 1.2E-10 75.6 23.3 266 2-305 20-328 (348)
54 PRK05749 3-deoxy-D-manno-octul 98.7 9.1E-06 2E-10 78.2 25.4 74 215-295 313-390 (425)
55 cd04962 GT1_like_5 This family 98.7 5.5E-06 1.2E-10 77.6 23.0 82 214-305 263-349 (371)
56 cd03798 GT1_wlbH_like This fam 98.7 2.4E-05 5.2E-10 72.1 26.7 269 2-295 21-346 (377)
57 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 2E-07 4.3E-12 87.5 12.4 268 2-295 16-339 (363)
58 cd03817 GT1_UGDG_like This fam 98.7 1.3E-05 2.9E-10 74.1 23.4 268 2-295 21-345 (374)
59 cd03794 GT1_wbuB_like This fam 98.6 2E-05 4.2E-10 73.3 23.3 71 215-295 288-367 (394)
60 PF02350 Epimerase_2: UDP-N-ac 98.6 3.2E-07 7E-12 85.6 11.0 228 41-295 54-320 (346)
61 PRK14089 ipid-A-disaccharide s 98.6 1.5E-06 3.3E-11 80.8 15.0 214 60-310 75-332 (347)
62 cd03819 GT1_WavL_like This fam 98.6 4.2E-05 9.2E-10 71.0 24.8 265 2-295 17-333 (355)
63 cd03799 GT1_amsK_like This is 98.5 4.3E-05 9.4E-10 70.8 22.9 71 215-295 249-329 (355)
64 cd03811 GT1_WabH_like This fam 98.5 6.1E-05 1.3E-09 68.8 23.4 266 2-295 19-334 (353)
65 TIGR03449 mycothiol_MshA UDP-N 98.5 0.00012 2.5E-09 69.8 24.9 70 216-295 297-370 (405)
66 cd03822 GT1_ecORF704_like This 98.5 0.00014 3.1E-09 67.3 24.6 69 216-295 262-336 (366)
67 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.00012 2.6E-09 68.3 22.9 266 2-295 66-388 (419)
68 cd03816 GT1_ALG1_like This fam 98.4 0.00013 2.7E-09 70.1 23.9 81 215-307 308-399 (415)
69 cd03821 GT1_Bme6_like This fam 98.4 0.00016 3.5E-09 66.8 23.8 69 215-295 275-347 (375)
70 cd03795 GT1_like_4 This family 98.4 5E-05 1.1E-09 70.4 20.3 272 2-295 21-334 (357)
71 cd04951 GT1_WbdM_like This fam 98.4 0.00018 3.8E-09 66.8 23.8 84 214-311 255-342 (360)
72 cd03807 GT1_WbnK_like This fam 98.4 0.00032 7E-09 64.5 25.2 70 214-295 261-334 (365)
73 cd03818 GT1_ExpC_like This fam 98.4 5.1E-05 1.1E-09 72.3 20.1 69 217-295 296-368 (396)
74 PRK09922 UDP-D-galactose:(gluc 98.4 0.0002 4.3E-09 67.3 23.7 82 218-309 254-343 (359)
75 PRK10307 putative glycosyl tra 98.4 0.00045 9.8E-09 66.1 26.6 82 216-305 298-386 (412)
76 TIGR03088 stp2 sugar transfera 98.4 0.00013 2.9E-09 68.6 22.5 72 214-295 265-340 (374)
77 cd03812 GT1_CapH_like This fam 98.4 0.00011 2.5E-09 68.2 21.5 71 214-295 259-333 (358)
78 cd03796 GT1_PIG-A_like This fa 98.3 0.00016 3.6E-09 68.8 22.0 69 214-294 262-334 (398)
79 cd03805 GT1_ALG2_like This fam 98.3 0.00036 7.8E-09 66.0 23.4 69 216-295 294-366 (392)
80 cd03809 GT1_mtfB_like This fam 98.3 0.00012 2.6E-09 67.8 19.0 273 2-308 22-348 (365)
81 cd03825 GT1_wcfI_like This fam 98.3 0.00029 6.3E-09 65.5 21.7 70 216-295 259-332 (365)
82 KOG3349 Predicted glycosyltran 98.2 4.5E-06 9.8E-11 66.3 7.3 57 214-273 73-133 (170)
83 PF02684 LpxB: Lipid-A-disacch 98.2 0.0001 2.2E-09 69.1 17.0 251 41-320 66-364 (373)
84 TIGR02472 sucr_P_syn_N sucrose 98.2 0.00091 2E-08 64.7 23.3 61 227-295 344-408 (439)
85 cd05844 GT1_like_7 Glycosyltra 98.1 0.00045 9.7E-09 64.5 19.9 71 215-295 258-338 (367)
86 TIGR02468 sucrsPsyn_pln sucros 98.0 0.0026 5.6E-08 66.6 24.0 71 227-305 575-650 (1050)
87 cd03802 GT1_AviGT4_like This f 98.0 0.0014 3E-08 60.3 19.6 66 216-293 238-308 (335)
88 PLN02846 digalactosyldiacylgly 98.0 0.00062 1.3E-08 65.7 17.5 68 214-294 293-364 (462)
89 PRK01021 lpxB lipid-A-disaccha 97.9 0.00064 1.4E-08 66.9 17.2 245 44-311 297-590 (608)
90 cd03792 GT1_Trehalose_phosphor 97.9 0.0056 1.2E-07 57.7 22.8 69 215-295 267-339 (372)
91 TIGR03568 NeuC_NnaA UDP-N-acet 97.9 0.0003 6.5E-09 66.3 14.1 220 41-292 80-338 (365)
92 cd04955 GT1_like_6 This family 97.9 0.0053 1.1E-07 57.0 22.5 65 217-295 263-332 (363)
93 PF03033 Glyco_transf_28: Glyc 97.9 5.3E-06 1.2E-10 66.7 1.4 94 1-95 15-134 (139)
94 COG5017 Uncharacterized conser 97.7 0.00059 1.3E-08 53.5 10.3 58 214-274 58-123 (161)
95 COG0381 WecB UDP-N-acetylgluco 97.6 0.0039 8.4E-08 57.9 15.6 255 41-332 79-372 (383)
96 COG0763 LpxB Lipid A disacchar 97.6 0.0049 1.1E-07 57.2 15.8 263 41-331 69-379 (381)
97 cd03804 GT1_wbaZ_like This fam 97.5 0.004 8.6E-08 58.0 15.7 108 175-294 197-327 (351)
98 cd03806 GT1_ALG11_like This fa 97.4 0.063 1.4E-06 51.6 22.8 70 215-295 318-394 (419)
99 cd04946 GT1_AmsK_like This fam 97.4 0.045 9.8E-07 52.4 21.4 72 217-295 304-379 (407)
100 cd04949 GT1_gtfA_like This fam 97.4 0.014 3E-07 54.8 17.6 88 214-308 271-361 (372)
101 TIGR02470 sucr_synth sucrose s 97.4 0.17 3.8E-06 52.0 26.1 51 233-291 657-707 (784)
102 TIGR03087 stp1 sugar transfera 97.4 0.049 1.1E-06 51.8 21.3 70 214-295 290-364 (397)
103 PLN00142 sucrose synthase 97.4 0.046 1E-06 56.2 21.8 61 227-295 670-738 (815)
104 TIGR02918 accessory Sec system 97.4 0.03 6.5E-07 55.1 20.1 92 214-311 385-485 (500)
105 PRK15179 Vi polysaccharide bio 97.4 0.087 1.9E-06 53.7 23.8 83 214-305 584-672 (694)
106 cd03813 GT1_like_3 This family 97.3 0.084 1.8E-06 51.6 21.7 72 214-295 363-444 (475)
107 PRK10017 colanic acid biosynth 97.2 0.13 2.9E-06 49.4 21.8 99 217-332 323-423 (426)
108 PRK00654 glgA glycogen synthas 97.2 0.075 1.6E-06 51.8 20.3 70 217-292 352-427 (466)
109 PF13844 Glyco_transf_41: Glyc 97.2 0.0036 7.8E-08 60.2 10.7 119 170-295 282-432 (468)
110 PRK15484 lipopolysaccharide 1, 97.0 0.03 6.5E-07 53.0 15.0 72 215-295 270-346 (380)
111 TIGR02149 glgA_Coryne glycogen 97.0 0.033 7.2E-07 52.4 15.3 74 215-295 274-354 (388)
112 PF00534 Glycos_transf_1: Glyc 96.9 0.011 2.4E-07 48.9 10.3 72 214-295 85-160 (172)
113 PLN02275 transferase, transfer 96.7 0.066 1.4E-06 50.5 15.1 64 216-291 301-371 (371)
114 PRK15490 Vi polysaccharide bio 96.6 0.54 1.2E-05 46.6 20.4 64 214-287 465-532 (578)
115 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.098 2.1E-06 48.1 14.6 85 187-274 195-282 (311)
116 PRK15427 colanic acid biosynth 96.6 0.075 1.6E-06 50.9 14.6 70 216-295 293-373 (406)
117 cd04950 GT1_like_1 Glycosyltra 96.4 0.44 9.5E-06 44.9 18.8 69 215-295 267-342 (373)
118 PRK09814 beta-1,6-galactofuran 96.4 0.013 2.9E-07 54.4 8.2 79 236-329 253-331 (333)
119 cd01635 Glycosyltransferase_GT 96.4 0.08 1.7E-06 45.1 12.3 37 215-253 175-215 (229)
120 PLN02501 digalactosyldiacylgly 96.2 0.61 1.3E-05 47.3 18.7 68 215-295 612-683 (794)
121 PLN02316 synthase/transferase 96.1 1.3 2.8E-05 47.1 21.6 71 217-293 915-998 (1036)
122 COG1817 Uncharacterized protei 95.8 1.4 3.1E-05 39.9 17.8 219 3-249 18-277 (346)
123 COG3914 Spy Predicted O-linked 95.7 0.19 4.1E-06 49.0 12.3 112 170-288 427-573 (620)
124 PF13524 Glyco_trans_1_2: Glyc 95.7 0.13 2.9E-06 37.7 9.2 82 230-328 9-91 (92)
125 KOG4626 O-linked N-acetylgluco 95.7 0.076 1.7E-06 52.1 9.5 103 170-274 756-889 (966)
126 PF06722 DUF1205: Protein of u 95.3 0.0089 1.9E-07 44.8 1.5 54 158-211 26-84 (97)
127 PLN02949 transferase, transfer 95.1 3.7 7.9E-05 40.1 20.0 81 215-306 348-437 (463)
128 COG3660 Predicted nucleoside-d 94.8 2.1 4.5E-05 38.0 14.6 57 214-273 237-298 (329)
129 cd03791 GT1_Glycogen_synthase_ 94.1 0.53 1.1E-05 45.9 11.1 72 216-293 365-442 (476)
130 PHA01630 putative group 1 glyc 94.0 0.77 1.7E-05 42.7 11.3 105 215-330 203-327 (331)
131 PF13692 Glyco_trans_1_4: Glyc 93.5 0.074 1.6E-06 41.9 3.2 69 215-293 64-135 (135)
132 COG2099 CobK Precorrin-6x redu 93.5 4.5 9.8E-05 35.7 14.2 74 3-89 16-100 (257)
133 TIGR02400 trehalose_OtsA alpha 93.1 5.2 0.00011 39.0 15.9 100 214-332 348-455 (456)
134 TIGR02095 glgA glycogen/starch 92.8 2.2 4.7E-05 41.7 13.0 67 216-292 360-436 (473)
135 cd03789 GT1_LPS_heptosyltransf 92.7 2.2 4.8E-05 38.3 12.1 80 3-87 18-105 (279)
136 PF12000 Glyco_trans_4_3: Gkyc 91.4 2.3 4.9E-05 35.5 9.5 77 11-89 1-95 (171)
137 PF02571 CbiJ: Precorrin-6x re 91.4 9.3 0.0002 33.9 14.0 75 3-89 14-100 (249)
138 PRK14098 glycogen synthase; Pr 91.1 2.4 5.1E-05 41.7 10.9 68 216-291 376-449 (489)
139 PF13477 Glyco_trans_4_2: Glyc 91.0 0.87 1.9E-05 35.9 6.6 83 2-92 14-109 (139)
140 PF13579 Glyco_trans_4_4: Glyc 90.9 0.15 3.2E-06 40.9 2.0 85 2-92 8-106 (160)
141 PF13439 Glyco_transf_4: Glyco 90.4 0.95 2.1E-05 36.7 6.5 83 2-93 19-112 (177)
142 PHA01633 putative glycosyl tra 90.2 1.8 3.9E-05 40.3 8.7 74 215-293 217-307 (335)
143 PRK10125 putative glycosyl tra 89.0 7.8 0.00017 37.1 12.4 102 175-287 243-365 (405)
144 TIGR02193 heptsyl_trn_I lipopo 88.9 2.5 5.4E-05 38.8 8.7 118 164-291 171-319 (319)
145 PF01075 Glyco_transf_9: Glyco 88.6 3.2 7E-05 36.4 8.9 76 171-249 104-208 (247)
146 TIGR02201 heptsyl_trn_III lipo 88.5 21 0.00045 33.1 15.7 76 171-249 180-285 (344)
147 PF01975 SurE: Survival protei 87.0 1.1 2.4E-05 38.2 4.7 84 2-93 17-136 (196)
148 PLN03063 alpha,alpha-trehalose 85.0 8.4 0.00018 40.4 10.8 102 215-334 369-478 (797)
149 TIGR03713 acc_sec_asp1 accesso 84.1 2.1 4.6E-05 42.3 5.8 67 214-295 421-490 (519)
150 TIGR00715 precor6x_red precorr 83.5 4.9 0.00011 35.9 7.3 77 3-89 14-99 (256)
151 cd03793 GT1_Glycogen_synthase_ 81.5 15 0.00033 36.7 10.4 75 214-294 467-553 (590)
152 TIGR02398 gluc_glyc_Psyn gluco 81.1 53 0.0011 32.3 14.0 100 216-333 376-482 (487)
153 cd03788 GT1_TPS Trehalose-6-Ph 80.7 24 0.00053 34.3 11.7 99 214-331 353-459 (460)
154 PRK12342 hypothetical protein; 80.5 5.4 0.00012 35.5 6.4 82 2-91 41-145 (254)
155 COG0859 RfaF ADP-heptose:LPS h 79.7 52 0.0011 30.5 14.4 75 172-249 175-276 (334)
156 COG0496 SurE Predicted acid ph 77.0 7.8 0.00017 34.3 6.2 82 2-92 17-127 (252)
157 KOG1250 Threonine/serine dehyd 76.6 60 0.0013 30.8 12.0 93 174-295 218-318 (457)
158 PRK10422 lipopolysaccharide co 75.7 16 0.00035 34.0 8.6 76 171-249 182-287 (352)
159 PRK14099 glycogen synthase; Pr 73.4 39 0.00085 33.2 10.8 89 201-295 349-449 (485)
160 PF00731 AIRC: AIR carboxylase 73.3 48 0.001 26.9 10.9 132 174-312 2-148 (150)
161 PRK08057 cobalt-precorrin-6x r 72.2 17 0.00038 32.2 7.3 75 3-89 16-99 (248)
162 PF04464 Glyphos_transf: CDP-G 71.7 5.1 0.00011 37.6 4.1 250 63-328 80-367 (369)
163 COG1066 Sms Predicted ATP-depe 71.4 2.1 4.6E-05 40.5 1.4 83 1-89 110-217 (456)
164 PF05159 Capsule_synth: Capsul 70.9 18 0.00039 32.3 7.3 35 214-251 192-226 (269)
165 PLN02939 transferase, transfer 69.6 48 0.001 35.4 10.7 72 216-292 851-930 (977)
166 PRK02155 ppnK NAD(+)/NADH kina 69.3 25 0.00054 32.0 7.9 86 189-294 22-120 (291)
167 TIGR00087 surE 5'/3'-nucleotid 68.6 15 0.00032 32.5 6.1 80 2-91 17-129 (244)
168 PF03808 Glyco_tran_WecB: Glyc 68.4 53 0.0011 27.2 9.1 107 61-182 5-112 (172)
169 PRK03359 putative electron tra 67.9 22 0.00048 31.7 7.0 82 2-91 42-148 (256)
170 PRK00346 surE 5'(3')-nucleotid 66.7 17 0.00037 32.3 6.0 80 2-91 17-125 (250)
171 PRK14077 pnk inorganic polypho 66.2 27 0.00059 31.7 7.4 58 217-294 60-121 (287)
172 KOG0853 Glycosyltransferase [C 65.8 24 0.00053 34.5 7.3 106 187-303 328-440 (495)
173 TIGR02195 heptsyl_trn_II lipop 65.5 32 0.0007 31.6 8.1 76 171-249 173-276 (334)
174 PRK13932 stationary phase surv 65.2 18 0.00039 32.3 5.9 81 2-90 22-133 (257)
175 PRK15062 hydrogenase isoenzyme 65.1 42 0.00091 31.4 8.4 146 161-334 120-269 (364)
176 PLN02929 NADH kinase 63.8 27 0.00058 31.9 6.9 98 186-294 32-138 (301)
177 PRK13933 stationary phase surv 63.6 19 0.00042 32.0 5.8 32 60-91 86-130 (253)
178 PRK14501 putative bifunctional 63.1 70 0.0015 33.2 10.7 106 214-334 354-463 (726)
179 PRK10916 ADP-heptose:LPS hepto 63.0 34 0.00073 31.8 7.8 79 3-87 19-106 (348)
180 COG4370 Uncharacterized protei 62.5 24 0.00052 32.2 6.1 59 239-304 326-387 (412)
181 PRK13935 stationary phase surv 61.9 25 0.00055 31.3 6.2 31 60-90 85-128 (253)
182 cd06533 Glyco_transf_WecG_TagA 61.8 89 0.0019 25.8 9.3 108 61-182 3-110 (171)
183 KOG0081 GTPase Rab27, small G 61.7 21 0.00046 29.3 5.1 53 43-95 106-168 (219)
184 TIGR02919 accessory Sec system 60.6 22 0.00049 34.4 6.1 80 214-305 340-421 (438)
185 COG0438 RfaG Glycosyltransfera 60.2 71 0.0015 28.0 9.2 71 215-295 270-344 (381)
186 PRK10964 ADP-heptose:LPS hepto 59.6 31 0.00068 31.6 6.8 99 185-292 194-321 (322)
187 PRK02797 4-alpha-L-fucosyltran 59.4 1.5E+02 0.0032 27.4 10.7 71 214-291 219-292 (322)
188 TIGR00075 hypD hydrogenase exp 57.8 67 0.0015 30.1 8.3 146 161-334 126-275 (369)
189 COG0299 PurN Folate-dependent 56.9 1.2E+02 0.0025 26.0 8.9 46 45-90 13-58 (200)
190 PRK12446 undecaprenyldiphospho 56.0 32 0.0007 32.2 6.3 27 221-249 91-120 (352)
191 PRK13934 stationary phase surv 55.8 43 0.00093 30.0 6.6 24 2-27 17-41 (266)
192 PRK02649 ppnK inorganic polyph 55.5 50 0.0011 30.3 7.2 55 220-294 67-125 (305)
193 PF06925 MGDG_synth: Monogalac 55.0 23 0.0005 29.1 4.6 63 42-122 77-145 (169)
194 TIGR02195 heptsyl_trn_II lipop 55.0 19 0.00041 33.2 4.5 80 1-90 196-278 (334)
195 cd01965 Nitrogenase_MoFe_beta_ 54.9 20 0.00043 34.5 4.8 37 46-89 360-396 (428)
196 cd07038 TPP_PYR_PDC_IPDC_like 53.1 98 0.0021 25.3 8.0 27 224-250 60-92 (162)
197 cd02037 MRP-like MRP (Multiple 52.3 26 0.00057 28.6 4.6 57 2-70 18-76 (169)
198 PRK01911 ppnK inorganic polyph 52.3 63 0.0014 29.4 7.3 57 218-294 61-121 (292)
199 PRK10422 lipopolysaccharide co 51.9 27 0.00058 32.5 5.0 80 1-90 204-289 (352)
200 PF04413 Glycos_transf_N: 3-De 51.5 28 0.0006 29.4 4.6 77 2-90 38-126 (186)
201 PRK10916 ADP-heptose:LPS hepto 51.4 18 0.0004 33.6 3.8 80 1-90 202-288 (348)
202 PF06506 PrpR_N: Propionate ca 50.6 29 0.00062 28.9 4.5 45 41-92 109-153 (176)
203 PF06506 PrpR_N: Propionate ca 50.1 18 0.00038 30.2 3.1 26 227-253 38-63 (176)
204 PRK13931 stationary phase surv 49.5 63 0.0014 28.9 6.7 30 61-90 87-129 (261)
205 PRK04885 ppnK inorganic polyph 48.7 30 0.00066 31.0 4.6 54 221-294 35-94 (265)
206 PF01012 ETF: Electron transfe 48.2 50 0.0011 26.9 5.6 81 2-90 21-122 (164)
207 cd07039 TPP_PYR_POX Pyrimidine 47.8 1.5E+02 0.0033 24.2 10.2 79 162-250 6-96 (164)
208 PRK04539 ppnK inorganic polyph 47.6 1.5E+02 0.0032 27.1 8.9 57 218-294 65-125 (296)
209 TIGR00696 wecB_tagA_cpsF bacte 46.9 1.6E+02 0.0036 24.5 8.5 24 61-86 5-28 (177)
210 TIGR01285 nifN nitrogenase mol 46.7 38 0.00081 32.8 5.2 72 3-89 325-398 (432)
211 PLN02470 acetolactate synthase 46.7 46 0.00099 33.5 6.1 28 223-250 76-109 (585)
212 PRK04940 hypothetical protein; 46.2 50 0.0011 27.7 5.2 49 43-92 43-92 (180)
213 PLN03064 alpha,alpha-trehalose 45.5 2.8E+02 0.0061 29.8 11.6 102 215-334 453-562 (934)
214 PRK11914 diacylglycerol kinase 44.8 64 0.0014 29.4 6.3 63 187-251 25-96 (306)
215 CHL00076 chlB photochlorophyll 44.3 35 0.00075 33.8 4.7 27 60-89 373-399 (513)
216 PRK03378 ppnK inorganic polyph 43.8 97 0.0021 28.2 7.1 58 217-294 59-120 (292)
217 PRK13059 putative lipid kinase 43.3 98 0.0021 28.1 7.2 26 226-251 59-90 (295)
218 cd03789 GT1_LPS_heptosyltransf 43.0 37 0.00079 30.3 4.3 81 1-91 142-226 (279)
219 PRK10353 3-methyl-adenine DNA 42.6 1.2E+02 0.0026 25.7 6.9 75 248-327 22-119 (187)
220 COG2159 Predicted metal-depend 42.3 1.5E+02 0.0032 27.0 8.2 98 141-239 98-210 (293)
221 KOG2941 Beta-1,4-mannosyltrans 41.9 3.1E+02 0.0066 25.9 12.1 125 170-306 252-423 (444)
222 PRK15409 bifunctional glyoxyla 41.4 1.1E+02 0.0024 28.3 7.2 56 171-235 145-212 (323)
223 PF03401 TctC: Tripartite tric 41.2 2.6E+02 0.0057 25.0 10.7 25 279-306 218-242 (274)
224 cd07037 TPP_PYR_MenD Pyrimidin 41.2 52 0.0011 27.0 4.6 26 225-250 62-93 (162)
225 PRK06932 glycerate dehydrogena 41.1 1.1E+02 0.0023 28.2 7.1 55 171-234 147-208 (314)
226 COG1484 DnaC DNA replication p 40.7 14 0.00031 32.8 1.3 53 2-71 123-177 (254)
227 TIGR02201 heptsyl_trn_III lipo 40.5 36 0.00079 31.5 4.0 78 1-90 202-287 (344)
228 cd01714 ETF_beta The electron 40.4 99 0.0021 26.4 6.4 42 41-89 95-142 (202)
229 PRK08155 acetolactate synthase 40.3 65 0.0014 32.2 6.0 26 225-250 78-109 (564)
230 PRK06487 glycerate dehydrogena 40.2 1.1E+02 0.0023 28.3 7.0 55 171-234 148-208 (317)
231 COG0503 Apt Adenine/guanine ph 40.1 69 0.0015 26.8 5.2 40 46-89 42-83 (179)
232 PRK02910 light-independent pro 40.0 47 0.001 33.0 4.8 27 60-89 361-387 (519)
233 cd07035 TPP_PYR_POX_like Pyrim 39.6 1.9E+02 0.0042 22.9 8.8 59 191-251 24-93 (155)
234 PF02826 2-Hacid_dh_C: D-isome 39.6 32 0.0007 28.6 3.2 88 171-288 36-142 (178)
235 KOG3076 5'-phosphoribosylglyci 39.5 1.4E+02 0.003 25.3 6.7 49 42-90 16-66 (206)
236 PF05728 UPF0227: Uncharacteri 39.4 59 0.0013 27.4 4.8 49 41-94 44-93 (187)
237 TIGR00147 lipid kinase, YegS/R 39.4 1.2E+02 0.0026 27.3 7.1 63 187-251 18-91 (293)
238 cd03466 Nitrogenase_NifN_2 Nit 39.3 45 0.00098 32.2 4.5 36 44-89 362-397 (429)
239 cd01981 Pchlide_reductase_B Pc 39.0 53 0.0012 31.6 5.0 28 60-90 369-396 (430)
240 TIGR01278 DPOR_BchB light-inde 39.0 47 0.001 32.9 4.7 28 60-90 363-390 (511)
241 cd06559 Endonuclease_V Endonuc 38.7 29 0.00062 29.9 2.7 42 46-92 83-131 (208)
242 PRK03372 ppnK inorganic polyph 38.5 1.6E+02 0.0034 27.1 7.7 55 220-294 71-129 (306)
243 cd03412 CbiK_N Anaerobic cobal 38.4 51 0.0011 25.8 3.9 37 173-209 2-40 (127)
244 PRK01231 ppnK inorganic polyph 38.1 1.5E+02 0.0031 27.1 7.4 54 221-294 62-119 (295)
245 cd01141 TroA_d Periplasmic bin 38.0 53 0.0012 27.2 4.3 30 60-89 68-99 (186)
246 PRK15469 ghrA bifunctional gly 37.9 1.9E+02 0.0042 26.5 8.3 56 171-235 136-202 (312)
247 PF01075 Glyco_transf_9: Glyco 37.4 23 0.00051 30.8 2.1 81 2-92 127-212 (247)
248 PF04007 DUF354: Protein of un 37.2 97 0.0021 28.9 6.2 27 221-249 83-109 (335)
249 PRK02645 ppnK inorganic polyph 37.2 78 0.0017 29.0 5.5 62 188-251 19-89 (305)
250 COG0052 RpsB Ribosomal protein 37.0 62 0.0013 28.6 4.5 35 61-95 156-192 (252)
251 PRK11519 tyrosine kinase; Prov 36.6 1.3E+02 0.0029 31.2 7.7 82 2-89 545-667 (719)
252 COG0801 FolK 7,8-dihydro-6-hyd 36.3 75 0.0016 26.1 4.6 35 174-208 3-37 (160)
253 cd01976 Nitrogenase_MoFe_alpha 36.3 45 0.00097 32.1 4.0 28 60-90 368-395 (421)
254 PRK08410 2-hydroxyacid dehydro 36.1 1.4E+02 0.0029 27.5 7.0 88 171-288 145-247 (311)
255 COG0859 RfaF ADP-heptose:LPS h 36.1 38 0.00083 31.3 3.4 80 2-92 198-280 (334)
256 PF05225 HTH_psq: helix-turn-h 36.1 75 0.0016 19.8 3.7 25 279-306 1-26 (45)
257 PRK13055 putative lipid kinase 35.6 1.4E+02 0.0031 27.6 7.1 63 187-251 19-93 (334)
258 COG1422 Predicted membrane pro 35.2 1.1E+02 0.0023 26.2 5.4 47 282-330 59-106 (201)
259 PRK09219 xanthine phosphoribos 35.2 1.2E+02 0.0025 25.7 5.9 31 60-90 49-81 (189)
260 PF06180 CbiK: Cobalt chelatas 34.9 48 0.001 29.7 3.6 38 173-210 2-42 (262)
261 TIGR01286 nifK nitrogenase mol 34.8 59 0.0013 32.3 4.6 27 60-89 436-462 (515)
262 TIGR01205 D_ala_D_alaTIGR D-al 34.4 72 0.0016 29.0 4.9 67 3-87 22-94 (315)
263 PF07429 Glyco_transf_56: 4-al 34.3 4E+02 0.0086 25.0 10.5 72 214-292 258-332 (360)
264 cd01715 ETF_alpha The electron 34.1 1.4E+02 0.0031 24.4 6.2 45 41-92 70-117 (168)
265 cd01980 Chlide_reductase_Y Chl 34.0 71 0.0015 30.7 4.9 79 2-89 293-375 (416)
266 PRK03501 ppnK inorganic polyph 33.8 1.4E+02 0.0031 26.7 6.5 76 189-294 18-98 (264)
267 PLN02948 phosphoribosylaminoim 33.8 5.1E+02 0.011 26.1 13.3 135 171-314 409-560 (577)
268 PF04127 DFP: DNA / pantothena 33.8 23 0.00049 29.9 1.3 20 3-23 34-53 (185)
269 TIGR01007 eps_fam capsular exo 33.0 92 0.002 26.2 5.0 21 2-23 36-56 (204)
270 PRK13337 putative lipid kinase 32.9 1.7E+02 0.0038 26.5 7.1 62 188-251 19-91 (304)
271 COG1058 CinA Predicted nucleot 32.6 1.5E+02 0.0032 26.5 6.3 61 4-88 26-93 (255)
272 PF01924 HypD: Hydrogenase for 32.4 67 0.0015 30.0 4.2 145 161-333 115-263 (355)
273 PRK13054 lipid kinase; Reviewe 32.3 1.4E+02 0.0031 27.0 6.5 62 188-251 18-92 (300)
274 cd01974 Nitrogenase_MoFe_beta 32.3 84 0.0018 30.4 5.2 27 60-89 376-402 (435)
275 smart00096 UTG Uteroglobin. 32.3 1.2E+02 0.0025 21.1 4.4 51 277-333 15-65 (69)
276 TIGR02015 BchY chlorophyllide 32.2 68 0.0015 30.9 4.5 79 2-89 298-380 (422)
277 PF05014 Nuc_deoxyrib_tr: Nucl 32.1 38 0.00083 25.7 2.3 22 231-252 74-98 (113)
278 TIGR03646 YtoQ_fam YtoQ family 31.9 2.1E+02 0.0045 22.7 6.1 35 214-250 68-110 (144)
279 TIGR00347 bioD dethiobiotin sy 31.6 1.3E+02 0.0029 24.2 5.6 43 45-92 88-139 (166)
280 PRK13057 putative lipid kinase 31.5 1.4E+02 0.0031 26.8 6.2 31 219-251 48-82 (287)
281 PF02951 GSH-S_N: Prokaryotic 31.3 21 0.00045 27.8 0.6 21 2-23 21-41 (119)
282 PRK06276 acetolactate synthase 31.0 3.2E+02 0.0069 27.5 9.3 27 224-250 64-96 (586)
283 TIGR02193 heptsyl_trn_I lipopo 31.0 58 0.0013 29.7 3.7 78 1-90 200-281 (319)
284 PF08323 Glyco_transf_5: Starc 30.9 22 0.00048 31.4 0.8 20 3-23 24-43 (245)
285 PRK14075 pnk inorganic polypho 30.8 1.2E+02 0.0026 27.0 5.6 83 187-294 12-95 (256)
286 cd01840 SGNH_hydrolase_yrhL_li 30.3 1.8E+02 0.004 23.0 6.2 42 166-208 45-86 (150)
287 PRK07574 formate dehydrogenase 30.2 2.6E+02 0.0055 26.7 7.9 58 171-237 192-262 (385)
288 COG2894 MinD Septum formation 29.8 1E+02 0.0022 27.1 4.5 62 3-69 22-121 (272)
289 PF09001 DUF1890: Domain of un 29.8 24 0.00051 28.1 0.7 80 2-89 17-101 (139)
290 cd03791 GT1_Glycogen_synthase_ 29.6 27 0.00059 33.8 1.3 95 172-270 295-395 (476)
291 PRK07449 2-succinyl-5-enolpyru 29.5 1E+02 0.0022 30.8 5.4 25 226-250 75-105 (568)
292 PRK08334 translation initiatio 29.4 1.2E+02 0.0027 28.4 5.5 19 73-91 263-281 (356)
293 PF04493 Endonuclease_5: Endon 29.3 76 0.0016 27.3 3.8 49 41-94 74-129 (206)
294 cd01121 Sms Sms (bacterial rad 29.2 58 0.0013 30.8 3.4 84 2-90 100-208 (372)
295 TIGR01761 thiaz-red thiazoliny 29.1 2.8E+02 0.006 25.9 7.8 60 214-273 55-121 (343)
296 PRK04761 ppnK inorganic polyph 29.0 46 0.001 29.5 2.5 28 222-251 26-57 (246)
297 COG3195 Uncharacterized protei 29.0 2.9E+02 0.0062 22.9 6.7 95 214-311 64-164 (176)
298 PRK12311 rpsB 30S ribosomal pr 28.8 64 0.0014 29.9 3.5 34 61-94 152-187 (326)
299 PF01497 Peripla_BP_2: Peripla 28.7 97 0.0021 26.5 4.6 32 61-92 60-93 (238)
300 TIGR01012 Sa_S2_E_A ribosomal 28.6 90 0.002 26.6 4.1 33 61-93 108-142 (196)
301 cd03146 GAT1_Peptidase_E Type 28.3 3.7E+02 0.008 22.9 8.1 70 159-232 17-89 (212)
302 PLN03139 formate dehydrogenase 28.3 3.3E+02 0.0071 26.0 8.2 54 171-234 199-266 (386)
303 TIGR01862 N2-ase-Ialpha nitrog 28.3 66 0.0014 31.2 3.7 27 60-89 386-412 (443)
304 COG3340 PepE Peptidase E [Amin 28.3 4E+02 0.0087 23.2 8.9 86 161-250 23-125 (224)
305 PRK01185 ppnK inorganic polyph 27.9 92 0.002 28.1 4.3 54 221-294 52-106 (271)
306 PRK07710 acetolactate synthase 27.8 3.3E+02 0.0071 27.3 8.7 80 159-250 19-111 (571)
307 COG0041 PurE Phosphoribosylcar 27.7 3.4E+02 0.0074 22.2 10.9 132 174-314 4-152 (162)
308 COG2230 Cfa Cyclopropane fatty 27.7 51 0.0011 29.9 2.6 40 230-269 80-121 (283)
309 cd01425 RPS2 Ribosomal protein 27.4 72 0.0016 27.0 3.3 33 60-92 126-160 (193)
310 PRK10964 ADP-heptose:LPS hepto 27.4 1.6E+02 0.0034 26.9 5.9 78 1-90 199-280 (322)
311 PRK09423 gldA glycerol dehydro 27.3 2.7E+02 0.0058 26.1 7.5 87 162-252 21-117 (366)
312 COG1703 ArgK Putative periplas 27.3 1.3E+02 0.0028 27.6 5.0 109 3-124 70-200 (323)
313 TIGR01284 alt_nitrog_alph nitr 27.0 55 0.0012 31.9 2.9 27 60-89 394-420 (457)
314 PLN02331 phosphoribosylglycina 27.0 1.5E+02 0.0033 25.4 5.3 45 45-89 12-56 (207)
315 PRK04020 rps2P 30S ribosomal p 26.8 74 0.0016 27.3 3.3 34 61-94 114-149 (204)
316 PF02310 B12-binding: B12 bind 26.6 89 0.0019 23.6 3.5 15 4-19 20-34 (121)
317 PF02776 TPP_enzyme_N: Thiamin 26.4 72 0.0016 26.2 3.1 81 161-251 6-98 (172)
318 PF10686 DUF2493: Protein of u 26.3 2.3E+02 0.0049 19.7 6.3 25 227-251 35-65 (71)
319 PF07355 GRDB: Glycine/sarcosi 26.3 1.3E+02 0.0029 28.0 5.0 38 219-267 266-303 (349)
320 PF07015 VirC1: VirC1 protein; 26.1 1.5E+02 0.0033 26.0 5.1 65 2-71 20-93 (231)
321 PRK12315 1-deoxy-D-xylulose-5- 25.9 5.3E+02 0.011 26.1 9.7 103 172-291 461-580 (581)
322 COG3964 Predicted amidohydrola 25.9 4.7E+02 0.01 24.1 8.2 79 199-289 183-264 (386)
323 PF04748 Polysacc_deac_2: Dive 25.8 4.3E+02 0.0094 22.7 10.6 90 161-273 79-181 (213)
324 COG1052 LdhA Lactate dehydroge 25.7 3.2E+02 0.007 25.3 7.5 90 171-288 146-251 (324)
325 PRK14092 2-amino-4-hydroxy-6-h 25.7 1.5E+02 0.0034 24.4 4.9 32 170-201 5-36 (163)
326 TIGR03029 EpsG chain length de 25.6 1.3E+02 0.0029 26.6 5.0 21 2-23 122-142 (274)
327 PRK05282 (alpha)-aspartyl dipe 25.5 3.9E+02 0.0085 23.4 7.7 82 162-249 24-119 (233)
328 COG0409 HypD Hydrogenase matur 25.3 3.2E+02 0.007 25.3 7.1 144 161-333 122-269 (364)
329 COG3150 Predicted esterase [Ge 25.3 1E+02 0.0022 25.8 3.6 48 41-92 44-91 (191)
330 PF02514 CobN-Mg_chel: CobN/Ma 25.2 4E+02 0.0087 29.3 9.1 102 158-259 53-177 (1098)
331 cd01147 HemV-2 Metal binding p 25.1 1.2E+02 0.0026 26.5 4.6 30 61-90 74-106 (262)
332 PRK06436 glycerate dehydrogena 25.0 2.9E+02 0.0064 25.2 7.1 56 171-235 122-185 (303)
333 PLN02928 oxidoreductase family 24.7 2.5E+02 0.0055 26.2 6.8 30 171-207 159-188 (347)
334 cd08177 MAR Maleylacetate redu 24.7 2E+02 0.0044 26.6 6.1 27 226-253 80-111 (337)
335 cd08551 Fe-ADH iron-containing 24.6 3.2E+02 0.0069 25.6 7.5 11 243-253 122-132 (370)
336 COG1691 NCAIR mutase (PurE)-re 24.4 2.9E+02 0.0062 24.2 6.3 75 173-252 118-204 (254)
337 cd07766 DHQ_Fe-ADH Dehydroquin 24.2 4.4E+02 0.0095 24.1 8.3 86 162-252 14-113 (332)
338 TIGR02095 glgA glycogen/starch 24.2 41 0.00088 32.7 1.4 94 173-270 291-390 (473)
339 TIGR01744 XPRTase xanthine pho 24.1 2.4E+02 0.0051 23.9 5.9 30 60-89 49-80 (191)
340 PRK13010 purU formyltetrahydro 24.0 4.1E+02 0.0089 24.1 7.8 47 43-91 104-150 (289)
341 COG3265 GntK Gluconate kinase 23.9 87 0.0019 25.6 2.9 60 228-293 3-66 (161)
342 TIGR01011 rpsB_bact ribosomal 23.7 93 0.002 27.2 3.4 34 60-93 154-189 (225)
343 COG1737 RpiR Transcriptional r 23.7 3.2E+02 0.0069 24.6 7.0 88 162-255 123-216 (281)
344 PRK06849 hypothetical protein; 23.7 93 0.002 29.4 3.7 21 2-23 18-38 (389)
345 PRK14476 nitrogenase molybdenu 23.5 1.2E+02 0.0026 29.5 4.5 25 61-88 371-395 (455)
346 PRK14076 pnk inorganic polypho 23.4 1.3E+02 0.0029 30.2 4.9 52 225-294 350-405 (569)
347 PF04230 PS_pyruv_trans: Polys 23.3 1.6E+02 0.0035 25.3 5.1 38 45-90 247-284 (286)
348 PF06792 UPF0261: Uncharacteri 23.1 4.4E+02 0.0096 25.3 7.9 218 4-254 20-281 (403)
349 PLN02293 adenine phosphoribosy 23.1 2.1E+02 0.0045 24.1 5.4 29 60-88 61-91 (187)
350 PRK07525 sulfoacetaldehyde ace 22.9 2.1E+02 0.0044 28.9 6.2 81 160-250 10-101 (588)
351 PRK08199 thiamine pyrophosphat 22.8 1.8E+02 0.0039 29.1 5.7 80 160-249 12-103 (557)
352 PF00070 Pyr_redox: Pyridine n 22.8 58 0.0013 22.7 1.7 21 2-23 12-32 (80)
353 TIGR00655 PurU formyltetrahydr 22.7 5.2E+02 0.011 23.3 8.1 47 42-90 94-140 (280)
354 PF10083 DUF2321: Uncharacteri 22.7 1.7E+02 0.0036 23.9 4.3 72 249-331 78-149 (158)
355 PRK03708 ppnK inorganic polyph 22.5 68 0.0015 29.0 2.4 54 221-294 57-113 (277)
356 PRK06457 pyruvate dehydrogenas 22.5 1.8E+02 0.0039 29.0 5.7 79 162-250 8-97 (549)
357 PRK13011 formyltetrahydrofolat 22.5 5.2E+02 0.011 23.4 8.1 47 42-90 99-145 (286)
358 PRK11790 D-3-phosphoglycerate 22.3 3.2E+02 0.007 26.2 7.1 55 171-234 151-214 (409)
359 cd01018 ZntC Metal binding pro 22.2 3.2E+02 0.0069 24.2 6.7 46 42-91 202-249 (266)
360 cd01143 YvrC Periplasmic bindi 22.1 1.7E+02 0.0036 24.1 4.7 30 61-90 60-90 (195)
361 TIGR02329 propionate_PrpR prop 22.1 1.8E+02 0.0039 29.0 5.5 44 41-91 129-172 (526)
362 PF01995 DUF128: Domain of unk 22.0 2.4E+02 0.0051 24.9 5.6 77 171-250 144-223 (236)
363 KOG0069 Glyoxylate/hydroxypyru 22.0 5.7E+02 0.012 23.9 8.3 88 171-288 162-268 (336)
364 PRK05299 rpsB 30S ribosomal pr 21.9 1E+02 0.0022 27.5 3.4 34 60-93 156-191 (258)
365 cd01977 Nitrogenase_VFe_alpha 21.9 88 0.0019 30.0 3.2 27 60-89 357-383 (415)
366 PRK02231 ppnK inorganic polyph 21.8 92 0.002 28.1 3.1 58 216-293 37-98 (272)
367 PRK08322 acetolactate synthase 21.7 1.8E+02 0.0039 28.9 5.5 77 162-250 7-96 (547)
368 cd01540 PBP1_arabinose_binding 21.7 2.3E+02 0.0049 24.9 5.7 30 60-89 53-86 (289)
369 PF08660 Alg14: Oligosaccharid 21.5 2.8E+02 0.0061 22.9 5.7 32 60-91 91-130 (170)
370 KOG2199 Signal transducing ada 21.5 1.6E+02 0.0035 27.9 4.6 61 267-334 75-139 (462)
371 PF01555 N6_N4_Mtase: DNA meth 21.4 2.4E+02 0.0053 23.6 5.7 44 45-94 180-225 (231)
372 PRK14478 nitrogenase molybdenu 21.4 1.1E+02 0.0023 30.1 3.7 26 60-88 392-417 (475)
373 PRK05579 bifunctional phosphop 21.3 6.8E+02 0.015 23.9 9.0 75 214-292 75-182 (399)
374 PF10163 EnY2: Transcription f 21.3 81 0.0018 22.8 2.2 48 279-332 15-62 (86)
375 PF08030 NAD_binding_6: Ferric 21.3 95 0.0021 24.7 2.9 40 173-212 3-47 (156)
376 PRK08207 coproporphyrinogen II 21.2 6.9E+02 0.015 24.6 9.2 112 174-292 221-347 (488)
377 PRK02304 adenine phosphoribosy 21.1 2.4E+02 0.0052 23.3 5.3 29 60-88 50-80 (175)
378 TIGR01283 nifE nitrogenase mol 21.1 1.4E+02 0.0031 29.0 4.5 27 60-89 394-420 (456)
379 CHL00067 rps2 ribosomal protei 21.1 1.1E+02 0.0024 26.8 3.4 35 60-94 160-196 (230)
380 cd01966 Nitrogenase_NifN_1 Nit 20.9 1.5E+02 0.0033 28.5 4.6 25 61-88 360-384 (417)
381 PRK13243 glyoxylate reductase; 20.8 3.9E+02 0.0085 24.7 7.2 55 170-234 149-215 (333)
382 KOG4180 Predicted kinase [Gene 20.8 1.1E+02 0.0024 28.2 3.3 82 159-249 49-135 (395)
383 cd08170 GlyDH Glycerol dehydro 20.7 5E+02 0.011 24.0 8.0 87 162-252 14-110 (351)
384 COG1179 Dinucleotide-utilizing 20.3 1.9E+02 0.0041 25.7 4.5 67 216-312 25-95 (263)
385 PRK09107 acetolactate synthase 20.3 5.7E+02 0.012 25.8 8.7 110 171-295 418-545 (595)
386 cd07025 Peptidase_S66 LD-Carbo 20.3 2.8E+02 0.0061 25.0 6.0 66 185-252 46-121 (282)
387 PRK08527 acetolactate synthase 20.3 2.1E+02 0.0045 28.7 5.6 27 224-250 67-99 (563)
388 PRK05628 coproporphyrinogen II 20.2 6.5E+02 0.014 23.6 8.7 112 173-291 61-185 (375)
389 cd06297 PBP1_LacI_like_12 Liga 20.1 3.4E+02 0.0074 23.5 6.5 31 60-90 54-86 (269)
390 COG2984 ABC-type uncharacteriz 20.1 7E+02 0.015 23.1 12.3 92 45-150 76-168 (322)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-54 Score=413.39 Aligned_cols=329 Identities=33% Similarity=0.561 Sum_probs=266.1
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C-ccc-----C-CC-CCc---ch---h-------hhHHHHHHHHHHHhhCC
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQA-----L-DL-KHS---RI---V-------FYIDHNRAFILFVNQNG 57 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~-----~-~~-p~~---~~---~-------~~~~~~~~li~~~~~~~ 57 (342)
|++||++| +.||++|||++++. .... . ... + +| |++ +. . .+.+.++++++++...
T Consensus 24 ~l~LAk~L-a~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~- 101 (451)
T PLN02410 24 MMQLAKTL-HLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQ- 101 (451)
T ss_pred HHHHHHHH-HcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 68999999 99999999999987 5321 1 001 1 22 332 10 1 4556677777765311
Q ss_pred CCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhh------------------cccc--------c
Q 037221 58 NQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLK------------------EKGL--------V 111 (342)
Q Consensus 58 ~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~------------------~~~~--------~ 111 (342)
...+++|||+|.+.+|+..+|+++|||++.|++++++....+.++..+. -.+. .
T Consensus 102 ~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp 181 (451)
T PLN02410 102 QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFP 181 (451)
T ss_pred cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccccCccccCCCCCCCChHHCc
Confidence 1246799999999999999999999999999998877554332210000 0000 0
Q ss_pred -------------------cccceEEEEcCchhhhHHHHHHHhhhC-Cceeeccccccccc--cccccchhHHHHHHhcC
Q 037221 112 -------------------ASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLLLY--QNLWKKETECLRWLDSK 169 (342)
Q Consensus 112 -------------------~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~~~--~~~~~~~~~~~~~l~~~ 169 (342)
...++.+++|||++||+.+++.++... ++++.|||++.... ...+..+.+|.+||+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~ 261 (451)
T PLN02410 182 VSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQ 261 (451)
T ss_pred chhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhC
Confidence 246778999999999999999998754 57999999975321 12223345689999999
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC------C---C------------------CHHHHhCCC
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD------L---F------------------PQEEVLNHP 222 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~------~---~------------------pq~~lL~~~ 222 (342)
++++||||||||....+.+++.+++.+|+.++.+|+|+++++ . . ||.+||+|+
T Consensus 262 ~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~ 341 (451)
T PLN02410 262 KKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHP 341 (451)
T ss_pred CCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCC
Confidence 889999999999999999999999999999999999998732 0 0 999999999
Q ss_pred CCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHH
Q 037221 223 SIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNK 302 (342)
Q Consensus 223 ~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~ 302 (342)
++++|||||||||++|++++|||||++|+++||+.||+++++.+|+|+.+...+ ++++|+++|+++|.+++|++||++
T Consensus 342 ~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~--~~~~v~~av~~lm~~~~~~~~r~~ 419 (451)
T PLN02410 342 AVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDL--DRGAVERAVKRLMVEEEGEEMRKR 419 (451)
T ss_pred ccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcc--cHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999999999999999999999999999966679999998778 999999999999998878889999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 303 ASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 303 a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
|+++++.+++|+++||||++++++|++.+..
T Consensus 420 a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 420 AISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998753
No 2
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.3e-53 Score=406.84 Aligned_cols=321 Identities=28% Similarity=0.487 Sum_probs=257.1
Q ss_pred Chhhcch--hhccCCCeEEEEeCCC-CCCC-C-cccC---------CC-CCc---chh--------hhHHHHHHHHHHHh
Q 037221 1 MLQLAKL--PHHHKGFHITFVNFEN-KKNM-A-SQAL---------DL-KHS---RIV--------FYIDHNRAFILFVN 54 (342)
Q Consensus 1 ~l~la~~--L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~---------~~-p~~---~~~--------~~~~~~~~li~~~~ 54 (342)
|++||++ | ++||++|||++++. .+.+ . .... +| |++ +.. .+.+.+++++++
T Consensus 25 ~l~La~~L~L-~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 101 (456)
T PLN02210 25 MLKLAKHLSL-SSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDPRAPETLLKSLNKVGAKNLSKIIEE-- 101 (456)
T ss_pred HHHHHHHHHh-hcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcccCHHHHHHHHHHhhhHHHHHHHhc--
Confidence 6899999 5 69999999999998 7665 3 1111 12 322 111 222333333333
Q ss_pred hCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh-------------------hhhh---------
Q 037221 55 QNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF-------------------RTLK--------- 106 (342)
Q Consensus 55 ~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~-------------------~~~~--------- 106 (342)
.+|||||+|.+.+|+..+|+++|||.+.|++.++.....+.++ +.+.
T Consensus 102 -----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pgl~~~~~~dl~~ 176 (456)
T PLN02210 102 -----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTVELPALPLLEVRDLPS 176 (456)
T ss_pred -----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCeeeCCCCCCCChhhCCh
Confidence 3799999999999999999999999999988776654433221 0000
Q ss_pred ----cccc-----------ccccceEEEEcCchhhhHHHHHHHhhhCCceeeccccccc----ccc---------ccccc
Q 037221 107 ----EKGL-----------VASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLL----LYQ---------NLWKK 158 (342)
Q Consensus 107 ----~~~~-----------~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~----~~~---------~~~~~ 158 (342)
..+. ....++.+++|||+++|+.+++.++.. +++++|||++.. ... ..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~ 255 (456)
T PLN02210 177 FMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKS 255 (456)
T ss_pred hhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-CCEEEEcccCchhhcCccccccccccccccccc
Confidence 0000 023467899999999999999988774 679999999742 110 01234
Q ss_pred hhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC----------------------CCHH
Q 037221 159 ETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL----------------------FPQE 216 (342)
Q Consensus 159 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~----------------------~pq~ 216 (342)
+++|.+|++.++++++|||||||....+.+++++++.+|+..+.+|+|+++++. .||.
T Consensus 256 ~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~ 335 (456)
T PLN02210 256 DDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQE 335 (456)
T ss_pred chHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHH
Confidence 567999999998899999999999988999999999999999999999885321 1999
Q ss_pred HHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-----cccCCHhHHHHHHHHHH
Q 037221 217 EVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-----DEDGIRNVIQKSVRELL 291 (342)
Q Consensus 217 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-----~~~~~~~~l~~~i~~ll 291 (342)
+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.+.. .+ ++++|+++|+++|
T Consensus 336 ~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~--~~~~l~~av~~~m 413 (456)
T PLN02210 336 KILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGEL--KVEEVERCIEAVT 413 (456)
T ss_pred HHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcC--CHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999444999999852 57 9999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 292 EGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 292 ~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
.+++|++||+||+++++..++|+++||||++++++|++++.
T Consensus 414 ~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 414 EGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999999875
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.2e-52 Score=402.26 Aligned_cols=332 Identities=32% Similarity=0.578 Sum_probs=266.9
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C--c------c-----------cCCC-CCc-----chh--------hhHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A--S------Q-----------ALDL-KHS-----RIV--------FYIDH 45 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~--~------~-----------~~~~-p~~-----~~~--------~~~~~ 45 (342)
|++||++| +.||++|||++++. .+.+ + . . ..+| |++ ++. .+.+.
T Consensus 24 ml~lA~~L-a~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~~~~~~~~~~~~~~~~~ 102 (480)
T PLN02555 24 LLRLGKLL-ASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQDLDLYLPQLELVGKRE 102 (480)
T ss_pred HHHHHHHH-HhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccccCHHHHHHHHHHhhhHH
Confidence 68999999 99999999999997 5543 2 0 0 0112 322 111 45566
Q ss_pred HHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhh-------------------hh
Q 037221 46 NRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRT-------------------LK 106 (342)
Q Consensus 46 ~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-------------------~~ 106 (342)
++++++++.. ...+++|||+|.+..|+..+|+++|||++.|++++++....+.+++. +.
T Consensus 103 l~~~l~~~~~--~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp 180 (480)
T PLN02555 103 IPNLVKRYAE--QGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFPTETEPEIDVQLPCMP 180 (480)
T ss_pred HHHHHHHHhc--cCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCcccccCCCceeecCCCC
Confidence 7777776532 12335999999999999999999999999999988776554322210 00
Q ss_pred -----------cc--cc------------ccccceEEEEcCchhhhHHHHHHHhhhCCceeeccccccccc---c----c
Q 037221 107 -----------EK--GL------------VASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLY---Q----N 154 (342)
Q Consensus 107 -----------~~--~~------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~---~----~ 154 (342)
.. .. ....++.+++|||++||+.+++.++...| ++.|||+..... . .
T Consensus 181 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~-v~~iGPl~~~~~~~~~~~~~~ 259 (480)
T PLN02555 181 LLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCP-IKPVGPLFKMAKTPNSDVKGD 259 (480)
T ss_pred CcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCC-EEEeCcccCcccccccccccc
Confidence 00 00 03356789999999999999998877656 999999974321 0 1
Q ss_pred cccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-------------C---------
Q 037221 155 LWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD-------------L--------- 212 (342)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~-------------~--------- 212 (342)
.+..+++|.+||+.++++++|||||||+...+.+++.+++.+|+..+++|||++++. .
T Consensus 260 ~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g 339 (480)
T PLN02555 260 ISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKG 339 (480)
T ss_pred ccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCce
Confidence 123356799999999888999999999998999999999999999999999997520 0
Q ss_pred -----CCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEec-----c-cccCCHh
Q 037221 213 -----FPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEIN-----G-DEDGIRN 281 (342)
Q Consensus 213 -----~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~-----~-~~~~~~~ 281 (342)
.||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+. . .+ +.+
T Consensus 340 ~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v--~~~ 417 (480)
T PLN02555 340 KIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLI--TRE 417 (480)
T ss_pred EEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcC--cHH
Confidence 1999999999999999999999999999999999999999999999999977779999993 2 57 999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCCCC
Q 037221 282 VIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPKEHI 338 (342)
Q Consensus 282 ~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~~~~ 338 (342)
+|.++|+++|.+++|+++|+||++|++..++|+++||||++++++||+++......+
T Consensus 418 ~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~~~~ 474 (480)
T PLN02555 418 EVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKSVEI 474 (480)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcccee
Confidence 999999999988888899999999999999999999999999999999998765443
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.2e-52 Score=397.29 Aligned_cols=323 Identities=29% Similarity=0.504 Sum_probs=258.6
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Cc--cc------CCC-CCc------chh--------hhHHHHHHHHHHHhh
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-AS--QA------LDL-KHS------RIV--------FYIDHNRAFILFVNQ 55 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~--~~------~~~-p~~------~~~--------~~~~~~~~li~~~~~ 55 (342)
|++||++| +.+|++|||++++. ...+ .. .. .+| |++ ++. .+.+.++++++++..
T Consensus 22 ~l~lAk~L-a~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (449)
T PLN02173 22 IRQFCKRL-HSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQNFKTFGSKTVADIIRKHQS 100 (449)
T ss_pred HHHHHHHH-HcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 68999999 99999999999997 5544 21 00 122 431 121 466777888877532
Q ss_pred CCCCCCc-cEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhh-----------hhhh-----------hcc---c
Q 037221 56 NGNQPAV-SCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQ-----------FRTL-----------KEK---G 109 (342)
Q Consensus 56 ~~~~~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-----------~~~~-----------~~~---~ 109 (342)
+.+| +|||+|.+.+|+..+|+.+|||++.|++++++....+++ ++.+ ... .
T Consensus 101 ---~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~pg~p~l~~~dlp~~~~~~~~~ 177 (449)
T PLN02173 101 ---TDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPIKDLPLLELQDLPTFVTPTGSH 177 (449)
T ss_pred ---cCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCCCCCCCCChhhCChhhcCCCCc
Confidence 1245 999999999999999999999999999977654332221 0100 000 0
Q ss_pred --cc---------cccceEEEEcCchhhhHHHHHHHhhhCCceeecccccccc-------c-c----ccc--cchhHHHH
Q 037221 110 --LV---------ASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLL-------Y-Q----NLW--KKETECLR 164 (342)
Q Consensus 110 --~~---------~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~-------~-~----~~~--~~~~~~~~ 164 (342)
.. ..+++.+++|||++||+.+++.++.. ++++.|||++... . . ..+ ..+++|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 256 (449)
T PLN02173 178 LAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTD 256 (449)
T ss_pred hHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-CCeeEEcccCchhhccccccccccccccccccccchHHHH
Confidence 00 45677899999999999999988765 4699999997421 0 0 011 22346999
Q ss_pred HHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC----------------CC------CHHHHhCCC
Q 037221 165 WLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD----------------LF------PQEEVLNHP 222 (342)
Q Consensus 165 ~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~----------------~~------pq~~lL~~~ 222 (342)
||+.++++++|||||||+...+.+++.+++.+| .+.+|+|+++.. +. ||.+||+|+
T Consensus 257 WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~ 334 (449)
T PLN02173 257 WLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNK 334 (449)
T ss_pred HHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCC
Confidence 999999999999999999999999999999999 677899998521 01 999999999
Q ss_pred CCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-----cccCCHhHHHHHHHHHHcCChHH
Q 037221 223 SIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-----DEDGIRNVIQKSVRELLEGEKGK 297 (342)
Q Consensus 223 ~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-----~~~~~~~~l~~~i~~ll~~~~~~ 297 (342)
++++|||||||||++|++.+|||||++|+++||+.||+++++.+|+|+.+.. .+ +.++|+++|+++|.+++|+
T Consensus 335 ~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~--~~e~v~~av~~vm~~~~~~ 412 (449)
T PLN02173 335 AIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIA--KREEIEFSIKEVMEGEKSK 412 (449)
T ss_pred ccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcc--cHHHHHHHHHHHhcCChHH
Confidence 9999999999999999999999999999999999999999667799988852 36 8999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 298 QMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 298 ~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
++|+||+++++..++|.++||||++++++|++++.
T Consensus 413 ~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 413 EMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999874
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.1e-52 Score=401.67 Aligned_cols=323 Identities=28% Similarity=0.459 Sum_probs=261.6
Q ss_pred Chhhcchhhc-cCCCeEEEEeCCC-CCCC-C---c-cc----------CCC-C-Cc-c----hh----hhHHHHHHHHHH
Q 037221 1 MLQLAKLPHH-HKGFHITFVNFEN-KKNM-A---S-QA----------LDL-K-HS-R----IV----FYIDHNRAFILF 52 (342)
Q Consensus 1 ~l~la~~L~~-~~Gh~Vt~~~~~~-~~~~-~---~-~~----------~~~-p-~~-~----~~----~~~~~~~~li~~ 52 (342)
|++||++| + .+|++|||++++. .+++ + . .. +++ | ++ + +. .+.+.+++++++
T Consensus 22 ~l~LAk~L-a~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (481)
T PLN02992 22 VIELGKRL-SANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSAHVVTKIGVIMREAVPTLRSKIAE 100 (481)
T ss_pred HHHHHHHH-HhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCccHHHHHHHHHHHhHHHHHHHHHh
Confidence 68999999 8 7999999999997 5443 2 0 01 112 2 12 1 11 445677777766
Q ss_pred HhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhh----------------------------
Q 037221 53 VNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRT---------------------------- 104 (342)
Q Consensus 53 ~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---------------------------- 104 (342)
+. .+|+|||+|.+.+|+..+|+.+|||++.|++++++....+.+++.
T Consensus 101 ~~-----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~d 175 (481)
T PLN02992 101 MH-----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQRKPLAMPGCEPVRFED 175 (481)
T ss_pred cC-----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCCCCcccCCCCccCHHH
Confidence 52 478999999999999999999999999999988765433221110
Q ss_pred hh----ccc-c-c---------cccceEEEEcCchhhhHHHHHHHhhh-------CCceeeccccccccccccccchhHH
Q 037221 105 LK----EKG-L-V---------ASKASGIIFHTFDALEVQVLDAISAM-------FPNLFTIGPLQLLLYQNLWKKETEC 162 (342)
Q Consensus 105 ~~----~~~-~-~---------~~~~~~~l~~~~~~l~~~~~~~~~~~-------~p~~~~vGpl~~~~~~~~~~~~~~~ 162 (342)
+. ... . . ..+++.+++|||++||+.+++.++.. .++++.|||+...... ...+++|
T Consensus 176 lp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~--~~~~~~c 253 (481)
T PLN02992 176 TLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQS--SKTDHPV 253 (481)
T ss_pred hhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCccCCcCC--CcchHHH
Confidence 00 000 0 0 34677899999999999999988642 2469999999753211 1235679
Q ss_pred HHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECC-------------------CC-----------
Q 037221 163 LRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRP-------------------DL----------- 212 (342)
Q Consensus 163 ~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~-------------------~~----------- 212 (342)
.+||+.+++++||||||||...++.+++++++.+|+.++++|+|++++ +.
T Consensus 254 ~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~e 333 (481)
T PLN02992 254 LDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVS 333 (481)
T ss_pred HHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHH
Confidence 999999988999999999999999999999999999999999999952 10
Q ss_pred ------C------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc---ccc
Q 037221 213 ------F------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING---DED 277 (342)
Q Consensus 213 ------~------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~---~~~ 277 (342)
+ ||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.++. .+
T Consensus 334 R~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~- 412 (481)
T PLN02992 334 RTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVI- 412 (481)
T ss_pred HhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcc-
Confidence 1 9999999999999999999999999999999999999999999999999569999999974 48
Q ss_pred CCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhC
Q 037221 278 GIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAA--PDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 278 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~--~~g~~~~~~~~~i~~l~~ 333 (342)
+.++|+++|+++|.++.|+++|++++++++.+++|+. +||||++++++|++.+.+
T Consensus 413 -~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 413 -SRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred -cHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 9999999999999988788899999999999999994 699999999999999864
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-52 Score=402.16 Aligned_cols=325 Identities=24% Similarity=0.374 Sum_probs=259.0
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Cc--c--c----------CCC-CCc-----chh------------hhHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-AS--Q--A----------LDL-KHS-----RIV------------FYIDHN 46 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~--~--~----------~~~-p~~-----~~~------------~~~~~~ 46 (342)
|++||++| +.+|++|||++++. .+++ +. . . +++ |++ +++ .+.+.+
T Consensus 26 ~l~LAk~L-a~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~~~~~~~~a~~~~~~~~ 104 (477)
T PLN02863 26 LLDLTHRL-ALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPPSGFPLMIHALGELYAPL 104 (477)
T ss_pred HHHHHHHH-HhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcchhhHHHHHHHHHHhHHHH
Confidence 68999999 99999999999998 6555 31 0 0 112 333 111 234444
Q ss_pred HHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhh-----------------ccc
Q 037221 47 RAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLK-----------------EKG 109 (342)
Q Consensus 47 ~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~-----------------~~~ 109 (342)
.+++++. ..+|+|||+|.+.+|+..+|+.+|||++.|++++++....+.+++... -.+
T Consensus 105 ~~~l~~~-----~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg 179 (477)
T PLN02863 105 LSWFRSH-----PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNEILSFSKIPN 179 (477)
T ss_pred HHHHHhC-----CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccccccccccccCCCCC
Confidence 4444442 146899999999999999999999999999999987665543321100 000
Q ss_pred cc------------------------------cccceEEEEcCchhhhHHHHHHHhhhC--Cceeecccccccccc----
Q 037221 110 LV------------------------------ASKASGIIFHTFDALEVQVLDAISAMF--PNLFTIGPLQLLLYQ---- 153 (342)
Q Consensus 110 ~~------------------------------~~~~~~~l~~~~~~l~~~~~~~~~~~~--p~~~~vGpl~~~~~~---- 153 (342)
.. ...++.+++|||++||+.+++..+..+ ++++.|||+......
T Consensus 180 ~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~ 259 (477)
T PLN02863 180 CPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGL 259 (477)
T ss_pred CCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccc
Confidence 00 123567999999999999999998754 679999999743210
Q ss_pred -----ccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC------------C----
Q 037221 154 -----NLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD------------L---- 212 (342)
Q Consensus 154 -----~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~------------~---- 212 (342)
.....++++.+||+.++++++|||||||....+.+++.+++.+|+..+++|+|++++. .
T Consensus 260 ~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r 339 (477)
T PLN02863 260 MERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDR 339 (477)
T ss_pred cccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHH
Confidence 0011245799999999889999999999998899999999999999999999999631 0
Q ss_pred -----C------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc----ccc
Q 037221 213 -----F------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----DED 277 (342)
Q Consensus 213 -----~------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----~~~ 277 (342)
+ ||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++++|+|+.+.. .+
T Consensus 340 ~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~- 418 (477)
T PLN02863 340 VAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVP- 418 (477)
T ss_pred hccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCc-
Confidence 0 9999999999999999999999999999999999999999999999998678999999942 46
Q ss_pred CCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 037221 278 GIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 278 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
+.+++.++|+++|.++ ++||+||+++++.+++|+.+||||++++++|++.+...+
T Consensus 419 -~~~~v~~~v~~~m~~~--~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 419 -DSDELARVFMESVSEN--QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred -CHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 8999999999999422 359999999999999999999999999999999987543
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.8e-52 Score=399.13 Aligned_cols=327 Identities=29% Similarity=0.475 Sum_probs=261.7
Q ss_pred ChhhcchhhccCC----CeEEEEeCCC-CC----CC-C------cc--cC-----C-C--CCc--chh--------hhHH
Q 037221 1 MLQLAKLPHHHKG----FHITFVNFEN-KK----NM-A------SQ--AL-----D-L--KHS--RIV--------FYID 44 (342)
Q Consensus 1 ~l~la~~L~~~~G----h~Vt~~~~~~-~~----~~-~------~~--~~-----~-~--p~~--~~~--------~~~~ 44 (342)
|++||++| +.|| +.|||++++. .+ ++ . +. .+ + + |++ +.. .+.+
T Consensus 20 ~l~LAk~L-a~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~e~~~~~~~~~~~~~~~ 98 (480)
T PLN00164 20 MLEAGKRL-LASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTDAAGVEEFISRYIQLHAP 98 (480)
T ss_pred HHHHHHHH-HhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCccccHHHHHHHHHHhhhH
Confidence 68999999 9986 8999999875 33 12 1 00 01 1 0 212 111 4555
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhh------------------
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLK------------------ 106 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~------------------ 106 (342)
.++++++++. .+++|||+|.+.+|+..+|+.+|||++.|+++++.....+.+++...
T Consensus 99 ~l~~~L~~l~-----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPG 173 (480)
T PLN00164 99 HVRAAIAGLS-----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAVEFEEMEGAVDVPG 173 (480)
T ss_pred HHHHHHHhcC-----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccCcccccCcceecCC
Confidence 6666666651 35699999999999999999999999999998887655443321100
Q ss_pred --------------ccc-c-c---------cccceEEEEcCchhhhHHHHHHHhhh-------CCceeeccccccccc-c
Q 037221 107 --------------EKG-L-V---------ASKASGIIFHTFDALEVQVLDAISAM-------FPNLFTIGPLQLLLY-Q 153 (342)
Q Consensus 107 --------------~~~-~-~---------~~~~~~~l~~~~~~l~~~~~~~~~~~-------~p~~~~vGpl~~~~~-~ 153 (342)
... . . ..+++.+++|||++||+.+++.++.. .|+++.|||+..... .
T Consensus 174 lp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~ 253 (480)
T PLN00164 174 LPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP 253 (480)
T ss_pred CCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccC
Confidence 000 0 0 34677899999999999999988763 267999999974221 1
Q ss_pred ccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC----------------------
Q 037221 154 NLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD---------------------- 211 (342)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~---------------------- 211 (342)
.....+++|.+||++++++++|||||||+...+.+++.+++.+|+.++.+|+|+++..
T Consensus 254 ~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~ 333 (480)
T PLN00164 254 PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFL 333 (480)
T ss_pred CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHH
Confidence 1123456799999999899999999999988899999999999999999999998731
Q ss_pred ------------CCCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-----
Q 037221 212 ------------LFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----- 274 (342)
Q Consensus 212 ------------~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----- 274 (342)
+.||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.+..
T Consensus 334 ~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~ 413 (480)
T PLN00164 334 ERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRD 413 (480)
T ss_pred HHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccC
Confidence 119999999999999999999999999999999999999999999999988677999999852
Q ss_pred -cccCCHhHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 037221 275 -DEDGIRNVIQKSVRELLEGE--KGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 275 -~~~~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
.+ +.++|+++|+++|.++ +|+.+|++|+++++.+++|+++||||++++++|++++....
T Consensus 414 ~~~--~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 414 NFV--EAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred CcC--cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 37 8999999999999875 37789999999999999999999999999999999997654
No 8
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.2e-52 Score=398.41 Aligned_cols=327 Identities=31% Similarity=0.562 Sum_probs=259.3
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C--c----c--cC-----------CC-CCc-----chh-------------
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A--S----Q--AL-----------DL-KHS-----RIV------------- 40 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~--~----~--~~-----------~~-p~~-----~~~------------- 40 (342)
|++||+.| +.||+.|||++++. ..++ + . . .+ ++ |++ +++
T Consensus 25 ~l~LAk~L-a~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~~~~~~~~~~~~~ 103 (491)
T PLN02534 25 MIDMARLL-AERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDTLPSRDLLRKFYDAVD 103 (491)
T ss_pred HHHHHHHH-HhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccccCCcHHHHHHHHHHHH
Confidence 68999999 99999999999987 6544 2 0 0 01 12 222 111
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh------------------
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF------------------ 102 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~------------------ 102 (342)
.+.+.+++++++. +.+|+|||+|.+.+|+..+|+.+|||++.|++++++....+.++
T Consensus 104 ~l~~~l~~lL~~~-----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (491)
T PLN02534 104 KLQQPLERFLEQA-----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSVSSDSEPFVV 178 (491)
T ss_pred HhHHHHHHHHHhc-----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccCCCCCceeec
Confidence 2334455555432 24689999999999999999999999999998887755432110
Q ss_pred hhhhc------cc----c---c------------cccceEEEEcCchhhhHHHHHHHhhhC-Cceeecccccccccc---
Q 037221 103 RTLKE------KG----L---V------------ASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLLLYQ--- 153 (342)
Q Consensus 103 ~~~~~------~~----~---~------------~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~~~~--- 153 (342)
+.+.. .. . . ...++.+++|||++||+.+++.++..+ ++++.|||+......
T Consensus 179 Pg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~ 258 (491)
T PLN02534 179 PGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLD 258 (491)
T ss_pred CCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECccccccccccc
Confidence 11000 00 0 0 123568999999999999999988765 579999999742110
Q ss_pred -----ccc-cchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC---------CC-----
Q 037221 154 -----NLW-KKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD---------LF----- 213 (342)
Q Consensus 154 -----~~~-~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~---------~~----- 213 (342)
... ..+++|.+||+.++++++|||||||.....++++.+++.+|+.++.+|+|+++++ ..
T Consensus 259 ~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~ 338 (491)
T PLN02534 259 KFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFE 338 (491)
T ss_pred ccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhH
Confidence 001 1235699999999989999999999999999999999999999999999999731 00
Q ss_pred --------------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEec------
Q 037221 214 --------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEIN------ 273 (342)
Q Consensus 214 --------------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~------ 273 (342)
||.+||+|++++||||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+.
T Consensus 339 ~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 339 ERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred HhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 999999999999999999999999999999999999999999999999988999999873
Q ss_pred -------c-cccCCHhHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 037221 274 -------G-DEDGIRNVIQKSVRELLE--GEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 274 -------~-~~~~~~~~l~~~i~~ll~--~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
. .+ ++++|+++|+++|. +++|+++|+||+++++.+++|+.+||||++++++||+++.+.+
T Consensus 419 ~~~~~~~~~~v--~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 419 WGDEERVGVLV--KKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQQ 488 (491)
T ss_pred ccccccccCcc--CHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 1 26 89999999999997 4567889999999999999999999999999999999987543
No 9
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.7e-52 Score=396.77 Aligned_cols=321 Identities=24% Similarity=0.470 Sum_probs=254.6
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Cc--c--cCCC---CCc-------chh--------hhHHHHHHHHHHHhhC
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-AS--Q--ALDL---KHS-------RIV--------FYIDHNRAFILFVNQN 56 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~--~--~~~~---p~~-------~~~--------~~~~~~~~li~~~~~~ 56 (342)
|++||++| +.+|++|||+|++. .+++ +. . ++.. |++ ++. .+.+.++++++++..
T Consensus 23 mL~LAk~L-as~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~~~~~~~l~~a~~~~~~~~l~~ll~~l~~- 100 (448)
T PLN02562 23 MLKLASAF-LSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDPPRDFFSIENSMENTMPPQLERLLHKLDE- 100 (448)
T ss_pred HHHHHHHH-HhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCccccHHHHHHHHHHhchHHHHHHHHHhcC-
Confidence 68999999 99999999999998 7655 31 0 1111 211 221 367777888877642
Q ss_pred CCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh------------------------hhhh------
Q 037221 57 GNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF------------------------RTLK------ 106 (342)
Q Consensus 57 ~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~------------------------~~~~------ 106 (342)
..+++|||+|.+.+|+..+|+++|||++.|+++++.....+.++ +.+.
T Consensus 101 --~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~l~~~d 178 (448)
T PLN02562 101 --DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQLEKICVLPEQPLLSTED 178 (448)
T ss_pred --CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccccccccccCCCCCCCChhh
Confidence 12458999999999999999999999999999877643322111 0000
Q ss_pred -c----cc--c---c---------cccceEEEEcCchhhhHHHHHHHh-----hhCCceeecccccccccc-----cccc
Q 037221 107 -E----KG--L---V---------ASKASGIIFHTFDALEVQVLDAIS-----AMFPNLFTIGPLQLLLYQ-----NLWK 157 (342)
Q Consensus 107 -~----~~--~---~---------~~~~~~~l~~~~~~l~~~~~~~~~-----~~~p~~~~vGpl~~~~~~-----~~~~ 157 (342)
. .. . . ..+++.+++|||++||+.+++..+ +..|+++.|||++..... ..++
T Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~ 258 (448)
T PLN02562 179 LPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWE 258 (448)
T ss_pred CcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCcccc
Confidence 0 00 0 0 345678999999999998887654 345789999999864321 1123
Q ss_pred chhHHHHHHhcCCCCceEEEEecccc-cCCHHHHHHHHHHHhcCCCCEEEEECCC---------------CC------CH
Q 037221 158 KETECLRWLDSKLPNSVIYVNFGIAI-VVKKQQFIEVAMGLANSNHPFLWIIRPD---------------LF------PQ 215 (342)
Q Consensus 158 ~~~~~~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~iw~~~~~---------------~~------pq 215 (342)
.+.+|.+||++++++++|||||||+. ..+.+++++++.+|+..+++|||+++.. +. ||
T Consensus 259 ~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ 338 (448)
T PLN02562 259 EDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQ 338 (448)
T ss_pred chHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCH
Confidence 35578899999988899999999986 6789999999999999999999998421 11 99
Q ss_pred HHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 216 EEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++.+|+|+.+. ++ ++++|+++|+++|.|++
T Consensus 339 ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~-~~--~~~~l~~~v~~~l~~~~ 415 (448)
T PLN02562 339 LEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS-GF--GQKEVEEGLRKVMEDSG 415 (448)
T ss_pred HHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC-CC--CHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999955589998886 57 99999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 296 GKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 296 ~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
||+||+++++++.++ ++||||++++++|+++++
T Consensus 416 ---~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 416 ---MGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ---HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 999999999998876 567999999999999863
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-51 Score=394.22 Aligned_cols=320 Identities=26% Similarity=0.412 Sum_probs=253.7
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C--cc-------------cCCC-CCc-----chh------------hhHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A--SQ-------------ALDL-KHS-----RIV------------FYIDH 45 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~--~~-------------~~~~-p~~-----~~~------------~~~~~ 45 (342)
|++||++| +.||++|||++++. ..++ + +. ..+| |++ +++ .+.+.
T Consensus 23 ~l~LAk~L-a~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (472)
T PLN02670 23 FLRLSKLL-AQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLLKKAFDLLEPP 101 (472)
T ss_pred HHHHHHHH-HhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchhhHHHHHHHHHHhHHH
Confidence 68999999 99999999999988 6444 2 10 0122 322 121 23444
Q ss_pred HHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh-------------------hhh-
Q 037221 46 NRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF-------------------RTL- 105 (342)
Q Consensus 46 ~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~-------------------~~~- 105 (342)
+++++++ .+|+|||+|.+..|+..+|+++|||++.|+++++.....+.+. +..
T Consensus 102 ~~~~l~~-------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 174 (472)
T PLN02670 102 LTTFLET-------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFTVVPPWV 174 (472)
T ss_pred HHHHHHh-------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCccccccCCCCcC
Confidence 4444444 2689999999999999999999999999988776544332111 000
Q ss_pred ----------------hcc-c-c------------ccccceEEEEcCchhhhHHHHHHHhhhC-Cceeeccccccc-cc-
Q 037221 106 ----------------KEK-G-L------------VASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLL-LY- 152 (342)
Q Consensus 106 ----------------~~~-~-~------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~-~~- 152 (342)
... . . ...+++.+++|||++||+.+++..+... ++++.|||+... ..
T Consensus 175 P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~ 254 (472)
T PLN02670 175 PFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDD 254 (472)
T ss_pred CCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCcccccc
Confidence 000 0 0 0335678999999999999999998754 579999999753 11
Q ss_pred cccc----cchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-----------------
Q 037221 153 QNLW----KKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD----------------- 211 (342)
Q Consensus 153 ~~~~----~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~----------------- 211 (342)
.... ..+++|.+||+++++++||||||||+..++.+++.+++.+|+.++++|+|+++..
T Consensus 255 ~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~ 334 (472)
T PLN02670 255 EEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEE 334 (472)
T ss_pred ccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHH
Confidence 1100 1125799999999889999999999999999999999999999999999998741
Q ss_pred -----------CCCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-----c
Q 037221 212 -----------LFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-----D 275 (342)
Q Consensus 212 -----------~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-----~ 275 (342)
..||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++ +++|+|+.++. .
T Consensus 335 ~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~ 413 (472)
T PLN02670 335 RVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGS 413 (472)
T ss_pred hccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeeccccCCc
Confidence 119999999999999999999999999999999999999999999999999 78999999963 3
Q ss_pred ccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 037221 276 EDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 276 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
+ +.++|+++|+++|.+++|++||+||+++++.+++ .+...+++++|++.|+...
T Consensus 414 ~--~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 414 F--TSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred C--cHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHHhc
Confidence 7 9999999999999988777899999999999997 4555799999999998755
No 11
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-51 Score=396.11 Aligned_cols=326 Identities=30% Similarity=0.473 Sum_probs=259.3
Q ss_pred ChhhcchhhccC--CCeEEEEeCCC-CCCC-Cc---ccCCC-------CCc-----chh--------hhHHHHHHHHHHH
Q 037221 1 MLQLAKLPHHHK--GFHITFVNFEN-KKNM-AS---QALDL-------KHS-----RIV--------FYIDHNRAFILFV 53 (342)
Q Consensus 1 ~l~la~~L~~~~--Gh~Vt~~~~~~-~~~~-~~---~~~~~-------p~~-----~~~--------~~~~~~~~li~~~ 53 (342)
|++||++| +.| ||+|||++++. ...+ +. .++.. |++ +.. .+.+.++++++++
T Consensus 27 ~l~LA~~L-~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (459)
T PLN02448 27 MMNLCKLL-ASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGFLEAVMTKMEAPFEQLLDRL 105 (459)
T ss_pred HHHHHHHH-HcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHHHHHHHHHhHHHHHHHHHhc
Confidence 68999999 999 99999999998 7666 42 11111 221 111 3444555666554
Q ss_pred hhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhh------------------------hh----
Q 037221 54 NQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFR------------------------TL---- 105 (342)
Q Consensus 54 ~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~------------------------~~---- 105 (342)
. .++||||+|.+.+|+..+|+++|||++.++++++.....+.+++ .+
T Consensus 106 ~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~ 180 (459)
T PLN02448 106 E-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESGEERVDYIPGLSSTR 180 (459)
T ss_pred C-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccccCCccccCCCCCCCC
Confidence 2 36899999999999999999999999999998875433221111 00
Q ss_pred -------h-cccc--c---------cccceEEEEcCchhhhHHHHHHHhhhCC-ceeecccccccccc-----c--cccc
Q 037221 106 -------K-EKGL--V---------ASKASGIIFHTFDALEVQVLDAISAMFP-NLFTIGPLQLLLYQ-----N--LWKK 158 (342)
Q Consensus 106 -------~-~~~~--~---------~~~~~~~l~~~~~~l~~~~~~~~~~~~p-~~~~vGpl~~~~~~-----~--~~~~ 158 (342)
. .... . ..+++.+++|||++||+.+++.++..++ +++.|||+...... . ....
T Consensus 181 ~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~ 260 (459)
T PLN02448 181 LSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDN 260 (459)
T ss_pred hHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccc
Confidence 0 0000 0 2355789999999999999999877654 79999999753110 0 0112
Q ss_pred hhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC----------C------CHHHHhCCC
Q 037221 159 ETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL----------F------PQEEVLNHP 222 (342)
Q Consensus 159 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~----------~------pq~~lL~~~ 222 (342)
+.++.+|++.++++++|||||||+...+.+++++++.+|+..+++|||+++++. . ||.+||+|+
T Consensus 261 ~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~~~~~~~~~v~~w~pQ~~iL~h~ 340 (459)
T PLN02448 261 EPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASRLKEICGDMGLVVPWCDQLKVLCHS 340 (459)
T ss_pred hhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhhHhHhccCCEEEeccCCHHHHhccC
Confidence 247899999988899999999999888899999999999999999999875321 1 999999999
Q ss_pred CCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc------cccCCHhHHHHHHHHHHcCC--
Q 037221 223 SIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING------DEDGIRNVIQKSVRELLEGE-- 294 (342)
Q Consensus 223 ~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~------~~~~~~~~l~~~i~~ll~~~-- 294 (342)
++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+.. .+ ++++|+++|+++|.++
T Consensus 341 ~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~--~~~~l~~av~~vl~~~~~ 418 (459)
T PLN02448 341 SVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLV--GREEIAELVKRFMDLESE 418 (459)
T ss_pred ccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcC--cHHHHHHHHHHHhcCCch
Confidence 9999999999999999999999999999999999999999555899988842 47 9999999999999863
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 295 KGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 295 ~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
+|++||+||+++++.+++|+.+||||++++++|++++.+.
T Consensus 419 ~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 419 EGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 5778999999999999999999999999999999998764
No 12
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.4e-51 Score=395.78 Aligned_cols=327 Identities=29% Similarity=0.487 Sum_probs=253.9
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C--c------cc---------C----CC-CCc----c---------h-h--
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A--S------QA---------L----DL-KHS----R---------I-V-- 40 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~--~------~~---------~----~~-p~~----~---------~-~-- 40 (342)
|++||++| +.|||+|||++++. .+.+ + . .. + ++ |++ + . .
T Consensus 22 ~L~LAk~L-~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~~~~~~~~~~~~~ 100 (482)
T PLN03007 22 TLDMAKLF-SSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFITSNNNDDSGDLF 100 (482)
T ss_pred HHHHHHHH-HhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcccccccccccccchHHHH
Confidence 58999999 99999999999988 6544 2 0 00 0 11 221 0 0 0
Q ss_pred ----hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhh---------------
Q 037221 41 ----FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQ--------------- 101 (342)
Q Consensus 41 ----~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~--------------- 101 (342)
...+.+...++++.+ +.+|||||+|.+.+|+..+|+.+|||++.|++++++....+..
T Consensus 101 ~~~~~~~~~l~~~l~~~l~---~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 177 (482)
T PLN03007 101 LKFLFSTKYFKDQLEKLLE---TTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQKKVASSSE 177 (482)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccccccCCCCc
Confidence 111223333333321 2479999999999999999999999999999877654332210
Q ss_pred ---hhhhhc-------------c-cc----------ccccceEEEEcCchhhhHHHHHHHhhhC-Cceeecccccccccc
Q 037221 102 ---FRTLKE-------------K-GL----------VASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLLLYQ 153 (342)
Q Consensus 102 ---~~~~~~-------------~-~~----------~~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~~~~ 153 (342)
.+.+.. . .. ...+++.+++|+|++||+++++.++... .++++|||+......
T Consensus 178 ~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~ 257 (482)
T PLN03007 178 PFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRG 257 (482)
T ss_pred eeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccc
Confidence 011100 0 00 0445678999999999999888887755 369999997642210
Q ss_pred ---------ccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC------------C
Q 037221 154 ---------NLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD------------L 212 (342)
Q Consensus 154 ---------~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~------------~ 212 (342)
+.+..+.+|.+|++.++++++|||||||+.....+++.+++.+|+..+++|+|+++.. .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~ 337 (482)
T PLN03007 258 FEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEG 337 (482)
T ss_pred cccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHH
Confidence 1111246799999999889999999999998889999999999999999999988631 0
Q ss_pred ---------------CCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEe-----
Q 037221 213 ---------------FPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEI----- 272 (342)
Q Consensus 213 ---------------~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l----- 272 (342)
.||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+++|+.+
T Consensus 338 ~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~ 417 (482)
T PLN03007 338 FEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKL 417 (482)
T ss_pred HHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccc
Confidence 099999999999999999999999999999999999999999999999985555666554
Q ss_pred ---cc-cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 273 ---NG-DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 273 ---~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
+. .+ ++++|+++|+++|.+++|++||+||+++++.+++|+++||||++++++|++.+.+
T Consensus 418 ~~~~~~~~--~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 418 VKVKGDFI--SREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred cccccCcc--cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 22 57 9999999999999998777899999999999999999999999999999999874
No 13
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-51 Score=390.40 Aligned_cols=329 Identities=23% Similarity=0.402 Sum_probs=254.3
Q ss_pred ChhhcchhhccCC--CeEEEEeCCC-CC-CC-C-----cc---c-----CC-C---CC--c--chh--------hhHHHH
Q 037221 1 MLQLAKLPHHHKG--FHITFVNFEN-KK-NM-A-----SQ---A-----LD-L---KH--S--RIV--------FYIDHN 46 (342)
Q Consensus 1 ~l~la~~L~~~~G--h~Vt~~~~~~-~~-~~-~-----~~---~-----~~-~---p~--~--~~~--------~~~~~~ 46 (342)
|++||++| +.|| ++|||++++. .. .+ . .. . ++ + |+ + +.. .+.+.+
T Consensus 20 ~l~lA~~L-a~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (468)
T PLN02207 20 FLEFARRL-IEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQSVEAYVYDVIEKNIPLV 98 (468)
T ss_pred HHHHHHHH-HhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccCHHHHHHHHHHhcchhH
Confidence 68999999 9998 9999999987 52 11 1 00 0 11 1 11 1 111 232222
Q ss_pred HHHHHHHhhC-C-CCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhh-------h---------hcc
Q 037221 47 RAFILFVNQN-G-NQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRT-------L---------KEK 108 (342)
Q Consensus 47 ~~li~~~~~~-~-~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-------~---------~~~ 108 (342)
++.++++-+. . .+.+++|||+|.+.+|+..+|+++|||++.|+++++.....+.+.+. . .-.
T Consensus 99 ~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP 178 (468)
T PLN02207 99 RNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSKDTSVFVRNSEEMLSIP 178 (468)
T ss_pred HHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccccccccCcCCCCCeEECC
Confidence 3333333111 1 11234999999999999999999999999999988765543322210 0 000
Q ss_pred cc-c--------------------------cccceEEEEcCchhhhHHHHHHHhh--hCCceeeccccccccccccc---
Q 037221 109 GL-V--------------------------ASKASGIIFHTFDALEVQVLDAISA--MFPNLFTIGPLQLLLYQNLW--- 156 (342)
Q Consensus 109 ~~-~--------------------------~~~~~~~l~~~~~~l~~~~~~~~~~--~~p~~~~vGpl~~~~~~~~~--- 156 (342)
++ . ..+++.+++|||++||+++++..+. ..|+++.|||++........
T Consensus 179 gl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~ 258 (468)
T PLN02207 179 GFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQD 258 (468)
T ss_pred CCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccc
Confidence 10 0 4567899999999999999988854 56889999999853321111
Q ss_pred -cchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECC-C---------C----C--------
Q 037221 157 -KKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRP-D---------L----F-------- 213 (342)
Q Consensus 157 -~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~-~---------~----~-------- 213 (342)
..++++.+||++++++++|||||||....+.+++++++.+|+.++++|+|+++. . . .
T Consensus 259 ~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~ 338 (468)
T PLN02207 259 LARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICG 338 (468)
T ss_pred cchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEE
Confidence 123579999999988999999999999999999999999999999999999873 1 1 0
Q ss_pred --CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEec--------ccccCCHhHH
Q 037221 214 --PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEIN--------GDEDGIRNVI 283 (342)
Q Consensus 214 --pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~--------~~~~~~~~~l 283 (342)
||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++++|+|+.+. ..+ +.++|
T Consensus 339 W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v--~~e~i 416 (468)
T PLN02207 339 WSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIV--NANEI 416 (468)
T ss_pred eCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcc--cHHHH
Confidence 999999999999999999999999999999999999999999999999866799999763 146 89999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 284 QKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 284 ~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
+++|+++|++ ++++||+||+++++.+++|+.+||||++++++|++++..
T Consensus 417 ~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 417 ETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 9999999973 245699999999999999999999999999999999864
No 14
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.6e-51 Score=389.54 Aligned_cols=316 Identities=23% Similarity=0.344 Sum_probs=251.2
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Ccc----c-------C---CC-CCc-----chh------------hhHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-ASQ----A-------L---DL-KHS-----RIV------------FYIDHN 46 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~----~-------~---~~-p~~-----~~~------------~~~~~~ 46 (342)
|++||+.| ++|||+|||+|++. ...+ +.. . + ++ |++ ++. .+.+.+
T Consensus 21 ~l~LAk~L-a~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~l~~~~~~~~~~~~~~l 99 (442)
T PLN02208 21 FLHLANKL-AEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPISMDNLLSEALDLTRDQV 99 (442)
T ss_pred HHHHHHHH-HhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Confidence 58999999 99999999999988 7655 311 1 1 22 322 111 233334
Q ss_pred HHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh---------hhhhc-------c--
Q 037221 47 RAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF---------RTLKE-------K-- 108 (342)
Q Consensus 47 ~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~---------~~~~~-------~-- 108 (342)
++++++ .+|||||+| +..|+..+|+.+|||++.|+++++.... +.+. +.+.. .
T Consensus 100 ~~~L~~-------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~~~~pglp~~~~~~~~~~~ 170 (442)
T PLN02208 100 EAAVRA-------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLGVPPPGYPSSKVLFRENDA 170 (442)
T ss_pred HHHHhh-------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccCCCCCCCCCcccccCHHHc
Confidence 444433 378999999 5789999999999999999998776443 2211 10100 0
Q ss_pred -------c-c---------ccccceEEEEcCchhhhHHHHHHHhhh-CCceeeccccccccccccccchhHHHHHHhcCC
Q 037221 109 -------G-L---------VASKASGIIFHTFDALEVQVLDAISAM-FPNLFTIGPLQLLLYQNLWKKETECLRWLDSKL 170 (342)
Q Consensus 109 -------~-~---------~~~~~~~~l~~~~~~l~~~~~~~~~~~-~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~ 170 (342)
. + ...+++.+++|||++||+.++++.+.. .|+++.|||++..... ....+.++.+||+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~-~~~~~~~~~~wLd~~~ 249 (442)
T PLN02208 171 HALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDT-SKPLEEQWSHFLSGFP 249 (442)
T ss_pred CcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCC-CCCCHHHHHHHHhcCC
Confidence 0 0 034678899999999999999888765 4789999999854321 1123578999999998
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC---------------------------CCCHHHHhCCCC
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD---------------------------LFPQEEVLNHPS 223 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~---------------------------~~pq~~lL~~~~ 223 (342)
++++|||||||...++.+++.+++.+++..+.+++|+++.+ +.||.+||+|++
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~ 329 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPS 329 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCc
Confidence 89999999999998899999999999888888898888632 119999999999
Q ss_pred CcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-c---ccCCHhHHHHHHHHHHcCC--hHH
Q 037221 224 IGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-D---EDGIRNVIQKSVRELLEGE--KGK 297 (342)
Q Consensus 224 ~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~---~~~~~~~l~~~i~~ll~~~--~~~ 297 (342)
+++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.++. + + +.++|+++|+++|+++ .|+
T Consensus 330 v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~--~~~~l~~ai~~~m~~~~e~g~ 407 (442)
T PLN02208 330 IGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF--SKESLSNAIKSVMDKDSDLGK 407 (442)
T ss_pred cCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC--cHHHHHHHHHHHhcCCchhHH
Confidence 999999999999999999999999999999999999998566999999975 3 8 9999999999999875 378
Q ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 298 QMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 298 ~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
++|+|++++++.+. ++|||++++++|++++.+
T Consensus 408 ~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 408 LVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 89999999999985 478999999999999854
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=7.7e-51 Score=386.97 Aligned_cols=321 Identities=25% Similarity=0.424 Sum_probs=257.0
Q ss_pred ChhhcchhhccC-CCeEEEEeCCC-CCCC-C--------cc-cCCC---C--------C-c-chh--------hhHHHHH
Q 037221 1 MLQLAKLPHHHK-GFHITFVNFEN-KKNM-A--------SQ-ALDL---K--------H-S-RIV--------FYIDHNR 47 (342)
Q Consensus 1 ~l~la~~L~~~~-Gh~Vt~~~~~~-~~~~-~--------~~-~~~~---p--------~-~-~~~--------~~~~~~~ 47 (342)
|++||++| +.+ |.+|||++++. ...+ . .. .+.. | + + +.. .+.+.++
T Consensus 20 ~l~LAk~L-a~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (470)
T PLN03015 20 ILELGNRL-SSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIFTKMVVKMRAMKPAVR 98 (470)
T ss_pred HHHHHHHH-HhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHHHHHHHHHHhchHHHH
Confidence 68999999 876 99999998776 4321 1 00 0100 1 1 1 111 5667778
Q ss_pred HHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCc-eEEEecchhhHhhhhhhhhhh-----h---c-------cccc
Q 037221 48 AFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLS-VVMFLTISACSFMGYKQFRTL-----K---E-------KGLV 111 (342)
Q Consensus 48 ~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~-----~---~-------~~~~ 111 (342)
++++++. .+|+|||+|.+.+|+..+|+++||| .+.+.++.++....+.+++.. . . .++.
T Consensus 99 ~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~vPg~p 173 (470)
T PLN03015 99 DAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYVDIKEPLKIPGCK 173 (470)
T ss_pred HHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccCCCCCeeeCCCCC
Confidence 8887763 3689999999999999999999999 577777666544322221100 0 0 0000
Q ss_pred ----------------------------cccceEEEEcCchhhhHHHHHHHhhh-------CCceeeccccccccccccc
Q 037221 112 ----------------------------ASKASGIIFHTFDALEVQVLDAISAM-------FPNLFTIGPLQLLLYQNLW 156 (342)
Q Consensus 112 ----------------------------~~~~~~~l~~~~~~l~~~~~~~~~~~-------~p~~~~vGpl~~~~~~~~~ 156 (342)
..+++.+++|||++||+.+++.++.. .++++.|||++.... ..
T Consensus 174 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~--~~ 251 (470)
T PLN03015 174 PVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNV--HV 251 (470)
T ss_pred CCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCcc--cc
Confidence 34678899999999999999988764 256999999974221 11
Q ss_pred cchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECC------------C--------C----
Q 037221 157 KKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRP------------D--------L---- 212 (342)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~------------~--------~---- 212 (342)
..+.+|.+||+.+++++||||||||...++.+++++++.+|+.++++|+|++++ + +
T Consensus 252 ~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er 331 (470)
T PLN03015 252 EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR 331 (470)
T ss_pred cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHh
Confidence 224479999999989999999999999999999999999999999999999852 1 1
Q ss_pred -----C------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEec-----ccc
Q 037221 213 -----F------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEIN-----GDE 276 (342)
Q Consensus 213 -----~------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~-----~~~ 276 (342)
. ||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.+. ..+
T Consensus 332 ~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 332 TRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred hccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 0 999999999999999999999999999999999999999999999999988999999995 158
Q ss_pred cCCHhHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037221 277 DGIRNVIQKSVRELLEG--EKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNES 331 (342)
Q Consensus 277 ~~~~~~l~~~i~~ll~~--~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l 331 (342)
+.++|+++|+++|.+ ++|+++|+||+++++..++|+++||||++++++|++.+
T Consensus 412 --~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 412 --GREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred --CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 999999999999963 56889999999999999999999999999999999986
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.8e-51 Score=392.21 Aligned_cols=328 Identities=28% Similarity=0.429 Sum_probs=257.4
Q ss_pred ChhhcchhhccCC--CeEEEEeCCC-CCCC-C--------c---c-cCCC---CCc--------chh----hhHHHHHHH
Q 037221 1 MLQLAKLPHHHKG--FHITFVNFEN-KKNM-A--------S---Q-ALDL---KHS--------RIV----FYIDHNRAF 49 (342)
Q Consensus 1 ~l~la~~L~~~~G--h~Vt~~~~~~-~~~~-~--------~---~-~~~~---p~~--------~~~----~~~~~~~~l 49 (342)
|++||++| +.|| ..|||++++. ...+ . + . .+.. |.+ .+. .+.+.+++.
T Consensus 19 ~l~LAk~L-a~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (481)
T PLN02554 19 TVELAKLL-VDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDPTFQSYIDNQKPKVRDA 97 (481)
T ss_pred HHHHHHHH-HhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccchHHHHHHHHHHHHHHHH
Confidence 68999999 9998 8999999986 4321 1 0 0 0100 211 111 455566666
Q ss_pred HHHHhhC---CCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhh-----------h-------cc
Q 037221 50 ILFVNQN---GNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTL-----------K-------EK 108 (342)
Q Consensus 50 i~~~~~~---~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~-----------~-------~~ 108 (342)
++++.+. ..+.+++|||+|.+..|+..+|+++|||++.|++++++....+.+++.. . -.
T Consensus 98 l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iP 177 (481)
T PLN02554 98 VAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKKYDVSELEDSEVELDVP 177 (481)
T ss_pred HHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccccCccccCCCCceeECC
Confidence 6665321 0112248999999999999999999999999999888765544332100 0 00
Q ss_pred cc--c-------------------------cccceEEEEcCchhhhHHHHHHHhh---hCCceeecccccc-cccccc--
Q 037221 109 GL--V-------------------------ASKASGIIFHTFDALEVQVLDAISA---MFPNLFTIGPLQL-LLYQNL-- 155 (342)
Q Consensus 109 ~~--~-------------------------~~~~~~~l~~~~~~l~~~~~~~~~~---~~p~~~~vGpl~~-~~~~~~-- 155 (342)
++ . ...++.+++|+++++|+.+...+.. ..|+++.|||+.. ......
T Consensus 178 gl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~ 257 (481)
T PLN02554 178 SLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSK 257 (481)
T ss_pred CCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccc
Confidence 00 0 3466789999999999998888775 4578999999942 221110
Q ss_pred ccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC---------------------C--
Q 037221 156 WKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD---------------------L-- 212 (342)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~---------------------~-- 212 (342)
...+.++.+|+++++++++|||||||+...+.+++++++.+|+..+++|||+++.. +
T Consensus 258 ~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 337 (481)
T PLN02554 258 DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFL 337 (481)
T ss_pred cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHH
Confidence 12345799999999888999999999988899999999999999999999998531 1
Q ss_pred ------------CCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEec-------
Q 037221 213 ------------FPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEIN------- 273 (342)
Q Consensus 213 ------------~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~------- 273 (342)
.||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.++
T Consensus 338 ~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 338 DRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred HHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccc
Confidence 1999999999999999999999999999999999999999999999965448999999985
Q ss_pred -----ccccCCHhHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 274 -----GDEDGIRNVIQKSVRELLE-GEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 274 -----~~~~~~~~~l~~~i~~ll~-~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
..+ +.++|+++|+++|+ |++ ||+||+++++.+++|+++||||++++++||+++.+.
T Consensus 418 ~~~~~~~~--~~e~l~~av~~vm~~~~~---~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 418 LAGEMETV--TAEEIERGIRCLMEQDSD---VRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred cccccCeE--cHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 257 99999999999997 544 999999999999999999999999999999998753
No 17
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.4e-50 Score=385.54 Aligned_cols=324 Identities=28% Similarity=0.458 Sum_probs=255.8
Q ss_pred Chhhcchhhcc-CCCeEEEEeCCC--CCCC-C-cc---c------CCC-CCc------chh--------hhHHHHHHHHH
Q 037221 1 MLQLAKLPHHH-KGFHITFVNFEN--KKNM-A-SQ---A------LDL-KHS------RIV--------FYIDHNRAFIL 51 (342)
Q Consensus 1 ~l~la~~L~~~-~Gh~Vt~~~~~~--~~~~-~-~~---~------~~~-p~~------~~~--------~~~~~~~~li~ 51 (342)
|++||++| +. +|++|||++++. ...+ + .. . .+| |++ ++. .+.+.++++++
T Consensus 20 ~l~La~~L-a~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 98 (455)
T PLN02152 20 SLRFARRL-IKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVNFERNGDKALSDFIE 98 (455)
T ss_pred HHHHHHHH-hhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHHHHHHHHhccHHHHHHHH
Confidence 68999999 85 799999999984 2222 2 10 1 122 332 111 45677888887
Q ss_pred HHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh----------hhh-----------hcc--
Q 037221 52 FVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF----------RTL-----------KEK-- 108 (342)
Q Consensus 52 ~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~----------~~~-----------~~~-- 108 (342)
++.. .+.+++|||+|.+.+|+..+|+++|||++.|++++++....++++ +.+ ...
T Consensus 99 ~l~~--~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~ 176 (455)
T PLN02152 99 ANLN--GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPNLPSLEIRDLPSFLSPSN 176 (455)
T ss_pred Hhhc--cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeecCCCCCCchHHCchhhcCCC
Confidence 7632 123469999999999999999999999999999988765543322 110 000
Q ss_pred --cc-c---------cc--cceEEEEcCchhhhHHHHHHHhhhCCceeeccccccccc---c---c---cccchhHHHHH
Q 037221 109 --GL-V---------AS--KASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLY---Q---N---LWKKETECLRW 165 (342)
Q Consensus 109 --~~-~---------~~--~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~---~---~---~~~~~~~~~~~ 165 (342)
.. . .. .++.+++|||++||+.+++.++.. +++.|||+..... . . .++.+.++.+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~w 254 (455)
T PLN02152 177 TNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNI--EMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLW 254 (455)
T ss_pred CchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcC--CEEEEcccCccccccccccCccccccccchHHHHH
Confidence 00 0 11 235899999999999999888652 5999999975321 0 0 01224579999
Q ss_pred HhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-------------------C----C---------
Q 037221 166 LDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD-------------------L----F--------- 213 (342)
Q Consensus 166 l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~-------------------~----~--------- 213 (342)
|+++++++||||||||...++.+++++++.+|+.++.+|+|++++. . .
T Consensus 255 Ld~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W 334 (455)
T PLN02152 255 LDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSW 334 (455)
T ss_pred hhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEee
Confidence 9999889999999999999999999999999999999999998631 0 1
Q ss_pred -CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc----cccCCHhHHHHHHH
Q 037221 214 -PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----DEDGIRNVIQKSVR 288 (342)
Q Consensus 214 -pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----~~~~~~~~l~~~i~ 288 (342)
||.+||+|+++++|||||||||++|++++|||+|++|+++||+.||+++++.+|+|+.+.. .+ +.++|+++|+
T Consensus 335 ~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~--~~e~l~~av~ 412 (455)
T PLN02152 335 CSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLV--ERGEIRRCLE 412 (455)
T ss_pred CCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcC--cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999655677777642 46 8999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 289 ELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 289 ~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
++|+|+ +++||+||+++++..++|.++||||++++++||+++.
T Consensus 413 ~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 413 AVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred HHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 999854 4569999999999999999999999999999999863
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-50 Score=383.22 Aligned_cols=320 Identities=22% Similarity=0.353 Sum_probs=255.1
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Cc---c-c-------C---CC-CCc-----chh------------hhHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-AS---Q-A-------L---DL-KHS-----RIV------------FYIDHN 46 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~---~-~-------~---~~-p~~-----~~~------------~~~~~~ 46 (342)
|++||+.| +.||++|||+|++. ...+ +. . . + +| |++ +++ .+.+.+
T Consensus 22 ~l~LAk~L-a~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~~~~~~~~a~~~~~~~~ 100 (453)
T PLN02764 22 FLFLANKL-AEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVTSADLLMSAMDLTRDQV 100 (453)
T ss_pred HHHHHHHH-HhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChhHHHHHHHHHHHhHHHH
Confidence 68999999 99999999999997 6544 21 0 0 1 22 322 111 234555
Q ss_pred HHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhh-----------hhh----h-----h
Q 037221 47 RAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQ-----------FRT----L-----K 106 (342)
Q Consensus 47 ~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-----------~~~----~-----~ 106 (342)
++++++. +|||||+|+ .+|+..+|+.+|||++.|++++++....+.. ++. + .
T Consensus 101 ~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~v~l~~~~l~ 172 (453)
T PLN02764 101 EVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYPSSKVLLRKQDAY 172 (453)
T ss_pred HHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCCCCCCCcccCcHhhCc
Confidence 5555553 679999995 8899999999999999999988765433211 110 0 0
Q ss_pred ---c--c-cc---c----------cccceEEEEcCchhhhHHHHHHHhhhC-CceeeccccccccccccccchhHHHHHH
Q 037221 107 ---E--K-GL---V----------ASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLLLYQNLWKKETECLRWL 166 (342)
Q Consensus 107 ---~--~-~~---~----------~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~~~~~~~~~~~~~~~~l 166 (342)
. . .. . ...++.+++|||++||+.++++.+... ++++.|||+...... ....+.+|.+||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~-~~~~~~~cl~WL 251 (453)
T PLN02764 173 TMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDK-TRELEERWVKWL 251 (453)
T ss_pred chhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccc-cccchhHHHHHH
Confidence 0 0 00 0 345678999999999999999997753 579999999743211 111246799999
Q ss_pred hcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC---------------------------CCCHHHHh
Q 037221 167 DSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD---------------------------LFPQEEVL 219 (342)
Q Consensus 167 ~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~---------------------------~~pq~~lL 219 (342)
|.+++++||||||||....+.+++.+++.+|+..+.+|+|++++. ..||.+||
T Consensus 252 D~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL 331 (453)
T PLN02764 252 SGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLIL 331 (453)
T ss_pred hCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHh
Confidence 999999999999999998999999999999999999999999741 11999999
Q ss_pred CCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc----cccCCHhHHHHHHHHHHcC--
Q 037221 220 NHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----DEDGIRNVIQKSVRELLEG-- 293 (342)
Q Consensus 220 ~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----~~~~~~~~l~~~i~~ll~~-- 293 (342)
+|+++++|||||||||++|++++|||||++|+++||+.||+++++.+|+|+.+.. .+ +.++|+++|+++|++
T Consensus 332 ~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~--~~e~i~~av~~vm~~~~ 409 (453)
T PLN02764 332 SHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWF--SKESLRDAINSVMKRDS 409 (453)
T ss_pred cCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCcc--CHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999667999998742 47 999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCC
Q 037221 294 EKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPKE 336 (342)
Q Consensus 294 ~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~~ 336 (342)
+.|+++|++++++++.+++ +|||+.++++|++++.+..+
T Consensus 410 ~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 410 EIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred hhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhcc
Confidence 4478899999999999975 89999999999999987543
No 19
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-50 Score=384.09 Aligned_cols=327 Identities=22% Similarity=0.303 Sum_probs=252.8
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C-c---c--c---C-----CC-CCc-----chh--------hhHHHHHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A-S---Q--A---L-----DL-KHS-----RIV--------FYIDHNRAFI 50 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~---~--~---~-----~~-p~~-----~~~--------~~~~~~~~li 50 (342)
|++||+.| ++||++|||+|++. ...+ + . . . + ++ |++ +++ ...+.+...+
T Consensus 21 mL~LAk~L-as~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~~~~~~~a~~~l~~~l 99 (446)
T PLN00414 21 YLHLANKL-AEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNSTKKPIFDAMDLLRDQI 99 (446)
T ss_pred HHHHHHHH-HhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhhHHHHHHHHHHHHHHHH
Confidence 68999999 99999999999988 6555 3 1 0 0 1 23 332 111 1122233333
Q ss_pred HHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhh-----------hhh----hhcc-----c-
Q 037221 51 LFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQ-----------FRT----LKEK-----G- 109 (342)
Q Consensus 51 ~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-----------~~~----~~~~-----~- 109 (342)
+++.. +.+|||||+|. .+|+..+|+.+|||++.|+++++.....+.+ ++. +... .
T Consensus 100 ~~~L~---~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~ 175 (446)
T PLN00414 100 EAKVR---ALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDYPLSKVALRGHDANVCSL 175 (446)
T ss_pred HHHHh---cCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCCCCCcCcCchhhcccchh
Confidence 33211 24789999995 8899999999999999999988764433321 110 0000 0
Q ss_pred c------------ccccceEEEEcCchhhhHHHHHHHhhhC-Cceeeccccccccccc-cccchhHHHHHHhcCCCCceE
Q 037221 110 L------------VASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLLLYQN-LWKKETECLRWLDSKLPNSVI 175 (342)
Q Consensus 110 ~------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~~~~~-~~~~~~~~~~~l~~~~~~~~V 175 (342)
+ ...+++.+++|||++||+.+++.++... ++++.|||+....... ....+++|.+|||.+++++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVv 255 (446)
T PLN00414 176 FANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVV 255 (446)
T ss_pred hcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceE
Confidence 0 0346778999999999999999988754 4699999997432111 111245799999999999999
Q ss_pred EEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC----C----C-------------------CHHHHhCCCCCccee
Q 037221 176 YVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD----L----F-------------------PQEEVLNHPSIGGFL 228 (342)
Q Consensus 176 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~----~----~-------------------pq~~lL~~~~~~~~I 228 (342)
||||||....+.+++.+++.+|+..+.+|+|++++. . . ||.+||+|+++++||
T Consensus 256 yvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fv 335 (446)
T PLN00414 256 FCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFV 335 (446)
T ss_pred EEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEE
Confidence 999999999999999999999999999999999642 1 0 999999999999999
Q ss_pred eccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc----cccCCHhHHHHHHHHHHcCC--hHHHHHHH
Q 037221 229 THSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----DEDGIRNVIQKSVRELLEGE--KGKQMRNK 302 (342)
Q Consensus 229 tHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----~~~~~~~~l~~~i~~ll~~~--~~~~~r~~ 302 (342)
|||||||++|++++|||||++|+++||+.||+++++++|+|+.+.. .+ ++++|+++++++|.++ .|+++|++
T Consensus 336 tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~--~~~~i~~~v~~~m~~~~e~g~~~r~~ 413 (446)
T PLN00414 336 NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWF--SKESLRDTVKSVMDKDSEIGNLVKRN 413 (446)
T ss_pred ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCcc--CHHHHHHHHHHHhcCChhhHHHHHHH
Confidence 9999999999999999999999999999999999668999999963 38 9999999999999874 37789999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCCCC
Q 037221 303 ASEWKKLVVEAAAPDGPSSKNLVKLVNESLLPKEHI 338 (342)
Q Consensus 303 a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~~~~ 338 (342)
++++++.+.+ +||++ ..+++|++++....++.
T Consensus 414 a~~~~~~~~~---~gg~s-s~l~~~v~~~~~~~~~~ 445 (446)
T PLN00414 414 HKKLKETLVS---PGLLS-GYADKFVEALENEVNNT 445 (446)
T ss_pred HHHHHHHHHc---CCCcH-HHHHHHHHHHHHhcccC
Confidence 9999999765 67734 44999999997665543
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-49 Score=381.85 Aligned_cols=290 Identities=29% Similarity=0.458 Sum_probs=235.2
Q ss_pred hhHHHHHHHHHHHhhC--CCCC-CccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhh-------------
Q 037221 41 FYIDHNRAFILFVNQN--GNQP-AVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRT------------- 104 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~--~~~~-~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~------------- 104 (342)
.+.+.++++++++... ..+. +++|||+|.+.+|+..+|+++|||++.|++++++....+.+++.
T Consensus 95 ~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~~~~~~~~~~~~ 174 (475)
T PLN02167 95 KMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERHRKTASEFDLSS 174 (475)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhccccccccccCC
Confidence 4555566666665321 1112 45999999999999999999999999999988765443322110
Q ss_pred ----hhcccc------------------c---------cccceEEEEcCchhhhHHHHHHHhhh---CCceeeccccccc
Q 037221 105 ----LKEKGL------------------V---------ASKASGIIFHTFDALEVQVLDAISAM---FPNLFTIGPLQLL 150 (342)
Q Consensus 105 ----~~~~~~------------------~---------~~~~~~~l~~~~~~l~~~~~~~~~~~---~p~~~~vGpl~~~ 150 (342)
..-.++ . ...++.+++|||++||+.+++.++.. +|+++.|||++..
T Consensus 175 ~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~ 254 (475)
T PLN02167 175 GEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSL 254 (475)
T ss_pred CCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEecccccc
Confidence 000000 0 34567899999999999999988654 4789999999853
Q ss_pred ccc---cc-ccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-------------C-
Q 037221 151 LYQ---NL-WKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD-------------L- 212 (342)
Q Consensus 151 ~~~---~~-~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~-------------~- 212 (342)
... .. ...+.++.+||+.++++++|||||||+...+.+++.+++.+|+..+++|||+++.+ +
T Consensus 255 ~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~ 334 (475)
T PLN02167 255 KDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGF 334 (475)
T ss_pred ccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHH
Confidence 221 11 11235799999999889999999999988899999999999999999999998521 1
Q ss_pred ---------C----CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-----
Q 037221 213 ---------F----PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----- 274 (342)
Q Consensus 213 ---------~----pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----- 274 (342)
+ ||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.+..
T Consensus 335 ~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~ 414 (475)
T PLN02167 335 MDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSA 414 (475)
T ss_pred HHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccc
Confidence 1 9999999999999999999999999999999999999999999999875489999998852
Q ss_pred ---cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 275 ---DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 275 ---~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
.+ ++++|+++|+++|.+++ +||+||+++++.+++|+.+||||++++++||+++...
T Consensus 415 ~~~~~--~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 415 YGEIV--KADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred cCCcc--cHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 47 89999999999998763 4999999999999999999999999999999998764
No 21
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-49 Score=378.95 Aligned_cols=274 Identities=32% Similarity=0.520 Sum_probs=226.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhh---------------
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTL--------------- 105 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~--------------- 105 (342)
.+.+.+.++++++.. +.+++|||+|.+.+|+..+|+++|||++.|++++++....+.+++..
T Consensus 95 ~~~~~~~~~l~~l~~---~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (451)
T PLN03004 95 FSNPSVHRTLFSLSR---NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTV 171 (451)
T ss_pred hhhHHHHHHHHhcCC---CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccccccccCCee
Confidence 456667777776521 23469999999999999999999999999999988766544332100
Q ss_pred hccccc----------------------------cccceEEEEcCchhhhHHHHHHHhhh--CCceeecccccccccc--
Q 037221 106 KEKGLV----------------------------ASKASGIIFHTFDALEVQVLDAISAM--FPNLFTIGPLQLLLYQ-- 153 (342)
Q Consensus 106 ~~~~~~----------------------------~~~~~~~l~~~~~~l~~~~~~~~~~~--~p~~~~vGpl~~~~~~-- 153 (342)
.-.++. ...++.+++|||++||+.+++.++.. .++++.|||+......
T Consensus 172 ~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~ 251 (451)
T PLN03004 172 HIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIED 251 (451)
T ss_pred cCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccc
Confidence 000000 34567899999999999999998764 2579999999742210
Q ss_pred ccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-----------C-C--------
Q 037221 154 NLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD-----------L-F-------- 213 (342)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~-----------~-~-------- 213 (342)
.....+.+|.+||+.++++++|||||||...++.+++++++.+|+.++++|+|+++.. . .
T Consensus 252 ~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~ 331 (451)
T PLN03004 252 RNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT 331 (451)
T ss_pred cccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc
Confidence 0011235699999999889999999999999999999999999999999999999832 0 1
Q ss_pred -----------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc----cccC
Q 037221 214 -----------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING----DEDG 278 (342)
Q Consensus 214 -----------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~----~~~~ 278 (342)
||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++++|+|+.++. .+
T Consensus 332 ~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~-- 409 (451)
T PLN03004 332 EDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFV-- 409 (451)
T ss_pred cCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCcc--
Confidence 9999999999999999999999999999999999999999999999999557899999963 47
Q ss_pred CHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 037221 279 IRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSK 322 (342)
Q Consensus 279 ~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~ 322 (342)
++++|+++|+++|+|++ ||+|++++++..++|+++||||++
T Consensus 410 ~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 410 SSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred CHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999877 999999999999999999999863
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.5e-41 Score=329.46 Aligned_cols=261 Identities=18% Similarity=0.281 Sum_probs=208.8
Q ss_pred CCCccEEEECCCcchHHHHHHHh-CCceEEEecchhhHh--h--h-h----hhhhhhh----------------------
Q 037221 59 QPAVSCIISDGFMPFTIEAAQQL-GLSVVMFLTISACSF--M--G-Y----KQFRTLK---------------------- 106 (342)
Q Consensus 59 ~~~pD~vI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~--~--~-~----~~~~~~~---------------------- 106 (342)
+.++|+||+|.+..|+..+|+.+ ++|.|.+++...... . . . .+.|...
T Consensus 134 ~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~ 213 (507)
T PHA03392 134 NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRL 213 (507)
T ss_pred CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999 999888876433211 0 1 0 0111000
Q ss_pred ---------------ccc----c-----ccccceEEEEcCchhhhHHHHHHHhhhCCceeeccccccccccccccchhHH
Q 037221 107 ---------------EKG----L-----VASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETEC 162 (342)
Q Consensus 107 ---------------~~~----~-----~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~ 162 (342)
... . ...+.+++++|+.+.++.+ ++..|++++|||++.+.. ...+.++++
T Consensus 214 ~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~~-----rp~~p~v~~vGgi~~~~~-~~~~l~~~l 287 (507)
T PHA03392 214 YNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDNN-----RPVPPSVQYLGGLHLHKK-PPQPLDDYL 287 (507)
T ss_pred HHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccCC-----CCCCCCeeeecccccCCC-CCCCCCHHH
Confidence 000 0 0345678999997655554 899999999999986431 112346788
Q ss_pred HHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHHhcCCCCEEEEECCC--------CC------CHHHHhCCCCCc
Q 037221 163 LRWLDSKLPNSVIYVNFGIAIV---VKKQQFIEVAMGLANSNHPFLWIIRPD--------LF------PQEEVLNHPSIG 225 (342)
Q Consensus 163 ~~~l~~~~~~~~V~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~iw~~~~~--------~~------pq~~lL~~~~~~ 225 (342)
.+|++.. ++++|||||||+.. .+.+.++.+++++++.+.+|+|.++++ ++ ||.+||+|++++
T Consensus 288 ~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~ 366 (507)
T PHA03392 288 EEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVK 366 (507)
T ss_pred HHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCC
Confidence 9999875 45899999999863 578899999999999999999998632 11 999999999999
Q ss_pred ceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCChHHHHHHHHH
Q 037221 226 GFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRELLEGEKGKQMRNKAS 304 (342)
Q Consensus 226 ~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~ 304 (342)
+||||||+||++||+++|||+|++|+++||+.||+|+ +++|+|+.++. ++ +.++|.++|+++++|++ ||+||+
T Consensus 367 ~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~~~--t~~~l~~ai~~vl~~~~---y~~~a~ 440 (507)
T PHA03392 367 AFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTVTV--SAAQLVLAIVDVIENPK---YRKNLK 440 (507)
T ss_pred EEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccCCc--CHHHHHHHHHHHhCCHH---HHHHHH
Confidence 9999999999999999999999999999999999999 89999999997 88 99999999999999988 999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 037221 305 EWKKLVVEAAAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 305 ~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
++++.+++ +.-+..+.+...++.+.+.+
T Consensus 441 ~ls~~~~~---~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 441 ELRHLIRH---QPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHhCC
Confidence 99999998 44344577778888886655
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-44 Score=354.01 Aligned_cols=259 Identities=25% Similarity=0.407 Sum_probs=176.6
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhh---------hhhhhhhh----------c---cccc------
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMG---------YKQFRTLK----------E---KGLV------ 111 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~---------~~~~~~~~----------~---~~~~------ 111 (342)
.++|++|+|.+.+|+..+|+.+++|.+.+.+........ ..+.|... . +.+.
T Consensus 118 ~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~ 197 (500)
T PF00201_consen 118 EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRF 197 (500)
T ss_dssp HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHH
T ss_pred hccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhcc
Confidence 378999999999999999999999998764332221000 00001000 0 0000
Q ss_pred --------------------------cccceEEEEcCchhhhHHHHHHHhhhCCceeeccccccccccccccchhHHHHH
Q 037221 112 --------------------------ASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRW 165 (342)
Q Consensus 112 --------------------------~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~ 165 (342)
..+.+.+++|+.+. +++|++..|++.++|+++..+.++ .+.++..|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~-----ld~prp~~p~v~~vGgl~~~~~~~---l~~~~~~~ 269 (500)
T PF00201_consen 198 IFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSHPS-----LDFPRPLLPNVVEVGGLHIKPAKP---LPEELWNF 269 (500)
T ss_dssp HHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE---------HHHHCTSTTGCGC-S----T---CHHHHHHH
T ss_pred ccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhcccc-----CcCCcchhhcccccCccccccccc---cccccchh
Confidence 22344556666544 455588889999999998765433 46678899
Q ss_pred HhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhcCCCCEEEEECCCCC-------------CHHHHhCCCCCcceeecc
Q 037221 166 LDSKLPNSVIYVNFGIAIV-VKKQQFIEVAMGLANSNHPFLWIIRPDLF-------------PQEEVLNHPSIGGFLTHS 231 (342)
Q Consensus 166 l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~iw~~~~~~~-------------pq~~lL~~~~~~~~ItHg 231 (342)
++...++++|||||||... .+.+..+.++++|++.+++|||++++... ||.+||+|+++++|||||
T Consensus 270 ~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHg 349 (500)
T PF00201_consen 270 LDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHG 349 (500)
T ss_dssp TSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES-
T ss_pred hhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcccceeeeecc
Confidence 9875678999999999974 44555888999999999999999976321 999999999999999999
Q ss_pred CCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 037221 232 GWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLV 310 (342)
Q Consensus 232 G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~ 310 (342)
|+||++||+++|||+|++|+++||+.||+++ ++.|+|+.++. ++ +.+++.++|+++|+|++ |++||+++++.+
T Consensus 350 G~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~~~--~~~~l~~ai~~vl~~~~---y~~~a~~ls~~~ 423 (500)
T PF00201_consen 350 GLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKNDL--TEEELRAAIREVLENPS---YKENAKRLSSLF 423 (500)
T ss_dssp -HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGGC---SHHHHHHHHHHHHHSHH---HHHHHHHHHHTT
T ss_pred ccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEecCC--cHHHHHHHHHHHHhhhH---HHHHHHHHHHHH
Confidence 9999999999999999999999999999999 89999999997 89 99999999999999998 999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCC
Q 037221 311 VEAAAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 311 ~~a~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
++. .-+..+.+...++.+.+.+
T Consensus 424 ~~~---p~~p~~~~~~~ie~v~~~~ 445 (500)
T PF00201_consen 424 RDR---PISPLERAVWWIEYVARHG 445 (500)
T ss_dssp T------------------------
T ss_pred hcC---CCCHHHHHHHHHHHHHhcC
Confidence 983 3444567777777776643
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.2e-35 Score=280.39 Aligned_cols=304 Identities=16% Similarity=0.207 Sum_probs=213.7
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Cc----ccCCC----C----C---cchh----hhHHHHHHHHHHHhhCCCC
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-AS----QALDL----K----H---SRIV----FYIDHNRAFILFVNQNGNQ 59 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~----~~~~~----p----~---~~~~----~~~~~~~~li~~~~~~~~~ 59 (342)
|+.||++| ++|||+|+|++++. .+.+ +. ..++. + . .+.. .........+..+.+....
T Consensus 12 ~l~lA~~L-~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (392)
T TIGR01426 12 TLGVVEEL-VARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDVLPQLEEAYKG 90 (392)
T ss_pred cHHHHHHH-HhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999 99999999999998 8777 41 00110 0 0 0111 1111122222222222223
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhh--h-----------hh-----hh-------h-hccccc--
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGY--K-----------QF-----RT-------L-KEKGLV-- 111 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~--~-----------~~-----~~-------~-~~~~~~-- 111 (342)
.+||+||+|.+.+++..+|+.+|||++.+++.+..+.... . .. .. . ...++.
T Consensus 91 ~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~ 170 (392)
T TIGR01426 91 DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVARLSALLEEHGITTP 170 (392)
T ss_pred CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHHHHHHHHHHHhCCCCC
Confidence 6899999999888999999999999999875432210000 0 00 00 0 000110
Q ss_pred ------cccceEEEEcCchhhhHHHHHHHhhhC-CceeeccccccccccccccchhHHHHHHhcCCCCceEEEEeccccc
Q 037221 112 ------ASKASGIIFHTFDALEVQVLDAISAMF-PNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIV 184 (342)
Q Consensus 112 ------~~~~~~~l~~~~~~l~~~~~~~~~~~~-p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~ 184 (342)
....+..+..+. ++++.....+ ++++++||+..... +...|....+++++||||+||+..
T Consensus 171 ~~~~~~~~~~~~~l~~~~-----~~l~~~~~~~~~~~~~~Gp~~~~~~--------~~~~~~~~~~~~~~v~vs~Gs~~~ 237 (392)
T TIGR01426 171 PVEFLAAPRRDLNLVYTP-----KAFQPAGETFDDSFTFVGPCIGDRK--------EDGSWERPGDGRPVVLISLGTVFN 237 (392)
T ss_pred CHHHHhcCCcCcEEEeCC-----hHhCCCccccCCCeEEECCCCCCcc--------ccCCCCCCCCCCCEEEEecCccCC
Confidence 111122333332 3333333333 47999999864321 112366666678999999999876
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCC-----------C------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEE
Q 037221 185 VKKQQFIEVAMGLANSNHPFLWIIRPDL-----------F------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMI 247 (342)
Q Consensus 185 ~~~~~~~~~~~al~~~~~~~iw~~~~~~-----------~------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i 247 (342)
...+.++.+++++...+.+++|..+... + |+.++|+++++ ||||||+||++|++++|+|+|
T Consensus 238 ~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v 315 (392)
T TIGR01426 238 NQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMV 315 (392)
T ss_pred CCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEE
Confidence 6667888899999999999998775321 1 89999999998 999999999999999999999
Q ss_pred ecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q 037221 248 CWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVK 326 (342)
Q Consensus 248 ~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~ 326 (342)
++|...||+.||+++ +++|+|+.+.. .+ +++++.++|+++++|++ |+++++++++.+++ .+|. +.+.+
T Consensus 316 ~~p~~~dq~~~a~~l-~~~g~g~~l~~~~~--~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~---~~~~--~~aa~ 384 (392)
T TIGR01426 316 AVPQGADQPMTARRI-AELGLGRHLPPEEV--TAEKLREAVLAVLSDPR---YAERLRKMRAEIRE---AGGA--RRAAD 384 (392)
T ss_pred ecCCcccHHHHHHHH-HHCCCEEEeccccC--CHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH---cCCH--HHHHH
Confidence 999999999999999 89999999886 78 99999999999999988 99999999999997 4555 56666
Q ss_pred HHHHH
Q 037221 327 LVNES 331 (342)
Q Consensus 327 ~i~~l 331 (342)
+|+.+
T Consensus 385 ~i~~~ 389 (392)
T TIGR01426 385 EIEGF 389 (392)
T ss_pred HHHHh
Confidence 66655
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4e-34 Score=272.53 Aligned_cols=306 Identities=17% Similarity=0.207 Sum_probs=205.9
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCCCcccCCC---CCc--------------------chh----hhHHHHHHHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNMASQALDL---KHS--------------------RIV----FYIDHNRAFILF 52 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~~~---p~~--------------------~~~----~~~~~~~~li~~ 52 (342)
|+.||++| ++|||+|+|++++. ...+...+++. +.. ... .........++.
T Consensus 17 ~l~la~~L-~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (401)
T cd03784 17 LVALAWAL-RAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLGALRLLRREAEAMLDD 95 (401)
T ss_pred HHHHHHHH-HHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 57899999 99999999999998 76662111111 100 000 122222333333
Q ss_pred HhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhh-----------------hhh---------hh
Q 037221 53 VNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQ-----------------FRT---------LK 106 (342)
Q Consensus 53 ~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-----------------~~~---------~~ 106 (342)
+.+.+.+.+||+||+|.+.+++..+|+++|||++.+++++........+ ... ..
T Consensus 96 ~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (401)
T cd03784 96 LVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYALLEAELWQDLLGAWLRARRR 175 (401)
T ss_pred HHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334789999999989999999999999999998876442211000 000 00
Q ss_pred ccccccc-----cceEEEEcCchhhhHHHHHHHhhhCC-ceeecc-ccccccccccccchhHHHHHHhcCCCCceEEEEe
Q 037221 107 EKGLVAS-----KASGIIFHTFDALEVQVLDAISAMFP-NLFTIG-PLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNF 179 (342)
Q Consensus 107 ~~~~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~p-~~~~vG-pl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~ 179 (342)
..++... ..+..+.... +.+..+++.++ +..++| ++..... ....+.++..|++. .+++|||+|
T Consensus 176 ~~gl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~--~~~~v~v~~ 246 (401)
T cd03784 176 RLGLPPLSLLDGSDVPELYGFS-----PAVLPPPPDWPRFDLVTGYGFRDVPY--NGPPPPELWLFLAA--GRPPVYVGF 246 (401)
T ss_pred hcCCCCCcccccCCCcEEEecC-----cccCCCCCCccccCcEeCCCCCCCCC--CCCCCHHHHHHHhC--CCCcEEEeC
Confidence 0011000 0111111111 11111223333 455664 3322211 12235567778764 568999999
Q ss_pred cccccC-CHHHHHHHHHHHhcCCCCEEEEECCC---------CC------CHHHHhCCCCCcceeeccCCchhHHHhhcC
Q 037221 180 GIAIVV-KKQQFIEVAMGLANSNHPFLWIIRPD---------LF------PQEEVLNHPSIGGFLTHSGWGSTIENLSAG 243 (342)
Q Consensus 180 Gs~~~~-~~~~~~~~~~al~~~~~~~iw~~~~~---------~~------pq~~lL~~~~~~~~ItHgG~~s~~eal~~G 243 (342)
||+... ..+.+..++++++..+.+++|..+.. ++ ||.++|+++++ ||||||+||++|++++|
T Consensus 247 Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~G 324 (401)
T cd03784 247 GSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAG 324 (401)
T ss_pred CCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcC
Confidence 999753 45677889999999999999988642 21 99999999998 99999999999999999
Q ss_pred CcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 037221 244 VPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSK 322 (342)
Q Consensus 244 vP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~ 322 (342)
||+|++|+..||+.||+++ ++.|+|+.++. .+ ++++|.++++++++++ ++++++++++.+++ ++|. .
T Consensus 325 vP~v~~P~~~dQ~~~a~~~-~~~G~g~~l~~~~~--~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~---~~g~--~ 392 (401)
T cd03784 325 VPQLVVPFFGDQPFWAARV-AELGAGPALDPREL--TAERLAAALRRLLDPP----SRRRAAALLRRIRE---EDGV--P 392 (401)
T ss_pred CCEEeeCCCCCcHHHHHHH-HHCCCCCCCCcccC--CHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh---ccCH--H
Confidence 9999999999999999999 89999999986 78 9999999999999854 66777777777765 4555 6
Q ss_pred HHHHHHHH
Q 037221 323 NLVKLVNE 330 (342)
Q Consensus 323 ~~~~~i~~ 330 (342)
.+.++|+.
T Consensus 393 ~~~~~ie~ 400 (401)
T cd03784 393 SAADVIER 400 (401)
T ss_pred HHHHHHhh
Confidence 66666654
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.7e-33 Score=273.96 Aligned_cols=313 Identities=28% Similarity=0.402 Sum_probs=212.8
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-Cccc------C-----------CC-CCc-c---hh----------hhHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-ASQA------L-----------DL-KHS-R---IV----------FYIDHN 46 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~------~-----------~~-p~~-~---~~----------~~~~~~ 46 (342)
|+.+|++| +++||+||++++.. .... .... . ++ |.. . .. .....+
T Consensus 22 ~~~la~~L-~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (496)
T KOG1192|consen 22 MLQLAKRL-AERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDISESLLELNKTCEDLL 100 (496)
T ss_pred HHHHHHHH-HHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999 99999999999876 5444 2110 0 01 111 0 00 222223
Q ss_pred HHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhC-CceEEEecchhhHhhhhhh-----hhhh--------------h
Q 037221 47 RAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLG-LSVVMFLTISACSFMGYKQ-----FRTL--------------K 106 (342)
Q Consensus 47 ~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~-----~~~~--------------~ 106 (342)
++.+..+... ...++|++|+|.+..|...+|...+ |+..++............+ .+.. .
T Consensus 101 ~~~~~~~~~~-~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 179 (496)
T KOG1192|consen 101 RDPLEKLLLL-KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPSPFSLSSGDDMSFPERV 179 (496)
T ss_pred hchHHHHHHh-hcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCcccCccccccCcHHHHH
Confidence 3323222211 1123999999998667777777765 8888877655543221110 0000 0
Q ss_pred ccc--------------------c-----------------ccccceEEEEcCchhhhHHHHHH-HhhhCCceeeccccc
Q 037221 107 EKG--------------------L-----------------VASKASGIIFHTFDALEVQVLDA-ISAMFPNLFTIGPLQ 148 (342)
Q Consensus 107 ~~~--------------------~-----------------~~~~~~~~l~~~~~~l~~~~~~~-~~~~~p~~~~vGpl~ 148 (342)
.+. . ...+.+..++|+.+. .++ +++..+++++|||+.
T Consensus 180 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~-----~~~~~~~~~~~v~~IG~l~ 254 (496)
T KOG1192|consen 180 PNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPL-----LDFEPRPLLPKVIPIGPLH 254 (496)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcc-----cCCCCCCCCCCceEECcEE
Confidence 000 0 012223344444322 223 244568999999999
Q ss_pred cccccccccchhHHHHHHhcCCCC--ceEEEEecccc---cCCHHHHHHHHHHHhcC-CCCEEEEECCC-----------
Q 037221 149 LLLYQNLWKKETECLRWLDSKLPN--SVIYVNFGIAI---VVKKQQFIEVAMGLANS-NHPFLWIIRPD----------- 211 (342)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~--~~V~vs~Gs~~---~~~~~~~~~~~~al~~~-~~~~iw~~~~~----------- 211 (342)
....... ...+.+|++..+.. ++|||||||+. .++.++..+++.+|+.. +++|+|+++++
T Consensus 255 ~~~~~~~---~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~ 331 (496)
T KOG1192|consen 255 VKDSKQK---SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPN 331 (496)
T ss_pred ecCcccc---ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCC
Confidence 7633211 11356777765554 89999999998 78999999999999999 88899999742
Q ss_pred ----CC------CHHHH-hCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCC
Q 037221 212 ----LF------PQEEV-LNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGI 279 (342)
Q Consensus 212 ----~~------pq~~l-L~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~ 279 (342)
++ ||.++ |+|+++++|||||||||++|++++|||+|++|+++||+.||+++ ++.|.|..+.+ ++ +
T Consensus 332 ~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i-~~~g~~~v~~~~~~--~ 408 (496)
T KOG1192|consen 332 RGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLL-VRHGGGGVLDKRDL--V 408 (496)
T ss_pred CCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHH-HhCCCEEEEehhhc--C
Confidence 12 99998 59999999999999999999999999999999999999999999 56666666664 55 5
Q ss_pred HhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 280 RNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 280 ~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
.+.+.+++.+++++++ |+++++++++.+++ ...+. +.+...++...+
T Consensus 409 ~~~~~~~~~~il~~~~---y~~~~~~l~~~~~~---~p~~~-~~~~~~~e~~~~ 455 (496)
T KOG1192|consen 409 SEELLEAIKEILENEE---YKEAAKRLSEILRD---QPISP-ELAVKWVEFVAR 455 (496)
T ss_pred cHHHHHHHHHHHcChH---HHHHHHHHHHHHHc---CCCCH-HHHHHHHHHHHh
Confidence 5559999999999998 99999999999997 45555 555644444433
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-31 Score=251.62 Aligned_cols=152 Identities=26% Similarity=0.349 Sum_probs=137.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECC-CC--------C------CHHHHhCCCCCcceeeccCCc
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRP-DL--------F------PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~-~~--------~------pq~~lL~~~~~~~~ItHgG~~ 234 (342)
.++++||+|+||.... .++++.+++++...+.++|..... +. . ||.++|+++++ ||||||+|
T Consensus 235 ~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~g 311 (406)
T COG1819 235 ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAG 311 (406)
T ss_pred CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCCHHHHhhhcCE--EEecCCcc
Confidence 4688999999999866 899999999999999999988755 11 1 99999999999 99999999
Q ss_pred hhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 037221 235 STIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEA 313 (342)
Q Consensus 235 s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a 313 (342)
|++|||++|||+|++|...||+.||.++ ++.|+|+.+.. .+ +++.++++|+++|+|+. |+++++++++.+++
T Consensus 312 tt~eaL~~gvP~vv~P~~~DQ~~nA~rv-e~~G~G~~l~~~~l--~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~- 384 (406)
T COG1819 312 TTSEALYAGVPLVVIPDGADQPLNAERV-EELGAGIALPFEEL--TEERLRAAVNEVLADDS---YRRAAERLAEEFKE- 384 (406)
T ss_pred hHHHHHHcCCCEEEecCCcchhHHHHHH-HHcCCceecCcccC--CHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhh-
Confidence 9999999999999999999999999999 99999999997 78 99999999999999998 99999999999998
Q ss_pred cCCCCchHHHHHHHHHHHhCCC
Q 037221 314 AAPDGPSSKNLVKLVNESLLPK 335 (342)
Q Consensus 314 ~~~~g~~~~~~~~~i~~l~~~~ 335 (342)
++|. +.+.+.++++...+
T Consensus 385 --~~g~--~~~a~~le~~~~~~ 402 (406)
T COG1819 385 --EDGP--AKAADLLEEFAREK 402 (406)
T ss_pred --cccH--HHHHHHHHHHHhcc
Confidence 5664 77888888866543
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.88 E-value=2.3e-21 Score=181.02 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=175.6
Q ss_pred hhhcchhhccCCCeEEEEeCCC--CCCC-CcccCCC---CC----c--chh------hhHHHHHHHHHHHhhCCCCCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN--KKNM-ASQALDL---KH----S--RIV------FYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~--~~~~-~~~~~~~---p~----~--~~~------~~~~~~~~li~~~~~~~~~~~pD 63 (342)
|++|++| .++||+|.|+++.. ...+ +..+++. +. . .+. .+...+...++-+++ .+||
T Consensus 19 la~a~~l-~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~kPd 93 (352)
T PRK12446 19 LAIIPYL-KEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRK----LKPD 93 (352)
T ss_pred HHHHHHH-HhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Confidence 6899999 99999999999877 3333 3223322 11 1 111 122222223333332 5899
Q ss_pred EEEECCCcch--HHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhC--C
Q 037221 64 CIISDGFMPF--TIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMF--P 139 (342)
Q Consensus 64 ~vI~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~--p 139 (342)
+||+...+.+ +..+|..+++|++.+......... +.+..+.++.+++ +|++ . ...+ .
T Consensus 94 vvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~----------nr~~~~~a~~v~~-~f~~---~-----~~~~~~~ 154 (352)
T PRK12446 94 VIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLA----------NKIALRFASKIFV-TFEE---A-----AKHLPKE 154 (352)
T ss_pred EEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHH----------HHHHHHhhCEEEE-Eccc---h-----hhhCCCC
Confidence 9998763432 688999999999987665432211 1122333444443 2211 1 1122 2
Q ss_pred ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCC-HHHHHHHHHHHhcCCCCEEEEECCCCC-----
Q 037221 140 NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVK-KQQFIEVAMGLANSNHPFLWIIRPDLF----- 213 (342)
Q Consensus 140 ~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~iw~~~~~~~----- 213 (342)
++.++|+......... ........+.-.+++++|+|..||.+... ++.+.+++..+.. +.+++|..+.+..
T Consensus 155 k~~~tG~Pvr~~~~~~--~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~ 231 (352)
T PRK12446 155 KVIYTGSPVREEVLKG--NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQ 231 (352)
T ss_pred CeEEECCcCCcccccc--cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHh
Confidence 5788998765432111 11122223333456789999999997533 2444445544432 4788888875421
Q ss_pred -------------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccc-----cchhhHHHHHHhHhceEEEecc-
Q 037221 214 -------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFE-----GDQMTNCRYTYKERGIGMEING- 274 (342)
Q Consensus 214 -------------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~-----~DQ~~na~~~~~~~G~G~~l~~- 274 (342)
.+.++++++++ +|||||.+|++|++++|+|+|++|+. +||..||+++ ++.|+|..+..
T Consensus 232 ~~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l-~~~g~~~~l~~~ 308 (352)
T PRK12446 232 NKEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF-ERQGYASVLYEE 308 (352)
T ss_pred hcCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-HHCCCEEEcchh
Confidence 35678999998 99999999999999999999999985 4899999999 89999999875
Q ss_pred cccCCHhHHHHHHHHHHcCChHHHHHHHHHH
Q 037221 275 DEDGIRNVIQKSVRELLEGEKGKQMRNKASE 305 (342)
Q Consensus 275 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~ 305 (342)
++ +++.+.+++.++++|++ .|++++++
T Consensus 309 ~~--~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 309 DV--TVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred cC--CHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 78 99999999999998865 36554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.85 E-value=1.2e-20 Score=174.32 Aligned_cols=249 Identities=19% Similarity=0.226 Sum_probs=160.6
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCCCccc----CCC----CC-c--chh-----------hhHHHHHHHHHHHhhCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNMASQA----LDL----KH-S--RIV-----------FYIDHNRAFILFVNQNGN 58 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~----~~~----p~-~--~~~-----------~~~~~~~~li~~~~~~~~ 58 (342)
+.||++| + ||+|+|++... ...+.+.. +.+ .. + +.. .....++++++.+++
T Consensus 19 ~~la~~L-r--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 92 (318)
T PF13528_consen 19 LALARAL-R--GHEVTFITSGPAPEFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLARLARRIRREIRWLRE--- 92 (318)
T ss_pred HHHHHHH-c--cCceEEEEcCCcHHHhccccCEEEccCceEeccCCccchHHHHHHHHHhhHHHHHHHHHHHHHHHh---
Confidence 5788888 4 89999999887 65552111 111 11 1 111 123334444444443
Q ss_pred CCCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhh-----hhhhcccc---ccccceEEEEcCchhhhHHH
Q 037221 59 QPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQF-----RTLKEKGL---VASKASGIIFHTFDALEVQV 130 (342)
Q Consensus 59 ~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~l~~~~~~l~~~~ 130 (342)
.+||+||+| +.+.+..+|+..|||++.+.............. ........ ....++..+.-+++
T Consensus 93 -~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 164 (318)
T PF13528_consen 93 -FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLHPNFWLPWDQDFGRLIERYIDRYHFPPADRRLALSFY------ 164 (318)
T ss_pred -cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcccccCCcchhhhHHHHHHHhhhhccCCcccceecCCcc------
Confidence 689999999 477788999999999999887765542111000 00000000 01222222322221
Q ss_pred HHHHhhhCCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCC-CCEEEEEC
Q 037221 131 LDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSN-HPFLWIIR 209 (342)
Q Consensus 131 ~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~iw~~~ 209 (342)
.+.....+..++||+........ - ..+++.|+|+||..... .++++++..+ ..+++. +
T Consensus 165 --~~~~~~~~~~~~~p~~~~~~~~~----------~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g 223 (318)
T PF13528_consen 165 --PPLPPFFRVPFVGPIIRPEIREL----------P--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-G 223 (318)
T ss_pred --ccccccccccccCchhccccccc----------C--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-c
Confidence 01111224667888765432111 0 12456799999998642 5566777665 566655 3
Q ss_pred CCC-------C--------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccc--ccchhhHHHHHHhHhceEEEe
Q 037221 210 PDL-------F--------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPF--EGDQMTNCRYTYKERGIGMEI 272 (342)
Q Consensus 210 ~~~-------~--------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~--~~DQ~~na~~~~~~~G~G~~l 272 (342)
... + ...++|+.+++ +|||||+||++|++++|+|+|++|. ..||..||+++ +++|+|+.+
T Consensus 224 ~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l-~~~G~~~~~ 300 (318)
T PF13528_consen 224 PNAADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL-EELGLGIVL 300 (318)
T ss_pred CCcccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-HHCCCeEEc
Confidence 322 1 46678999998 9999999999999999999999999 77999999999 999999999
Q ss_pred cc-cccCCHhHHHHHHHHH
Q 037221 273 NG-DEDGIRNVIQKSVREL 290 (342)
Q Consensus 273 ~~-~~~~~~~~l~~~i~~l 290 (342)
+. ++ +++.|+++|+++
T Consensus 301 ~~~~~--~~~~l~~~l~~~ 317 (318)
T PF13528_consen 301 SQEDL--TPERLAEFLERL 317 (318)
T ss_pred ccccC--CHHHHHHHHhcC
Confidence 85 88 999999998764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1e-16 Score=148.76 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=163.9
Q ss_pred hhhcchhhccCCC-eEEEEeCCC-CC-CC-CcccCCC---CCc------chh---------hhHHHHHHHHHHHhhCCCC
Q 037221 2 LQLAKLPHHHKGF-HITFVNFEN-KK-NM-ASQALDL---KHS------RIV---------FYIDHNRAFILFVNQNGNQ 59 (342)
Q Consensus 2 l~la~~L~~~~Gh-~Vt~~~~~~-~~-~~-~~~~~~~---p~~------~~~---------~~~~~~~~li~~~~~~~~~ 59 (342)
++|+++| .++|+ +|.+..+.. .+ .+ +...... +.+ .+. ......+.++++
T Consensus 18 lAl~~~l-~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~------- 89 (357)
T COG0707 18 LALAEEL-AKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQARKILKK------- 89 (357)
T ss_pred HHHHHHH-HhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 6789999 99999 688886665 33 33 3111111 111 110 223333445555
Q ss_pred CCccEEEECCC--cchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhh
Q 037221 60 PAVSCIISDGF--MPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAM 137 (342)
Q Consensus 60 ~~pD~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 137 (342)
.+||+||+-.. +..+..+|..+|||.+.+.......... ....+.++.+.. +|+.. ...
T Consensus 90 ~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~an----------k~~~~~a~~V~~-~f~~~--------~~~ 150 (357)
T COG0707 90 LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLAN----------KILSKFAKKVAS-AFPKL--------EAG 150 (357)
T ss_pred cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhH----------HHhHHhhceeee-ccccc--------ccc
Confidence 48999997443 3366778889999999986544332211 111222333332 22110 111
Q ss_pred CC--ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCC-HHHHHHHHHHHhcCCCCEEEEECCCCC-
Q 037221 138 FP--NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVK-KQQFIEVAMGLANSNHPFLWIIRPDLF- 213 (342)
Q Consensus 138 ~p--~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~iw~~~~~~~- 213 (342)
.+ +++.+|-....+-... +..-.. .+...++++|+|..||++... ++.+......+.. +..+++..+.+..
T Consensus 151 ~~~~~~~~tG~Pvr~~~~~~---~~~~~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~ 225 (357)
T COG0707 151 VKPENVVVTGIPVRPEFEEL---PAAEVR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLE 225 (357)
T ss_pred CCCCceEEecCcccHHhhcc---chhhhh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHH
Confidence 12 4677775433221110 111111 111226789999999997432 3444444444444 5677777765531
Q ss_pred -------------------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccc----cchhhHHHHHHhHhceEE
Q 037221 214 -------------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFE----GDQMTNCRYTYKERGIGM 270 (342)
Q Consensus 214 -------------------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~----~DQ~~na~~~~~~~G~G~ 270 (342)
++..+++.+|+ +||++|.+|+.|.+++|+|+|.+|.. .||..||+.+ ++.|.|+
T Consensus 226 ~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l-~~~gaa~ 302 (357)
T COG0707 226 ELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL-EKAGAAL 302 (357)
T ss_pred HHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH-HhCCCEE
Confidence 78889999998 99999999999999999999999973 3899999999 8999999
Q ss_pred Eecc-cccCCHhHHHHHHHHHHcCCh
Q 037221 271 EING-DEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 271 ~l~~-~~~~~~~~l~~~i~~ll~~~~ 295 (342)
.++. ++ +++.+.+.|.+++.++.
T Consensus 303 ~i~~~~l--t~~~l~~~i~~l~~~~~ 326 (357)
T COG0707 303 VIRQSEL--TPEKLAELILRLLSNPE 326 (357)
T ss_pred EeccccC--CHHHHHHHHHHHhcCHH
Confidence 9997 88 99999999999998754
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.75 E-value=1.2e-16 Score=147.92 Aligned_cols=253 Identities=16% Similarity=0.237 Sum_probs=145.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCCCcccC------CC-----CCc--chh-------hh-HHHHHHHHHHHhhCCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNMASQAL------DL-----KHS--RIV-------FY-IDHNRAFILFVNQNGNQ 59 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~------~~-----p~~--~~~-------~~-~~~~~~li~~~~~~~~~ 59 (342)
++|+++| .+ ||+|.|+++.. ...++...+ ++ +.+ +.. .+ ...+.+.++.+++
T Consensus 18 ~ala~~L-~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---- 91 (321)
T TIGR00661 18 VAIGEAL-KN-DYEVSYIASGRSKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSPKKAIRREINIIRE---- 91 (321)
T ss_pred HHHHHHH-hC-CCeEEEEEcCCHHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccccHHHHHHHHHHHHh----
Confidence 5789999 88 99999998877 655521111 11 111 111 01 1233334444443
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhh----hhccccccccceEEEEcCchhhhHHHHHHHh
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRT----LKEKGLVASKASGIIFHTFDALEVQVLDAIS 135 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 135 (342)
.+||+||+| +.+.+..+|+.+|||++.+..+............. .....+ ....+....+.+... .
T Consensus 92 ~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 161 (321)
T TIGR00661 92 YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTRYPLKTDLIVYPTMAALRIF-NERCERFIVPDYPFP--------Y 161 (321)
T ss_pred cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhcCCcccchhHHHHHHHHHHh-ccccceEeeecCCCC--------C
Confidence 689999999 68888999999999999877644321110000000 000000 112222222221100 0
Q ss_pred hhCCcee--eccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCC-CEE-EEECC-
Q 037221 136 AMFPNLF--TIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNH-PFL-WIIRP- 210 (342)
Q Consensus 136 ~~~p~~~--~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~-~~i-w~~~~- 210 (342)
...|... ..+|.. ..+..+|.. .+++.|+|.+|+... +.++++|++.+. .++ |....
T Consensus 162 ~~~p~~~~~~~~~~~----------~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i~~~~~~~ 223 (321)
T TIGR00661 162 TICPKIIKNMEGPLI----------RYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIANVKFVCYSYEVA 223 (321)
T ss_pred CCCccccccCCCccc----------chhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCCeEEEEeCCCCC
Confidence 1111110 011111 111222222 234668888887542 345666766553 444 22110
Q ss_pred -----CCC------C--HHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccccc--chhhHHHHHHhHhceEEEeccc
Q 037221 211 -----DLF------P--QEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEG--DQMTNCRYTYKERGIGMEINGD 275 (342)
Q Consensus 211 -----~~~------p--q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~G~G~~l~~~ 275 (342)
++. | ..++|+.+++ ||||||++|++|++++|+|++++|..+ ||..||+.+ ++.|+|+.++..
T Consensus 224 ~~~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~~ 300 (321)
T TIGR00661 224 KNSYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEYK 300 (321)
T ss_pred ccccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcChh
Confidence 111 3 5677888888 999999999999999999999999865 899999999 899999998742
Q ss_pred ccCCHhHHHHHHHHHHcCCh
Q 037221 276 EDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 276 ~~~~~~~l~~~i~~ll~~~~ 295 (342)
+. ++.+++.++++|++
T Consensus 301 ---~~-~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 301 ---EL-RLLEAILDIRNMKR 316 (321)
T ss_pred ---hH-HHHHHHHhcccccc
Confidence 23 55556666677765
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.65 E-value=2.2e-14 Score=134.66 Aligned_cols=274 Identities=15% Similarity=0.109 Sum_probs=157.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC--CcccCCC---CC----c-c-hh------hhHHHHHHHHHHHhhCCCCCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM--ASQALDL---KH----S-R-IV------FYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~--~~~~~~~---p~----~-~-~~------~~~~~~~~li~~~~~~~~~~~pD 63 (342)
+.|++.| .++||+|++++.+. .... ...+.+- +. + . .. .....+..+.+-+++ .+||
T Consensus 19 ~~la~~L-~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~----~~pD 93 (357)
T PRK00726 19 LALAEEL-KKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKR----FKPD 93 (357)
T ss_pred HHHHHHH-HhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Confidence 5799999 99999999999865 3221 2112111 11 1 1 00 122223333333332 5899
Q ss_pred EEEECCC--cchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCCce
Q 037221 64 CIISDGF--MPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNL 141 (342)
Q Consensus 64 ~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~ 141 (342)
+|++... ...+..+++..++|++.+....... . .+.+....++.++..+... +. .....++
T Consensus 94 vv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~---------~-~~r~~~~~~d~ii~~~~~~-----~~--~~~~~~i 156 (357)
T PRK00726 94 VVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPG---------L-ANKLLARFAKKVATAFPGA-----FP--EFFKPKA 156 (357)
T ss_pred EEEECCCcchhHHHHHHHHcCCCEEEEcCCCCcc---------H-HHHHHHHHhchheECchhh-----hh--ccCCCCE
Confidence 9998852 3345667888899998653221100 0 0011122344444333111 10 1112357
Q ss_pred eeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCC--CEEEEECCCC-------
Q 037221 142 FTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNH--PFLWIIRPDL------- 212 (342)
Q Consensus 142 ~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~iw~~~~~~------- 212 (342)
.++|.....+.... .. ...-+...++.++|++..|+... ......+.++++.... .++|.++...
T Consensus 157 ~vi~n~v~~~~~~~---~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~ 230 (357)
T PRK00726 157 VVTGNPVREEILAL---AA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAA 230 (357)
T ss_pred EEECCCCChHhhcc---cc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHH
Confidence 77776553322111 00 01111212234456665555421 1112222255444322 3344443211
Q ss_pred ------C-------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccc----ccchhhHHHHHHhHhceEEEecc-
Q 037221 213 ------F-------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPF----EGDQMTNCRYTYKERGIGMEING- 274 (342)
Q Consensus 213 ------~-------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~~G~G~~l~~- 274 (342)
+ +..++++.+++ +|+|+|.++++|++++|+|+|++|. .+||..|+..+ .+.|.|+.++.
T Consensus 231 ~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i-~~~~~g~~~~~~ 307 (357)
T PRK00726 231 YAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARAL-VDAGAALLIPQS 307 (357)
T ss_pred hhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH-HHCCCEEEEEcc
Confidence 1 56788899998 9999999999999999999999997 36899999999 78999999875
Q ss_pred cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 037221 275 DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVV 311 (342)
Q Consensus 275 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~ 311 (342)
++ +++.+.++|.++++|++ ++++..+-+..+.
T Consensus 308 ~~--~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~ 339 (357)
T PRK00726 308 DL--TPEKLAEKLLELLSDPE---RLEAMAEAARALG 339 (357)
T ss_pred cC--CHHHHHHHHHHHHcCHH---HHHHHHHHHHhcC
Confidence 67 79999999999999987 6665555444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.61 E-value=1.1e-13 Score=129.36 Aligned_cols=263 Identities=14% Similarity=0.107 Sum_probs=152.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC--CcccCCC---CC----c-c-h---h---hhHHHHHHHHHHHhhCCCCCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM--ASQALDL---KH----S-R-I---V---FYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~--~~~~~~~---p~----~-~-~---~---~~~~~~~~li~~~~~~~~~~~pD 63 (342)
+.|++.| .++||+|++++... ...- ....+.. |. . . + . .....+..+.+.+++ .+||
T Consensus 17 ~~la~~l-~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~pD 91 (350)
T cd03785 17 LALAEEL-RERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILKK----FKPD 91 (350)
T ss_pred HHHHHHH-HhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Confidence 4789999 99999999998765 3221 1111111 11 1 1 1 1 111222223333332 5899
Q ss_pred EEEECCC--cchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCCce
Q 037221 64 CIISDGF--MPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNL 141 (342)
Q Consensus 64 ~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~ 141 (342)
+|+++.. .+.+..+|...|+|++........ ... +....+.++.+++.+-... +. -...++
T Consensus 92 vI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~---------~~~-~~~~~~~~~~vi~~s~~~~-----~~--~~~~~~ 154 (350)
T cd03785 92 VVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVP---------GLA-NRLLARFADRVALSFPETA-----KY--FPKDKA 154 (350)
T ss_pred EEEECCCCcchHHHHHHHHhCCCEEEEcCCCCc---------cHH-HHHHHHhhCEEEEcchhhh-----hc--CCCCcE
Confidence 9997642 335677888999999864322110 000 1111334566665442111 11 011256
Q ss_pred eeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCC-HHHHHHHHHHHhcCCCCEEEEECCC---------
Q 037221 142 FTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVK-KQQFIEVAMGLANSNHPFLWIIRPD--------- 211 (342)
Q Consensus 142 ~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~iw~~~~~--------- 211 (342)
.++|.......... ... ...+...+++++|++..|+..... .+.+...+..+.+.+..++|..+..
T Consensus 155 ~~i~n~v~~~~~~~---~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~ 230 (350)
T cd03785 155 VVTGNPVREEILAL---DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAY 230 (350)
T ss_pred EEECCCCchHHhhh---hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHH
Confidence 66776443221100 111 222332334455666666654211 1222233344443344455555432
Q ss_pred -----CC-------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccc----ccchhhHHHHHHhHhceEEEecc-
Q 037221 212 -----LF-------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPF----EGDQMTNCRYTYKERGIGMEING- 274 (342)
Q Consensus 212 -----~~-------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~~G~G~~l~~- 274 (342)
++ +..++|+.+++ +|+++|.+|++||+++|+|+|+.|. ..+|..|+..+ .+.|.|+.++.
T Consensus 231 ~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l-~~~g~g~~v~~~ 307 (350)
T cd03785 231 EELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARAL-VKAGAAVLIPQE 307 (350)
T ss_pred hccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH-HhCCCEEEEecC
Confidence 11 55678999998 9999999999999999999999985 36789999999 78899999885
Q ss_pred cccCCHhHHHHHHHHHHcCCh
Q 037221 275 DEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 275 ~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+. +++++.++++++++|++
T Consensus 308 ~~--~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 308 EL--TPERLAAALLELLSDPE 326 (350)
T ss_pred CC--CHHHHHHHHHHHhcCHH
Confidence 46 89999999999998765
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.54 E-value=2.7e-13 Score=128.39 Aligned_cols=300 Identities=9% Similarity=-0.010 Sum_probs=164.6
Q ss_pred hhcchhhccCCCeEEEEeCCC---CCCCCcccCCC---CCcch-------hhhHHHHHHHHHHHhhCCCCCCccEEEE-C
Q 037221 3 QLAKLPHHHKGFHITFVNFEN---KKNMASQALDL---KHSRI-------VFYIDHNRAFILFVNQNGNQPAVSCIIS-D 68 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~---~~~~~~~~~~~---p~~~~-------~~~~~~~~~li~~~~~~~~~~~pD~vI~-D 68 (342)
+|+++| .++|++|.|++... .+..-+..++. +...+ +.....+.++.+.+++ .+||+||. |
T Consensus 23 al~~~l-~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~~l~~----~kPd~vi~~g 97 (385)
T TIGR00215 23 GLRQQL-KEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQLAKQ----AKPDLLVGID 97 (385)
T ss_pred HHHHHH-HhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEEeC
Confidence 578999 99999999998763 21111111221 11111 1223333334444443 68999994 5
Q ss_pred CCcch--HHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCCceeeccc
Q 037221 69 GFMPF--TIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGP 146 (342)
Q Consensus 69 ~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGp 146 (342)
.-.+. ...+|+.+|||++.+.+ +-.+.. ....+....+.++.+++.. +.+... .+...-+..++|.
T Consensus 98 ~~~~~~~~a~aa~~~gip~v~~i~-P~~waw------~~~~~r~l~~~~d~v~~~~--~~e~~~---~~~~g~~~~~vGn 165 (385)
T TIGR00215 98 APDFNLTKELKKKDPGIKIIYYIS-PQVWAW------RKWRAKKIEKATDFLLAIL--PFEKAF---YQKKNVPCRFVGH 165 (385)
T ss_pred CCCccHHHHHHHhhCCCCEEEEeC-CcHhhc------CcchHHHHHHHHhHhhccC--CCcHHH---HHhcCCCEEEECC
Confidence 32223 33388999999997642 111110 0011112223344444322 112221 1222124667885
Q ss_pred cccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcC-----CCCEEEEECCC----------
Q 037221 147 LQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS-----NHPFLWIIRPD---------- 211 (342)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~iw~~~~~---------- 211 (342)
-.............+..+.+.-.+++++|.+..||....-.+....++++++.. +.++++.....
T Consensus 166 Pv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~ 245 (385)
T TIGR00215 166 PLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIK 245 (385)
T ss_pred chhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHH
Confidence 543322110011222222233334567788877887532233344444443321 23444332110
Q ss_pred -----C--C-----CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEec----cccc---------chhhHHHHHHhHh
Q 037221 212 -----L--F-----PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICW----PFEG---------DQMTNCRYTYKER 266 (342)
Q Consensus 212 -----~--~-----pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~----P~~~---------DQ~~na~~~~~~~ 266 (342)
. + ....++..+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|+..+ ...
T Consensus 246 ~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil-~~~ 321 (385)
T TIGR00215 246 AEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL-ANR 321 (385)
T ss_pred HHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh-cCC
Confidence 0 0 45678899998 9999999988 999999999999 7642 277799999 677
Q ss_pred ceEEEecc-cccCCHhHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037221 267 GIGMEING-DEDGIRNVIQKSVRELLEGE----KGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLV 328 (342)
Q Consensus 267 G~G~~l~~-~~~~~~~~l~~~i~~ll~~~----~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i 328 (342)
++...+.. +. +++.|.+.+.+++.|+ + ++++..+--.++++...++|.+.+.+..++
T Consensus 322 ~~~pel~q~~~--~~~~l~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 322 LLVPELLQEEC--TPHPLAIALLLLLENGLKAYK---EMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred ccchhhcCCCC--CHHHHHHHHHHHhcCCcccHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 87766654 78 9999999999999998 6 444444444444443445677655555443
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.52 E-value=1.3e-12 Score=121.97 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=67.3
Q ss_pred CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccc---cchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFE---GDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~---~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ 289 (342)
+..++|+.+++ +|+++|.++++|++++|+|+|+.|.. .+|..|+..+ ++.|.|..++. +. +++.+.+++++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~~~~--~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQKEL--LPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEecccC--CHHHHHHHHHH
Confidence 46778999998 99999988999999999999998863 4788899999 78999988874 56 79999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
+++|++
T Consensus 318 ll~~~~ 323 (348)
T TIGR01133 318 LLLDPA 323 (348)
T ss_pred HHcCHH
Confidence 998876
No 36
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.42 E-value=2.5e-11 Score=115.22 Aligned_cols=266 Identities=13% Similarity=0.049 Sum_probs=156.2
Q ss_pred hhhcchhhcc--CCCeEE---EEeCCC--CCCC-Cccc-CCC-CCcchh------------h-hHHHH---HHHHHHHhh
Q 037221 2 LQLAKLPHHH--KGFHIT---FVNFEN--KKNM-ASQA-LDL-KHSRIV------------F-YIDHN---RAFILFVNQ 55 (342)
Q Consensus 2 l~la~~L~~~--~Gh~Vt---~~~~~~--~~~~-~~~~-~~~-p~~~~~------------~-~~~~~---~~li~~~~~ 55 (342)
+++|++| .+ +|++|. |+++.. .... +..+ +.. |.+.+. . +...+ ..+++++.
T Consensus 14 ~ai~~~l-~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~- 91 (396)
T TIGR03492 14 ARIAKAL-LQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQWRALRKWA- 91 (396)
T ss_pred HHHHHHH-HhhCCCCCeEEeCcccCCHHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHHHHHHHHh-
Confidence 5789999 87 699999 999987 3333 3211 111 333111 1 22222 23444442
Q ss_pred CCCCCCccEEEECCCcchHHHHHHHhCCceEEEec---chhh------Hhhhh-hhhhh----hh-ccccccccceEEEE
Q 037221 56 NGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLT---ISAC------SFMGY-KQFRT----LK-EKGLVASKASGIIF 120 (342)
Q Consensus 56 ~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~---~~~~------~~~~~-~~~~~----~~-~~~~~~~~~~~~l~ 120 (342)
.+||+||.-. .+....+|...|+|++.+.+ .... ..... ..++. .+ .+.+..+.++.+++
T Consensus 92 ----~~p~~v~~~G-g~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~ 166 (396)
T TIGR03492 92 ----KKGDLIVAVG-DIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFV 166 (396)
T ss_pred ----hcCCEEEEEC-cHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeC
Confidence 2899998654 33388899999999998432 1110 00000 00000 00 12333456666666
Q ss_pred cCchhhhHHHHHHHhhhCCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhc-
Q 037221 121 HTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLAN- 199 (342)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~- 199 (342)
.. +. ..++++...-++.++|-...+..... ... -+ .+++++|.+--||....-.+.+..++++++.
T Consensus 167 ~~--~~---t~~~l~~~g~k~~~vGnPv~d~l~~~---~~~---~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L 233 (396)
T TIGR03492 167 RD--RL---TARDLRRQGVRASYLGNPMMDGLEPP---ERK---PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEAL 233 (396)
T ss_pred CC--HH---HHHHHHHCCCeEEEeCcCHHhcCccc---ccc---cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHH
Confidence 54 22 22333333237999996654432111 100 11 2345678888888853222233344444433
Q ss_pred ---CCCCEEEEECCCC-------------------------------C-------CHHHHhCCCCCcceeeccCCchhHH
Q 037221 200 ---SNHPFLWIIRPDL-------------------------------F-------PQEEVLNHPSIGGFLTHSGWGSTIE 238 (342)
Q Consensus 200 ---~~~~~iw~~~~~~-------------------------------~-------pq~~lL~~~~~~~~ItHgG~~s~~e 238 (342)
.+..|++.+.++. . +..+++..+++ +|+.+|..| .|
T Consensus 234 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E 310 (396)
T TIGR03492 234 PDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQ 310 (396)
T ss_pred hhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HH
Confidence 2556776652110 1 34567888898 999999766 99
Q ss_pred HhhcCCcEEecccccchhhHHHHHHhHh----ceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 239 NLSAGVPMICWPFEGDQMTNCRYTYKER----GIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 239 al~~GvP~i~~P~~~DQ~~na~~~~~~~----G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+...|+|+|++|.-..|. |+..+ ++. |.++.+.. . +.+.+.+++.++++|++
T Consensus 311 ~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~~-~--~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 311 AVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLAS-K--NPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecCC-C--CHHHHHHHHHHHHcCHH
Confidence 999999999999877776 98877 553 76777653 4 67999999999999876
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.39 E-value=2.3e-10 Score=108.53 Aligned_cols=212 Identities=14% Similarity=0.046 Sum_probs=123.2
Q ss_pred CCccEEEECCCcc---hHHHHHHH-----hCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHH
Q 037221 60 PAVSCIISDGFMP---FTIEAAQQ-----LGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVL 131 (342)
Q Consensus 60 ~~pD~vI~D~~~~---~~~~~A~~-----lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 131 (342)
.+||+|++....+ .+..++.. .++|++.+.+-.... ......+.++.+++.+-. ..
T Consensus 99 ~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~-----------~~~w~~~~~d~~~~~s~~-----~~ 162 (382)
T PLN02605 99 YKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC-----------HPTWFHKGVTRCFCPSEE-----VA 162 (382)
T ss_pred cCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc-----------CcccccCCCCEEEECCHH-----HH
Confidence 5899999863221 22333333 389988765432100 011224567777776621 11
Q ss_pred HHHh-hhCC--ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCC-HHHHHHHHHHHh-----cCCC
Q 037221 132 DAIS-AMFP--NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVK-KQQFIEVAMGLA-----NSNH 202 (342)
Q Consensus 132 ~~~~-~~~p--~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~-----~~~~ 202 (342)
+... ...+ ++..+|.-..............+.+-+.-.+++++|++..|+..... ...++.+...+. ..+.
T Consensus 163 ~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~ 242 (382)
T PLN02605 163 KRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIG 242 (382)
T ss_pred HHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCc
Confidence 1111 1122 46666644322111111112223333333345567777666654322 222233322221 1234
Q ss_pred CEEEEECCCC--------------C-------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchh-hHHH
Q 037221 203 PFLWIIRPDL--------------F-------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQM-TNCR 260 (342)
Q Consensus 203 ~~iw~~~~~~--------------~-------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~-~na~ 260 (342)
++++..+.+. + ...+++..+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+.
T Consensus 243 ~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~ 320 (382)
T PLN02605 243 QVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVP 320 (382)
T ss_pred eEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHH
Confidence 5556554321 0 46788999998 999999999999999999999988665565 6999
Q ss_pred HHHhHhceEEEecccccCCHhHHHHHHHHHHcC-Ch
Q 037221 261 YTYKERGIGMEINGDEDGIRNVIQKSVRELLEG-EK 295 (342)
Q Consensus 261 ~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~-~~ 295 (342)
.+ .+.|.|+.+. +++++.++|.+++.| ++
T Consensus 321 ~i-~~~g~g~~~~-----~~~~la~~i~~ll~~~~~ 350 (382)
T PLN02605 321 YV-VDNGFGAFSE-----SPKEIARIVAEWFGDKSD 350 (382)
T ss_pred HH-HhCCceeecC-----CHHHHHHHHHHHHcCCHH
Confidence 88 7889998763 899999999999987 44
No 38
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.39 E-value=1.7e-14 Score=120.75 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=65.8
Q ss_pred CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccccc----chhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEG----DQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVR 288 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~----DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~ 288 (342)
.+.+++..+++ +|||||.||++|++.+|+|+|++|... +|..||..+ ++.|+|+.+.. .. +.+.|.+.|.
T Consensus 65 ~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~~~--~~~~L~~~i~ 139 (167)
T PF04101_consen 65 NMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDESEL--NPEELAEAIE 139 (167)
T ss_dssp SHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECCC---SCCCHHHHHH
T ss_pred hHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcccC--CHHHHHHHHH
Confidence 38899999998 999999999999999999999999988 999999999 89999999886 66 7899999999
Q ss_pred HHHcCCh
Q 037221 289 ELLEGEK 295 (342)
Q Consensus 289 ~ll~~~~ 295 (342)
+++.++.
T Consensus 140 ~l~~~~~ 146 (167)
T PF04101_consen 140 ELLSDPE 146 (167)
T ss_dssp CHCCCHH
T ss_pred HHHcCcH
Confidence 9998875
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.38 E-value=9.7e-11 Score=111.38 Aligned_cols=209 Identities=17% Similarity=0.163 Sum_probs=123.1
Q ss_pred CCccEEEECCCcchHHHH--HHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhh
Q 037221 60 PAVSCIISDGFMPFTIEA--AQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAM 137 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~--A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 137 (342)
.+||+||++.-.+....+ +..++||++.+.+.... ......+..+.+++.+- ...... .+..
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~~------------~~~w~~~~~d~~~v~s~-~~~~~l---~~~g 166 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRL------------HKNWITPYSTRYYVATK-ETKQDF---IDVG 166 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCCc------------ccccccCCCCEEEECCH-HHHHHH---HHcC
Confidence 589999997433222111 23458998765443210 01112456677777652 221111 1111
Q ss_pred CC--ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH-hc-CCCCEEEEECCCC-
Q 037221 138 FP--NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGL-AN-SNHPFLWIIRPDL- 212 (342)
Q Consensus 138 ~p--~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al-~~-~~~~~iw~~~~~~- 212 (342)
.+ ++..+|-.....-... ........-+.-.+++++|++..|+.+. .+.+..+++++ +. .+.++++..+.+.
T Consensus 167 i~~~ki~v~GiPv~~~f~~~-~~~~~~~~~~~l~~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~ 243 (391)
T PRK13608 167 IDPSTVKVTGIPIDNKFETP-IDQKQWLIDNNLDPDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE 243 (391)
T ss_pred CCHHHEEEECeecChHhccc-ccHHHHHHHcCCCCCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH
Confidence 22 3455553221110000 0111121222222346678888888762 13344444443 22 2455655554321
Q ss_pred --------------C-------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEec-ccccchhhHHHHHHhHhceEE
Q 037221 213 --------------F-------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICW-PFEGDQMTNCRYTYKERGIGM 270 (342)
Q Consensus 213 --------------~-------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~~G~G~ 270 (342)
+ ...++++.+|+ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+
T Consensus 244 l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~ 320 (391)
T PRK13608 244 LKRSLTAKFKSNENVLILGYTKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGK 320 (391)
T ss_pred HHHHHHHHhccCCCeEEEeccchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEE
Confidence 0 45578899998 99998888999999999999998 7777788999999 8999998
Q ss_pred EecccccCCHhHHHHHHHHHHcCCh
Q 037221 271 EINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 271 ~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
... +.+++.++|.++++|++
T Consensus 321 ~~~-----~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 321 IAD-----TPEEAIKIVASLTNGNE 340 (391)
T ss_pred EeC-----CHHHHHHHHHHHhcCHH
Confidence 865 88899999999998875
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.37 E-value=1.9e-11 Score=110.75 Aligned_cols=223 Identities=16% Similarity=0.208 Sum_probs=125.7
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC---CcccCCC---CCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM---ASQALDL---KHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFT 74 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~---~~~~~~~---p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~ 74 (342)
+.||++| .++||+|+|++... .... +..+++- |... .......++++.+++ .+||+||.|.+....
T Consensus 21 l~LA~~l-~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~----~~~d~vV~D~y~~~~ 93 (279)
T TIGR03590 21 LTLARAL-HAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDES--SRYDDALELINLLEE----EKFDILIVDHYGLDA 93 (279)
T ss_pred HHHHHHH-HHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCC--chhhhHHHHHHHHHh----cCCCEEEEcCCCCCH
Confidence 6899999 99999999999876 4322 1111110 1110 011223334444432 479999999865533
Q ss_pred HH--HHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCC--ceeeccccccc
Q 037221 75 IE--AAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFP--NLFTIGPLQLL 150 (342)
Q Consensus 75 ~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p--~~~~vGpl~~~ 150 (342)
.. ..+..+.+.+.+.-.... ...++.++..+.. .+ ...+ +...| ..++.||=+..
T Consensus 94 ~~~~~~k~~~~~l~~iDD~~~~-----------------~~~~D~vin~~~~-~~--~~~y-~~~~~~~~~~l~G~~Y~~ 152 (279)
T TIGR03590 94 DWEKLIKEFGRKILVIDDLADR-----------------PHDCDLLLDQNLG-AD--ASDY-QGLVPANCRLLLGPSYAL 152 (279)
T ss_pred HHHHHHHHhCCeEEEEecCCCC-----------------CcCCCEEEeCCCC-cC--HhHh-cccCcCCCeEEecchHHh
Confidence 22 223345555554311100 1134444443321 11 1111 11112 36777872211
Q ss_pred cccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcC--CCCEEEEECCCCC---------------
Q 037221 151 LYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS--NHPFLWIIRPDLF--------------- 213 (342)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~iw~~~~~~~--------------- 213 (342)
-.+..+.. .......++.+.|+|+||...... ....++++|... +.++.+++++...
T Consensus 153 lr~eF~~~----~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i 226 (279)
T TIGR03590 153 LREEFYQL----ATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNI 226 (279)
T ss_pred hhHHHHHh----hHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCE
Confidence 11011000 000111112357999999765322 445566666653 4566777765321
Q ss_pred -------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHH
Q 037221 214 -------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRY 261 (342)
Q Consensus 214 -------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~ 261 (342)
.+.++|..+++ +||+|| +|++|++++|+|+|++|...+|..||+.
T Consensus 227 ~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 227 ILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 45689999999 999999 9999999999999999999999999975
No 41
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.32 E-value=4.5e-10 Score=106.34 Aligned_cols=208 Identities=15% Similarity=0.146 Sum_probs=124.1
Q ss_pred CCccEEEECCCcchHHHH--HHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhh
Q 037221 60 PAVSCIISDGFMPFTIEA--AQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAM 137 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~--A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 137 (342)
.+||+||++.-.+....+ +..++||++.+.+.... .....++.++.+++.+-. ..+.....
T Consensus 103 ~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~------------~~~~~~~~ad~i~~~s~~-----~~~~l~~~ 165 (380)
T PRK13609 103 EKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCL------------HKIWVHREVDRYFVATDH-----VKKVLVDI 165 (380)
T ss_pred hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCC------------CcccccCCCCEEEECCHH-----HHHHHHHc
Confidence 589999998533333322 23456887743321100 111225577777776631 11222221
Q ss_pred -CC--ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcC-CCCEEEEECCCC-
Q 037221 138 -FP--NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS-NHPFLWIIRPDL- 212 (342)
Q Consensus 138 -~p--~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~- 212 (342)
.+ ++..+|-.....-... ........-+.-.++++++++..|+.... +.+..+++++... +.++++..+.+.
T Consensus 166 gi~~~ki~v~G~p~~~~f~~~-~~~~~~~~~~~l~~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~ 242 (380)
T PRK13609 166 GVPPEQVVETGIPIRSSFELK-INPDIIYNKYQLCPNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA 242 (380)
T ss_pred CCChhHEEEECcccChHHcCc-CCHHHHHHHcCCCCCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH
Confidence 12 4666653221110000 01111222222223456777777776532 2345566666543 456666554221
Q ss_pred ---------------C-------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEec-ccccchhhHHHHHHhHhceE
Q 037221 213 ---------------F-------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICW-PFEGDQMTNCRYTYKERGIG 269 (342)
Q Consensus 213 ---------------~-------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~~G~G 269 (342)
+ ...+++..+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+ ++.|+|
T Consensus 243 ~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~ 319 (380)
T PRK13609 243 LKQSLEDLQETNPDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAA 319 (380)
T ss_pred HHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcE
Confidence 1 34678999998 99999988999999999999985 6777788899998 788999
Q ss_pred EEecccccCCHhHHHHHHHHHHcCCh
Q 037221 270 MEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 270 ~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+... +++++.++|.++++|++
T Consensus 320 ~~~~-----~~~~l~~~i~~ll~~~~ 340 (380)
T PRK13609 320 VVIR-----DDEEVFAKTEALLQDDM 340 (380)
T ss_pred EEEC-----CHHHHHHHHHHHHCCHH
Confidence 8754 88999999999999876
No 42
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.18 E-value=2.3e-09 Score=96.37 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=90.5
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhc-CCCC--EEEEECCCCC------------------------CHHHHhCCCC
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLAN-SNHP--FLWIIRPDLF------------------------PQEEVLNHPS 223 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~iw~~~~~~~------------------------pq~~lL~~~~ 223 (342)
.+-.|+||-|... .+.+.+...+.|-.. .+.+ .+.++++.-. ....++..++
T Consensus 218 E~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~ 296 (400)
T COG4671 218 EGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR 296 (400)
T ss_pred ccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh
Confidence 4456888887764 245666665555433 3333 3344443211 6777888888
Q ss_pred CcceeeccCCchhHHHhhcCCcEEeccccc---chhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCC
Q 037221 224 IGGFLTHSGWGSTIENLSAGVPMICWPFEG---DQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 224 ~~~~ItHgG~~s~~eal~~GvP~i~~P~~~---DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~ 294 (342)
. +|+-||+||++|-|.+|+|.+++|... ||...|.|+ +++|+.-.+.. ++ ++..+.+++...++.+
T Consensus 297 ~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~pe~l--t~~~La~al~~~l~~P 366 (400)
T COG4671 297 L--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL-EELGLVDVLLPENL--TPQNLADALKAALARP 366 (400)
T ss_pred e--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH-HhcCcceeeCcccC--ChHHHHHHHHhcccCC
Confidence 8 999999999999999999999999864 999999999 89999977765 88 9999999999998844
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.15 E-value=2.9e-08 Score=92.04 Aligned_cols=269 Identities=11% Similarity=0.085 Sum_probs=143.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Ccc--cCCC---CCc-chh---hhHHHHHHHHHHHhhCCCCCCccEEEECCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQ--ALDL---KHS-RIV---FYIDHNRAFILFVNQNGNQPAVSCIISDGF 70 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~--~~~~---p~~-~~~---~~~~~~~~li~~~~~~~~~~~pD~vI~D~~ 70 (342)
..|+++| +++||+|++++... ...- ... .... +.. ... .....+...+++ .+||+|+++..
T Consensus 21 ~~l~~~L-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~pdii~~~~~ 92 (364)
T cd03814 21 QRLVEHL-RARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLDA-------FAPDVVHIATP 92 (364)
T ss_pred HHHHHHH-HHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHHh-------cCCCEEEEecc
Confidence 4689999 99999999999876 3221 100 0000 100 111 223334444444 48999986543
Q ss_pred c---chHHHHHHHhCCceEEEecchhhHhhhhhhh---hhh--hccccccccceEEEEcCchhhhHHHHHHHhh-hCCce
Q 037221 71 M---PFTIEAAQQLGLSVVMFLTISACSFMGYKQF---RTL--KEKGLVASKASGIIFHTFDALEVQVLDAISA-MFPNL 141 (342)
Q Consensus 71 ~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~p~~ 141 (342)
. ..+..+++..++|++................ ... .........++.+++.+....+ .... ...++
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~-----~~~~~~~~~~ 167 (364)
T cd03814 93 GPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD-----ELRARGFRRV 167 (364)
T ss_pred chhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH-----HHhccCCCce
Confidence 2 3456778889999887654332211110000 000 0001114567777777743322 1122 12334
Q ss_pred eeccccccccccccccchhHHHHHHhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhcC-CCCEEEEECCC--------
Q 037221 142 FTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIV-VKKQQFIEVAMGLANS-NHPFLWIIRPD-------- 211 (342)
Q Consensus 142 ~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~iw~~~~~-------- 211 (342)
..+.+-..................+. .+++.+++..|+... ...+.+.+++..+... +..+++.-...
T Consensus 168 ~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~ 245 (364)
T cd03814 168 RLWPRGVDTELFHPRRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEAR 245 (364)
T ss_pred eecCCCccccccCcccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhcc
Confidence 44433222111111111111111122 233456677777653 2234444444444332 34444443211
Q ss_pred --CC------C---HHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccc
Q 037221 212 --LF------P---QEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDE 276 (342)
Q Consensus 212 --~~------p---q~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~ 276 (342)
++ + ...++..+++ +|..+. .++++||+++|+|+|+.+..+ +...+ ++.+.|...+. .
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~-~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP-G 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC-C
Confidence 11 3 4458889998 886654 478999999999999987654 44556 66688877763 3
Q ss_pred cCCHhHHHHHHHHHHcCCh
Q 037221 277 DGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 277 ~~~~~~l~~~i~~ll~~~~ 295 (342)
+.+++.+++.+++.|++
T Consensus 318 --~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 318 --DAEAFAAALAALLADPE 334 (364)
T ss_pred --CHHHHHHHHHHHHcCHH
Confidence 77889999999999886
No 44
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.06 E-value=8.7e-09 Score=97.46 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=52.3
Q ss_pred CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccc--------hhhH-----HHHHHhHhceEEEec-ccccCC
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGD--------QMTN-----CRYTYKERGIGMEIN-GDEDGI 279 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~D--------Q~~n-----a~~~~~~~G~G~~l~-~~~~~~ 279 (342)
....++..+++ +|+.+|.+++ |++++|+|+|+.|...- |..| +..+ .+.+++..+. ... +
T Consensus 254 ~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~--~ 327 (380)
T PRK00025 254 QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQEEA--T 327 (380)
T ss_pred cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcCCCC--C
Confidence 35668888898 9999998887 99999999999864321 2111 1222 2222222222 256 8
Q ss_pred HhHHHHHHHHHHcCCh
Q 037221 280 RNVIQKSVRELLEGEK 295 (342)
Q Consensus 280 ~~~l~~~i~~ll~~~~ 295 (342)
++.+.+++.++++|++
T Consensus 328 ~~~l~~~i~~ll~~~~ 343 (380)
T PRK00025 328 PEKLARALLPLLADGA 343 (380)
T ss_pred HHHHHHHHHHHhcCHH
Confidence 9999999999999987
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.96 E-value=5.1e-07 Score=87.90 Aligned_cols=269 Identities=9% Similarity=-0.039 Sum_probs=137.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cccc---CCC---CCc-chh---hhHHHHHHHHHHHhhCCCCCCccEEEECC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQA---LDL---KHS-RIV---FYIDHNRAFILFVNQNGNQPAVSCIISDG 69 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~---~~~---p~~-~~~---~~~~~~~~li~~~~~~~~~~~pD~vI~D~ 69 (342)
.+|++.| .++||+|++++... .... .... ... |.- .++ .....+..++++ .+||+|.+..
T Consensus 81 ~~l~~~L-~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-------~kpDiIh~~~ 152 (465)
T PLN02871 81 QNFIRYL-REMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVAR-------FKPDLIHASS 152 (465)
T ss_pred HHHHHHH-HHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHh-------CCCCEEEECC
Confidence 5789999 99999999999765 4222 1000 000 110 111 122234445544 4899997553
Q ss_pred Cc---chHHHHHHHhCCceEEEecchhhHhhhhhhhhh----hh-ccccccccceEEEEcCchhhhHHHHHHHhhhC---
Q 037221 70 FM---PFTIEAAQQLGLSVVMFLTISACSFMGYKQFRT----LK-EKGLVASKASGIIFHTFDALEVQVLDAISAMF--- 138 (342)
Q Consensus 70 ~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~--- 138 (342)
.. +.+..+|+.+|+|++.................. .+ ......+.++.+++.+... .+......
T Consensus 153 ~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~-----~~~l~~~~~~~ 227 (465)
T PLN02871 153 PGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPAL-----GKELEAAGVTA 227 (465)
T ss_pred CchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCHHH-----HHHHHHcCCCC
Confidence 22 234557888999998754432211100000000 00 0111245677777766321 12222211
Q ss_pred -CceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcC-CCCEEEEECCCC----
Q 037221 139 -PNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS-NHPFLWIIRPDL---- 212 (342)
Q Consensus 139 -p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~---- 212 (342)
.++..+..-..................+....+...+++..|+... .+....++++++.. +..++++-++..
T Consensus 228 ~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l 305 (465)
T PLN02871 228 ANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPYREEL 305 (465)
T ss_pred cCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChHHHHH
Confidence 1233222111111000000111122222111122345566677652 33455566666654 455554432211
Q ss_pred --------C------C---HHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhH---hce
Q 037221 213 --------F------P---QEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKE---RGI 268 (342)
Q Consensus 213 --------~------p---q~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~---~G~ 268 (342)
+ + ...++..+++ ||.-.. ..+++||+++|+|+|+....+ ....+ ++ -+.
T Consensus 306 ~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~ 378 (465)
T PLN02871 306 EKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKT 378 (465)
T ss_pred HHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCc
Confidence 1 2 4457888888 775433 346889999999999876532 22333 44 577
Q ss_pred EEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 269 GMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 269 G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
|..++. - +++++.++|.++++|++
T Consensus 379 G~lv~~-~--d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 379 GFLYTP-G--DVDDCVEKLETLLADPE 402 (465)
T ss_pred eEEeCC-C--CHHHHHHHHHHHHhCHH
Confidence 877763 3 78999999999998876
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=4.3e-08 Score=85.74 Aligned_cols=254 Identities=17% Similarity=0.197 Sum_probs=159.9
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C-cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchH---H
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFT---I 75 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~---~ 75 (342)
+.||+.| .++|..++|++.++ .+.+ + -..+. +. ..+.. +.|++ .++|++|.|.+...+ .
T Consensus 22 l~LA~~l-~k~~~~~~fl~k~~~e~~~~~~~~~f~-~~----~~~~~--n~ik~-------~k~d~lI~Dsygl~~dd~k 86 (318)
T COG3980 22 LTLAREL-EKRGFACLFLTKQDIEAIIHKVYEGFK-VL----EGRGN--NLIKE-------EKFDLLIFDSYGLNADDFK 86 (318)
T ss_pred HHHHHHH-HhcCceEEEecccchhhhhhhhhhhcc-ce----eeecc--ccccc-------ccCCEEEEeccCCCHHHHH
Confidence 6799999 99999999999988 6644 3 00000 00 00111 13333 589999999877754 4
Q ss_pred HHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCC--ceeecccccccccc
Q 037221 76 EAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFP--NLFTIGPLQLLLYQ 153 (342)
Q Consensus 76 ~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p--~~~~vGpl~~~~~~ 153 (342)
.+....|.+.+.+-.-........ ...-+... ++ +. . ....| ..++.||-+.+-..
T Consensus 87 ~ik~e~~~k~l~fDd~~~~~~~d~----d~ivN~~~--~a-----~~------~-----y~~v~~k~~~~lGp~y~~lr~ 144 (318)
T COG3980 87 LIKEEAGSKILIFDDENAKSFKDN----DLIVNAIL--NA-----ND------Y-----YGLVPNKTRYYLGPGYAPLRP 144 (318)
T ss_pred HHHHHhCCcEEEecCCCccchhhh----Hhhhhhhh--cc-----hh------h-----ccccCcceEEEecCCceeccH
Confidence 456678999998864333221100 00000000 00 00 0 01112 24667765543322
Q ss_pred ccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC--------------------
Q 037221 154 NLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-------------------- 213 (342)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-------------------- 213 (342)
..+...++ .+.. +..-|+|++|..- +......++..|.+.++.+-.+.++.+.
T Consensus 145 eF~~~r~~---~~~r--~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~ 217 (318)
T COG3980 145 EFYALREE---NTER--PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYID 217 (318)
T ss_pred HHHHhHHH---Hhhc--chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEec
Confidence 22111111 1211 2335999998774 4456677888888888666666653221
Q ss_pred --CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 214 --PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 214 --pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
.+..++..+++ .|+-+|. |+.|++..|+|.+++|+...|--.|+.. +.+|+-..+.-.+ +.+.+...+.+++
T Consensus 218 ~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~l--~~~~~~~~~~~i~ 291 (318)
T COG3980 218 TNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYHL--KDLAKDYEILQIQ 291 (318)
T ss_pred chhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCCC--chHHHHHHHHHhh
Confidence 57789999997 8887775 8899999999999999999999999999 8888888876446 7788888888888
Q ss_pred cCChHHHHHHHHHHHHH
Q 037221 292 EGEKGKQMRNKASEWKK 308 (342)
Q Consensus 292 ~~~~~~~~r~~a~~l~~ 308 (342)
.|.. .|++.-.-++
T Consensus 292 ~d~~---~rk~l~~~~~ 305 (318)
T COG3980 292 KDYA---RRKNLSFGSK 305 (318)
T ss_pred hCHH---Hhhhhhhccc
Confidence 8876 6665544333
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.85 E-value=2e-06 Score=81.30 Aligned_cols=278 Identities=12% Similarity=0.106 Sum_probs=138.5
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C---cccC-----CC-CCc-----chh-hhHHHHHHHHHHHhhCCCCCCccE
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A---SQAL-----DL-KHS-----RIV-FYIDHNRAFILFVNQNGNQPAVSC 64 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~---~~~~-----~~-p~~-----~~~-~~~~~~~~li~~~~~~~~~~~pD~ 64 (342)
..|++.| +++||+|++++... .... . ...+ .. +.. .+. ....-...+++.+... ..+||+
T Consensus 28 ~~l~~~L-~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Di 104 (398)
T cd03800 28 LELARAL-ARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRRE--GGRPDL 104 (398)
T ss_pred HHHHHHH-hccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhc--CCCccE
Confidence 6789999 99999999998654 3221 1 1110 00 111 010 1111223333333320 028999
Q ss_pred EEECCC--cchHHHHHHHhCCceEEEecchhhHhhhhh-hhh------hhhccccccccceEEEEcCchhhhHHHHHHHh
Q 037221 65 IISDGF--MPFTIEAAQQLGLSVVMFLTISACSFMGYK-QFR------TLKEKGLVASKASGIIFHTFDALEVQVLDAIS 135 (342)
Q Consensus 65 vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 135 (342)
|++... ...+..+++.+|+|++.............. ... ...........++.+++.+....+.- .....
T Consensus 105 v~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~-~~~~~ 183 (398)
T cd03800 105 IHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEEL-YSLYG 183 (398)
T ss_pred EEEecCccchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHHHH-HHHcc
Confidence 997642 335667788999998875443221100000 000 00000112456787777774322111 11101
Q ss_pred hhCCceeeccccccccccccccchhH-HHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhc--CCCCEEEEECCC
Q 037221 136 AMFPNLFTIGPLQLLLYQNLWKKETE-CLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLAN--SNHPFLWIIRPD 211 (342)
Q Consensus 136 ~~~p~~~~vGpl~~~~~~~~~~~~~~-~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~iw~~~~~ 211 (342)
....++..+.+-.............. ...+ .. +++..+++..|+.... ..+.+-..+..+.. .+..+++.-+..
T Consensus 184 ~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~ 261 (398)
T cd03800 184 AYPRRIRVVPPGVDLERFTPYGRAEARRARL-LR-DPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPR 261 (398)
T ss_pred ccccccEEECCCCCccceecccchhhHHHhh-cc-CCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 11112444433222111000001111 1111 11 2234566777876532 22333333333332 245555554321
Q ss_pred C----------------------C------CHH---HHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchh
Q 037221 212 L----------------------F------PQE---EVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQM 256 (342)
Q Consensus 212 ~----------------------~------pq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~ 256 (342)
. + |+. .++..+++ ++.. +-..+++||+++|+|+|+.+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~--- 336 (398)
T cd03800 262 DDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG--- 336 (398)
T ss_pred CcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC---
Confidence 1 0 443 35888888 7643 22468999999999999876543
Q ss_pred hHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 257 TNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 257 ~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
....+ ++.+.|..++. . +.+++.++|.++++|++
T Consensus 337 -~~e~i-~~~~~g~~~~~-~--~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 337 -PRDIV-VDGVTGLLVDP-R--DPEALAAALRRLLTDPA 370 (398)
T ss_pred -HHHHc-cCCCCeEEeCC-C--CHHHHHHHHHHHHhCHH
Confidence 44456 66678888763 3 78999999999998875
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.77 E-value=4.6e-06 Score=76.61 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=133.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCC---CCc----chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDL---KHS----RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMP 72 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~---p~~----~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~ 72 (342)
..+++.| .++||+|++++... .... ....+.. |.. ........+..+.+.+++ .+||+|++.....
T Consensus 17 ~~l~~~L-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dvv~~~~~~~ 91 (359)
T cd03808 17 LPLIKAL-RAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLRK----ERPDIVHTHTPKP 91 (359)
T ss_pred HHHHHHH-HhcCCeeEEEecCCCcccccccCCceEEeccccccccChHhHHHHHHHHHHHHHh----cCCCEEEEccccc
Confidence 4688999 99999999999877 5422 2111111 111 111112223333343432 5899998775433
Q ss_pred --hHHHHHHHhCCceEEEecchhhHhhhhhh-hhhhh--ccccccccceEEEEcCchhhhHHHHHHHhhhC-----Ccee
Q 037221 73 --FTIEAAQQLGLSVVMFLTISACSFMGYKQ-FRTLK--EKGLVASKASGIIFHTFDALEVQVLDAISAMF-----PNLF 142 (342)
Q Consensus 73 --~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-----p~~~ 142 (342)
.+..+++..+.|.+.+............. ..... ........++.+++.+-... +...... ..+.
T Consensus 92 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~~~~~ 166 (359)
T cd03808 92 GILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDR-----DLALKLGIIKKKKTVL 166 (359)
T ss_pred hhHHHHHHHHcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHH-----HHHHHhcCCCcCceEE
Confidence 34445554666655544322221111000 00000 00111345567776663222 1112211 1222
Q ss_pred eccccccccccccccchhHHHHHHhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhc--CCCCEEEEECCCCC------
Q 037221 143 TIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIV-VKKQQFIEVAMGLAN--SNHPFLWIIRPDLF------ 213 (342)
Q Consensus 143 ~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~iw~~~~~~~------ 213 (342)
..+.......... .... ..+++.+++..|+... ...+.+-+.+..+.+ .+..+++.-.....
T Consensus 167 ~~~~~~~~~~~~~--~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~ 237 (359)
T cd03808 167 IPGSGVDLDRFSP--SPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL 237 (359)
T ss_pred ecCCCCChhhcCc--cccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH
Confidence 2222211110000 0000 1234567777787653 223444444444442 23444433221110
Q ss_pred ------------------CHHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEE
Q 037221 214 ------------------PQEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGME 271 (342)
Q Consensus 214 ------------------pq~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~ 271 (342)
....++..+++ +|.... .+++.||+++|+|+|+.+..+ +...+ ++.+.|..
T Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i-~~~~~g~~ 310 (359)
T cd03808 238 EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAV-IDGVNGFL 310 (359)
T ss_pred HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhh-hcCcceEE
Confidence 45567888887 665433 578999999999999876543 34445 55567777
Q ss_pred ecccccCCHhHHHHHHHHHHcCCh
Q 037221 272 INGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 272 l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
.+. - +++++.+++.+++.|++
T Consensus 311 ~~~-~--~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 311 VPP-G--DAEALADAIERLIEDPE 331 (359)
T ss_pred ECC-C--CHHHHHHHHHHHHhCHH
Confidence 663 3 78999999999998876
No 49
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.77 E-value=1.6e-07 Score=88.40 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=55.9
Q ss_pred HHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 215 QEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
...++..+++ +|+-.|.. +.||+++|+|+|..+..++++. + .+.|.++.+. . +++++.+++.++++|+
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~-~~~g~~~lv~--~--d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----T-VEAGTNKLVG--T--DKENITKAAKRLLTDP 335 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----H-HhcCceEEeC--C--CHHHHHHHHHHHHhCh
Confidence 4457788887 89877644 7999999999999976665542 3 2357776654 3 8899999999999887
Q ss_pred hHHHHHHHHH
Q 037221 295 KGKQMRNKAS 304 (342)
Q Consensus 295 ~~~~~r~~a~ 304 (342)
. .+++..
T Consensus 336 ~---~~~~~~ 342 (365)
T TIGR00236 336 D---EYKKMS 342 (365)
T ss_pred H---HHHHhh
Confidence 6 555443
No 50
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.76 E-value=1.8e-06 Score=79.63 Aligned_cols=256 Identities=18% Similarity=0.175 Sum_probs=141.8
Q ss_pred hhcchhhccCCCeEEEEeCCC-C-CCC-CcccCCC----CC-cchh----hhHHHHHHHHHHHhhCCCCCCccEEEECCC
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-K-KNM-ASQALDL----KH-SRIV----FYIDHNRAFILFVNQNGNQPAVSCIISDGF 70 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~-~~~-~~~~~~~----p~-~~~~----~~~~~~~~li~~~~~~~~~~~pD~vI~D~~ 70 (342)
.+.++| .++||+|.+.+-.. . ..+ ...+++. -. .+.. .......++++.+++ .+||++|+- .
T Consensus 18 ~~I~eL-~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~----~~pDv~is~-~ 91 (335)
T PF04007_consen 18 NIIREL-EKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKK----FKPDVAISF-G 91 (335)
T ss_pred HHHHHH-HhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh----hCCCEEEec-C
Confidence 577899 99999998877544 2 222 2223222 11 1111 222223334444432 589999986 4
Q ss_pred cchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCC--cee-ecccc
Q 037221 71 MPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFP--NLF-TIGPL 147 (342)
Q Consensus 71 ~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p--~~~-~vGpl 147 (342)
.+.+..+|..+|+|++.+.-+..... .+.+....++.++.+.+..-+ ..+.... ++. |-| +
T Consensus 92 s~~a~~va~~lgiP~I~f~D~e~a~~----------~~~Lt~Pla~~i~~P~~~~~~-----~~~~~G~~~~i~~y~G-~ 155 (335)
T PF04007_consen 92 SPEAARVAFGLGIPSIVFNDTEHAIA----------QNRLTLPLADVIITPEAIPKE-----FLKRFGAKNQIRTYNG-Y 155 (335)
T ss_pred cHHHHHHHHHhCCCeEEEecCchhhc----------cceeehhcCCeeECCcccCHH-----HHHhcCCcCCEEEECC-e
Confidence 78889999999999999875432211 122223455555655432111 1112222 133 222 2
Q ss_pred ccccccccccchhHHHHHHhcCCCCceEEEEecccc----cCCHHHHHHHHHHHhcCCCCEEEEECCCC---------C-
Q 037221 148 QLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAI----VVKKQQFIEVAMGLANSNHPFLWIIRPDL---------F- 213 (342)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~iw~~~~~~---------~- 213 (342)
.....-.....+.+..+-+.- .+.+.|++-+-+.. ......+..+++.|+..+..++..-+... .
T Consensus 156 ~E~ayl~~F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~ 234 (335)
T PF04007_consen 156 KELAYLHPFKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVI 234 (335)
T ss_pred eeEEeecCCCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhccCcc
Confidence 111000112234445555553 35678888887743 22345577788888888776444332111 0
Q ss_pred ------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 214 ------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 214 ------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
...++|.++++ ||+-|| .+..||...|+|.|.+ +.++-...-+.+ .+.|.-... . +++++.+.+
T Consensus 235 i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L-~~~Gll~~~---~--~~~ei~~~v 304 (335)
T PF04007_consen 235 IPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYL-IEKGLLYHS---T--DPDEIVEYV 304 (335)
T ss_pred ccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHH-HHCCCeEec---C--CHHHHHHHH
Confidence 34489999998 998776 7888999999999974 222322333445 466763332 3 677777655
Q ss_pred HHHH
Q 037221 288 RELL 291 (342)
Q Consensus 288 ~~ll 291 (342)
.+.+
T Consensus 305 ~~~~ 308 (335)
T PF04007_consen 305 RKNL 308 (335)
T ss_pred HHhh
Confidence 5443
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.76 E-value=7.9e-06 Score=75.43 Aligned_cols=253 Identities=11% Similarity=0.078 Sum_probs=132.0
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cc-cc---CC-----CC-Cc------chh-----hhHHHHHHHHHHHhhCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-AS-QA---LD-----LK-HS------RIV-----FYIDHNRAFILFVNQNGN 58 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~-~~---~~-----~p-~~------~~~-----~~~~~~~~li~~~~~~~~ 58 (342)
..|++.| +++||+|+++++.. .... .. .. .. .. .. ... .....+..++++
T Consensus 22 ~~l~~~L-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 94 (359)
T cd03823 22 HDLAEAL-AKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAEFARLLED------ 94 (359)
T ss_pred HHHHHHH-HhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhccCHHHHHHHHHHHHH------
Confidence 4689999 99999999999766 3322 21 00 00 00 00 000 233444455554
Q ss_pred CCCccEEEECCCcch---HHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHh
Q 037221 59 QPAVSCIISDGFMPF---TIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAIS 135 (342)
Q Consensus 59 ~~~pD~vI~D~~~~~---~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 135 (342)
.+||+|++...... ....+...++|++.......... . .........+.++..+.. ..+...
T Consensus 95 -~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~----~-----~~~~~~~~~d~ii~~s~~-----~~~~~~ 159 (359)
T cd03823 95 -FRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLIC----P-----RQGLFKKGGDAVIAPSRF-----LLDRYV 159 (359)
T ss_pred -cCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeec----c-----hhhhhccCCCEEEEeCHH-----HHHHHH
Confidence 48999987764332 33456788999988654322110 0 000112222666665531 112222
Q ss_pred hh-C--CceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhcCCCCEEEEECCC
Q 037221 136 AM-F--PNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLANSNHPFLWIIRPD 211 (342)
Q Consensus 136 ~~-~--p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~iw~~~~~ 211 (342)
.. . .++..+........... .. . ..+.++.+++..|+.... ..+.+.+.+..+...+..+++.-...
T Consensus 160 ~~~~~~~~~~vi~n~~~~~~~~~--~~----~---~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~ 230 (359)
T cd03823 160 ANGLFAEKISVIRNGIDLDRAKR--PR----R---APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGL 230 (359)
T ss_pred HcCCCccceEEecCCcChhhccc--cc----c---CCCCCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCch
Confidence 21 1 13333332221111000 00 0 123345667777876532 23333333333333345554433211
Q ss_pred -------------CC---------CHHHHhCCCCCcceeec----cC-CchhHHHhhcCCcEEecccccchhhHHHHHHh
Q 037221 212 -------------LF---------PQEEVLNHPSIGGFLTH----SG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYK 264 (342)
Q Consensus 212 -------------~~---------pq~~lL~~~~~~~~ItH----gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~ 264 (342)
++ ....++..+++ +|.. .| ..++.||+++|+|+|+.+.. .+...+ +
T Consensus 231 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~ 303 (359)
T cd03823 231 ELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-R 303 (359)
T ss_pred hhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-c
Confidence 10 23456888888 6632 33 34789999999999987653 345556 5
Q ss_pred HhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 265 ERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 265 ~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+.+.|...+. - +.+++.+++.++++|+.
T Consensus 304 ~~~~g~~~~~-~--d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 304 DGVNGLLFPP-G--DAEDLAAALERLIDDPD 331 (359)
T ss_pred CCCcEEEECC-C--CHHHHHHHHHHHHhChH
Confidence 5557777763 3 68999999999999776
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.73 E-value=1.1e-05 Score=74.12 Aligned_cols=268 Identities=11% Similarity=0.078 Sum_probs=136.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cc-ccCCC---C-Cc---chh---hhHHHHHHHHHHHhhCCCCCCccEEEEC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-AS-QALDL---K-HS---RIV---FYIDHNRAFILFVNQNGNQPAVSCIISD 68 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~-~~~~~---p-~~---~~~---~~~~~~~~li~~~~~~~~~~~pD~vI~D 68 (342)
..|++.| .+.||+|++++... .... .. ..... . .. ... .....+..+++. .+||+|+..
T Consensus 21 ~~l~~~L-~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Dii~~~ 92 (374)
T cd03801 21 LELARAL-AARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRR-------ERFDVVHAH 92 (374)
T ss_pred HHHHHHH-HhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHhhh-------cCCcEEEEe
Confidence 4688999 99999999999876 4333 21 10000 0 00 000 222223333333 489999977
Q ss_pred CCcchHH--HHHHHhCCceEEEecchhhHhhhhh----hhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhC----
Q 037221 69 GFMPFTI--EAAQQLGLSVVMFLTISACSFMGYK----QFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMF---- 138 (342)
Q Consensus 69 ~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---- 138 (342)
....... ..+...++|++.............. ...............+.+++.+.. ..+......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~-----~~~~~~~~~~~~~ 167 (374)
T cd03801 93 DWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEA-----TREELRELGGVPP 167 (374)
T ss_pred chhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHH-----HHHHHHhcCCCCC
Confidence 6555443 4788889999887665543221110 000000011114556666665532 222222221
Q ss_pred CceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhcC--CCCEEEEECCC----
Q 037221 139 PNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLANS--NHPFLWIIRPD---- 211 (342)
Q Consensus 139 p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~iw~~~~~---- 211 (342)
.++..+........... ......... ....+..+++.+|+.... ..+.+-..+..+... +.++++.-.+.
T Consensus 168 ~~~~~i~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~ 244 (374)
T cd03801 168 EKITVIPNGVDTERFRP--APRAARRRL-GIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREE 244 (374)
T ss_pred CcEEEecCcccccccCc--cchHHHhhc-CCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHH
Confidence 13444433221111000 000001111 112334566666766421 122222222222222 22333221110
Q ss_pred ------------CC---------CHHHHhCCCCCcceee----ccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHh
Q 037221 212 ------------LF---------PQEEVLNHPSIGGFLT----HSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKER 266 (342)
Q Consensus 212 ------------~~---------pq~~lL~~~~~~~~It----HgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~ 266 (342)
.+ ....++..+++ +|. -|..++++||+++|+|+|+.+. ......+ ++.
T Consensus 245 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~ 317 (374)
T cd03801 245 LEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDG 317 (374)
T ss_pred HHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCC
Confidence 00 45568888888 663 3556789999999999998776 3345555 556
Q ss_pred ceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 267 GIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 267 G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+.|...+. . +++++.+++.++++|++
T Consensus 318 ~~g~~~~~-~--~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 318 ETGLLVPP-G--DPEALAEAILRLLDDPE 343 (374)
T ss_pred cceEEeCC-C--CHHHHHHHHHHHHcChH
Confidence 77777763 3 68999999999999876
No 53
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.73 E-value=5.7e-06 Score=75.63 Aligned_cols=266 Identities=15% Similarity=0.113 Sum_probs=135.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC-C-CCCC-cccCCC---CCc---c---hhhhHHHHHHHHHHHhhCCCCCCccEEEECC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-K-KNMA-SQALDL---KHS---R---IVFYIDHNRAFILFVNQNGNQPAVSCIISDG 69 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~-~~~~-~~~~~~---p~~---~---~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~ 69 (342)
+.+++.| +++||+|++++... . .... ...... +.. . .......+..++++ .+||+|+...
T Consensus 20 ~~l~~~L-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~d~i~~~~ 91 (348)
T cd03820 20 SNLANAL-AEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKN-------NKPDVVISFL 91 (348)
T ss_pred HHHHHHH-HhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhcc-------cCCCEEEEcC
Confidence 4688999 99999999999877 5 2221 111111 110 0 01233334444444 4899999886
Q ss_pred CcchHHHHHHHhCC-ceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCCceeeccccc
Q 037221 70 FMPFTIEAAQQLGL-SVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQ 148 (342)
Q Consensus 70 ~~~~~~~~A~~lgi-P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~ 148 (342)
........+...+. |.+............. ..... ........++.+++.+.... .........++..+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~d~ii~~s~~~~----~~~~~~~~~~~~vi~~~~ 165 (348)
T cd03820 92 TSLLTFLASLGLKIVKLIVSEHNSPDAYKKR-LRRLL-LRRLLYRRADAVVVLTEEDR----ALYYKKFNKNVVVIPNPL 165 (348)
T ss_pred chHHHHHHHHhhccccEEEecCCCccchhhh-hHHHH-HHHHHHhcCCEEEEeCHHHH----HHhhccCCCCeEEecCCc
Confidence 44344455555565 7776544332211110 00000 01112456666666653221 011111112344444333
Q ss_pred cccccccccchhHHHHHHhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhc--CCCCEEEEECCCC-------------
Q 037221 149 LLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIV-VKKQQFIEVAMGLAN--SNHPFLWIIRPDL------------- 212 (342)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~iw~~~~~~------------- 212 (342)
...... .....+..+++.+|+... ...+.+.+.+..+.. .+..+++.-....
T Consensus 166 ~~~~~~------------~~~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~ 233 (348)
T cd03820 166 PFPPEE------------PSSDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGL 233 (348)
T ss_pred Chhhcc------------ccCCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCC
Confidence 211100 001223345566666543 123333333343432 2333333322111
Q ss_pred ----------CCHHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccC
Q 037221 213 ----------FPQEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDG 278 (342)
Q Consensus 213 ----------~pq~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 278 (342)
.....++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+. .+.+....|...+. .
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~-~-- 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN-G-- 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC-C--
Confidence 045678888887 665542 568999999999999876544332 23123237777663 3
Q ss_pred CHhHHHHHHHHHHcCChHHHHHHHHHH
Q 037221 279 IRNVIQKSVRELLEGEKGKQMRNKASE 305 (342)
Q Consensus 279 ~~~~l~~~i~~ll~~~~~~~~r~~a~~ 305 (342)
+.+++.++|.++++|++ .+++..+
T Consensus 305 ~~~~~~~~i~~ll~~~~---~~~~~~~ 328 (348)
T cd03820 305 DVEALAEALLRLMEDEE---LRKRMGA 328 (348)
T ss_pred CHHHHHHHHHHHHcCHH---HHHHHHH
Confidence 77999999999999887 4444433
No 54
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.73 E-value=9.1e-06 Score=78.18 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=57.8
Q ss_pred HHHHhCCCCCcceee----ccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLT----HSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 215 q~~lL~~~~~~~~It----HgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
...++..+++ +|+. -+|..+++|++++|+|+|+-|..+++......+ .+.|+++... +++++.+++.++
T Consensus 313 l~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~-----d~~~La~~l~~l 385 (425)
T PRK05749 313 LGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE-----DAEDLAKAVTYL 385 (425)
T ss_pred HHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC-----CHHHHHHHHHHH
Confidence 3557788887 2331 134456999999999999999988888877777 5678777754 889999999999
Q ss_pred HcCCh
Q 037221 291 LEGEK 295 (342)
Q Consensus 291 l~~~~ 295 (342)
++|++
T Consensus 386 l~~~~ 390 (425)
T PRK05749 386 LTDPD 390 (425)
T ss_pred hcCHH
Confidence 99876
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.71 E-value=5.5e-06 Score=77.61 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=56.0
Q ss_pred CHHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ +|.- |...++.||+++|+|+|+.... ..+..+ ++-..|...+. - +.+++.+++.+
T Consensus 263 ~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i-~~~~~G~~~~~-~--~~~~l~~~i~~ 332 (371)
T cd04962 263 HVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVV-KHGETGFLVDV-G--DVEAMAEYALS 332 (371)
T ss_pred cHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----Cchhhh-cCCCceEEcCC-C--CHHHHHHHHHH
Confidence 45677888887 6632 3456999999999999986543 344555 55456766553 3 78999999999
Q ss_pred HHcCChH-HHHHHHHHH
Q 037221 290 LLEGEKG-KQMRNKASE 305 (342)
Q Consensus 290 ll~~~~~-~~~r~~a~~ 305 (342)
+++|+.. +++++++++
T Consensus 333 l~~~~~~~~~~~~~~~~ 349 (371)
T cd04962 333 LLEDDELWQEFSRAARN 349 (371)
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 9987751 234444444
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.71 E-value=2.4e-05 Score=72.14 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=138.6
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cccc--------CCCCC------cch---hhhHHHHHHHHHHHhhCCCCCCc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQA--------LDLKH------SRI---VFYIDHNRAFILFVNQNGNQPAV 62 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~--------~~~p~------~~~---~~~~~~~~~li~~~~~~~~~~~p 62 (342)
..+++.| .+.||+|++++... .... .... ..... ... ......+..+++.. . .+|
T Consensus 21 ~~~~~~l-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~ 94 (377)
T cd03798 21 KELARAL-AKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLK-R----FRP 94 (377)
T ss_pred HHHHHHH-HHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcc-c----CCC
Confidence 4578889 89999999999876 4433 2110 00000 000 03333344444411 1 589
Q ss_pred cEEEECCCcc---hHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhh--
Q 037221 63 SCIISDGFMP---FTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAM-- 137 (342)
Q Consensus 63 D~vI~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-- 137 (342)
|+|++....+ .+..+++..++|++.................... .......++.+++.+.. ..+.....
T Consensus 95 dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~-~~~~~~~~d~ii~~s~~-----~~~~~~~~~~ 168 (377)
T cd03798 95 DLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRAL-LRRALRRADAVIAVSEA-----LADELKALGI 168 (377)
T ss_pred CEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHH-HHHHHhcCCeEEeCCHH-----HHHHHHHhcC
Confidence 9998775333 3445666778898876654433221111100000 01114566777776632 22222221
Q ss_pred -CCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhcC--CCCEEEEECCCC-
Q 037221 138 -FPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIV-VKKQQFIEVAMGLANS--NHPFLWIIRPDL- 212 (342)
Q Consensus 138 -~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~iw~~~~~~- 212 (342)
..++..++............ .... ..+. ...++.+++..|+... ...+.+-..+..+... +..+++.-....
T Consensus 169 ~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~ 245 (377)
T cd03798 169 DPEKVTVIPNGVDTERFSPAD-RAEA-RKLG-LPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR 245 (377)
T ss_pred CCCceEEcCCCcCcccCCCcc-hHHH-Hhcc-CCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch
Confidence 12455555433221111000 0000 1111 1234456777777653 2233333333444332 233333221110
Q ss_pred ---------------C------C---HHHHhCCCCCccee----eccCCchhHHHhhcCCcEEecccccchhhHHHHHHh
Q 037221 213 ---------------F------P---QEEVLNHPSIGGFL----THSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYK 264 (342)
Q Consensus 213 ---------------~------p---q~~lL~~~~~~~~I----tHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~ 264 (342)
+ + ...++..+++ +| +-|..++++||+++|+|+|+.+..+ ....+ +
T Consensus 246 ~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~-~ 318 (377)
T cd03798 246 EALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEII-T 318 (377)
T ss_pred HHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHh-c
Confidence 0 3 3467888887 55 2355678999999999999876543 34455 6
Q ss_pred HhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 265 ERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 265 ~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+.+.|...+. - +.+++.+++.+++++..
T Consensus 319 ~~~~g~~~~~-~--~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 319 DGENGLLVPP-G--DPEALAEAILRLLADPW 346 (377)
T ss_pred CCcceeEECC-C--CHHHHHHHHHHHhcCcH
Confidence 6666777663 3 88999999999999876
No 57
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.69 E-value=2e-07 Score=87.49 Aligned_cols=268 Identities=18% Similarity=0.108 Sum_probs=137.5
Q ss_pred hhhcchhhccC-CCeEEEEeCCC-C-CCCC-----cccCCCCC------c---ch-hhhHHHHHHHHHHHhhCCCCCCcc
Q 037221 2 LQLAKLPHHHK-GFHITFVNFEN-K-KNMA-----SQALDLKH------S---RI-VFYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 2 l~la~~L~~~~-Gh~Vt~~~~~~-~-~~~~-----~~~~~~p~------~---~~-~~~~~~~~~li~~~~~~~~~~~pD 63 (342)
-.|.++| +++ |+++.++.+.. . +... ......++ + +. .........+.+.+.+ .+||
T Consensus 16 ~pl~~~l-~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD 90 (363)
T cd03786 16 APLIRAL-KKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLE----EKPD 90 (363)
T ss_pred HHHHHHH-hcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHH----hCCC
Confidence 3577888 776 99999766543 2 2221 10010110 0 11 1222233334444433 4899
Q ss_pred EEEECCC---cchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhh-hCC
Q 037221 64 CIISDGF---MPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISA-MFP 139 (342)
Q Consensus 64 ~vI~D~~---~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~p 139 (342)
+|++... ..++..+|..+|||++.+....... ......... .....+.++.+++.+- ...+.+.. ..+
T Consensus 91 vV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~--~~~~~~~~~-r~~~~~~ad~~~~~s~-----~~~~~l~~~G~~ 162 (363)
T cd03786 91 LVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSF--DRGMPDEEN-RHAIDKLSDLHFAPTE-----EARRNLLQEGEP 162 (363)
T ss_pred EEEEeCCchHHHHHHHHHHHcCCCEEEEecccccC--CCCCCchHH-HHHHHHHhhhccCCCH-----HHHHHHHHcCCC
Confidence 9986532 2356778889999988754321100 000000000 0011233455555442 11122222 222
Q ss_pred --ceeecccccccccc-ccccch-hHHHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhcCC---CCEEEEECCC
Q 037221 140 --NLFTIGPLQLLLYQ-NLWKKE-TECLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLANSN---HPFLWIIRPD 211 (342)
Q Consensus 140 --~~~~vGpl~~~~~~-~~~~~~-~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~---~~~iw~~~~~ 211 (342)
+++.+|....+... ...... ......+. .++++.+++++|..... ..+.+..++++++... ..+++...+.
T Consensus 163 ~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~ 241 (363)
T cd03786 163 PERIFVVGNTMIDALLRLLELAKKELILELLG-LLPKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR 241 (363)
T ss_pred cccEEEECchHHHHHHHHHHhhccchhhhhcc-cCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 47777743221110 000000 00111111 13456777777776532 3556667777776542 2333322111
Q ss_pred -----------------CC---------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhH
Q 037221 212 -----------------LF---------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKE 265 (342)
Q Consensus 212 -----------------~~---------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~ 265 (342)
++ ....++..+++ ||+..| |.+.|++++|+|+|+++...+ +..+ .+
T Consensus 242 ~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~-~~ 313 (363)
T cd03786 242 TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPET-VE 313 (363)
T ss_pred hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchh-hh
Confidence 11 23356778888 999999 778899999999999874322 3344 45
Q ss_pred hceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 266 RGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 266 ~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
.|+++.+. - +.+++.+++.++++++.
T Consensus 314 ~g~~~~~~--~--~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 314 SGTNVLVG--T--DPEAILAAIEKLLSDEF 339 (363)
T ss_pred eeeEEecC--C--CHHHHHHHHHHHhcCch
Confidence 67776654 2 68999999999999875
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.65 E-value=1.3e-05 Score=74.14 Aligned_cols=268 Identities=11% Similarity=0.070 Sum_probs=134.9
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cc-ccCCC-C--Cc---chh---hhHHHHHHHHHHHhhCCCCCCccEEEECC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-AS-QALDL-K--HS---RIV---FYIDHNRAFILFVNQNGNQPAVSCIISDG 69 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~-~~~~~-p--~~---~~~---~~~~~~~~li~~~~~~~~~~~pD~vI~D~ 69 (342)
..+++.| +++||+|+++++.. .... .. ..... + .. ... .....+..++++ .+||+|+...
T Consensus 21 ~~l~~~L-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Div~~~~ 92 (374)
T cd03817 21 RRLAEEL-EKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIILKE-------LGPDIVHTHT 92 (374)
T ss_pred HHHHHHH-HHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHHhh-------cCCCEEEECC
Confidence 4688999 99999999999866 4333 21 11000 0 00 110 122222233333 5899998764
Q ss_pred Ccc---hHHHHHHHhCCceEEEecchhhHhhhhhhhhh-----h---hccccccccceEEEEcCchhhhHHHHHHHhhh-
Q 037221 70 FMP---FTIEAAQQLGLSVVMFLTISACSFMGYKQFRT-----L---KEKGLVASKASGIIFHTFDALEVQVLDAISAM- 137 (342)
Q Consensus 70 ~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~- 137 (342)
... .+..+++..++|++.................. . .........++.+++.+.. ..+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~-----~~~~~~~~~ 167 (374)
T cd03817 93 PFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEK-----IADLLREYG 167 (374)
T ss_pred chhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHH-----HHHHHHhcC
Confidence 322 34556778899988765544322111100000 0 0011114567777776632 11222221
Q ss_pred CC-ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhc--CCCCEEEEECCCC-
Q 037221 138 FP-NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLAN--SNHPFLWIIRPDL- 212 (342)
Q Consensus 138 ~p-~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~iw~~~~~~- 212 (342)
.+ ++..+.+.................. +. ..+++.+++..|+.... ..+.+-.++..+.. .+..+++.-++..
T Consensus 168 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~ 245 (374)
T cd03817 168 VKRPIEVIPTGIDLDRFEPVDGDDERRK-LG-IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPER 245 (374)
T ss_pred CCCceEEcCCccchhccCccchhHHHHh-cC-CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchH
Confidence 11 2333332221111010000101011 11 12344566777776532 23444444444433 3345554432211
Q ss_pred ---------------C------CH---HHHhCCCCCcceeecc----CCchhHHHhhcCCcEEecccccchhhHHHHHHh
Q 037221 213 ---------------F------PQ---EEVLNHPSIGGFLTHS----GWGSTIENLSAGVPMICWPFEGDQMTNCRYTYK 264 (342)
Q Consensus 213 ---------------~------pq---~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~ 264 (342)
+ |+ ..++..+++ +|... ...++.||+++|+|+|+.+.. ..+..+ +
T Consensus 246 ~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i-~ 318 (374)
T cd03817 246 EELEELARELGLADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLV-A 318 (374)
T ss_pred HHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----Chhhhe-e
Confidence 1 33 457888888 66433 346899999999999987643 344555 5
Q ss_pred HhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 265 ERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 265 ~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+.+.|..++.. +. ++.+++.++++++.
T Consensus 319 ~~~~g~~~~~~---~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 319 DGENGFLFPPG---DE-ALAEALLRLLQDPE 345 (374)
T ss_pred cCceeEEeCCC---CH-HHHHHHHHHHhChH
Confidence 66778777642 23 89999999998876
No 59
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.61 E-value=2e-05 Score=73.30 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=50.7
Q ss_pred HHHHhCCCCCcceeeccC---------CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHH
Q 037221 215 QEEVLNHPSIGGFLTHSG---------WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQK 285 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHgG---------~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~ 285 (342)
...++..+++ +|.... -+++.||+++|+|+|+.+..+.+.. + .+.+.|..++. - +.+++.+
T Consensus 288 ~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~-~~~~~g~~~~~-~--~~~~l~~ 357 (394)
T cd03794 288 LPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----V-EEAGAGLVVPP-G--DPEALAA 357 (394)
T ss_pred HHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----h-ccCCcceEeCC-C--CHHHHHH
Confidence 3457888888 664332 2347999999999999987654432 3 33366766653 3 7899999
Q ss_pred HHHHHHcCCh
Q 037221 286 SVRELLEGEK 295 (342)
Q Consensus 286 ~i~~ll~~~~ 295 (342)
++.+++.|++
T Consensus 358 ~i~~~~~~~~ 367 (394)
T cd03794 358 AILELLDDPE 367 (394)
T ss_pred HHHHHHhChH
Confidence 9999998876
No 60
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.61 E-value=3.2e-07 Score=85.60 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEE--ECCCcc-hHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceE
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCII--SDGFMP-FTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASG 117 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI--~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (342)
.+...+.+++++. +||+|| .|-+.. ++..+|..++||++-+..+.-..........+..+ .....-+++
T Consensus 54 ~~~~~~~~~~~~~-------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R-~~i~~la~l 125 (346)
T PF02350_consen 54 LAIIELADVLERE-------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINR-HAIDKLAHL 125 (346)
T ss_dssp HHHHHHHHHHHHH-------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHH-HHHHHH-SE
T ss_pred HHHHHHHHHHHhc-------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhh-hhhhhhhhh
Confidence 4555566666665 899987 555444 67889999999988776541111000001111111 111445667
Q ss_pred EEEcCchhhhHHHHHHHhhh-C--Cceeeccccccccccccc-cchhHH--HHHHhcCCCCceEEEEecccccCC-H---
Q 037221 118 IIFHTFDALEVQVLDAISAM-F--PNLFTIGPLQLLLYQNLW-KKETEC--LRWLDSKLPNSVIYVNFGIAIVVK-K--- 187 (342)
Q Consensus 118 ~l~~~~~~l~~~~~~~~~~~-~--p~~~~vGpl~~~~~~~~~-~~~~~~--~~~l~~~~~~~~V~vs~Gs~~~~~-~--- 187 (342)
.+.++- .+.+.+... . .+++.+|....+.-.... ...... ..++.. .+++.++|++=...+.. +
T Consensus 126 hf~~t~-----~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~ 199 (346)
T PF02350_consen 126 HFAPTE-----EARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERL 199 (346)
T ss_dssp EEESSH-----HHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--H
T ss_pred hccCCH-----HHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHH
Confidence 777663 222322222 2 368999977654321100 011111 122222 56789999985544444 3
Q ss_pred HHHHHHHHHHhcC-CCCEEEEECCCCC------------------------CHHHHhCCCCCcceeeccCCchhH-HHhh
Q 037221 188 QQFIEVAMGLANS-NHPFLWIIRPDLF------------------------PQEEVLNHPSIGGFLTHSGWGSTI-ENLS 241 (342)
Q Consensus 188 ~~~~~~~~al~~~-~~~~iw~~~~~~~------------------------pq~~lL~~~~~~~~ItHgG~~s~~-eal~ 241 (342)
+.+..++++|... +.+++|.+.++.. ....+|.++++ +||..| ++. ||.+
T Consensus 200 ~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~ 275 (346)
T PF02350_consen 200 EQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPS 275 (346)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHH
Confidence 4555566666665 7789998863221 45668888998 999999 566 9999
Q ss_pred cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 242 AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 242 ~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
.|+|.|.+=..++.+.- ...|..+.+. . ++++|.+++++++.+..
T Consensus 276 lg~P~v~iR~~geRqe~-----r~~~~nvlv~--~--~~~~I~~ai~~~l~~~~ 320 (346)
T PF02350_consen 276 LGKPVVNIRDSGERQEG-----RERGSNVLVG--T--DPEAIIQAIEKALSDKD 320 (346)
T ss_dssp GT--EEECSSS-S-HHH-----HHTTSEEEET--S--SHHHHHHHHHHHHH-HH
T ss_pred hCCeEEEecCCCCCHHH-----HhhcceEEeC--C--CHHHHHHHHHHHHhChH
Confidence 99999999333332222 2346665544 5 89999999999998744
No 61
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.60 E-value=1.5e-06 Score=80.76 Aligned_cols=214 Identities=11% Similarity=0.022 Sum_probs=115.9
Q ss_pred CCccEEE-ECCCc--chHHHHHHHh--CCceEEEec-chhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHH
Q 037221 60 PAVSCII-SDGFM--PFTIEAAQQL--GLSVVMFLT-ISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDA 133 (342)
Q Consensus 60 ~~pD~vI-~D~~~--~~~~~~A~~l--giP~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 133 (342)
++||++| .|.-. ..-...+++. |||++.+.+ +.+.+...... ...+..+.+++ ...+|.+++
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvWAWr~~R~~--------~i~k~~d~vl~--ifPFE~~~y-- 142 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVWAWKKGRAK--------ILEKYCDFLAS--ILPFEVQFY-- 142 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeCcchHH--------HHHHHHhhhhc--cCCCCHHHh--
Confidence 5899998 56533 3445566677 799888754 32222111000 00112222221 113444432
Q ss_pred HhhhCCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCC---CCEEEEECC
Q 037221 134 ISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSN---HPFLWIIRP 210 (342)
Q Consensus 134 ~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~---~~~iw~~~~ 210 (342)
..+..+||-...+..... . .. + +++++|.+--||...--...+..++++.+... ..|++. ..
T Consensus 143 ----g~~~~~VGhPl~d~~~~~---~---~~-~---~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~-~a 207 (347)
T PRK14089 143 ----QSKATYVGHPLLDEIKEF---K---KD-L---DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVP-SF 207 (347)
T ss_pred ----CCCCEEECCcHHHhhhhh---h---hh-c---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEe-CC
Confidence 234778886544322100 0 01 2 23368889889886322233443334333221 222222 11
Q ss_pred CCC-----------------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEe-cccccchhhHHHHHHh---HhceE
Q 037221 211 DLF-----------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMIC-WPFEGDQMTNCRYTYK---ERGIG 269 (342)
Q Consensus 211 ~~~-----------------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~-~P~~~DQ~~na~~~~~---~~G~G 269 (342)
... ...+++..+++ .|+-.|..|+ |+..+|+|+|+ .....-|..||+++ . ..|+.
T Consensus 208 ~~~~~i~~~~~~~~~~~~~~~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~l-v~~~~igL~ 283 (347)
T PRK14089 208 FKGKDLKEIYGDISEFEISYDTHKALLEAEF--AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMF-VKLKHIGLA 283 (347)
T ss_pred CcHHHHHHHHhcCCCcEEeccHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHH-HcCCeeehH
Confidence 110 34567888888 9999999999 99999999987 22345788999999 5 44544
Q ss_pred EEe-c-------------ccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 037221 270 MEI-N-------------GDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLV 310 (342)
Q Consensus 270 ~~l-~-------------~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~ 310 (342)
-.+ + .+. |++.+.+++.+. ... ++++...++.+.+
T Consensus 284 Nii~~~~~~~~vvPEllQ~~~--t~~~la~~i~~~-~~~---~~~~~~~~l~~~l 332 (347)
T PRK14089 284 NIFFDFLGKEPLHPELLQEFV--TVENLLKAYKEM-DRE---KFFKKSKELREYL 332 (347)
T ss_pred HHhcCCCcccccCchhhcccC--CHHHHHHHHHHH-HHH---HHHHHHHHHHHHh
Confidence 323 1 146 899999988772 111 2555555555544
No 62
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.59 E-value=4.2e-05 Score=71.02 Aligned_cols=265 Identities=11% Similarity=0.016 Sum_probs=131.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCC---CCc--chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCc--c
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDL---KHS--RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFM--P 72 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~---p~~--~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~--~ 72 (342)
..||+.| +++||+|++++... .... ...+... +.. ........+..+.+.+++ .+||+|++.... +
T Consensus 17 ~~l~~~L-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~dii~~~~~~~~~ 91 (355)
T cd03819 17 LELARAL-VERGHRSLVASAGGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIRE----EKVDIVHARSRAPAW 91 (355)
T ss_pred HHHHHHH-HHcCCEEEEEcCCCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHH----cCCCEEEECCCchhH
Confidence 5789999 99999999998755 3222 2111110 111 111222233344444443 589999976532 2
Q ss_pred hHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhh--CC--ceeeccccc
Q 037221 73 FTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAM--FP--NLFTIGPLQ 148 (342)
Q Consensus 73 ~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~p--~~~~vGpl~ 148 (342)
.+..+++.+++|++............ . . .....++.++..+-.. .+..+.. .+ ++..++.-.
T Consensus 92 ~~~~~~~~~~~~~i~~~h~~~~~~~~-------~-~-~~~~~~~~vi~~s~~~-----~~~~~~~~~~~~~k~~~i~ngi 157 (355)
T cd03819 92 SAYLAARRTRPPFVTTVHGFYSVNFR-------Y-N-AIMARGDRVIAVSNFI-----ADHIRENYGVDPDRIRVIPRGV 157 (355)
T ss_pred HHHHHHHhcCCCEEEEeCCchhhHHH-------H-H-HHHHhcCEEEEeCHHH-----HHHHHHhcCCChhhEEEecCCc
Confidence 44556778899998766544322110 0 0 0133455555544211 1111211 11 233333221
Q ss_pred cccccc-cccchhHHHHHHhc--CCCCceEEEEeccccc-CCHHHHHHHHHHHhcC--CCCEEEEECCCC----------
Q 037221 149 LLLYQN-LWKKETECLRWLDS--KLPNSVIYVNFGIAIV-VKKQQFIEVAMGLANS--NHPFLWIIRPDL---------- 212 (342)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~l~~--~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~iw~~~~~~---------- 212 (342)
...... ..........+... .+++..+++..|.... ...+.+-+.+..+... +..++++-....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~ 237 (355)
T cd03819 158 DLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLE 237 (355)
T ss_pred cccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHH
Confidence 111100 00001111111110 1233455666666542 2234444444444442 333333321100
Q ss_pred ----------C-------CHHHHhCCCCCcceeecc----C-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEE
Q 037221 213 ----------F-------PQEEVLNHPSIGGFLTHS----G-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGM 270 (342)
Q Consensus 213 ----------~-------pq~~lL~~~~~~~~ItHg----G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~ 270 (342)
+ ....+|..+++ +|.-. | .++++||+++|+|+|+....+ +...+ .+-+.|.
T Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i-~~~~~g~ 310 (355)
T cd03819 238 LIKRLGLQDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETV-RPGETGL 310 (355)
T ss_pred HHHHcCCcceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHH-hCCCceE
Confidence 0 56678888898 55322 3 358999999999999875432 34445 5555777
Q ss_pred EecccccCCHhHHHHHHHHHHc-CCh
Q 037221 271 EINGDEDGIRNVIQKSVRELLE-GEK 295 (342)
Q Consensus 271 ~l~~~~~~~~~~l~~~i~~ll~-~~~ 295 (342)
.++. - +.+.+.++|..++. +++
T Consensus 311 ~~~~-~--~~~~l~~~i~~~~~~~~~ 333 (355)
T cd03819 311 LVPP-G--DAEALAQALDQILSLLPE 333 (355)
T ss_pred EeCC-C--CHHHHHHHHHHHHhhCHH
Confidence 7763 3 88999999976654 443
No 63
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.52 E-value=4.3e-05 Score=70.81 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=51.3
Q ss_pred HHHHhCCCCCcceee----------ccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHH
Q 037221 215 QEEVLNHPSIGGFLT----------HSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQ 284 (342)
Q Consensus 215 q~~lL~~~~~~~~It----------HgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~ 284 (342)
...++..+++ ++. -|..++++||+++|+|+|+.+..+ ....+ ++...|...+. - +.+++.
T Consensus 249 l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~~~-~--~~~~l~ 318 (355)
T cd03799 249 VRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLVPP-G--DPEALA 318 (355)
T ss_pred HHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEeCC-C--CHHHHH
Confidence 4557788888 555 233568999999999999876532 22344 45447777763 2 789999
Q ss_pred HHHHHHHcCCh
Q 037221 285 KSVRELLEGEK 295 (342)
Q Consensus 285 ~~i~~ll~~~~ 295 (342)
++|.++++|+.
T Consensus 319 ~~i~~~~~~~~ 329 (355)
T cd03799 319 DAIERLLDDPE 329 (355)
T ss_pred HHHHHHHhCHH
Confidence 99999998876
No 64
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.51 E-value=6.1e-05 Score=68.81 Aligned_cols=266 Identities=13% Similarity=0.073 Sum_probs=132.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C-cccC---CC-CCc----chhhhHHHHHHHHHHHhhCCCCCCccEEEECCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQAL---DL-KHS----RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGF 70 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~---~~-p~~----~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~ 70 (342)
..+++.| .++||+|++++... .... . .... .. ... ........+..++++ .+||+|++...
T Consensus 19 ~~l~~~l-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dii~~~~~ 90 (353)
T cd03811 19 LNLANGL-DKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRK-------EKPDVVISHLT 90 (353)
T ss_pred HHHHHHH-HhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHh-------cCCCEEEEcCc
Confidence 4688999 99999999999876 4433 2 1110 00 000 011333444555555 37999998864
Q ss_pred --cchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhC----Cceeec
Q 037221 71 --MPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMF----PNLFTI 144 (342)
Q Consensus 71 --~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----p~~~~v 144 (342)
......++..+++|.+.................. ..........+.+++.+-... +...... .++..+
T Consensus 91 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~~~~vi 164 (353)
T cd03811 91 TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLL-LLIRKLYRRADKIVAVSEGVK-----EDLLKLLGIPPDKIEVI 164 (353)
T ss_pred cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHH-HHHHhhccccceEEEeccchh-----hhHHHhhcCCccccEEe
Confidence 2222333333478988876554433211111000 011112456666666553221 1111111 234444
Q ss_pred cccccccccccccchhHHHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhcC--CCCEEEEECCCCC--------
Q 037221 145 GPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLANS--NHPFLWIIRPDLF-------- 213 (342)
Q Consensus 145 Gpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~iw~~~~~~~-------- 213 (342)
.+............. .. . . ...+++.+++..|+.... ..+.+-..+..+... +.++++.-.+...
T Consensus 165 ~~~~~~~~~~~~~~~-~~-~-~-~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~ 240 (353)
T cd03811 165 YNPIDIEEIRALAEE-PL-E-L-GIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAK 240 (353)
T ss_pred cCCcChhhcCcccch-hh-h-c-CCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHH
Confidence 333221110000000 00 0 0 112345677777776521 223333333333332 3344433221110
Q ss_pred ---------------CHHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc
Q 037221 214 ---------------PQEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING 274 (342)
Q Consensus 214 ---------------pq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~ 274 (342)
...+++..+++ +|.- |..++++||+++|+|+|+.... .....+ ++.+.|...+.
T Consensus 241 ~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~ 313 (353)
T cd03811 241 ELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPV 313 (353)
T ss_pred hcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECC
Confidence 34568888887 6632 3356899999999999986553 445556 67778887764
Q ss_pred cccCCHhHH---HHHHHHHHcCCh
Q 037221 275 DEDGIRNVI---QKSVRELLEGEK 295 (342)
Q Consensus 275 ~~~~~~~~l---~~~i~~ll~~~~ 295 (342)
- +.+.+ .+.+..++.++.
T Consensus 314 -~--~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 314 -G--DEAALAAAALALLDLLLDPE 334 (353)
T ss_pred -C--CHHHHHHHHHHHHhccCChH
Confidence 2 56666 555555566554
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.47 E-value=0.00012 Score=69.81 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=50.9
Q ss_pred HHHhCCCCCcceee---ccC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLT---HSG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 216 ~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
..+|..+++ +|. +-| ..+++||+++|+|+|+....+ ....+ ++.+.|..++. - +.+++.++|.+++
T Consensus 297 ~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i-~~~~~g~~~~~-~--d~~~la~~i~~~l 366 (405)
T TIGR03449 297 VHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAV-ADGETGLLVDG-H--DPADWADALARLL 366 (405)
T ss_pred HHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhh-ccCCceEECCC-C--CHHHHHHHHHHHH
Confidence 457888887 653 223 458999999999999876543 33345 55567777653 3 7899999999999
Q ss_pred cCCh
Q 037221 292 EGEK 295 (342)
Q Consensus 292 ~~~~ 295 (342)
+++.
T Consensus 367 ~~~~ 370 (405)
T TIGR03449 367 DDPR 370 (405)
T ss_pred hCHH
Confidence 8765
No 66
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.45 E-value=0.00014 Score=67.30 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=50.0
Q ss_pred HHHhCCCCCcceeec------cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTH------SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 216 ~~lL~~~~~~~~ItH------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
..++..+++ +|.- |..++++||+++|+|+|+.+..+ ...+ ...+.|...+. - +.+++.+++.+
T Consensus 262 ~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~~-~--d~~~~~~~l~~ 330 (366)
T cd03822 262 PELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVPP-G--DPAALAEAIRR 330 (366)
T ss_pred HHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEcC-C--CHHHHHHHHHH
Confidence 457777887 5522 33558899999999999987654 2334 45567766653 2 78999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
+++|++
T Consensus 331 l~~~~~ 336 (366)
T cd03822 331 LLADPE 336 (366)
T ss_pred HHcChH
Confidence 999865
No 67
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=0.00012 Score=68.33 Aligned_cols=266 Identities=14% Similarity=0.137 Sum_probs=147.1
Q ss_pred hhhcchhhccC--CCeEEEEe-CCC-CCCC-C--cccCCC---CCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCc
Q 037221 2 LQLAKLPHHHK--GFHITFVN-FEN-KKNM-A--SQALDL---KHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFM 71 (342)
Q Consensus 2 l~la~~L~~~~--Gh~Vt~~~-~~~-~~~~-~--~~~~~~---p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~ 71 (342)
+.|-++| .++ ++.+++-| |+. .+.+ + +....- |- -....+..+++.+ +||++|.---.
T Consensus 66 ~pLv~~l-~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~----D~~~~v~rFl~~~-------~P~l~Ii~EtE 133 (419)
T COG1519 66 LPLVRAL-RERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPL----DLPIAVRRFLRKW-------RPKLLIIMETE 133 (419)
T ss_pred HHHHHHH-HHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCc----CchHHHHHHHHhc-------CCCEEEEEecc
Confidence 4677788 777 88888888 555 5555 3 110000 11 2345667777776 78988733234
Q ss_pred c--hHHHHHHHhCCceEEEecch-hhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhh-CCceeecccc
Q 037221 72 P--FTIEAAQQLGLSVVMFLTIS-ACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAM-FPNLFTIGPL 147 (342)
Q Consensus 72 ~--~~~~~A~~lgiP~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~p~~~~vGpl 147 (342)
. ....-++..|||.+.+..=- .-+...+.....+... ...+-+.++..+- .+. +.++.. .+++...|-+
T Consensus 134 lWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~--~~~~i~li~aQse--~D~---~Rf~~LGa~~v~v~GNl 206 (419)
T COG1519 134 LWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARL--LFKNIDLILAQSE--EDA---QRFRSLGAKPVVVTGNL 206 (419)
T ss_pred ccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHH--HHHhcceeeecCH--HHH---HHHHhcCCcceEEecce
Confidence 4 44556778899999875311 1111111111111111 1344555666552 221 122222 2346666655
Q ss_pred ccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcC--CCCEEEEECCCC-------------
Q 037221 148 QLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS--NHPFLWIIRPDL------------- 212 (342)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~iw~~~~~~------------- 212 (342)
-..-.. ....+.....|-..-+...-+.|..+|.. ...+.......+|... +...||+-+-.+
T Consensus 207 Kfd~~~-~~~~~~~~~~~r~~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~g 284 (419)
T COG1519 207 KFDIEP-PPQLAAELAALRRQLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKG 284 (419)
T ss_pred eecCCC-ChhhHHHHHHHHHhcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcC
Confidence 432211 11112222223222121022455444422 2334344444444432 244455432100
Q ss_pred -----------------C-------CHHHHhCCCCC----cceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHh
Q 037221 213 -----------------F-------PQEEVLNHPSI----GGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYK 264 (342)
Q Consensus 213 -----------------~-------pq~~lL~~~~~----~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~ 264 (342)
+ .+..++.-+++ |-|+-+||+| .+|.+++|+|+|.=|...-|..-++++ .
T Consensus 285 l~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~ 362 (419)
T COG1519 285 LSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-L 362 (419)
T ss_pred CeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-H
Confidence 0 45556666666 3345688887 679999999999999999999999999 8
Q ss_pred HhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 265 ERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 265 ~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+.|.|+.++ +.+.+.+++..+++|+.
T Consensus 363 ~~ga~~~v~-----~~~~l~~~v~~l~~~~~ 388 (419)
T COG1519 363 QAGAGLQVE-----DADLLAKAVELLLADED 388 (419)
T ss_pred hcCCeEEEC-----CHHHHHHHHHHhcCCHH
Confidence 999999998 77889999998888765
No 68
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.43 E-value=0.00013 Score=70.14 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=55.4
Q ss_pred HHHHhCCCCCcceee-c---cC---CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 215 QEEVLNHPSIGGFLT-H---SG---WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 215 q~~lL~~~~~~~~It-H---gG---~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
..++|..+++ ++. + -| -++++|++++|+|+|+.... .....+ ++-+.|..++ +++++.++|
T Consensus 308 ~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv-~~~~~G~lv~-----d~~~la~~i 375 (415)
T cd03816 308 YPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELV-KHGENGLVFG-----DSEELAEQL 375 (415)
T ss_pred HHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHh-cCCCCEEEEC-----CHHHHHHHH
Confidence 3456888898 663 1 12 34699999999999986542 344555 6767888774 789999999
Q ss_pred HHHHcC---Ch-HHHHHHHHHHHH
Q 037221 288 RELLEG---EK-GKQMRNKASEWK 307 (342)
Q Consensus 288 ~~ll~~---~~-~~~~r~~a~~l~ 307 (342)
.++++| +. .++|.+++++.+
T Consensus 376 ~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 376 IDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999998 43 233444444433
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.41 E-value=0.00016 Score=66.81 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHhCCCCCcceeecc----CCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTHS----GWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
...++..+++ +|.-. -.+++.||+++|+|+|+.+.. .....+ .. +.|...+. +.+++.++|.++
T Consensus 275 ~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~----~~~~~~~~i~~l 342 (375)
T cd03821 275 KAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDD----DVDALAAALRRA 342 (375)
T ss_pred HHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCC----ChHHHHHHHHHH
Confidence 4456888887 55432 256899999999999997643 344445 45 77776653 569999999999
Q ss_pred HcCCh
Q 037221 291 LEGEK 295 (342)
Q Consensus 291 l~~~~ 295 (342)
++|++
T Consensus 343 ~~~~~ 347 (375)
T cd03821 343 LELPQ 347 (375)
T ss_pred HhCHH
Confidence 99875
No 70
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=5e-05 Score=70.43 Aligned_cols=272 Identities=11% Similarity=0.032 Sum_probs=130.9
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cc-ccCCC---CCc-chh--hhHHHHHHHHHHHhhCCCCCCccEEEECCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-AS-QALDL---KHS-RIV--FYIDHNRAFILFVNQNGNQPAVSCIISDGFMP 72 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~-~~~~~---p~~-~~~--~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~ 72 (342)
..|++.| .++||+|++++... .... .. ..... +.. ... .....+...++ +. ..+||+|+++....
T Consensus 21 ~~l~~~L-~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~Dii~~~~~~~ 94 (357)
T cd03795 21 RDLAEGL-AARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLK-KL----AKKADVIHLHFPNP 94 (357)
T ss_pred HHHHHHH-HhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHH-hc----CCCCCEEEEecCcc
Confidence 4688999 99999999999876 4332 21 00000 000 000 01111111111 11 25899998765333
Q ss_pred hHHHHH--HHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCCceeeccccccc
Q 037221 73 FTIEAA--QQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLL 150 (342)
Q Consensus 73 ~~~~~A--~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~ 150 (342)
...... ...++|++...................... .....++.++..+....+. +........++..+..-...
T Consensus 95 ~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~s~~~~~~--~~~~~~~~~~~~~i~~gi~~ 171 (357)
T cd03795 95 LADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQR-RFLRRADAIVATSPNYAET--SPVLRRFRDKVRVIPLGLDP 171 (357)
T ss_pred hHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHH-HHHHhcCEEEeCcHHHHHH--HHHhcCCccceEEecCCCCh
Confidence 322222 224889887765433221111000000001 1245667777655322211 11111111233333322211
Q ss_pred cccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCC-CCEEEEECCCC----------------C
Q 037221 151 LYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSN-HPFLWIIRPDL----------------F 213 (342)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~iw~~~~~~----------------~ 213 (342)
......... ...... .+.+..+++..|+... .+....++++++... ..+++.-.+.. +
T Consensus 172 ~~~~~~~~~-~~~~~~--~~~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V 246 (357)
T cd03795 172 ARYPRPDAL-EEAIWR--RAAGRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRV 246 (357)
T ss_pred hhcCCcchh-hhHhhc--CCCCCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceE
Confidence 110000000 000111 1223456677777652 233445666666554 44444432211 1
Q ss_pred ------CH---HHHhCCCCCcceee---ccCC-chhHHHhhcCCcEEecccccchhhHHHHHHhH-hceEEEecccccCC
Q 037221 214 ------PQ---EEVLNHPSIGGFLT---HSGW-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKE-RGIGMEINGDEDGI 279 (342)
Q Consensus 214 ------pq---~~lL~~~~~~~~It---HgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-~G~G~~l~~~~~~~ 279 (342)
|+ ..++..+++..+-+ +-|. .++.||+++|+|+|+....+... .+ .. .+.|...+. - +
T Consensus 247 ~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i-~~~~~~g~~~~~-~--d 318 (357)
T cd03795 247 RFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YV-NLHGVTGLVVPP-G--D 318 (357)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HH-hhCCCceEEeCC-C--C
Confidence 43 45888888832223 2343 47899999999999976555443 23 32 466766652 3 7
Q ss_pred HhHHHHHHHHHHcCCh
Q 037221 280 RNVIQKSVRELLEGEK 295 (342)
Q Consensus 280 ~~~l~~~i~~ll~~~~ 295 (342)
.+++.++|.++++|++
T Consensus 319 ~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 319 PAALAEAIRRLLEDPE 334 (357)
T ss_pred HHHHHHHHHHHHHCHH
Confidence 8999999999999876
No 71
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.40 E-value=0.00018 Score=66.83 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=54.3
Q ss_pred CHHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ +|.-.. .++++||+++|+|+|+.. ...+...+ ++.|..+.. - +.+++.+++.+
T Consensus 255 ~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i-~~~g~~~~~---~--~~~~~~~~i~~ 322 (360)
T cd04951 255 DIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVV-GDSGLIVPI---S--DPEALANKIDE 322 (360)
T ss_pred cHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEec----CCChhhEe-cCCceEeCC---C--CHHHHHHHHHH
Confidence 45678888888 655432 568899999999999753 34455555 554444332 3 88999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHH
Q 037221 290 LLEGEKGKQMRNKASEWKKLVV 311 (342)
Q Consensus 290 ll~~~~~~~~r~~a~~l~~~~~ 311 (342)
+++++. .+++...+-++.+.
T Consensus 323 ll~~~~--~~~~~~~~~~~~~~ 342 (360)
T cd04951 323 ILKMSG--EERDIIGARRERIV 342 (360)
T ss_pred HHhCCH--HHHHHHHHHHHHHH
Confidence 995443 14444443333333
No 72
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.39 E-value=0.00032 Score=64.51 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=51.1
Q ss_pred CHHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ +|.... .+++.||+++|+|+|+... ..+...+ ++ .|..++. - +.+++.+++.+
T Consensus 261 ~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~-~~--~g~~~~~-~--~~~~l~~~i~~ 328 (365)
T cd03807 261 DVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELV-GD--TGFLVPP-G--DPEALAEAIEA 328 (365)
T ss_pred cHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHh-hc--CCEEeCC-C--CHHHHHHHHHH
Confidence 45678888887 776544 4799999999999998654 3445555 44 4555542 3 78999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
++++++
T Consensus 329 l~~~~~ 334 (365)
T cd03807 329 LLADPA 334 (365)
T ss_pred HHhChH
Confidence 999875
No 73
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.39 E-value=5.1e-05 Score=72.26 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=48.9
Q ss_pred HHhCCCCCcceee---ccC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHc
Q 037221 217 EVLNHPSIGGFLT---HSG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 217 ~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~ 292 (342)
.+|..+++ +|. +.| ..+++||+++|+|+|+... ......+ +.-..|..++. . +++++.++|.++++
T Consensus 296 ~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~~-~--d~~~la~~i~~ll~ 365 (396)
T cd03818 296 ALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVDF-F--DPDALAAAVIELLD 365 (396)
T ss_pred HHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcCC-C--CHHHHHHHHHHHHh
Confidence 46778887 553 222 2478999999999998654 2344445 44456766652 3 78999999999999
Q ss_pred CCh
Q 037221 293 GEK 295 (342)
Q Consensus 293 ~~~ 295 (342)
|++
T Consensus 366 ~~~ 368 (396)
T cd03818 366 DPA 368 (396)
T ss_pred CHH
Confidence 876
No 74
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.38 E-value=0.0002 Score=67.30 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred HhCCCCCcceeec----cCCchhHHHhhcCCcEEecc-cccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHc
Q 037221 218 VLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWP-FEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 218 lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P-~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~ 292 (342)
.+..+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+ ++-..|..++. - +.+++.++|.++++
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~-~--d~~~la~~i~~l~~ 323 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP-G--NIDEFVGKLNKVIS 323 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC-C--CHHHHHHHHHHHHh
Confidence 4556676 6643 23568999999999999876 432 11234 55556766653 4 89999999999999
Q ss_pred CCh---HHHHHHHHHHHHHH
Q 037221 293 GEK---GKQMRNKASEWKKL 309 (342)
Q Consensus 293 ~~~---~~~~r~~a~~l~~~ 309 (342)
|++ .+.++++++++.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 324 GEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred CcccCCHHHHHHHHHHhhHH
Confidence 886 23345554544443
No 75
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.38 E-value=0.00045 Score=66.07 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=53.4
Q ss_pred HHHhCCCCCcceeeccCC------chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTHSGW------GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHgG~------~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
..++..+++..+.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++. - +.+++.++|.+
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~-~--d~~~la~~i~~ 369 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP-E--SVEALVAAIAA 369 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC-C--CHHHHHHHHHH
Confidence 457888887434444332 2367999999999998754321 12233 4 67877763 3 78999999999
Q ss_pred HHcCCh-HHHHHHHHHH
Q 037221 290 LLEGEK-GKQMRNKASE 305 (342)
Q Consensus 290 ll~~~~-~~~~r~~a~~ 305 (342)
+++|+. .+++++++++
T Consensus 370 l~~~~~~~~~~~~~a~~ 386 (412)
T PRK10307 370 LARQALLRPKLGTVARE 386 (412)
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 998875 1234555544
No 76
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.38 E-value=0.00013 Score=68.62 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=53.3
Q ss_pred CHHHHhCCCCCcceee--c--cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLT--H--SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~It--H--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ +|. + |-..+++||+++|+|+|+....+ +...+ ++-..|..++. - +.+++.+++.+
T Consensus 265 ~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~~~-~--d~~~la~~i~~ 334 (374)
T TIGR03088 265 DVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALVPP-G--DAVALARALQP 334 (374)
T ss_pred CHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEeCC-C--CHHHHHHHHHH
Confidence 56678889998 663 2 34668999999999999976533 34444 55456776653 3 78999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
+++|+.
T Consensus 335 l~~~~~ 340 (374)
T TIGR03088 335 YVSDPA 340 (374)
T ss_pred HHhCHH
Confidence 998765
No 77
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.36 E-value=0.00011 Score=68.22 Aligned_cols=71 Identities=17% Similarity=0.092 Sum_probs=51.6
Q ss_pred CHHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ +|.- |-..+++||+++|+|+|+....+ ....+ +. +.|.... .- +++++.++|.+
T Consensus 259 ~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~-~~--~~~~~a~~i~~ 327 (358)
T cd03812 259 DVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL-DE--SPEIWAEEILK 327 (358)
T ss_pred CHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC-CC--CHHHHHHHHHH
Confidence 55678888887 5543 44678999999999999866544 23344 44 5555544 23 67999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
+++|+.
T Consensus 328 l~~~~~ 333 (358)
T cd03812 328 LKSEDR 333 (358)
T ss_pred HHhCcc
Confidence 999987
No 78
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.33 E-value=0.00016 Score=68.83 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=46.5
Q ss_pred CHHHHhCCCCCcceeec---cCCc-hhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH---SGWG-STIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....+++.+++ +|.- -|.| +++||+++|+|+|+.+..+ ....+ ++ |.+.... . +.+++.+++.+
T Consensus 262 ~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~~--~--~~~~l~~~l~~ 329 (398)
T cd03796 262 RVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLAE--P--DVESIVRKLEE 329 (398)
T ss_pred HHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-CceeecC--C--CHHHHHHHHHH
Confidence 34558888887 6542 2443 9999999999999977643 22233 33 3333322 3 78999999999
Q ss_pred HHcCC
Q 037221 290 LLEGE 294 (342)
Q Consensus 290 ll~~~ 294 (342)
++++.
T Consensus 330 ~l~~~ 334 (398)
T cd03796 330 AISIL 334 (398)
T ss_pred HHhCh
Confidence 98864
No 79
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.29 E-value=0.00036 Score=65.97 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHhCCCCCcceeecc---C-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTHS---G-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
..+|..+++ ++... | ..+++||+++|+|+|+.-..+ ....+ ...+.|...+ . +.+++.++|.+++
T Consensus 294 ~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~~--~--~~~~~a~~i~~l~ 362 (392)
T cd03805 294 ELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLCE--P--TPEEFAEAMLKLA 362 (392)
T ss_pred HHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEeC--C--CHHHHHHHHHHHH
Confidence 457888887 65321 2 357899999999999875433 33345 4556677665 3 7899999999999
Q ss_pred cCCh
Q 037221 292 EGEK 295 (342)
Q Consensus 292 ~~~~ 295 (342)
++++
T Consensus 363 ~~~~ 366 (392)
T cd03805 363 NDPD 366 (392)
T ss_pred hChH
Confidence 9875
No 80
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.26 E-value=0.00012 Score=67.82 Aligned_cols=273 Identities=11% Similarity=0.041 Sum_probs=131.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cc--ccCCC----CCc----chhhhHHHHHHHHHHHhhCCCCCCccEEEECC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-AS--QALDL----KHS----RIVFYIDHNRAFILFVNQNGNQPAVSCIISDG 69 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~--~~~~~----p~~----~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~ 69 (342)
..|++.| +++||+|++++... .... .. ..... ... ............+.. .+||+|++..
T Consensus 22 ~~l~~~L-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Dii~~~~ 93 (365)
T cd03809 22 RELLRAL-LKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLLLLL-------LGLDLLHSPH 93 (365)
T ss_pred HHHHHHH-HhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHHhhh-------cCCCeeeecc
Confidence 5789999 99999999999877 4443 21 11110 000 000111111112222 4799999776
Q ss_pred CcchHHHHHHHhCCceEEEecchhhHhhhhhhhh---hhh--ccccccccceEEEEcCchhhhHHHHHHHhhhCC----c
Q 037221 70 FMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFR---TLK--EKGLVASKASGIIFHTFDALEVQVLDAISAMFP----N 140 (342)
Q Consensus 70 ~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p----~ 140 (342)
...... ...++|++................. ... ........++.++..+-. ..+......+ +
T Consensus 94 ~~~~~~---~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~-----~~~~~~~~~~~~~~~ 165 (365)
T cd03809 94 NTAPLL---RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEA-----TKRDLLRYLGVPPDK 165 (365)
T ss_pred cccCcc---cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHH-----HHHHHHHHhCcCHHH
Confidence 444333 6789999987654322111100000 000 001114566777766532 1121122111 2
Q ss_pred eeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccC-CHHHHHHHHHHHhcCC--CCEEEEECCCC-----
Q 037221 141 LFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVV-KKQQFIEVAMGLANSN--HPFLWIIRPDL----- 212 (342)
Q Consensus 141 ~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~--~~~iw~~~~~~----- 212 (342)
+..+........... ..... ...... ..+..+++..|+.... ..+.+.+.+..+...+ ..+++.-....
T Consensus 166 ~~vi~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~ 242 (365)
T cd03809 166 IVVIPLGVDPRFRPP-PAEAE-VLRALY-LLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEEL 242 (365)
T ss_pred EEeeccccCccccCC-CchHH-HHHHhc-CCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHH
Confidence 333332222111100 01111 112222 2233456667776532 2344433334343332 44444322110
Q ss_pred ------------C------C---HHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhc
Q 037221 213 ------------F------P---QEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERG 267 (342)
Q Consensus 213 ------------~------p---q~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G 267 (342)
+ | ...++..+++ ++.- +..++++||+++|+|+|+....+ ....+ .+
T Consensus 243 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~-- 313 (365)
T cd03809 243 LARLRELGLGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GD-- 313 (365)
T ss_pred HHHHHHcCCCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cC--
Confidence 0 2 3457778887 4422 33568999999999999865422 11122 33
Q ss_pred eEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 037221 268 IGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKK 308 (342)
Q Consensus 268 ~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~ 308 (342)
.|..+. .. +.+++.+++.+++.|+. .+.+..+-+.
T Consensus 314 ~~~~~~-~~--~~~~~~~~i~~l~~~~~---~~~~~~~~~~ 348 (365)
T cd03809 314 AALYFD-PL--DPEALAAAIERLLEDPA---LREELRERGL 348 (365)
T ss_pred ceeeeC-CC--CHHHHHHHHHHHhcCHH---HHHHHHHHHH
Confidence 233333 23 78999999999998887 5554444333
No 81
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.26 E-value=0.00029 Score=65.50 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=50.4
Q ss_pred HHHhCCCCCcceeecc----CCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTHS----GWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
..++..+++ +|... ..++++||+++|+|+|+....+ ....+ .+.+.|..++. . +.+++.+++.+++
T Consensus 259 ~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~-~~~~~g~~~~~-~--~~~~~~~~l~~l~ 328 (365)
T cd03825 259 ALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIV-DHGVTGYLAKP-G--DPEDLAEGIEWLL 328 (365)
T ss_pred HHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----Chhhe-eCCCceEEeCC-C--CHHHHHHHHHHHH
Confidence 357888888 77643 3578999999999999875432 22234 44456666653 3 7899999999999
Q ss_pred cCCh
Q 037221 292 EGEK 295 (342)
Q Consensus 292 ~~~~ 295 (342)
+|++
T Consensus 329 ~~~~ 332 (365)
T cd03825 329 ADPD 332 (365)
T ss_pred hCHH
Confidence 8876
No 82
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.23 E-value=4.5e-06 Score=66.26 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=47.3
Q ss_pred CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccc----ccchhhHHHHHHhHhceEEEec
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPF----EGDQMTNCRYTYKERGIGMEIN 273 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~~G~G~~l~ 273 (342)
...+....+++ +|+|+|.||++|.|..|+|.|+++- -.+|..-|..+ .+.|.=....
T Consensus 73 sl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL-~~egyL~~C~ 133 (170)
T KOG3349|consen 73 SLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQL-AEEGYLYYCT 133 (170)
T ss_pred cHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHH-HhcCcEEEee
Confidence 44666677888 9999999999999999999999994 35899999999 6777665553
No 83
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.20 E-value=0.0001 Score=69.14 Aligned_cols=251 Identities=14% Similarity=0.091 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEE-ECCCcc--hHHHHHHHhCCc--eEEEe-cchhhHhhhhhhhhhhhcccccccc
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCII-SDGFMP--FTIEAAQQLGLS--VVMFL-TISACSFMGYKQFRTLKEKGLVASK 114 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI-~D~~~~--~~~~~A~~lgiP--~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (342)
.....++++.+.+.+ .+||+|| .|.-.+ --...+++.|+| ++.+. ++.+.+... +-......
T Consensus 66 ~~~~~~~~~~~~~~~----~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr~~--------R~~~i~~~ 133 (373)
T PF02684_consen 66 KLKRLFRKLVERIKE----EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWRPG--------RAKKIKKY 133 (373)
T ss_pred HHHHHHHHHHHHHHH----cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeeeCcc--------HHHHHHHH
Confidence 333444445554443 7999997 775333 445556688988 55543 333322111 00000112
Q ss_pred ceEEEEcCchhhhHHHHHHHhhhCCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHH
Q 037221 115 ASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVA 194 (342)
Q Consensus 115 ~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~ 194 (342)
.|.+++ ...+|.++ ++...-++.|||--+.+...... ......+.+ -.+++++|.+--||...-=...+..++
T Consensus 134 ~D~ll~--ifPFE~~~---y~~~g~~~~~VGHPl~d~~~~~~-~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l 206 (373)
T PF02684_consen 134 VDHLLV--IFPFEPEF---YKKHGVPVTYVGHPLLDEVKPEP-DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFL 206 (373)
T ss_pred HhheeE--CCcccHHH---HhccCCCeEEECCcchhhhccCC-CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 232222 22344443 23333469999955444332211 122333333 235678899999997531122233333
Q ss_pred HHH---hc--CCCCEEEEECCCCC----------------------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEE
Q 037221 195 MGL---AN--SNHPFLWIIRPDLF----------------------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMI 247 (342)
Q Consensus 195 ~al---~~--~~~~~iw~~~~~~~----------------------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i 247 (342)
++. .. .+.+|++..-+... .-.+++..+++ .+.-.| ..++|+..+|+|||
T Consensus 207 ~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~V 283 (373)
T PF02684_consen 207 EAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMV 283 (373)
T ss_pred HHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEE
Confidence 332 22 24455544322110 45667777886 444444 45789999999998
Q ss_pred ec-ccccchhhHHHHHHhHhceEEEec--------------ccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 037221 248 CW-PFEGDQMTNCRYTYKERGIGMEIN--------------GDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVE 312 (342)
Q Consensus 248 ~~-P~~~DQ~~na~~~~~~~G~G~~l~--------------~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 312 (342)
++ -...=...-|++++ +... +.+. ... +++.+.+++.+++.|.+ .++..+...+.+.+
T Consensus 284 v~Yk~~~lt~~iak~lv-k~~~-isL~Niia~~~v~PEliQ~~~--~~~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 284 VAYKVSPLTYFIAKRLV-KVKY-ISLPNIIAGREVVPELIQEDA--TPENIAAELLELLENPE---KRKKQKELFREIRQ 356 (373)
T ss_pred EEEcCcHHHHHHHHHhh-cCCE-eechhhhcCCCcchhhhcccC--CHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH
Confidence 75 33333444566662 3322 2221 145 99999999999999987 44444444444444
Q ss_pred HcCCCCch
Q 037221 313 AAAPDGPS 320 (342)
Q Consensus 313 a~~~~g~~ 320 (342)
..+.|.++
T Consensus 357 ~~~~~~~~ 364 (373)
T PF02684_consen 357 LLGPGASS 364 (373)
T ss_pred hhhhccCC
Confidence 43345544
No 84
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.16 E-value=0.00091 Score=64.68 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=44.6
Q ss_pred eeecc---C-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 227 FLTHS---G-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 227 ~ItHg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
||... | ..+++||+++|+|+|+....+ +...+ ++-..|..++. - +++++.++|.++++|+.
T Consensus 344 ~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~lv~~-~--d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 344 FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLLVDV-L--DLEAIASALEDALSDSS 408 (439)
T ss_pred EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEEeCC-C--CHHHHHHHHHHHHhCHH
Confidence 77543 3 458999999999999886533 33444 44456776653 3 88999999999999875
No 85
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.12 E-value=0.00045 Score=64.54 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=53.7
Q ss_pred HHHHhCCCCCcceeec----------cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHH
Q 037221 215 QEEVLNHPSIGGFLTH----------SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQ 284 (342)
Q Consensus 215 q~~lL~~~~~~~~ItH----------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~ 284 (342)
...++..+++ +|.. |-.+++.||+++|+|+|+.+..+ +...+ .+.+.|..++. - +.+++.
T Consensus 258 l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g~~~~~-~--d~~~l~ 327 (367)
T cd05844 258 VRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETGLLVPE-G--DVAALA 327 (367)
T ss_pred HHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCeeEEECC-C--CHHHHH
Confidence 4456888888 6532 23568999999999999877643 55556 56678877763 3 789999
Q ss_pred HHHHHHHcCCh
Q 037221 285 KSVRELLEGEK 295 (342)
Q Consensus 285 ~~i~~ll~~~~ 295 (342)
++|.++++|++
T Consensus 328 ~~i~~l~~~~~ 338 (367)
T cd05844 328 AALGRLLADPD 338 (367)
T ss_pred HHHHHHHcCHH
Confidence 99999999876
No 86
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.00 E-value=0.0026 Score=66.63 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=47.6
Q ss_pred eeec---cC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChH-HHHHH
Q 037221 227 FLTH---SG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKG-KQMRN 301 (342)
Q Consensus 227 ~ItH---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~-~~~r~ 301 (342)
||.- =| ..+++||+++|+|+|+....+ ....+ +.-..|+.++. - +++.+.++|.++++|+.. ++|.+
T Consensus 575 FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP-~--D~eaLA~AL~~LL~Dpelr~~m~~ 646 (1050)
T TIGR02468 575 FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP-H--DQQAIADALLKLVADKQLWAECRQ 646 (1050)
T ss_pred eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC-C--CHHHHHHHHHHHhhCHHHHHHHHH
Confidence 6653 23 358899999999999987543 22233 34445776663 3 889999999999998762 23444
Q ss_pred HHHH
Q 037221 302 KASE 305 (342)
Q Consensus 302 ~a~~ 305 (342)
++.+
T Consensus 647 ~gr~ 650 (1050)
T TIGR02468 647 NGLK 650 (1050)
T ss_pred HHHH
Confidence 4443
No 87
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.96 E-value=0.0014 Score=60.28 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHhCCCCCcceee----ccC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLT----HSG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 216 ~~lL~~~~~~~~It----HgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
..+++.+++ ++. +-| ..+++||+++|+|+|+....+ +...+ ++...|...+ ..+++.+++.++
T Consensus 238 ~~~~~~~d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i-~~~~~g~l~~-----~~~~l~~~l~~l 305 (335)
T cd03802 238 AELLGNARA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVV-EDGVTGFLVD-----SVEELAAAVARA 305 (335)
T ss_pred HHHHHhCcE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhhe-eCCCcEEEeC-----CHHHHHHHHHHH
Confidence 457888887 442 234 347999999999999876532 23344 4433676665 578899999888
Q ss_pred HcC
Q 037221 291 LEG 293 (342)
Q Consensus 291 l~~ 293 (342)
+..
T Consensus 306 ~~~ 308 (335)
T cd03802 306 DRL 308 (335)
T ss_pred hcc
Confidence 654
No 88
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.96 E-value=0.00062 Score=65.73 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=47.9
Q ss_pred CHHHHhCCCCCcceeecc----CCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHS----GWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
+..+++...++ ||.-+ =.++++||+++|+|+|+.-..+ | ..+ .+-+-|...+ +.+++.+++.+
T Consensus 293 ~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~~-----~~~~~a~ai~~ 359 (462)
T PLN02846 293 HADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTYD-----DGKGFVRATLK 359 (462)
T ss_pred CHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEecC-----CHHHHHHHHHH
Confidence 44568888887 87663 3568889999999999976543 2 333 3434444443 78899999999
Q ss_pred HHcCC
Q 037221 290 LLEGE 294 (342)
Q Consensus 290 ll~~~ 294 (342)
+|.++
T Consensus 360 ~l~~~ 364 (462)
T PLN02846 360 ALAEE 364 (462)
T ss_pred HHccC
Confidence 99864
No 89
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.93 E-value=0.00064 Score=66.93 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhCCCCCCccEEE-ECCCc--chHHHHHHHhCC--ceEEEec-chhhHhhhhhhhhhhhccccccccceE
Q 037221 44 DHNRAFILFVNQNGNQPAVSCII-SDGFM--PFTIEAAQQLGL--SVVMFLT-ISACSFMGYKQFRTLKEKGLVASKASG 117 (342)
Q Consensus 44 ~~~~~li~~~~~~~~~~~pD~vI-~D~~~--~~~~~~A~~lgi--P~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (342)
..++++.+.+.+ ++||++| .|.-. .-....+++.|+ |++.+.+ +.+..... +-....+..|.
T Consensus 297 ~~~~~l~~~i~~----~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAWR~~--------Rikki~k~vD~ 364 (608)
T PRK01021 297 YRYRKLYKTILK----TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAWRPK--------RKTILEKYLDL 364 (608)
T ss_pred HHHHHHHHHHHh----cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeCcc--------hHHHHHHHhhh
Confidence 334444444443 7999998 57633 345566778896 9887653 22221100 00000112222
Q ss_pred EEEcCchhhhHHHHHHHhhhCCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH
Q 037221 118 IIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGL 197 (342)
Q Consensus 118 ~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al 197 (342)
+++ ...+|.+++ +...-++.|||--..+... .....++..+-+.-.+++++|-+--||...-=...+..++++.
T Consensus 365 ll~--IfPFE~~~y---~~~gv~v~yVGHPL~d~i~-~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa 438 (608)
T PRK01021 365 LLL--ILPFEQNLF---KDSPLRTVYLGHPLVETIS-SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAF 438 (608)
T ss_pred hee--cCccCHHHH---HhcCCCeEEECCcHHhhcc-cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 222 223455433 3444569999955544321 1112223333333344668899999997532223333344444
Q ss_pred h--cC--CCCEEEEECCCC------------------C--C--HHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecc-
Q 037221 198 A--NS--NHPFLWIIRPDL------------------F--P--QEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWP- 250 (342)
Q Consensus 198 ~--~~--~~~~iw~~~~~~------------------~--p--q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P- 250 (342)
+ .. +.+|+....+.. . . ..+++..|++ .+.-+|- .++|+..+|+||+++=
T Consensus 439 ~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK 515 (608)
T PRK01021 439 LASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQ 515 (608)
T ss_pred HHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEe
Confidence 4 22 334444221110 0 1 2456777776 6665554 4679999999998742
Q ss_pred cccchhhHHHHHHhHh-----c-----eEEEecccc-----cCCHhHHHHHHHHHHcCChH-HHHHHHHHHHHHHHH
Q 037221 251 FEGDQMTNCRYTYKER-----G-----IGMEINGDE-----DGIRNVIQKSVRELLEGEKG-KQMRNKASEWKKLVV 311 (342)
Q Consensus 251 ~~~DQ~~na~~~~~~~-----G-----~G~~l~~~~-----~~~~~~l~~~i~~ll~~~~~-~~~r~~a~~l~~~~~ 311 (342)
...=-..-+++++ +. + +|..+-.++ +.+++.+.+++ ++|.|++. +++++..+++.+.+.
T Consensus 516 ~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 516 LRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred cCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 2222233455553 31 0 111111111 22899999997 78887751 234455555555443
No 90
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.90 E-value=0.0056 Score=57.65 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=48.4
Q ss_pred HHHHhCCCCCcceeecc---C-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTHS---G-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
...+++.+++ |+.-. | ..++.||+++|+|+|+....+ ....+ +.-..|...+ +.+.+..+|.++
T Consensus 267 ~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~-----~~~~~a~~i~~l 334 (372)
T cd03792 267 VNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD-----TVEEAAVRILYL 334 (372)
T ss_pred HHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC-----CcHHHHHHHHHH
Confidence 4467888888 77543 2 348999999999999876533 22334 4555676554 566778899999
Q ss_pred HcCCh
Q 037221 291 LEGEK 295 (342)
Q Consensus 291 l~~~~ 295 (342)
+.+++
T Consensus 335 l~~~~ 339 (372)
T cd03792 335 LRDPE 339 (372)
T ss_pred HcCHH
Confidence 98876
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.90 E-value=0.0003 Score=66.32 Aligned_cols=220 Identities=16% Similarity=0.110 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEEC--CCcc-hHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceE
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISD--GFMP-FTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASG 117 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D--~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (342)
.+...+.+++++ .+||+||+- .+.. .+..+|..+|||++.+.-+--... ...+..+. ....-+++
T Consensus 80 ~~~~~~~~~~~~-------~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~----~~eE~~r~-~i~~la~l 147 (365)
T TIGR03568 80 LTIIGFSDAFER-------LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEG----AIDESIRH-AITKLSHL 147 (365)
T ss_pred HHHHHHHHHHHH-------hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCC----CchHHHHH-HHHHHHhh
Confidence 444455555555 489999843 3333 778899999999997654422110 00111110 11122233
Q ss_pred EEEcCchhhhHHHHHHHhh-hC-C-ceeecccccccccccc-ccchhHHHHHHhcCCCCceEEEEecccc--c-CCHHHH
Q 037221 118 IIFHTFDALEVQVLDAISA-MF-P-NLFTIGPLQLLLYQNL-WKKETECLRWLDSKLPNSVIYVNFGIAI--V-VKKQQF 190 (342)
Q Consensus 118 ~l~~~~~~l~~~~~~~~~~-~~-p-~~~~vGpl~~~~~~~~-~~~~~~~~~~l~~~~~~~~V~vs~Gs~~--~-~~~~~~ 190 (342)
.+.++- ...+.... .. + +++.+|-...+.-... ......+.+.+.-.++++.++|++=... . ...+.+
T Consensus 148 ~f~~t~-----~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l 222 (365)
T TIGR03568 148 HFVATE-----EYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQI 222 (365)
T ss_pred ccCCCH-----HHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHH
Confidence 333331 11121111 11 2 4667776544321100 0112223333322223467777775432 2 235678
Q ss_pred HHHHHHHhcCCCCEEEEE--C-C----------------CCC---------CHHHHhCCCCCcceeeccCCchhHHHhhc
Q 037221 191 IEVAMGLANSNHPFLWII--R-P----------------DLF---------PQEEVLNHPSIGGFLTHSGWGSTIENLSA 242 (342)
Q Consensus 191 ~~~~~al~~~~~~~iw~~--~-~----------------~~~---------pq~~lL~~~~~~~~ItHgG~~s~~eal~~ 242 (342)
..+++++...+.++++.+ . + +++ ....++.++++ +||-.+.+. .||.+.
T Consensus 223 ~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~l 299 (365)
T TIGR03568 223 KELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSF 299 (365)
T ss_pred HHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-Hhhhhc
Confidence 888888877765555543 1 1 011 45558888898 998875555 999999
Q ss_pred CCcEEecccccchhhHHHHHHhHhceEEE-ecccccCCHhHHHHHHHHHHc
Q 037221 243 GVPMICWPFEGDQMTNCRYTYKERGIGME-INGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 243 GvP~i~~P~~~DQ~~na~~~~~~~G~G~~-l~~~~~~~~~~l~~~i~~ll~ 292 (342)
|+|.|.+- +.+ .. .+.|..+. +. . ++++|.+++.++++
T Consensus 300 g~Pvv~l~---~R~----e~-~~~g~nvl~vg--~--~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 300 GVPTINIG---TRQ----KG-RLRADSVIDVD--P--DKEEIVKAIEKLLD 338 (365)
T ss_pred CCCEEeec---CCc----hh-hhhcCeEEEeC--C--CHHHHHHHHHHHhC
Confidence 99999763 211 11 12243332 32 4 88999999999543
No 92
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.89 E-value=0.0053 Score=57.00 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=40.9
Q ss_pred HHhCCCCCcceeeccCC-----chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 217 EVLNHPSIGGFLTHSGW-----GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 217 ~lL~~~~~~~~ItHgG~-----~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
.++..+++ ++-+.-. +++.||+++|+|+|+....+ +...+ +. .|...+ ..+.+.+++.+++
T Consensus 263 ~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~-----~~~~l~~~i~~l~ 328 (363)
T cd04955 263 ELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFK-----VGDDLASLLEELE 328 (363)
T ss_pred HHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEec-----CchHHHHHHHHHH
Confidence 46667776 5554333 47899999999999875532 12222 32 233332 1222999999999
Q ss_pred cCCh
Q 037221 292 EGEK 295 (342)
Q Consensus 292 ~~~~ 295 (342)
+|++
T Consensus 329 ~~~~ 332 (363)
T cd04955 329 ADPE 332 (363)
T ss_pred hCHH
Confidence 8875
No 93
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=97.87 E-value=5.3e-06 Score=66.74 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=59.4
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCCCcccCCC----CC-c--c-h-h--------h---hHHHHHHHHHHHhh----
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNMASQALDL----KH-S--R-I-V--------F---YIDHNRAFILFVNQ---- 55 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~~~----p~-~--~-~-~--------~---~~~~~~~li~~~~~---- 55 (342)
+++||++| ++|||+|++++++. .+.+...+++. ++ . . . . . ....+...+++...
T Consensus 15 ~lala~~L-~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (139)
T PF03033_consen 15 FLALARAL-RRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEEAMRILARFRPDLVV 93 (139)
T ss_dssp HHHHHHHH-HHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHH-hccCCeEEEeecccceecccccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhHHHHHhhccCcchhh
Confidence 47899999 99999999999998 77772112111 11 1 0 0 0 1 22223333433322
Q ss_pred -CCCCCCccEEEECCCcchHHHHHHHhCCceEEEecchhhH
Q 037221 56 -NGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACS 95 (342)
Q Consensus 56 -~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 95 (342)
.+....+|+++.+.....+..+|+++|||.+.....+.+.
T Consensus 94 ~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 94 AAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 1223467888888888899999999999999987766554
No 94
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00059 Score=53.47 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=46.9
Q ss_pred CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccccc--------chhhHHHHHHhHhceEEEecc
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEG--------DQMTNCRYTYKERGIGMEING 274 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~--------DQ~~na~~~~~~~G~G~~l~~ 274 (342)
-...+...+++ +|+|+|.||++.++..++|.|++|-.. +|..-|..+ .+.+.-+....
T Consensus 58 kiQsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kl-ae~~~vv~~sp 123 (161)
T COG5017 58 KIQSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKL-AEINYVVACSP 123 (161)
T ss_pred HHHHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHH-HhcCceEEEcC
Confidence 35556677777 999999999999999999999999643 577788888 67777777663
No 95
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.0039 Score=57.90 Aligned_cols=255 Identities=16% Similarity=0.102 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEE--ECCCcc-hHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceE
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCII--SDGFMP-FTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASG 117 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI--~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (342)
.+...+.+++++. +||+|+ .|-.+. ++..+|-..+||+.-+..+--.... ++|+-.-+.....-+++
T Consensus 79 ~~i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~---~~PEE~NR~l~~~~S~~ 148 (383)
T COG0381 79 NIIEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDL---YFPEEINRRLTSHLSDL 148 (383)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCC---CCcHHHHHHHHHHhhhh
Confidence 5556666777764 899998 454444 5588889999999987654322111 12222111111233444
Q ss_pred EEEcCchhhhHHHHHHH-hhhCC--ceeecccccccccccc---ccchhHHHHH-HhcCCCCceEEEEecccccCCHHHH
Q 037221 118 IIFHTFDALEVQVLDAI-SAMFP--NLFTIGPLQLLLYQNL---WKKETECLRW-LDSKLPNSVIYVNFGIAIVVKKQQF 190 (342)
Q Consensus 118 ~l~~~~~~l~~~~~~~~-~~~~p--~~~~vGpl~~~~~~~~---~~~~~~~~~~-l~~~~~~~~V~vs~Gs~~~~~~~~~ 190 (342)
.+.++- ..-+.+ +-..+ +++.+|-...+.-... ...+...... +. .+.+..+++++=-..+.. +.+
T Consensus 149 hfapte-----~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~-~~~~~~iLvT~HRreN~~-~~~ 221 (383)
T COG0381 149 HFAPTE-----IARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLD-DKDKKYILVTAHRRENVG-EPL 221 (383)
T ss_pred hcCChH-----HHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhc-cccCcEEEEEcchhhccc-ccH
Confidence 455442 111111 22222 4777886554321100 1111122211 22 234457888764443333 334
Q ss_pred HHHHH----HHhcC-CCCEEEEECCCCC------------------------CHHHHhCCCCCcceeeccCCchhHHHhh
Q 037221 191 IEVAM----GLANS-NHPFLWIIRPDLF------------------------PQEEVLNHPSIGGFLTHSGWGSTIENLS 241 (342)
Q Consensus 191 ~~~~~----al~~~-~~~~iw~~~~~~~------------------------pq~~lL~~~~~~~~ItHgG~~s~~eal~ 241 (342)
+.+.. .++.. +..++.-..+... +...++.++-+ ++|-.|. -.-||-.
T Consensus 222 ~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~ 298 (383)
T COG0381 222 EEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPS 298 (383)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHh
Confidence 44444 44444 4555554432210 67778888876 8887763 4569999
Q ss_pred cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchH
Q 037221 242 AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSS 321 (342)
Q Consensus 242 ~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~ 321 (342)
.|+|.+++=...+++. .+ +.|.-+.+. . +.+.+.+++.+++++++ ..++......-+-+ |. +.
T Consensus 299 lg~Pvl~lR~~TERPE---~v--~agt~~lvg--~--~~~~i~~~~~~ll~~~~---~~~~m~~~~npYgd----g~-as 361 (383)
T COG0381 299 LGKPVLVLRDTTERPE---GV--EAGTNILVG--T--DEENILDAATELLEDEE---FYERMSNAKNPYGD----GN-AS 361 (383)
T ss_pred cCCcEEeeccCCCCcc---ce--ecCceEEeC--c--cHHHHHHHHHHHhhChH---HHHHHhcccCCCcC----cc-hH
Confidence 9999999988888887 23 335555554 4 78999999999999987 66655554444442 33 33
Q ss_pred HHHHHHHHHHh
Q 037221 322 KNLVKLVNESL 332 (342)
Q Consensus 322 ~~~~~~i~~l~ 332 (342)
+.+.+++....
T Consensus 362 ~rIv~~l~~~~ 372 (383)
T COG0381 362 ERIVEILLNYF 372 (383)
T ss_pred HHHHHHHHHHh
Confidence 55555555433
No 96
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.0049 Score=57.17 Aligned_cols=263 Identities=12% Similarity=0.066 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEE-ECCCcc--hHHHHHHHhC--CceEEEec-chhhHhhhhhhhhhhhcccccccc
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCII-SDGFMP--FTIEAAQQLG--LSVVMFLT-ISACSFMGYKQFRTLKEKGLVASK 114 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI-~D~~~~--~~~~~A~~lg--iP~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 114 (342)
.+..-.+++++.+.+ .+||++| .|.-.+ -...-.++.| ||.+.+.. +.+.+... +.......
T Consensus 69 ~llk~~~~~~~~i~~----~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~--------Ra~~i~~~ 136 (381)
T COG0763 69 RLLKIRRELVRYILA----NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPK--------RAVKIAKY 136 (381)
T ss_pred HHHHHHHHHHHHHHh----cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeechh--------hHHHHHHH
Confidence 444445555555443 6999998 665333 3334445667 99888753 32222111 00000222
Q ss_pred ceEEEEcCchhhhHHHHHHHhhhCCceeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCH---HHHH
Q 037221 115 ASGIIFHTFDALEVQVLDAISAMFPNLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKK---QQFI 191 (342)
Q Consensus 115 ~~~~l~~~~~~l~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~---~~~~ 191 (342)
.|.++. +-.+|++++ .+..-+..|||--..+... .......+.+-+....+++++.+--||...-=. ..+.
T Consensus 137 ~D~lLa--ilPFE~~~y---~k~g~~~~yVGHpl~d~i~-~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 137 VDHLLA--ILPFEPAFY---DKFGLPCTYVGHPLADEIP-LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred hhHeee--ecCCCHHHH---HhcCCCeEEeCChhhhhcc-ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 233322 223444432 3332238999965544432 222233455555555677899999999753111 2222
Q ss_pred HHHHHHh-c-CCCCEEEEECCCC---------------C-------CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEE
Q 037221 192 EVAMGLA-N-SNHPFLWIIRPDL---------------F-------PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMI 247 (342)
Q Consensus 192 ~~~~al~-~-~~~~~iw~~~~~~---------------~-------pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i 247 (342)
..+..|+ + .+.+|+.-.-+.. . .-.+++..+|+ .+.-+|- -++|+..+|+|||
T Consensus 211 ~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~V 287 (381)
T COG0763 211 QAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMV 287 (381)
T ss_pred HHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEE
Confidence 2233333 2 2456654332211 0 22336666676 5555553 4579999999998
Q ss_pred ecccc-cchhhHHHHHHhHhceE----------EEec---ccccCCHhHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHH
Q 037221 248 CWPFE-GDQMTNCRYTYKERGIG----------MEIN---GDEDGIRNVIQKSVRELLEGEK-GKQMRNKASEWKKLVVE 312 (342)
Q Consensus 248 ~~P~~-~DQ~~na~~~~~~~G~G----------~~l~---~~~~~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~~ 312 (342)
+.=-. .=-+.-+++.+ +.... +..+ .+. +++.|.+++..++.|+. -+.+++...++.+.++
T Consensus 288 v~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~--~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~- 363 (381)
T COG0763 288 VAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDC--TPENLARALEELLLNGDRREALKEKFRELHQYLR- 363 (381)
T ss_pred EEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhc--CHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc-
Confidence 74211 11122344442 22211 1111 145 89999999999999883 1346666666666666
Q ss_pred HcCCCCchHHHHHHHHHHH
Q 037221 313 AAAPDGPSSKNLVKLVNES 331 (342)
Q Consensus 313 a~~~~g~~~~~~~~~i~~l 331 (342)
+++++..+++.+++.+
T Consensus 364 ---~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 364 ---EDPASEIAAQAVLELL 379 (381)
T ss_pred ---CCcHHHHHHHHHHHHh
Confidence 4556666666555543
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.54 E-value=0.004 Score=58.00 Aligned_cols=108 Identities=12% Similarity=0.192 Sum_probs=70.5
Q ss_pred EEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC-----------C------C---HHHHhCCCCCcceee--ccC
Q 037221 175 IYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL-----------F------P---QEEVLNHPSIGGFLT--HSG 232 (342)
Q Consensus 175 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~-----------~------p---q~~lL~~~~~~~~It--HgG 232 (342)
.++..|+... .+....++++++..+.++++.-.+.. + | ...++..+++ ++. .-|
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~e~ 272 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARA--FLFPAEED 272 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--EEECCcCC
Confidence 4455666652 23455567777776666665443211 1 4 3567888998 553 333
Q ss_pred C-chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 233 W-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 233 ~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
. .++.||+++|+|+|+....+ ....+ ++-+.|..++. - +++.+.++|.++++|+
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~-~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE-Q--TVESLAAAVERFEKNE 327 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC-C--CHHHHHHHHHHHHhCc
Confidence 3 45789999999999986543 22334 55567877763 3 7888999999999887
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.43 E-value=0.063 Score=51.59 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=46.7
Q ss_pred HHHHhCCCCCcceeecc---C-CchhHHHhhcCCcEEecccccchhhHHHHHHh---HhceEEEecccccCCHhHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTHS---G-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYK---ERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~---~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
...+|..+++ +|+-. | ..++.||+++|+|.|+.-..+.- ...+ + .-..|...+ +++++.++|
T Consensus 318 l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~~-----d~~~la~ai 386 (419)
T cd03806 318 LLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLAS-----TAEEYAEAI 386 (419)
T ss_pred HHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEeC-----CHHHHHHHH
Confidence 4467888887 55421 2 24789999999999986543311 1112 2 335666543 889999999
Q ss_pred HHHHcCCh
Q 037221 288 RELLEGEK 295 (342)
Q Consensus 288 ~~ll~~~~ 295 (342)
.++++++.
T Consensus 387 ~~ll~~~~ 394 (419)
T cd03806 387 EKILSLSE 394 (419)
T ss_pred HHHHhCCH
Confidence 99998764
No 99
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.40 E-value=0.045 Score=52.36 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=51.2
Q ss_pred HHhCCCCCcceeeccC----CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHc
Q 037221 217 EVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 217 ~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~ 292 (342)
.++..+++.+||...- .++++||+++|+|+|+....+ ....+ ++.+.|..++... +++++.++|.++++
T Consensus 304 ~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i-~~~~~G~l~~~~~--~~~~la~~I~~ll~ 376 (407)
T cd04946 304 KLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIV-DNGGNGLLLSKDP--TPNELVSSLSKFID 376 (407)
T ss_pred HHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHh-cCCCcEEEeCCCC--CHHHHHHHHHHHHh
Confidence 4555444434765443 457999999999999865433 44555 5545888776544 78999999999998
Q ss_pred CCh
Q 037221 293 GEK 295 (342)
Q Consensus 293 ~~~ 295 (342)
|+.
T Consensus 377 ~~~ 379 (407)
T cd04946 377 NEE 379 (407)
T ss_pred CHH
Confidence 776
No 100
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.40 E-value=0.014 Score=54.76 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred CHHHHhCCCCCcceeec--cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH--SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
....++..+++-.+.++ |...+++||+++|+|+|+..... .+...+ +.-..|..++. - +.+++.++|.+++
T Consensus 271 ~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~-~--d~~~la~~i~~ll 343 (372)
T cd04949 271 DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK-G--DIEALAEAIIELL 343 (372)
T ss_pred CHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC-C--cHHHHHHHHHHHH
Confidence 45567888888333333 33558999999999999875431 123344 55567777663 3 8899999999999
Q ss_pred cCCh-HHHHHHHHHHHHH
Q 037221 292 EGEK-GKQMRNKASEWKK 308 (342)
Q Consensus 292 ~~~~-~~~~r~~a~~l~~ 308 (342)
.|++ -+++.+++.+.++
T Consensus 344 ~~~~~~~~~~~~a~~~~~ 361 (372)
T cd04949 344 NDPKLLQKFSEAAYENAE 361 (372)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 9875 1335555554433
No 101
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.40 E-value=0.17 Score=52.01 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=37.4
Q ss_pred CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 233 WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 233 ~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
..+++||+++|+|+|+.-..+ ....+ ++-..|..++. - +++++.++|.+++
T Consensus 657 GLvvLEAMAcGlPVVAT~~GG----~~EiV-~dg~tGfLVdp-~--D~eaLA~aL~~ll 707 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRFGG----PLEII-QDGVSGFHIDP-Y--HGEEAAEKIVDFF 707 (784)
T ss_pred CHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEeCC-C--CHHHHHHHHHHHH
Confidence 348899999999999865543 44445 55456777763 3 7888999988876
No 102
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.39 E-value=0.049 Score=51.83 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=50.5
Q ss_pred CHHHHhCCCCCccee--ec--cCC-chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFL--TH--SGW-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVR 288 (342)
Q Consensus 214 pq~~lL~~~~~~~~I--tH--gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~ 288 (342)
....++..+++ || ++ .|. +.+.||+++|+|+|+.+...+.. . ...|.|..+. . +++++.++|.
T Consensus 290 ~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--~--~~~~la~ai~ 357 (397)
T TIGR03087 290 DVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--A--DPADFAAAIL 357 (397)
T ss_pred CHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC--C--CHHHHHHHHH
Confidence 45667888888 65 32 344 36999999999999987643221 1 2346676664 4 8999999999
Q ss_pred HHHcCCh
Q 037221 289 ELLEGEK 295 (342)
Q Consensus 289 ~ll~~~~ 295 (342)
++++|+.
T Consensus 358 ~ll~~~~ 364 (397)
T TIGR03087 358 ALLANPA 364 (397)
T ss_pred HHHcCHH
Confidence 9999876
No 103
>PLN00142 sucrose synthase
Probab=97.38 E-value=0.046 Score=56.20 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=40.7
Q ss_pred eeec---cCCc-hhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH----HcCCh
Q 037221 227 FLTH---SGWG-STIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL----LEGEK 295 (342)
Q Consensus 227 ~ItH---gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l----l~~~~ 295 (342)
||.- =|.| +++||+++|+|+|+....+ ....+ ++-..|..++. - +++++.++|.++ +.|+.
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV~P-~--D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHIDP-Y--HGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEeCC-C--CHHHHHHHHHHHHHHhcCCHH
Confidence 6643 3444 8999999999999875543 34444 55456877763 3 677777777654 45665
No 104
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.38 E-value=0.03 Score=55.09 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=58.1
Q ss_pred CHHHHhCCCCCcceeec---cC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc---ccc-CC-HhHHH
Q 037221 214 PQEEVLNHPSIGGFLTH---SG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING---DED-GI-RNVIQ 284 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~---~~~-~~-~~~l~ 284 (342)
+...++..+++ ||.- =| ..+++||+++|+|+|+....+ .+...+ +.-..|..++. .-| .+ .+.++
T Consensus 385 ~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~d~~~~~~~la 458 (500)
T TIGR02918 385 NLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEEDDEDQIITALA 458 (500)
T ss_pred CHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCccccchhHHHHHHH
Confidence 66788888888 6642 23 458899999999999976531 123334 44445666651 110 02 78899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHH
Q 037221 285 KSVRELLEGEKGKQMRNKASEWKKLVV 311 (342)
Q Consensus 285 ~~i~~ll~~~~~~~~r~~a~~l~~~~~ 311 (342)
++|.++++++.-++|.+++.+.++.+.
T Consensus 459 ~~I~~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 459 EKIVEYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 999999964443456666666544433
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.38 E-value=0.087 Score=53.74 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=53.2
Q ss_pred CHHHHhCCCCCcceee---ccC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLT---HSG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVR 288 (342)
Q Consensus 214 pq~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~ 288 (342)
....+|..+++ ||. +.| .++++||+++|+|+|+....+ ....+ ++-..|+.++. +. +++++.+++.
T Consensus 584 dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV-~dg~~GlLv~~~d~--~~~~La~aL~ 654 (694)
T PRK15179 584 RVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAV-QEGVTGLTLPADTV--TAPDVAEALA 654 (694)
T ss_pred hHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHc-cCCCCEEEeCCCCC--ChHHHHHHHH
Confidence 35567888888 654 344 568899999999999976532 34445 55456877764 44 6667777777
Q ss_pred HHHcCChH-HHHHHHHHH
Q 037221 289 ELLEGEKG-KQMRNKASE 305 (342)
Q Consensus 289 ~ll~~~~~-~~~r~~a~~ 305 (342)
+++.+... ..+++++++
T Consensus 655 ~ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 655 RIHDMCAADPGIARKAAD 672 (694)
T ss_pred HHHhChhccHHHHHHHHH
Confidence 76653210 126555544
No 106
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.25 E-value=0.084 Score=51.62 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=50.9
Q ss_pred CHHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHh------ceEEEecccccCCHhHH
Q 037221 214 PQEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKER------GIGMEINGDEDGIRNVI 283 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~------G~G~~l~~~~~~~~~~l 283 (342)
...+++..+++ +|.- |--++++||+++|+|+|+... ......+ ++. ..|..++. . +++++
T Consensus 363 ~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv~~-~--d~~~l 432 (475)
T cd03813 363 NVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVVPP-A--DPEAL 432 (475)
T ss_pred cHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEECC-C--CHHHH
Confidence 45667888887 5533 335689999999999998543 3333444 442 26766653 3 88999
Q ss_pred HHHHHHHHcCCh
Q 037221 284 QKSVRELLEGEK 295 (342)
Q Consensus 284 ~~~i~~ll~~~~ 295 (342)
.++|.++++|+.
T Consensus 433 a~ai~~ll~~~~ 444 (475)
T cd03813 433 ARAILRLLKDPE 444 (475)
T ss_pred HHHHHHHhcCHH
Confidence 999999999876
No 107
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.20 E-value=0.13 Score=49.43 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEE-ecc-cccCCHhHHHHHHHHHHcCC
Q 037221 217 EVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGME-ING-DEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 217 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~-l~~-~~~~~~~~l~~~i~~ll~~~ 294 (342)
.+++++++ +|.. =.-++.-|+..|||.+.++. | +-....+ +.+|..-. .+. ++ +.+++.+.+.++++|.
T Consensus 323 ~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~l--~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 323 KILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRHL--LDGSLQAMVADTLGQL 393 (426)
T ss_pred HHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhhC--CHHHHHHHHHHHHhCH
Confidence 55666664 4442 34567778899999999988 2 3333445 67777744 443 67 8899999999999987
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 295 KGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 295 ~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
+ +++++.++--+.+++ .+.+...++++.+-
T Consensus 394 ~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 394 P--ALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred H--HHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 6 466665555555553 12255666666543
No 108
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.17 E-value=0.075 Score=51.83 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=46.0
Q ss_pred HHhCCCCCcceeec---cCCc-hhHHHhhcCCcEEeccccc--chhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 217 EVLNHPSIGGFLTH---SGWG-STIENLSAGVPMICWPFEG--DQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 217 ~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
.++..+++ ||.- -|.| +.+||+++|+|.|+....+ |.-.+...- .+.+.|..++. - +++++.+++.++
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~-~--d~~~la~~i~~~ 425 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD-F--NAEDLLRALRRA 425 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC-C--CHHHHHHHHHHH
Confidence 57888888 6643 2444 8889999999999865432 321111111 12267777763 3 889999999998
Q ss_pred Hc
Q 037221 291 LE 292 (342)
Q Consensus 291 l~ 292 (342)
+.
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 76
No 109
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.16 E-value=0.0036 Score=60.19 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-------------------------CHH---HHhCC
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-------------------------PQE---EVLNH 221 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-------------------------pq~---~lL~~ 221 (342)
++..++|.+|.+.....++.+....+-|++.+...+|....... +.. ..+..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 35578999999998889999999999999999989998754332 333 34455
Q ss_pred CCCccee---eccCCchhHHHhhcCCcEEeccccc-chhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 222 PSIGGFL---THSGWGSTIENLSAGVPMICWPFEG-DQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 222 ~~~~~~I---tHgG~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+|+ ++ ..+|.+|++|||.+|||+|.+|--. =...-+..+ ..+|+.-.+- - +.++..+..-++-+|.+
T Consensus 362 ~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA--~--s~~eYv~~Av~La~D~~ 432 (468)
T PF13844_consen 362 ADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA--D--SEEEYVEIAVRLATDPE 432 (468)
T ss_dssp -SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---S--SHHHHHHHHHHHHH-HH
T ss_pred CCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC--C--CHHHHHHHHHHHhCCHH
Confidence 665 54 4678999999999999999999533 223334445 6777764333 2 56665555556666765
No 110
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.96 E-value=0.03 Score=53.04 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=52.2
Q ss_pred HHHHhCCCCCcceeecc----CC-chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTHS----GW-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHg----G~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
...++..+++ ||... |. .+++||+++|+|+|+....+ +...+ ++-..|..+.... +++++.++|.+
T Consensus 270 l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~~~~--d~~~la~~I~~ 340 (380)
T PRK15484 270 MHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLAEPM--TSDSIISDINR 340 (380)
T ss_pred HHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEeCCC--CHHHHHHHHHH
Confidence 4567888998 66533 32 57789999999999976532 33445 5555676554335 89999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
+++|++
T Consensus 341 ll~d~~ 346 (380)
T PRK15484 341 TLADPE 346 (380)
T ss_pred HHcCHH
Confidence 999886
No 111
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.95 E-value=0.033 Score=52.44 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred HHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEeccc-c--cCCHhHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGD-E--DGIRNVIQKSV 287 (342)
Q Consensus 215 q~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~-~--~~~~~~l~~~i 287 (342)
...++..+++ ||.- +...+++||+++|+|+|+.... .....+ +.-+.|..++.. . ++..+.+.++|
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~~~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPPDNSDADGFQAELAKAI 346 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCCCCCcccchHHHHHHHH
Confidence 4557888887 6642 2245779999999999987653 344555 565678777631 1 00128999999
Q ss_pred HHHHcCCh
Q 037221 288 RELLEGEK 295 (342)
Q Consensus 288 ~~ll~~~~ 295 (342)
.++++|+.
T Consensus 347 ~~l~~~~~ 354 (388)
T TIGR02149 347 NILLADPE 354 (388)
T ss_pred HHHHhCHH
Confidence 99998876
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.90 E-value=0.011 Score=48.86 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=54.2
Q ss_pred CHHHHhCCCCCcceeec----cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ +|+. +...++.||+++|+|+|+.. ...+...+ .+.+.|..++. . +.+++.++|.+
T Consensus 85 ~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~~-~--~~~~l~~~i~~ 154 (172)
T PF00534_consen 85 ELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFDP-N--DIEELADAIEK 154 (172)
T ss_dssp HHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEEST-T--SHHHHHHHHHH
T ss_pred cccccccccee--ccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeCC-C--CHHHHHHHHHH
Confidence 35678888888 7766 56679999999999999754 44555666 67677888873 3 78999999999
Q ss_pred HHcCCh
Q 037221 290 LLEGEK 295 (342)
Q Consensus 290 ll~~~~ 295 (342)
++++++
T Consensus 155 ~l~~~~ 160 (172)
T PF00534_consen 155 LLNDPE 160 (172)
T ss_dssp HHHHHH
T ss_pred HHCCHH
Confidence 999875
No 113
>PLN02275 transferase, transferring glycosyl groups
Probab=96.70 E-value=0.066 Score=50.50 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=46.1
Q ss_pred HHHhCCCCCcceee-c-----cC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHH
Q 037221 216 EEVLNHPSIGGFLT-H-----SG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVR 288 (342)
Q Consensus 216 ~~lL~~~~~~~~It-H-----gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~ 288 (342)
..+|+.+|+ ||. + -| -+++.||+++|+|+|+.... .+...+ ++-+.|..++ +++++.++|.
T Consensus 301 ~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~-----~~~~la~~i~ 368 (371)
T PLN02275 301 PLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS-----SSSELADQLL 368 (371)
T ss_pred HHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC-----CHHHHHHHHH
Confidence 456889998 663 1 12 34799999999999997542 255555 6667888875 6788888888
Q ss_pred HHH
Q 037221 289 ELL 291 (342)
Q Consensus 289 ~ll 291 (342)
+++
T Consensus 369 ~l~ 371 (371)
T PLN02275 369 ELL 371 (371)
T ss_pred HhC
Confidence 764
No 114
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.58 E-value=0.54 Score=46.56 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=43.1
Q ss_pred CHHHHhCCCCCcceeec---cC-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH---SG-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
....+|..+++ ||.. -| .+++.||+++|+|+|+.... .+...+ ++-..|..++. - +.+.+.+++
T Consensus 465 Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp~-~--D~~aLa~ai 532 (578)
T PRK15490 465 DVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILDD-A--QTVNLDQAC 532 (578)
T ss_pred hHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEECC-C--ChhhHHHHH
Confidence 45567888998 7753 34 55899999999999987653 344555 56567877763 2 444454444
No 115
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.57 E-value=0.098 Score=48.11 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhh---HHHHHH
Q 037221 187 KQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMT---NCRYTY 263 (342)
Q Consensus 187 ~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~---na~~~~ 263 (342)
.+....+.+.++..+.-.+|.-.+.+ |+...|+.++. .|||-=..+++.||+..|+|+.++|.-.-... -.+.+
T Consensus 195 ~~~~~~L~~~~~~~~~~~~~~~~~~n-Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L- 271 (311)
T PF06258_consen 195 PEAEAALRELLKDNPGVYIWDGTGEN-PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL- 271 (311)
T ss_pred HHHHHHHHHhhcCCCceEEecCCCCC-cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH-
Confidence 33344444444434433356222222 99999999997 45555557788899999999999988761111 23344
Q ss_pred hHhceEEEecc
Q 037221 264 KERGIGMEING 274 (342)
Q Consensus 264 ~~~G~G~~l~~ 274 (342)
++.|.-..++.
T Consensus 272 ~~~g~~r~~~~ 282 (311)
T PF06258_consen 272 EERGAVRPFTG 282 (311)
T ss_pred HHCCCEEECCC
Confidence 55677777664
No 116
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.56 E-value=0.075 Score=50.87 Aligned_cols=70 Identities=13% Similarity=0.275 Sum_probs=50.6
Q ss_pred HHHhCCCCCcceeec---------cCC-chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHH
Q 037221 216 EEVLNHPSIGGFLTH---------SGW-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQK 285 (342)
Q Consensus 216 ~~lL~~~~~~~~ItH---------gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~ 285 (342)
.+++..+++ ||.- =|. ++++||+++|+|+|+....+ ....+ ++-..|..++. - +++++.+
T Consensus 293 ~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~lv~~-~--d~~~la~ 362 (406)
T PRK15427 293 KAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGWLVPE-N--DAQALAQ 362 (406)
T ss_pred HHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceEEeCC-C--CHHHHHH
Confidence 457888888 6642 243 56899999999999976543 33344 55457777663 3 8899999
Q ss_pred HHHHHHc-CCh
Q 037221 286 SVRELLE-GEK 295 (342)
Q Consensus 286 ~i~~ll~-~~~ 295 (342)
+|.++++ |++
T Consensus 363 ai~~l~~~d~~ 373 (406)
T PRK15427 363 RLAAFSQLDTD 373 (406)
T ss_pred HHHHHHhCCHH
Confidence 9999998 765
No 117
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.43 E-value=0.44 Score=44.93 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHhCCCCCccee------eccCC-chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 215 QEEVLNHPSIGGFL------THSGW-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 215 q~~lL~~~~~~~~I------tHgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
....+.++++..+- +.++. +.+.|++++|+|+|+.++ .... +..+.+.... - +++++.++|
T Consensus 267 l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~~--~--d~~~~~~ai 334 (373)
T cd04950 267 LPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLIA--D--DPEEFVAAI 334 (373)
T ss_pred HHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEeC--C--CHHHHHHHH
Confidence 33467788872221 22332 458999999999998763 1222 3333233333 2 799999999
Q ss_pred HHHHcCCh
Q 037221 288 RELLEGEK 295 (342)
Q Consensus 288 ~~ll~~~~ 295 (342)
.+++.++.
T Consensus 335 ~~~l~~~~ 342 (373)
T cd04950 335 EKALLEDG 342 (373)
T ss_pred HHHHhcCC
Confidence 99776543
No 118
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.42 E-value=0.013 Score=54.41 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=59.9
Q ss_pred hHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcC
Q 037221 236 TIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAA 315 (342)
Q Consensus 236 ~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~ 315 (342)
+.+.+++|+|+|+.+ ....+..+ ++.++|+.++ +.+++.+++.++. ++..++|++|++++++.++.
T Consensus 253 ~~~ymA~G~PVI~~~----~~~~~~~V-~~~~~G~~v~-----~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~--- 318 (333)
T PRK09814 253 LSLYLAAGLPVIVWS----KAAIADFI-VENGLGFVVD-----SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN--- 318 (333)
T ss_pred HHHHHHCCCCEEECC----CccHHHHH-HhCCceEEeC-----CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc---
Confidence 677899999999864 45677777 8999999987 6678888888753 34455799999999999996
Q ss_pred CCCchHHHHHHHHH
Q 037221 316 PDGPSSKNLVKLVN 329 (342)
Q Consensus 316 ~~g~~~~~~~~~i~ 329 (342)
|.--.+++.+++.
T Consensus 319 -g~~~~~~~~~~~~ 331 (333)
T PRK09814 319 -GYFTKKALVDAIK 331 (333)
T ss_pred -chhHHHHHHHHHh
Confidence 5554455554443
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.36 E-value=0.08 Score=45.09 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHhCCCCCcceeeccC----CchhHHHhhcCCcEEeccccc
Q 037221 215 QEEVLNHPSIGGFLTHSG----WGSTIENLSAGVPMICWPFEG 253 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~i~~P~~~ 253 (342)
...++..+++ +++-.. .++++||+.+|+|+|+.+..+
T Consensus 175 ~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 175 LALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred HHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4445555887 777776 789999999999999988754
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.23 E-value=0.61 Score=47.28 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHhCCCCCcceeecc---C-CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTHS---G-WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 215 q~~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
...++..+++ ||.-. | ..+++||+++|+|+|+....+... + ...+-|... - +.+++.++|.++
T Consensus 612 ~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~g~nGll~---~--D~EafAeAI~~L 678 (794)
T PLN02501 612 ADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RSFPNCLTY---K--TSEDFVAKVKEA 678 (794)
T ss_pred HHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-eecCCeEec---C--CHHHHHHHHHHH
Confidence 3468888887 76532 2 457889999999999987654321 2 222333322 2 889999999999
Q ss_pred HcCCh
Q 037221 291 LEGEK 295 (342)
Q Consensus 291 l~~~~ 295 (342)
+.++.
T Consensus 679 Lsd~~ 683 (794)
T PLN02501 679 LANEP 683 (794)
T ss_pred HhCch
Confidence 99875
No 121
>PLN02316 synthase/transferase
Probab=96.14 E-value=1.3 Score=47.13 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=46.5
Q ss_pred HHhCCCCCcceeec----cCCchhHHHhhcCCcEEeccccc--chhhHH-------HHHHhHhceEEEecccccCCHhHH
Q 037221 217 EVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEG--DQMTNC-------RYTYKERGIGMEINGDEDGIRNVI 283 (342)
Q Consensus 217 ~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~--DQ~~na-------~~~~~~~G~G~~l~~~~~~~~~~l 283 (342)
.+++.+++ |+.- +=..+.+||+++|+|.|+....+ |..... ... ..-+.|...+. . +++.+
T Consensus 915 ~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~-g~~~tGflf~~-~--d~~aL 988 (1036)
T PLN02316 915 LIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQ-GLEPNGFSFDG-A--DAAGV 988 (1036)
T ss_pred HHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccc-ccCCceEEeCC-C--CHHHH
Confidence 68888998 7743 22458899999999888765533 322211 100 01246777663 3 78899
Q ss_pred HHHHHHHHcC
Q 037221 284 QKSVRELLEG 293 (342)
Q Consensus 284 ~~~i~~ll~~ 293 (342)
..+|.+++.+
T Consensus 989 a~AL~raL~~ 998 (1036)
T PLN02316 989 DYALNRAISA 998 (1036)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 122
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.80 E-value=1.4 Score=39.94 Aligned_cols=219 Identities=15% Similarity=0.060 Sum_probs=108.4
Q ss_pred hhcchhhccCCCeEEEEeCCC--CCCC-CcccCCC-C---Cc--chh----hh---HHHHHHHHHHHhhCCCCCCccEEE
Q 037221 3 QLAKLPHHHKGFHITFVNFEN--KKNM-ASQALDL-K---HS--RIV----FY---IDHNRAFILFVNQNGNQPAVSCII 66 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~--~~~~-~~~~~~~-p---~~--~~~----~~---~~~~~~li~~~~~~~~~~~pD~vI 66 (342)
.+-+.| .++||+|.+.+-.. ...+ ..-+++. + .+ ++. .. .-.+.+++. +++||+.+
T Consensus 18 ~lI~el-ekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~-------~~kpdv~i 89 (346)
T COG1817 18 NLIWEL-EKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIA-------EFKPDVAI 89 (346)
T ss_pred HHHHHH-HhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHh-------hcCCceEe
Confidence 456788 89999998766543 2222 3223322 1 11 121 11 112233333 36999999
Q ss_pred ECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCC-ceeecc
Q 037221 67 SDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFP-NLFTIG 145 (342)
Q Consensus 67 ~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p-~~~~vG 145 (342)
. -+.+.+..+|-.+|+|.+.+.-..-.-.. +.+....++.++.+....-+.- .+ ...-| ++...-
T Consensus 90 ~-~~s~~l~rvafgLg~psIi~~D~ehA~~q----------nkl~~Pla~~ii~P~~~~~~~~-~~--~G~~p~~i~~~~ 155 (346)
T COG1817 90 G-KHSPELPRVAFGLGIPSIIFVDNEHAEAQ----------NKLTLPLADVIITPEAIDEEEL-LD--FGADPNKISGYN 155 (346)
T ss_pred e-cCCcchhhHHhhcCCceEEecCChhHHHH----------hhcchhhhhheecccccchHHH-HH--hCCCccceeccc
Confidence 9 56889999999999999998654422211 1111233444444332111110 00 01112 122111
Q ss_pred ccccccccccccchhHHHHHHhcCCCCceEEEEecccc------cCCHHHHHHHHHHHhcCCCCEEEEECCC--------
Q 037221 146 PLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAI------VVKKQQFIEVAMGLANSNHPFLWIIRPD-------- 211 (342)
Q Consensus 146 pl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~------~~~~~~~~~~~~al~~~~~~~iw~~~~~-------- 211 (342)
++.-.........+++..+-|.-....+.|..-+=+.. ....+....+++.|+..+ +..+...
T Consensus 156 giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~~~eife 232 (346)
T COG1817 156 GIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLIPREKEQAEIFE 232 (346)
T ss_pred ceeEEeecccCCCCHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc---EEEecCchhHHHHHh
Confidence 11110000101224445555554444456665554422 112334566777777776 2222111
Q ss_pred ---------CC-CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEec
Q 037221 212 ---------LF-PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 212 ---------~~-pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
.. +..++|-.+++ +|+ +|...-.||+..|+|.|.+
T Consensus 233 ~~~n~i~pk~~vD~l~Llyya~l--vig-~ggTMarEaAlLGtpaIs~ 277 (346)
T COG1817 233 GYRNIIIPKKAVDTLSLLYYATL--VIG-AGGTMAREAALLGTPAISC 277 (346)
T ss_pred hhccccCCcccccHHHHHhhhhe--eec-CCchHHHHHHHhCCceEEe
Confidence 00 45557878885 665 4445566999999999854
No 123
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.19 Score=49.04 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC------------------------------CHHHHh
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF------------------------------PQEEVL 219 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------------------------------pq~~lL 219 (342)
+++-+||+||+......++.+..-+.-|+..+..++|....... .+.+=+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 56679999999999999999999999999999999998865211 233344
Q ss_pred CCCCCcceee---ccCCchhHHHhhcCCcEEecccccchhh--HHHHHHhHhceEEEecccccCCHhHHHHHHH
Q 037221 220 NHPSIGGFLT---HSGWGSTIENLSAGVPMICWPFEGDQMT--NCRYTYKERGIGMEINGDEDGIRNVIQKSVR 288 (342)
Q Consensus 220 ~~~~~~~~It---HgG~~s~~eal~~GvP~i~~P~~~DQ~~--na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~ 288 (342)
..+|+ |+. -||..|..|+|..|||+|..+ ++||. |+..++...|+--.+-. - ..+=|+++++
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-s--~~dYV~~av~ 573 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-S--RADYVEKAVA 573 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-C--HHHHHHHHHH
Confidence 55665 664 699999999999999999875 67765 55555455555433331 1 3444666664
No 124
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.70 E-value=0.13 Score=37.75 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=53.6
Q ss_pred ccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhc-eEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 037221 230 HSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERG-IGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKK 308 (342)
Q Consensus 230 HgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G-~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~ 308 (342)
+|-..-+.|++++|+|+|+-+. ......+ ++ | -++..+ +++++.+++..+++|+. ..++-+++-.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~~-----~~~el~~~i~~ll~~~~--~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITYN-----DPEELAEKIEYLLENPE--ERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEEC-----CHHHHHHHHHHHHCCHH--HHHHHHHHHHH
Confidence 4556688999999999998765 2233333 22 4 344444 88999999999999987 34444455445
Q ss_pred HHHHHcCCCCchHHHHHHHH
Q 037221 309 LVVEAAAPDGPSSKNLVKLV 328 (342)
Q Consensus 309 ~~~~a~~~~g~~~~~~~~~i 328 (342)
.+.+ ..+..+.+++|+
T Consensus 76 ~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHH----hCCHHHHHHHHH
Confidence 5554 455555555554
No 125
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.67 E-value=0.076 Score=52.11 Aligned_cols=103 Identities=21% Similarity=0.283 Sum_probs=72.7
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC------------------------------CHHHHh
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF------------------------------PQEEVL 219 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------------------------------pq~~lL 219 (342)
++..+||.+|--.....++.++..++-|++.+..++|..+.+.. =+...|
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~L 835 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQL 835 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhh
Confidence 45568999998888889999999999999999999999854321 111122
Q ss_pred CCCCCcceeeccCCchhHHHhhcCCcEEecccccc-hhhHHHHHHhHhceEEEecc
Q 037221 220 NHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGD-QMTNCRYTYKERGIGMEING 274 (342)
Q Consensus 220 ~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~D-Q~~na~~~~~~~G~G~~l~~ 274 (342)
..-.+.-+.+. |..|.++.|..|+|||.+|.-.- ...-+-.+ ...|+|-.+.+
T Consensus 836 aDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hliak 889 (966)
T KOG4626|consen 836 ADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIAK 889 (966)
T ss_pred hhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHhh
Confidence 22222235554 78899999999999999997543 23333444 67888875554
No 126
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.28 E-value=0.0089 Score=44.84 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=43.7
Q ss_pred chhHHHHHHhcCCCCceEEEEecccccC---CH--HHHHHHHHHHhcCCCCEEEEECCC
Q 037221 158 KETECLRWLDSKLPNSVIYVNFGIAIVV---KK--QQFIEVAMGLANSNHPFLWIIRPD 211 (342)
Q Consensus 158 ~~~~~~~~l~~~~~~~~V~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~iw~~~~~ 211 (342)
....+..|+...+.++.|+||+||.... .. ..+..++++++..+..++......
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 3444567998888999999999998743 22 478889999999999999988654
No 127
>PLN02949 transferase, transferring glycosyl groups
Probab=95.08 E-value=3.7 Score=40.10 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHHhCCCCCcceee---ccCCc-hhHHHhhcCCcEEecccccchhhHHHHHHhHh--c-eEEEecccccCCHhHHHHHH
Q 037221 215 QEEVLNHPSIGGFLT---HSGWG-STIENLSAGVPMICWPFEGDQMTNCRYTYKER--G-IGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 215 q~~lL~~~~~~~~It---HgG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~--G-~G~~l~~~~~~~~~~l~~~i 287 (342)
...+|..+++ +|+ +=|.| ++.||+++|+|.|+....+-- ...+ .+. | .|... - +++++.++|
T Consensus 348 l~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV-~~~~~g~tG~l~---~--~~~~la~ai 416 (463)
T PLN02949 348 LVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIV-LDEDGQQTGFLA---T--TVEEYADAI 416 (463)
T ss_pred HHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceee-ecCCCCcccccC---C--CHHHHHHHH
Confidence 4457888887 663 22333 799999999999998654310 0001 110 1 23332 2 789999999
Q ss_pred HHHHcCC-h-HHHHHHHHHHH
Q 037221 288 RELLEGE-K-GKQMRNKASEW 306 (342)
Q Consensus 288 ~~ll~~~-~-~~~~r~~a~~l 306 (342)
.++++++ . -+++.+++++.
T Consensus 417 ~~ll~~~~~~r~~m~~~ar~~ 437 (463)
T PLN02949 417 LEVLRMRETERLEIAAAARKR 437 (463)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 9999854 3 12355555443
No 128
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.77 E-value=2.1 Score=38.03 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=37.2
Q ss_pred CHHHHhCCCCCcceeeccC-CchhHHHhhcCCcEEe--cccc-cchhh-HHHHHHhHhceEEEec
Q 037221 214 PQEEVLNHPSIGGFLTHSG-WGSTIENLSAGVPMIC--WPFE-GDQMT-NCRYTYKERGIGMEIN 273 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG-~~s~~eal~~GvP~i~--~P~~-~DQ~~-na~~~~~~~G~G~~l~ 273 (342)
|+.++|+.++. +|.-.. .+...||++.|+|+.+ .|.+ .+.+. .-..+ .+.++++..+
T Consensus 237 PY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L-~eq~~AR~f~ 298 (329)
T COG3660 237 PYIDMLAAADY--IISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQL-VEQKIARPFE 298 (329)
T ss_pred chHHHHhhcce--EEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHH-HHhhhccccC
Confidence 99999999987 666555 6778899999999864 4444 22222 22334 3455555443
No 129
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.12 E-value=0.53 Score=45.86 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHhCCCCCcceeec---cCC-chhHHHhhcCCcEEeccccc--chhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTH---SGW-GSTIENLSAGVPMICWPFEG--DQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 216 ~~lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
..++..+++ ++.- -|. .+.+||+++|+|.|+....+ |--.+...- .+.|.|..++. - +++++.+++.+
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~-~--~~~~l~~~i~~ 438 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG-Y--NADALLAALRR 438 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC-C--CHHHHHHHHHH
Confidence 357788887 6632 122 47789999999999876543 322221111 23457887763 3 78999999999
Q ss_pred HHcC
Q 037221 290 LLEG 293 (342)
Q Consensus 290 ll~~ 293 (342)
+++.
T Consensus 439 ~l~~ 442 (476)
T cd03791 439 ALAL 442 (476)
T ss_pred HHHH
Confidence 8753
No 130
>PHA01630 putative group 1 glycosyl transferase
Probab=93.99 E-value=0.77 Score=42.67 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=57.5
Q ss_pred HHHHhCCCCCcceee---ccC-CchhHHHhhcCCcEEeccccc--chhh---HHHHHHhH-----------hceEEEecc
Q 037221 215 QEEVLNHPSIGGFLT---HSG-WGSTIENLSAGVPMICWPFEG--DQMT---NCRYTYKE-----------RGIGMEING 274 (342)
Q Consensus 215 q~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~i~~P~~~--DQ~~---na~~~~~~-----------~G~G~~l~~ 274 (342)
...++..+++ |+. ..| ..++.||+++|+|+|+.-..+ |... |.-.+ +. .++|..++
T Consensus 203 l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~G~~v~- 278 (331)
T PHA01630 203 IYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHVGYFLD- 278 (331)
T ss_pred HHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcccccccC-
Confidence 3446888888 652 222 458899999999999976543 3221 11111 00 23455444
Q ss_pred cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037221 275 DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNE 330 (342)
Q Consensus 275 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~ 330 (342)
. +.+++.+++.+++.|.+-++++++...-+...++ ..+-.+.++++.+-
T Consensus 279 -~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l 327 (331)
T PHA01630 279 -P--DIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKI 327 (331)
T ss_pred -C--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 3 6677778888888774111255544444444443 34444444444443
No 131
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=93.49 E-value=0.074 Score=41.93 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=41.4
Q ss_pred HHHHhCCCCCcceeec---cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTH---SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 215 q~~lL~~~~~~~~ItH---gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
..+++..+++....+. +-.+++.|++++|+|+|+.+.. ..... +..+.|..+. - +++++.++|.+++
T Consensus 64 ~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~~--~--~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 64 LPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLVA--N--DPEELAEAIERLL 133 (135)
T ss_dssp HHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T--T---HHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEEC--C--CHHHHHHHHHHHh
Confidence 5566777777433332 2347899999999999998761 22233 4467887774 3 8999999999998
Q ss_pred cC
Q 037221 292 EG 293 (342)
Q Consensus 292 ~~ 293 (342)
+|
T Consensus 134 ~d 135 (135)
T PF13692_consen 134 ND 135 (135)
T ss_dssp H-
T ss_pred cC
Confidence 75
No 132
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=93.48 E-value=4.5 Score=35.71 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=47.0
Q ss_pred hhcchhhccCCCeEEEEeCCC--CCCCC---cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEE--ECCCcc---
Q 037221 3 QLAKLPHHHKGFHITFVNFEN--KKNMA---SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCII--SDGFMP--- 72 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~--~~~~~---~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI--~D~~~~--- 72 (342)
+|++.| ...++.+++.+... ..... +....|+ .-.+.+.+++++. +.|+|| +++|..
T Consensus 16 ~la~~L-~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~-----l~~e~l~~~l~e~-------~i~llIDATHPyAa~iS 82 (257)
T COG2099 16 ALAKKL-AAAPVDIILSSLTGYGAKLAEQIGPVRVGGF-----LGAEGLAAFLREE-------GIDLLIDATHPYAARIS 82 (257)
T ss_pred HHHHHh-hccCccEEEEEcccccccchhccCCeeecCc-----CCHHHHHHHHHHc-------CCCEEEECCChHHHHHH
Confidence 678889 88887777776554 33222 1111101 3466777888874 789888 333332
Q ss_pred -hHHHHHHHhCCceEEEe
Q 037221 73 -FTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 73 -~~~~~A~~lgiP~v~~~ 89 (342)
-+..+|+..|||++.|.
T Consensus 83 ~Na~~aake~gipy~r~e 100 (257)
T COG2099 83 QNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHhCCcEEEEE
Confidence 34668899999999874
No 133
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.13 E-value=5.2 Score=38.96 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=65.6
Q ss_pred CHHHHhCCCCCcceeec---cCCc-hhHHHhhcCCc----EEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH---SGWG-STIENLSAGVP----MICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQK 285 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP----~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~ 285 (342)
....++..+++ |+.- =|+| ++.|++++|+| +|+--..+- +..+ +-|+.++. - +++.+.+
T Consensus 348 el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVnP-~--d~~~lA~ 414 (456)
T TIGR02400 348 ELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVNP-Y--DIDGMAD 414 (456)
T ss_pred HHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEECC-C--CHHHHHH
Confidence 34556888888 6653 3644 77799999999 666554432 2223 34556553 4 8899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 286 SVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 286 ~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
+|.++++++.. +.+++.+++.+.+.. .+...-+.++++.|.
T Consensus 415 aI~~aL~~~~~-er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 415 AIARALTMPLE-EREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 99999986631 355566666666554 555666777777663
No 134
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=92.83 E-value=2.2 Score=41.65 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=46.3
Q ss_pred HHHhCCCCCcceeecc---CCc-hhHHHhhcCCcEEecccccchhhHHHHHHhHh------ceEEEecccccCCHhHHHH
Q 037221 216 EEVLNHPSIGGFLTHS---GWG-STIENLSAGVPMICWPFEGDQMTNCRYTYKER------GIGMEINGDEDGIRNVIQK 285 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHg---G~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~------G~G~~l~~~~~~~~~~l~~ 285 (342)
..+++.+++ ++.-. |.| +.+||+++|+|.|+....+ ....+ .+. +.|..++. - +++++.+
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~-~--d~~~la~ 429 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE-Y--DPGALLA 429 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC-C--CHHHHHH
Confidence 457888888 66432 333 7889999999999876543 11122 222 67777763 3 7889999
Q ss_pred HHHHHHc
Q 037221 286 SVRELLE 292 (342)
Q Consensus 286 ~i~~ll~ 292 (342)
+|.+++.
T Consensus 430 ~i~~~l~ 436 (473)
T TIGR02095 430 ALSRALR 436 (473)
T ss_pred HHHHHHH
Confidence 9999876
No 135
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.74 E-value=2.2 Score=38.32 Aligned_cols=80 Identities=9% Similarity=-0.079 Sum_probs=48.5
Q ss_pred hhcchhhccC--CCeEEEEeCCC-CCCC-CcccCCC--C--CcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchH
Q 037221 3 QLAKLPHHHK--GFHITFVNFEN-KKNM-ASQALDL--K--HSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFT 74 (342)
Q Consensus 3 ~la~~L~~~~--Gh~Vt~~~~~~-~~~~-~~~~~~~--p--~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~ 74 (342)
.+.+.| +++ +-+|++++.+. .+.+ ....++. + ..+.......+.+++++++. .++|+++.=......
T Consensus 18 p~l~~L-k~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~l~~----~~~D~vi~~~~~~~~ 92 (279)
T cd03789 18 PLLRAL-KARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKHGKLGLGARRRLARALRR----RRYDLAIDLQGSLRS 92 (279)
T ss_pred HHHHHH-HHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcccccchHHHHHHHHHHhh----cCCCEEEECCCccHH
Confidence 455677 664 58999999988 6655 3222222 1 11111223455677777764 589999855545555
Q ss_pred HHHHHHhCCceEE
Q 037221 75 IEAAQQLGLSVVM 87 (342)
Q Consensus 75 ~~~A~~lgiP~v~ 87 (342)
..++...+++...
T Consensus 93 ~~~~~~~~~~~~~ 105 (279)
T cd03789 93 ALLPFLAGAPRRI 105 (279)
T ss_pred HHHHHHhCCCeEE
Confidence 5567777877654
No 136
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.44 E-value=2.3 Score=35.46 Aligned_cols=77 Identities=6% Similarity=-0.039 Sum_probs=46.9
Q ss_pred cCCCeEEEEeCCC-CCCCCcc-----cC-CC--CCc-----chh---hhHHHHHHHHHHHhhCCCCCCccEEEECCCcch
Q 037221 11 HKGFHITFVNFEN-KKNMASQ-----AL-DL--KHS-----RIV---FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPF 73 (342)
Q Consensus 11 ~~Gh~Vt~~~~~~-~~~~~~~-----~~-~~--p~~-----~~~---~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~ 73 (342)
++||+|+|+|... ....+.. .. .+ |.. ++. .....+...+.+|++. +..||+||....--.
T Consensus 1 q~gh~v~fl~~~~~~~~~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~--Gf~PDvI~~H~GWGe 78 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIPPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ--GFVPDVIIAHPGWGE 78 (171)
T ss_pred CCCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHc--CCCCCEEEEcCCcch
Confidence 5899999999554 3222100 00 11 111 222 3333445555555543 689999999986657
Q ss_pred HHHHHHHh-CCceEEEe
Q 037221 74 TIEAAQQL-GLSVVMFL 89 (342)
Q Consensus 74 ~~~~A~~l-giP~v~~~ 89 (342)
+..+-..+ +.|.+.+.
T Consensus 79 ~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 79 TLFLKDVFPDAPLIGYF 95 (171)
T ss_pred hhhHHHhCCCCcEEEEE
Confidence 77788888 89988864
No 137
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=91.38 E-value=9.3 Score=33.94 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=45.6
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCCC-CcccCCCCCcchh---h-hHHHHHHHHHHHhhCCCCCCccEEE--ECCCcc--
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDLKHSRIV---F-YIDHNRAFILFVNQNGNQPAVSCII--SDGFMP-- 72 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~p~~~~~---~-~~~~~~~li~~~~~~~~~~~pD~vI--~D~~~~-- 72 (342)
.|+..| .++|+ |++-+.-+ ...+ .+.. +...+. . -...+.+++++ .++|+|| +++|+.
T Consensus 14 ~la~~L-~~~g~-v~~sv~t~~g~~~~~~~~---~~~~v~~G~lg~~~~l~~~l~~-------~~i~~vIDATHPfA~~i 81 (249)
T PF02571_consen 14 KLAERL-AEAGY-VIVSVATSYGGELLKPEL---PGLEVRVGRLGDEEGLAEFLRE-------NGIDAVIDATHPFAAEI 81 (249)
T ss_pred HHHHHH-HhcCC-EEEEEEhhhhHhhhcccc---CCceEEECCCCCHHHHHHHHHh-------CCCcEEEECCCchHHHH
Confidence 578899 99998 55444333 3333 2110 000111 2 46677777776 4789998 444433
Q ss_pred --hHHHHHHHhCCceEEEe
Q 037221 73 --FTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 73 --~~~~~A~~lgiP~v~~~ 89 (342)
-+..+|+.+|||++.+.
T Consensus 82 s~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 82 SQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHhhcCcceEEEE
Confidence 45678889999999874
No 138
>PRK14098 glycogen synthase; Provisional
Probab=91.09 E-value=2.4 Score=41.73 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=44.6
Q ss_pred HHHhCCCCCcceeecc---CC-chhHHHhhcCCcEEeccccc--chhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTHS---GW-GSTIENLSAGVPMICWPFEG--DQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHg---G~-~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
..+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |...+ .. ++-+.|...+. . +++.+.++|.+
T Consensus 376 ~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~-~--d~~~la~ai~~ 447 (489)
T PRK14098 376 HLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD-Y--TPEALVAKLGE 447 (489)
T ss_pred HHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC-C--CHHHHHHHHHH
Confidence 568888998 76533 22 37789999999888776533 32111 11 22366776653 3 88999999988
Q ss_pred HH
Q 037221 290 LL 291 (342)
Q Consensus 290 ll 291 (342)
++
T Consensus 448 ~l 449 (489)
T PRK14098 448 AL 449 (489)
T ss_pred HH
Confidence 75
No 139
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=90.99 E-value=0.87 Score=35.93 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=48.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCC---CCc---chhhh-HHHHHHHHHHHhhCCCCCCccEEEECCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDL---KHS---RIVFY-IDHNRAFILFVNQNGNQPAVSCIISDGFMP 72 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~---p~~---~~~~~-~~~~~~li~~~~~~~~~~~pD~vI~D~~~~ 72 (342)
..+++.| .++||+|++++..+ .... ....... +.+ .++.. .-.+..++++ .+||+|.+.....
T Consensus 14 ~~~~~~L-~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~-------~~~DvIh~h~~~~ 85 (139)
T PF13477_consen 14 YNLAKEL-KKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKK-------EKPDVIHCHTPSP 85 (139)
T ss_pred HHHHHHH-HHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhcc-------CCCCEEEEecCCh
Confidence 4678999 99999999999966 5333 2111111 111 11111 1133334444 5899997665443
Q ss_pred ---hHHHHHHHhC-CceEEEecch
Q 037221 73 ---FTIEAAQQLG-LSVVMFLTIS 92 (342)
Q Consensus 73 ---~~~~~A~~lg-iP~v~~~~~~ 92 (342)
.+..++...+ +|.+....+.
T Consensus 86 ~~~~~~l~~~~~~~~~~i~~~hg~ 109 (139)
T PF13477_consen 86 YGLFAMLAKKLLKNKKVIYTVHGS 109 (139)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCC
Confidence 3455677888 8988665543
No 140
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=90.91 E-value=0.15 Score=40.90 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=40.9
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCCC--ccc-----CCCCCc-chh---hhHHHHHHHHHHHhhCCCCCCccEEEECC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNMA--SQA-----LDLKHS-RIV---FYIDHNRAFILFVNQNGNQPAVSCIISDG 69 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~~--~~~-----~~~p~~-~~~---~~~~~~~~li~~~~~~~~~~~pD~vI~D~ 69 (342)
.+|++.| +++||+|++++... ...-. ... ++.+.. ... .....+..++.. . ..+||+|.+..
T Consensus 8 ~~l~~~L-~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----~~~~Dvv~~~~ 81 (160)
T PF13579_consen 8 RELARAL-AARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAA-R----RERPDVVHAHS 81 (160)
T ss_dssp HHHHHHH-HHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHH-C----T---SEEEEEH
T ss_pred HHHHHHH-HHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhh-h----ccCCeEEEecc
Confidence 5789999 99999999999766 33211 111 111111 111 333445555511 2 26899998665
Q ss_pred Cc-chHHHHHH-HhCCceEEEecch
Q 037221 70 FM-PFTIEAAQ-QLGLSVVMFLTIS 92 (342)
Q Consensus 70 ~~-~~~~~~A~-~lgiP~v~~~~~~ 92 (342)
.. .....+++ ..++|++......
T Consensus 82 ~~~~~~~~~~~~~~~~p~v~~~h~~ 106 (160)
T PF13579_consen 82 PTAGLVAALARRRRGIPLVVTVHGT 106 (160)
T ss_dssp HHHHHHHHHHHHHHT--EEEE-SS-
T ss_pred cchhHHHHHHHHccCCcEEEEECCC
Confidence 32 23334444 7899999877653
No 141
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.37 E-value=0.95 Score=36.73 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=45.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCCCc--ccCCC---CCc-c---hhhhHHHHHHHHHHHhhCCCCCCccEEEECCCc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNMAS--QALDL---KHS-R---IVFYIDHNRAFILFVNQNGNQPAVSCIISDGFM 71 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~~~--~~~~~---p~~-~---~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~ 71 (342)
++|++.| +++||+|++++... ...... ..... +.. . .......+..++++. +||+|-.....
T Consensus 19 ~~l~~~l-~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~DiVh~~~~~ 90 (177)
T PF13439_consen 19 LNLARAL-AKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKE-------KPDIVHIHGPP 90 (177)
T ss_dssp HHHHHHH-HHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHH-------T-SEEECCTTH
T ss_pred HHHHHHH-HHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHc-------CCCeEEecccc
Confidence 5789999 99999999998766 433321 00000 111 1 113445556666664 79999544333
Q ss_pred c-hHHHHHHHhCCceEEEecchh
Q 037221 72 P-FTIEAAQQLGLSVVMFLTISA 93 (342)
Q Consensus 72 ~-~~~~~A~~lgiP~v~~~~~~~ 93 (342)
. +....+-. ++|.+.......
T Consensus 91 ~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 91 AFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp CCCHHHHHHH-CSCEEEEE-HHH
T ss_pred hhHHHHHhcc-CCCEEEEeCCCc
Confidence 2 33333333 999998876655
No 142
>PHA01633 putative glycosyl transferase group 1
Probab=90.16 E-value=1.8 Score=40.28 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=49.0
Q ss_pred HHHHhCCCCCcceeec---cC-CchhHHHhhcCCcEEeccc------ccch------hhHHHHHHh-HhceEEEeccccc
Q 037221 215 QEEVLNHPSIGGFLTH---SG-WGSTIENLSAGVPMICWPF------EGDQ------MTNCRYTYK-ERGIGMEINGDED 277 (342)
Q Consensus 215 q~~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~i~~P~------~~DQ------~~na~~~~~-~~G~G~~l~~~~~ 277 (342)
...+++.+++ ||.- =| ..+++||+++|+|+|+.-. .+|+ ..+....+. +.|.|..++ ..
T Consensus 217 l~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~-~~- 292 (335)
T PHA01633 217 IFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH-KF- 292 (335)
T ss_pred HHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec-CC-
Confidence 4567888887 7753 24 4478899999999998632 2332 223322212 346777666 35
Q ss_pred CCHhHHHHHHHHHHcC
Q 037221 278 GIRNVIQKSVRELLEG 293 (342)
Q Consensus 278 ~~~~~l~~~i~~ll~~ 293 (342)
+++++.++|.+++..
T Consensus 293 -d~~~la~ai~~~~~~ 307 (335)
T PHA01633 293 -QIEDMANAIILAFEL 307 (335)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 899999999998554
No 143
>PRK10125 putative glycosyl transferase; Provisional
Probab=89.00 E-value=7.8 Score=37.07 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=59.2
Q ss_pred EEEEecccccCCHHHHHHHHHHHhcCCCCE-EEEECCCC------C-------C---HHHHhCCCCCcceeec----cCC
Q 037221 175 IYVNFGIAIVVKKQQFIEVAMGLANSNHPF-LWIIRPDL------F-------P---QEEVLNHPSIGGFLTH----SGW 233 (342)
Q Consensus 175 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-iw~~~~~~------~-------p---q~~lL~~~~~~~~ItH----gG~ 233 (342)
+++..|.....+.+.+..+++++...+..+ ++.++... . + ...+++.+++ ||.- |--
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp 320 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYP 320 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCc
Confidence 444445432223334466778887754433 33333211 1 2 3456777887 7653 335
Q ss_pred chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 234 GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 234 ~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
.+++||+++|+|+|+....+ ....+ +. +.|..++. - +++++.+.+
T Consensus 321 ~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~-~--d~~~La~~~ 365 (405)
T PRK10125 321 LILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE-E--EVLQLAQLS 365 (405)
T ss_pred CHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC-C--CHHHHHhcc
Confidence 68899999999999998765 12223 33 56877763 2 667777643
No 144
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.93 E-value=2.5 Score=38.79 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=71.1
Q ss_pred HHHhcCCCCceEEEEecccc---cCCHHHHHHHHHHHhcCCCCEEEEECCCCC-----------------------CHHH
Q 037221 164 RWLDSKLPNSVIYVNFGIAI---VVKKQQFIEVAMGLANSNHPFLWIIRPDLF-----------------------PQEE 217 (342)
Q Consensus 164 ~~l~~~~~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-----------------------pq~~ 217 (342)
.++....+++.|.+..|+.. ..+.+.+.++++.|...+.++++..+++.. ....
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~a 250 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAA 250 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHH
Confidence 34443334566666666543 356778888888886667776655443210 3455
Q ss_pred HhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEE-Ee-c---ccccCCHhHHHHHHHHHH
Q 037221 218 VLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGM-EI-N---GDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 218 lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~-~l-~---~~~~~~~~~l~~~i~~ll 291 (342)
+++++++ ||+. ..|.++=|.+.|+|.|++ ++ +.+..+. .-+|-.. .+ . ..+ ++++|.++++++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~-~P~~~~~~~~~~~~~~~I--~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRT-GGYGKPNVALLGESGANP--TPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhc-ccCCCCceEEccCccCCC--CHHHHHHHHHhhC
Confidence 7778886 7774 677888888999999875 22 1111221 1122221 11 1 167 9999999998764
No 145
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=88.60 E-value=3.2 Score=36.38 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=46.0
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhcCCCCEEEEECCCC----------------C----------CHHHHhCC
Q 037221 171 PNSVIYVNFGIAI---VVKKQQFIEVAMGLANSNHPFLWIIRPDL----------------F----------PQEEVLNH 221 (342)
Q Consensus 171 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~----------------~----------pq~~lL~~ 221 (342)
+++.|.+..|+.. ..+.+.+.++++.|.+.+++++...++.+ . ....++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 4567777777764 35678888888888877766665544322 0 34457777
Q ss_pred CCCcceeeccCCchhHHHhhcCCcEEec
Q 037221 222 PSIGGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 222 ~~~~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
+++ ||+. ..|.++=|.+.|+|+|++
T Consensus 184 a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp SSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred CCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 776 6664 567777888899999987
No 146
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=88.50 E-value=21 Score=33.12 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=53.5
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhcCCCCEEEEECCC--CC-------------------------CHHHHhC
Q 037221 171 PNSVIYVNFGIAI---VVKKQQFIEVAMGLANSNHPFLWIIRPD--LF-------------------------PQEEVLN 220 (342)
Q Consensus 171 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~--~~-------------------------pq~~lL~ 220 (342)
.++.|.+..|+.. ..+.+.+.++++.|...+.++++..++. +. ....+++
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 4566777777653 3456777888877766667766654432 10 3556788
Q ss_pred CCCCcceeeccCCchhHHHhhcCCcEEec
Q 037221 221 HPSIGGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
++++ ||+. ..|-++=|.+.|+|.|.+
T Consensus 260 ~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 260 HARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred hCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 8887 8887 788899999999999975
No 147
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=87.01 E-value=1.1 Score=38.23 Aligned_cols=84 Identities=14% Similarity=-0.016 Sum_probs=48.3
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCC----------C--CCc-------chh--hhHHHHHHHHHHHhhCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALD----------L--KHS-------RIV--FYIDHNRAFILFVNQNGN 58 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~----------~--p~~-------~~~--~~~~~~~~li~~~~~~~~ 58 (342)
..|++.| ++.||+|+++.+.. ++-. ....+. + +.+ .-| -..-.+..++.+
T Consensus 17 ~aL~~~L-~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv~~al~~~~~~------ 89 (196)
T PF01975_consen 17 RALAKAL-SALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCVKLALDGLLPD------ 89 (196)
T ss_dssp HHHHHHH-TTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHHHHHHHCTSTT------
T ss_pred HHHHHHH-HhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHHHHHHHhhhcc------
Confidence 4688999 99999999999988 6555 311111 1 111 111 122222222222
Q ss_pred CCCccEEEECC----------C---cchHHHHHHHhCCceEEEecchh
Q 037221 59 QPAVSCIISDG----------F---MPFTIEAAQQLGLSVVMFLTISA 93 (342)
Q Consensus 59 ~~~pD~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~~~ 93 (342)
.+||+||+.. + +.++..-|..+|||.+.++....
T Consensus 90 -~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 90 -KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp -SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred -CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 3699999632 1 23556667788999999986554
No 148
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.04 E-value=8.4 Score=40.37 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHHHhCCCCCcceeec---cCCc-hhHHHhhcCCc---EEecccccchhhHHHHHHhHhc-eEEEecccccCCHhHHHHH
Q 037221 215 QEEVLNHPSIGGFLTH---SGWG-STIENLSAGVP---MICWPFEGDQMTNCRYTYKERG-IGMEINGDEDGIRNVIQKS 286 (342)
Q Consensus 215 q~~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP---~i~~P~~~DQ~~na~~~~~~~G-~G~~l~~~~~~~~~~l~~~ 286 (342)
...++..+++ |+.- =|+| +..|++++|+| ++++.-++ ..+. .+| -|+.++. . +.+.++++
T Consensus 369 l~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVnP-~--D~~~lA~A 436 (797)
T PLN03063 369 LCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVNP-W--NITEVSSA 436 (797)
T ss_pred HHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEECC-C--CHHHHHHH
Confidence 4567888888 6644 3766 56699999999 34443221 1111 233 4666663 4 88999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 287 VRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 287 i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
|.++|+.+.. +-+++.+++.+.... .+...-+.+|++.+.+.
T Consensus 437 I~~aL~m~~~-er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 437 IKEALNMSDE-ERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHhCCHH-HHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 9999984431 244555555555554 44556677777777543
No 149
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.09 E-value=2.1 Score=42.34 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=48.5
Q ss_pred CHHHHhCCCCCcceeecc---CCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHS---GWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHg---G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
.-..++...++ +|.-+ |.++.+||+.+|+|+| .......+ +...=|..+. +..++.+++..+
T Consensus 421 dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~-----d~~~l~~al~~~ 485 (519)
T TIGR03713 421 DLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID-----DISELLKALDYY 485 (519)
T ss_pred HHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC-----CHHHHHHHHHHH
Confidence 34567777777 77655 6779999999999999 22233344 4444455553 889999999999
Q ss_pred HcCCh
Q 037221 291 LEGEK 295 (342)
Q Consensus 291 l~~~~ 295 (342)
|.+.+
T Consensus 486 L~~~~ 490 (519)
T TIGR03713 486 LDNLK 490 (519)
T ss_pred HhCHH
Confidence 99885
No 150
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.48 E-value=4.9 Score=35.89 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=46.8
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCCC-CcccCCCCCc-chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcc------h
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDLKHS-RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMP------F 73 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~p~~-~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~------~ 73 (342)
.|++.| .++||+|+..+... .... ...+.. |-- +. .-...+.+++++ .++|+||--.+.+ -
T Consensus 14 ~la~~L-~~~g~~v~~s~~t~~~~~~~~~~g~~-~v~~g~-l~~~~l~~~l~~-------~~i~~VIDAtHPfA~~is~~ 83 (256)
T TIGR00715 14 AIAKGL-IAQGIEILVTVTTSEGKHLYPIHQAL-TVHTGA-LDPQELREFLKR-------HSIDILVDATHPFAAQITTN 83 (256)
T ss_pred HHHHHH-HhCCCeEEEEEccCCccccccccCCc-eEEECC-CCHHHHHHHHHh-------cCCCEEEEcCCHHHHHHHHH
Confidence 578889 89999999887665 4333 311100 000 00 123345566655 4789888443333 3
Q ss_pred HHHHHHHhCCceEEEe
Q 037221 74 TIEAAQQLGLSVVMFL 89 (342)
Q Consensus 74 ~~~~A~~lgiP~v~~~ 89 (342)
+..+|+.+|||++.+.
T Consensus 84 a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 84 ATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHhCCcEEEEE
Confidence 4678889999999974
No 151
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=81.47 E-value=15 Score=36.70 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=49.5
Q ss_pred CHHHHhCCCCCcceee---ccCCc-hhHHHhhcCCcEEeccccc-chhhHHHHHHhHh-ceEEEecc------cccCCHh
Q 037221 214 PQEEVLNHPSIGGFLT---HSGWG-STIENLSAGVPMICWPFEG-DQMTNCRYTYKER-GIGMEING------DEDGIRN 281 (342)
Q Consensus 214 pq~~lL~~~~~~~~It---HgG~~-s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~~-G~G~~l~~------~~~~~~~ 281 (342)
+..+++..|++ ||. +=|+| +++||+++|+|+|+....+ ....+ ..+ ..- ..|+.+.. .. +.+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v-~~~~~~gi~V~~r~~~~~~e--~v~ 540 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHI-EDPESYGIYIVDRRFKSPDE--SVQ 540 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHh-ccCCCceEEEecCCccchHH--HHH
Confidence 78889999998 555 34544 8899999999999987643 22222 111 111 25666642 23 567
Q ss_pred HHHHHHHHHHcCC
Q 037221 282 VIQKSVRELLEGE 294 (342)
Q Consensus 282 ~l~~~i~~ll~~~ 294 (342)
.+.+++.+++..+
T Consensus 541 ~La~~m~~~~~~~ 553 (590)
T cd03793 541 QLTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHHhCCc
Confidence 8888888888544
No 152
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=81.14 E-value=53 Score=32.32 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=63.1
Q ss_pred HHHhCCCCCcceee--ccCCchhH-HHhhcCC----cEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHH
Q 037221 216 EEVLNHPSIGGFLT--HSGWGSTI-ENLSAGV----PMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVR 288 (342)
Q Consensus 216 ~~lL~~~~~~~~It--HgG~~s~~-eal~~Gv----P~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~ 288 (342)
..++..+++ ++|| .-|+|-+. |.++++. |+|.--+.+ |. +++.-++.++. . +.+.+.++|.
T Consensus 376 ~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP-~--d~~~~A~ai~ 443 (487)
T TIGR02398 376 SAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP-Y--DPVRMDETIY 443 (487)
T ss_pred HHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC-C--CHHHHHHHHH
Confidence 446777887 3443 34888655 9999877 555543322 11 23344566653 5 8899999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 289 ELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 289 ~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
+.|+.+.. +-+++.+++.+.+.. .....=+++|++.|..
T Consensus 444 ~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 444 VALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred HHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 99998752 245556666665554 4445667778877754
No 153
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=80.71 E-value=24 Score=34.34 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=58.4
Q ss_pred CHHHHhCCCCCcceee---ccCCc-hhHHHhhcCCc----EEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHH
Q 037221 214 PQEEVLNHPSIGGFLT---HSGWG-STIENLSAGVP----MICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQK 285 (342)
Q Consensus 214 pq~~lL~~~~~~~~It---HgG~~-s~~eal~~GvP----~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~ 285 (342)
....++..+++ ||. +-|+| +++||+++|+| +|+.-..+- . +...-|+.++. - +.+++.+
T Consensus 353 el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-----~---~~~~~g~lv~p-~--d~~~la~ 419 (460)
T cd03788 353 ELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-----A---EELSGALLVNP-Y--DIDEVAD 419 (460)
T ss_pred HHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc-----h---hhcCCCEEECC-C--CHHHHHH
Confidence 44557888888 663 34544 67899999999 554433221 0 11123455542 3 7899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037221 286 SVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNES 331 (342)
Q Consensus 286 ~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l 331 (342)
+|.++++++.. +.+++.++..+.+.+ -+...-+.+++++|
T Consensus 420 ai~~~l~~~~~-e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 420 AIHRALTMPLE-ERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 99999987641 133333334444432 55556666666654
No 154
>PRK12342 hypothetical protein; Provisional
Probab=80.50 E-value=5.4 Score=35.51 Aligned_cols=82 Identities=11% Similarity=-0.011 Sum_probs=53.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-C--CC-C-C---cccCCC--------CCc-chhhhHHHHHHHHHHHhhCCCCCCccE
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-K--KN-M-A---SQALDL--------KHS-RIVFYIDHNRAFILFVNQNGNQPAVSC 64 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~--~~-~-~---~~~~~~--------p~~-~~~~~~~~~~~li~~~~~~~~~~~pD~ 64 (342)
|+.|-+| ++.|-+||.+|--+ . .. + + .-+.|. ..+ |.......+...++++ .||+
T Consensus 41 lE~AlrL-k~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~-------~~DL 112 (254)
T PRK12342 41 IEAASQL-ATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKI-------GFDL 112 (254)
T ss_pred HHHHHHH-hhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHh-------CCCE
Confidence 4567788 87799999998554 3 23 2 2 111111 111 2225666777777774 5899
Q ss_pred EEECCCcc------hHHHHHHHhCCceEEEecc
Q 037221 65 IISDGFMP------FTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 65 vI~D~~~~------~~~~~A~~lgiP~v~~~~~ 91 (342)
|++...+. -+..+|+.||+|++.+...
T Consensus 113 Vl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 113 LLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred EEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 99654332 4899999999999997654
No 155
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.74 E-value=52 Score=30.49 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=54.2
Q ss_pred CceEEEEec-ccc---cCCHHHHHHHHHHHhcCCCCEEEEECCCCC-----------------------CHHHHhCCCCC
Q 037221 172 NSVIYVNFG-IAI---VVKKQQFIEVAMGLANSNHPFLWIIRPDLF-----------------------PQEEVLNHPSI 224 (342)
Q Consensus 172 ~~~V~vs~G-s~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-----------------------pq~~lL~~~~~ 224 (342)
++.|.+..| |.. ..+.+.+.++++.+.+.+.++++..++++. ....+++++++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 678999988 442 467899999999999888666654433211 34557778886
Q ss_pred cceeeccCCchhHHHhhcCCcEEec
Q 037221 225 GGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 225 ~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
||+ ...|-++=|.+.|+|.|.+
T Consensus 255 --~I~-~DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 255 --VIG-NDSGPMHLAAALGTPTIAL 276 (334)
T ss_pred --EEc-cCChHHHHHHHcCCCEEEE
Confidence 665 4677788888899999864
No 156
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=77.03 E-value=7.8 Score=34.32 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=49.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCCCCc------------chh--hhHHHHHHHHHHHhhCCCCCCccEE
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDLKHS------------RIV--FYIDHNRAFILFVNQNGNQPAVSCI 65 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~p~~------------~~~--~~~~~~~~li~~~~~~~~~~~pD~v 65 (342)
-.|++.| + .+++|++|.+.. ++-. ..-.+..|-. .-| -..-.+..++++ .+||+|
T Consensus 17 ~aL~~al-~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaDCV~lal~~l~~~-------~~pDLV 87 (252)
T COG0496 17 RALARAL-R-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPADCVILGLNELLKE-------PRPDLV 87 (252)
T ss_pred HHHHHHH-h-hCCCEEEEccCCCCcccccccccccCceeeEeccceEEecCChHHHHHHHHHHhccC-------CCCCEE
Confidence 3678888 7 999999999987 6555 2111111111 011 122234444444 369999
Q ss_pred EECC-------------CcchHHHHHHHhCCceEEEecch
Q 037221 66 ISDG-------------FMPFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 66 I~D~-------------~~~~~~~~A~~lgiP~v~~~~~~ 92 (342)
|+.. -+.+|++=|..+|||.+.++...
T Consensus 88 vSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 88 VSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred EeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 8642 23356666778999999998653
No 157
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=76.63 E-value=60 Score=30.84 Aligned_cols=93 Identities=23% Similarity=0.112 Sum_probs=56.3
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEe--ccc
Q 037221 174 VIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMIC--WPF 251 (342)
Q Consensus 174 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~--~P~ 251 (342)
-|+|+-|..+ ++.-++.++++.+..+ .+-++-|+ |..++..++.+|.|+.. ++.
T Consensus 218 AI~vpVGGGG-----LiaGIat~vk~~~p~v------------------kIIGVEt~-~a~~f~~sl~~g~~V~lp~i~s 273 (457)
T KOG1250|consen 218 AIVVPVGGGG-----LIAGIATGVKRVGPHV------------------KIIGVETE-GAHSFNASLKAGKPVTLPKITS 273 (457)
T ss_pred eEEEecCCch-----hHHHHHHHHHHhCCCC------------------ceEEEeec-CcHHHHHHHhcCCeeecccccc
Confidence 6888877664 5667888888765322 11124444 67889999999998742 223
Q ss_pred ccch------hhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 252 EGDQ------MTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 252 ~~DQ------~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
++|- -.|+.+..+..--.+. .+ +.+++..+|.++++|++
T Consensus 274 ~AdglaV~~Vg~~tf~~a~~~~d~vv---vV--~~~ei~aaI~~l~edek 318 (457)
T KOG1250|consen 274 LADGLAVKTVGENTFELAQKLVDRVV---VV--EDDEIAAAILRLFEDEK 318 (457)
T ss_pred hhcccccchhhHHHHHHHHhcCceEE---Ee--ccHHHHHHHHHHHHhhh
Confidence 3331 1233333222222222 35 78889999999998775
No 158
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=75.73 E-value=16 Score=33.99 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhcCCCCEEEEECCCCC---------------------------CHHHHhC
Q 037221 171 PNSVIYVNFGIAI---VVKKQQFIEVAMGLANSNHPFLWIIRPDLF---------------------------PQEEVLN 220 (342)
Q Consensus 171 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~---------------------------pq~~lL~ 220 (342)
+++.|.+..|+.. ..+.+.+.++++.|...+.++++..++++. ....+++
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 3466777777753 346777888888887667777665443210 3445677
Q ss_pred CCCCcceeeccCCchhHHHhhcCCcEEec
Q 037221 221 HPSIGGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
++++ ||+. ..|-++=|.+.|+|.|++
T Consensus 262 ~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 262 HAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred hCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 7776 7764 567777788899999864
No 159
>PRK14099 glycogen synthase; Provisional
Probab=73.35 E-value=39 Score=33.16 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=48.5
Q ss_pred CCCEEEEECCCCCCHHHHh-CCCCCcceee---ccC-CchhHHHhhcCCcEEeccccc--chhhHHHHHHhH--hceEEE
Q 037221 201 NHPFLWIIRPDLFPQEEVL-NHPSIGGFLT---HSG-WGSTIENLSAGVPMICWPFEG--DQMTNCRYTYKE--RGIGME 271 (342)
Q Consensus 201 ~~~~iw~~~~~~~pq~~lL-~~~~~~~~It---HgG-~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~--~G~G~~ 271 (342)
+.+++..++.+. ....++ +.+++ |+. +=| ..+.+||+++|+|.|+....+ |--.+.....+. -+.|..
T Consensus 349 ~~~v~~~~G~~~-~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l 425 (485)
T PRK14099 349 PGQIGVVIGYDE-ALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ 425 (485)
T ss_pred CCCEEEEeCCCH-HHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE
Confidence 445544444321 223333 56777 764 233 347789999997766654422 322221111011 146777
Q ss_pred ecccccCCHhHHHHHHHH---HHcCCh
Q 037221 272 INGDEDGIRNVIQKSVRE---LLEGEK 295 (342)
Q Consensus 272 l~~~~~~~~~~l~~~i~~---ll~~~~ 295 (342)
++. - +++++.+++.+ +++|+.
T Consensus 426 ~~~-~--d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 426 FSP-V--TADALAAALRKTAALFADPV 449 (485)
T ss_pred eCC-C--CHHHHHHHHHHHHHHhcCHH
Confidence 663 3 88999999987 565654
No 160
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=73.32 E-value=48 Score=26.93 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=66.4
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-CH--HHH---hCCCCCcceeeccCCchhHHHhh---cCC
Q 037221 174 VIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-PQ--EEV---LNHPSIGGFLTHSGWGSTIENLS---AGV 244 (342)
Q Consensus 174 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-pq--~~l---L~~~~~~~~ItHgG~~s~~eal~---~Gv 244 (342)
.|.|-+||.. +....++....|+..+..+-..+-+.+. |+ .++ +..-..+.||+=.|...-+-++. .-.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~ 79 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTL 79 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCC
Confidence 4666677765 4567778888888888766666555554 22 112 22222334998888654443332 378
Q ss_pred cEEecccccchhhHH----HHHHhHhceEEEecccccCCHhHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHH
Q 037221 245 PMICWPFEGDQMTNC----RYTYKERGIGMEINGDEDGIRNVIQKSVRELL--EGEKGKQMRNKASEWKKLVVE 312 (342)
Q Consensus 245 P~i~~P~~~DQ~~na----~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll--~~~~~~~~r~~a~~l~~~~~~ 312 (342)
|+|.+|....+.... ..+.---|+.+..-. ++ +...-.-...++| .|++ ++++.+..++.+++
T Consensus 80 PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~-i~-~~~nAA~~A~~ILa~~d~~---l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 80 PVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVG-IN-NGFNAALLAARILALKDPE---LREKLRAYREKMKE 148 (150)
T ss_dssp -EEEEEE-STTTTTHHHHHHHHT--TTS--EE-S-ST-HHHHHHHHHHHHHHTT-HH---HHHHHHHHHHHHHH
T ss_pred CEEEeecCcccccCcccHHHHHhccCCCCceEEE-cc-CchHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHc
Confidence 999999876644322 222112255543321 10 1222222222333 4555 88888888887775
No 161
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=72.15 E-value=17 Score=32.19 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=47.6
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCCCC-ccc-CCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEE--ECCCcc----h
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKNMA-SQA-LDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCII--SDGFMP----F 73 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~~~-~~~-~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI--~D~~~~----~ 73 (342)
.||..| .++|+.|+..+.-+ ...-. +.. .-| .+ .-...+.+++++ .++++|| +++|+. -
T Consensus 16 ~la~~L-~~~g~~v~~Svat~~g~~~~~~~~v~~G---~l-~~~~~l~~~l~~-------~~i~~VIDATHPfA~~is~~ 83 (248)
T PRK08057 16 ALARAL-AAAGVDIVLSLAGRTGGPADLPGPVRVG---GF-GGAEGLAAYLRE-------EGIDLVIDATHPYAAQISAN 83 (248)
T ss_pred HHHHHH-HhCCCeEEEEEccCCCCcccCCceEEEC---CC-CCHHHHHHHHHH-------CCCCEEEECCCccHHHHHHH
Confidence 577888 88999888776555 33111 000 000 00 145677788876 5789988 455443 4
Q ss_pred HHHHHHHhCCceEEEe
Q 037221 74 TIEAAQQLGLSVVMFL 89 (342)
Q Consensus 74 ~~~~A~~lgiP~v~~~ 89 (342)
+..+|+.+|||++.|.
T Consensus 84 a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 84 AAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHhCCcEEEEe
Confidence 5678899999999975
No 162
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=71.75 E-value=5.1 Score=37.61 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=105.8
Q ss_pred cEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhh---ccccccccceEEEEcCchhhhHHHHHHHhhhCC
Q 037221 63 SCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLK---EKGLVASKASGIIFHTFDALEVQVLDAISAMFP 139 (342)
Q Consensus 63 D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p 139 (342)
..+|+|.........-..-+..++.++.+.+.-........... .........+.+++.+- .+...+...-...+
T Consensus 80 k~~i~~~~~~~~~~~~~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~--~~~~~~~~~f~~~~ 157 (369)
T PF04464_consen 80 KYIISDSYFPDLIYFKKRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSE--FEKEIFKKAFGYPE 157 (369)
T ss_dssp EEEEESS---T--TS---TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSH--HHHHHHHHHTT--G
T ss_pred cEEEECCCCCcccccccCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCH--HHHHHHHHHhccCc
Confidence 78888843333233344567788888877744211111000000 00011445567777663 22222211111112
Q ss_pred -ceeecccccccccc-ccccchhHHHHHHhcCCCCceEEEEe--cccccC-------CHHHHHHHHHHHhcCCCCEEEEE
Q 037221 140 -NLFTIGPLQLLLYQ-NLWKKETECLRWLDSKLPNSVIYVNF--GIAIVV-------KKQQFIEVAMGLANSNHPFLWII 208 (342)
Q Consensus 140 -~~~~vGpl~~~~~~-~~~~~~~~~~~~l~~~~~~~~V~vs~--Gs~~~~-------~~~~~~~~~~al~~~~~~~iw~~ 208 (342)
++...|-.-.+.-. ........+.+.++....+.+|+.+- -..... ..-....+. .+...+..+++..
T Consensus 158 ~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~li~k~ 236 (369)
T PF04464_consen 158 DKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLN-FLLKNNYVLIIKP 236 (369)
T ss_dssp GGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT-HHHHH-HHHTTTEEEEE--
T ss_pred ceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccCHHHHH-HHhCCCcEEEEEe
Confidence 36666543221110 11111223444444444444555542 111111 111233344 5566666666654
Q ss_pred CCC-------------C-------CCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHH----HHh
Q 037221 209 RPD-------------L-------FPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRY----TYK 264 (342)
Q Consensus 209 ~~~-------------~-------~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~----~~~ 264 (342)
.+. + .+..++|..+++ +||--. ..+.|.+..++|+|....-.|...+.+- . +
T Consensus 237 Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~-~ 312 (369)
T PF04464_consen 237 HPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDY-E 312 (369)
T ss_dssp SHHHHTT----TT-TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-T-T
T ss_pred CchhhhchhhhhccCCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCch-H
Confidence 210 0 057789999998 999874 4778999999999976544443321110 1 1
Q ss_pred HhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037221 265 ERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLV 328 (342)
Q Consensus 265 ~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i 328 (342)
+...|..+ - +.++|.++|..++.++. .++++-++..+.+-. -.+|.+.+.+.+.|
T Consensus 313 ~~~pg~~~---~--~~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~--~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 313 EDLPGPIV---Y--NFEELIEAIENIIENPD--EYKEKREKFRDKFFK--YNDGNSSERIVNYI 367 (369)
T ss_dssp TSSSS-EE---S--SHHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST--T--S-HHHHHHHHH
T ss_pred hhCCCcee---C--CHHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC--CCCchHHHHHHHHH
Confidence 22333332 2 78999999999887664 356666666666643 14455555555544
No 163
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=2.1 Score=40.52 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=55.0
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC--CcccCCCCCcchh-hhHHHHHHHHHHHhhCCCCCCccEEEECCCcc-h--
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM--ASQALDLKHSRIV-FYIDHNRAFILFVNQNGNQPAVSCIISDGFMP-F-- 73 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~--~~~~~~~p~~~~~-~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~-~-- 73 (342)
+|+++..| +++| +|..++.++ ..++ ++..++-+..++. ...-.++++++.+++ .+||++|.|.... +
T Consensus 110 LLQva~~l-A~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 110 LLQVAARL-AKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLYSE 183 (456)
T ss_pred HHHHHHHH-HhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh----cCCCEEEEeccceeecc
Confidence 47889999 9999 999999998 7777 3333332223322 334456677777765 6899999987432 1
Q ss_pred ------------------HHHHHHHhCCceEEEe
Q 037221 74 ------------------TIEAAQQLGLSVVMFL 89 (342)
Q Consensus 74 ------------------~~~~A~~lgiP~v~~~ 89 (342)
...+|+..||+.+.+-
T Consensus 184 ~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 184 EITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 2346677777776654
No 164
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.87 E-value=18 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.3
Q ss_pred CHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEeccc
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPF 251 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~ 251 (342)
+-.+++.+++. +||-.+ ++-.||+.+|+|++++..
T Consensus 192 ~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 192 NLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 77889999996 777644 477899999999999753
No 165
>PLN02939 transferase, transferring glycosyl groups
Probab=69.59 E-value=48 Score=35.38 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=45.6
Q ss_pred HHHhCCCCCcceeec----cCCchhHHHhhcCCcEEeccccc--chhhH--HHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 216 EEVLNHPSIGGFLTH----SGWGSTIENLSAGVPMICWPFEG--DQMTN--CRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 216 ~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~i~~P~~~--DQ~~n--a~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
..+++.+++ ||.- +-..+.+||+++|+|.|+....+ |-..+ ...+.++-+-|...+. . +++.+.++|
T Consensus 851 h~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~-~--D~eaLa~AL 925 (977)
T PLN02939 851 HSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT-P--DEQGLNSAL 925 (977)
T ss_pred HHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC-C--CHHHHHHHH
Confidence 368888998 7753 22447899999999999876644 32211 1111012345666553 3 788888888
Q ss_pred HHHHc
Q 037221 288 RELLE 292 (342)
Q Consensus 288 ~~ll~ 292 (342)
.+++.
T Consensus 926 ~rAL~ 930 (977)
T PLN02939 926 ERAFN 930 (977)
T ss_pred HHHHH
Confidence 88764
No 166
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=69.29 E-value=25 Score=32.00 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCCEEEEECCCC---------CCHHHHhCCCCCcceeeccCCchhHHHhh----cCCcEEecccccch
Q 037221 189 QFIEVAMGLANSNHPFLWIIRPDL---------FPQEEVLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQ 255 (342)
Q Consensus 189 ~~~~~~~al~~~~~~~iw~~~~~~---------~pq~~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ 255 (342)
.+..+++.|++.+..+.+...... .+..++-..+++ +|+-||-||+++++. .++|++.+-.
T Consensus 22 ~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~---- 95 (291)
T PRK02155 22 PLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH---- 95 (291)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC----
Confidence 344555556666655554321100 022333344566 999999999999976 3678776642
Q ss_pred hhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 256 MTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 256 ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
-++ |-.. .. +++++.+.+.++++++
T Consensus 96 --------G~l--GFL~--~~--~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 96 --------GRL--GFIT--DI--PLDDMQETLPPMLAGN 120 (291)
T ss_pred --------CCc--cccc--cC--CHHHHHHHHHHHHcCC
Confidence 111 1111 35 7788888888887654
No 167
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=68.55 E-value=15 Score=32.53 Aligned_cols=80 Identities=15% Similarity=-0.005 Sum_probs=46.8
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCC-------C--Cc-------chh--hhHHHHHHHHHHHhhCCCCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDL-------K--HS-------RIV--FYIDHNRAFILFVNQNGNQPA 61 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~-------p--~~-------~~~--~~~~~~~~li~~~~~~~~~~~ 61 (342)
..|++.| ++.| +|+++.+.. ++-. ....+.. + .+ .-| -..-.+..++. .+
T Consensus 17 ~aL~~~l-~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~gl~~l~~--------~~ 86 (244)
T TIGR00087 17 RALYQAL-KELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILGINELMP--------EV 86 (244)
T ss_pred HHHHHHH-HhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHHHHHhcc--------CC
Confidence 4688899 8888 899998887 6555 3111111 1 11 111 12222233322 37
Q ss_pred ccEEEECC-------------CcchHHHHHHHhCCceEEEecc
Q 037221 62 VSCIISDG-------------FMPFTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 62 pD~vI~D~-------------~~~~~~~~A~~lgiP~v~~~~~ 91 (342)
||+||+.. -+.+|..-|..+|||.+.++..
T Consensus 87 pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 87 PDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred CCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 89998543 1235666677889999999853
No 168
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=68.43 E-value=53 Score=27.20 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=57.0
Q ss_pred CccEEEECCCcchHHHHHHHhCCce-EEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCC
Q 037221 61 AVSCIISDGFMPFTIEAAQQLGLSV-VMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFP 139 (342)
Q Consensus 61 ~pD~vI~D~~~~~~~~~A~~lgiP~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p 139 (342)
+-|+++.|. .....+++.+|.|. -.+.....+. ... ... .......+++-+.++.-......++...|
T Consensus 5 ~adlv~~DG--~~i~~~~~~~g~~~~~rv~g~dl~~-~l~----~~~----~~~~~~ifllG~~~~~~~~~~~~l~~~yP 73 (172)
T PF03808_consen 5 SADLVLPDG--MPIVWAARLLGRPLPERVTGSDLFP-DLL----RRA----EQRGKRIFLLGGSEEVLEKAAANLRRRYP 73 (172)
T ss_pred hCCEEecCC--HHHHHHHHHcCCCCCcccCHHHHHH-HHH----HHH----HHcCCeEEEEeCCHHHHHHHHHHHHHHCC
Confidence 359999994 45667788888887 3332211111 111 000 02233455555554444445556677778
Q ss_pred ceeeccccccccccccccchhHHHHHHhcCCCCceEEEEeccc
Q 037221 140 NLFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIA 182 (342)
Q Consensus 140 ~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~ 182 (342)
++..+|-....-. ....+.+.+.+...++ .+|+|++|+-
T Consensus 74 ~l~ivg~~~g~f~---~~~~~~i~~~I~~~~p-div~vglG~P 112 (172)
T PF03808_consen 74 GLRIVGYHHGYFD---EEEEEAIINRINASGP-DIVFVGLGAP 112 (172)
T ss_pred CeEEEEecCCCCC---hhhHHHHHHHHHHcCC-CEEEEECCCC
Confidence 7776664432111 1134456666665433 4788887765
No 169
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=67.87 E-value=22 Score=31.71 Aligned_cols=82 Identities=9% Similarity=-0.054 Sum_probs=52.6
Q ss_pred hhhcchhhccC--CCeEEEEeCCC-CCC----CC---cccCCC--------CCc-chhhhHHHHHHHHHHHhhCCCCCCc
Q 037221 2 LQLAKLPHHHK--GFHITFVNFEN-KKN----MA---SQALDL--------KHS-RIVFYIDHNRAFILFVNQNGNQPAV 62 (342)
Q Consensus 2 l~la~~L~~~~--Gh~Vt~~~~~~-~~~----~~---~~~~~~--------p~~-~~~~~~~~~~~li~~~~~~~~~~~p 62 (342)
|+.|.+| +++ |.+||.+|--+ ... ++ .-+.|- ..+ |.......+...++++ .|
T Consensus 42 lE~Alrl-ke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~-------~~ 113 (256)
T PRK03359 42 IEAACQL-KQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKA-------GF 113 (256)
T ss_pred HHHHHHH-hhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHh-------CC
Confidence 5667888 886 37999999655 322 22 111111 111 2225666677777775 58
Q ss_pred cEEEECCCc------chHHHHHHHhCCceEEEecc
Q 037221 63 SCIISDGFM------PFTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 63 D~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 91 (342)
|+|++...+ .-+..+|+.||+|++.+...
T Consensus 114 DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 114 DLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 999964322 26788999999999997654
No 170
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=66.74 E-value=17 Score=32.30 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=46.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCCCC-------c-----chh--hhHHHHHHHHHHHhhCCCCCCccEE
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDLKH-------S-----RIV--FYIDHNRAFILFVNQNGNQPAVSCI 65 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~p~-------~-----~~~--~~~~~~~~li~~~~~~~~~~~pD~v 65 (342)
..|++.| .+. |+|+++.+.. ++-. ....+..|. + .-| -..-.+..+++ .+||+|
T Consensus 17 ~aL~~~l-~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~v~GTPaDcV~~gl~~l~~--------~~pDlV 86 (250)
T PRK00346 17 RALAEAL-REL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNGFYAVDGTPTDCVHLALNGLLD--------PKPDLV 86 (250)
T ss_pred HHHHHHH-HhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCCeEEECCcHHHHHHHHHHhhcc--------CCCCEE
Confidence 4678888 887 7999999887 6555 311111111 1 111 11222222322 378999
Q ss_pred EECC----------C---cchHHHHHHHhCCceEEEecc
Q 037221 66 ISDG----------F---MPFTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 66 I~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 91 (342)
|+.. + +.+|..-|..+|||.+.++..
T Consensus 87 vSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 87 VSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred EeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 8642 1 235666677889999999863
No 171
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.22 E-value=27 Score=31.71 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHhCCCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHc
Q 037221 217 EVLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 217 ~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~ 292 (342)
++...+++ +|+-||-||++.++. .++|++.+-.. .+|. + ..+ +++++.+++.++++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G------------~lGF---L-t~~--~~~~~~~~l~~i~~ 119 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG------------HLGF---L-TDI--TVDEAEKFFQAFFQ 119 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC------------Cccc---C-CcC--CHHHHHHHHHHHHc
Confidence 33345666 999999999998866 47787766321 1111 1 135 67788888888876
Q ss_pred CC
Q 037221 293 GE 294 (342)
Q Consensus 293 ~~ 294 (342)
++
T Consensus 120 g~ 121 (287)
T PRK14077 120 GE 121 (287)
T ss_pred CC
Confidence 54
No 172
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=65.85 E-value=24 Score=34.50 Aligned_cols=106 Identities=11% Similarity=0.165 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCC--CEEEEECCCCC-CHHHHhCCCCCcceeeccC---CchhHHHhhcCCcEEecccccchhhHHH
Q 037221 187 KQQFIEVAMGLANSNH--PFLWIIRPDLF-PQEEVLNHPSIGGFLTHSG---WGSTIENLSAGVPMICWPFEGDQMTNCR 260 (342)
Q Consensus 187 ~~~~~~~~~al~~~~~--~~iw~~~~~~~-pq~~lL~~~~~~~~ItHgG---~~s~~eal~~GvP~i~~P~~~DQ~~na~ 260 (342)
.+.++++.+-+++.+. +++|.+..... .-..++..+.+ .|++-.+ .-++.||+++|+|++..=..+ -+.
T Consensus 328 ~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~-v~~qPa~E~FGiv~IEAMa~glPvvAt~~GG----P~E 402 (495)
T KOG0853|consen 328 VEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKG-VLYQPANEHFGIVPIEAMACGLPVVATNNGG----PAE 402 (495)
T ss_pred HHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcce-EEecCCCCCccceeHHHHhcCCCEEEecCCC----ceE
Confidence 4566777777776643 77777644332 11223333332 3555444 227789999999999863322 222
Q ss_pred HHHhHhceEEEecc-cccCCHhHHHHHHHHHHcCChHHHHHHHH
Q 037221 261 YTYKERGIGMEING-DEDGIRNVIQKSVRELLEGEKGKQMRNKA 303 (342)
Q Consensus 261 ~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a 303 (342)
.+ ...-.|..++. .. ....+.+++.++..|++ ++.++
T Consensus 403 iV-~~~~tG~l~dp~~e--~~~~~a~~~~kl~~~p~---l~~~~ 440 (495)
T KOG0853|consen 403 IV-VHGVTGLLIDPGQE--AVAELADALLKLRRDPE---LWARM 440 (495)
T ss_pred EE-EcCCcceeeCCchH--HHHHHHHHHHHHhcCHH---HHHHH
Confidence 23 34444555553 22 33479999999999998 55443
No 173
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=65.48 E-value=32 Score=31.62 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCceEEEEeccc-c---cCCHHHHHHHHHHHhcCCCCEEEEECCCCC------------------------CHHHHhCCC
Q 037221 171 PNSVIYVNFGIA-I---VVKKQQFIEVAMGLANSNHPFLWIIRPDLF------------------------PQEEVLNHP 222 (342)
Q Consensus 171 ~~~~V~vs~Gs~-~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------------------------pq~~lL~~~ 222 (342)
.++.|.+..|+. . ..+.+.+.++++.|...+.+++..-++++. ....+++++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 456777777764 2 356777888888776666666654433221 345577778
Q ss_pred CCcceeeccCCchhHHHhhcCCcEEec
Q 037221 223 SIGGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 223 ~~~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
++ ||+. ..|-++=|.+.|+|+|.+
T Consensus 253 ~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 253 KA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred CE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 86 7774 567788888999999864
No 174
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=65.24 E-value=18 Score=32.30 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=45.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCC--------CC-c-------chhhhHHHHHHHHHHHhhCCCCCCcc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDL--------KH-S-------RIVFYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~--------p~-~-------~~~~~~~~~~~li~~~~~~~~~~~pD 63 (342)
..|++.| .+.| +|++|.+.. ++-. ..-.+.. .. + .-| ...+.--+..+.. .+||
T Consensus 22 ~aL~~~l-~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTP--aDCV~lal~~~~~----~~pD 93 (257)
T PRK13932 22 HVLAASM-KKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTP--VDCIKVALSHILP----EKPD 93 (257)
T ss_pred HHHHHHH-HhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcH--HHHHHHHHHhhcC----CCCC
Confidence 4688889 8888 798888877 5544 2111110 11 1 111 0111112222211 3799
Q ss_pred EEEECC-------------CcchHHHHHHHhCCceEEEec
Q 037221 64 CIISDG-------------FMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 64 ~vI~D~-------------~~~~~~~~A~~lgiP~v~~~~ 90 (342)
+||+.. -+.+|..-|..+|||.+.++.
T Consensus 94 LVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 94 LIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred EEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 998642 133566667788999999985
No 175
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=65.13 E-value=42 Score=31.40 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC--CHHHHhCCCC--CcceeeccCCchh
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF--PQEEVLNHPS--IGGFLTHSGWGST 236 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~--pq~~lL~~~~--~~~~ItHgG~~s~ 236 (342)
+..+.-.+.+++.+||++-|-.+. .+.....+..|-++...+|-....-..+ ....+|..++ +.+||.-|=-.++
T Consensus 120 dAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI 198 (364)
T PRK15062 120 DALKIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTI 198 (364)
T ss_pred HHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEEE
Confidence 345556667889999999887653 3444444555655555555433322222 3677777764 7888887644433
Q ss_pred HHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCC
Q 037221 237 IENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAP 316 (342)
Q Consensus 237 ~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~ 316 (342)
.-+ .. +.... +++|+-..+.+ + .+.+|..+|..++.. +.+.-.++...+..++.+
T Consensus 199 ~G~---------------~~-y~~l~-~~y~~P~VVaG-F--Ep~DiL~ai~~lv~q-----~~~g~~~v~N~Y~r~V~~ 253 (364)
T PRK15062 199 IGT---------------EP-YEFLA-EEYGIPVVVAG-F--EPLDILQSILMLVRQ-----LEEGRAEVENQYTRVVKE 253 (364)
T ss_pred ecc---------------ch-hHHHH-HHcCCCeEEec-c--CHHHHHHHHHHHHHH-----HHCCCceEEEccceeeCc
Confidence 211 11 12222 66676666664 5 777777777666531 222222333444445556
Q ss_pred CCchHHHHHHHHHHHhCC
Q 037221 317 DGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 317 ~g~~~~~~~~~i~~l~~~ 334 (342)
.|. ..+.++++++.+.
T Consensus 254 eGN--~~A~~~i~~vFe~ 269 (364)
T PRK15062 254 EGN--LKAQELIAEVFEV 269 (364)
T ss_pred ccC--HHHHHHHHHHcCc
Confidence 666 5577777776553
No 176
>PLN02929 NADH kinase
Probab=63.80 E-value=27 Score=31.95 Aligned_cols=98 Identities=10% Similarity=0.156 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCchhHHHhh---cCCcEEeccccc------chh
Q 037221 186 KKQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLS---AGVPMICWPFEG------DQM 256 (342)
Q Consensus 186 ~~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~---~GvP~i~~P~~~------DQ~ 256 (342)
.++..+.+.+.|++.+..+....+.+ .......+++ +|+-||-||++.+.. .++|++.+=... +++
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~---~~~~~~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~ 106 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNE---LSQPIRDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEY 106 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccc---cccccCCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccc
Confidence 45666777777887776663332221 1233455666 999999999999855 478988875431 123
Q ss_pred hHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 257 TNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 257 ~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.|... +..-.|-.. .. +++++.+++.+++++.
T Consensus 107 ~~~~~--~~r~lGfL~--~~--~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 107 SDEFD--ARRSTGHLC--AA--TAEDFEQVLDDVLFGR 138 (301)
T ss_pred ccccc--cccCccccc--cC--CHHHHHHHHHHHHcCC
Confidence 33311 111233222 35 7899999999999764
No 177
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=63.59 E-value=19 Score=31.99 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=23.1
Q ss_pred CCccEEEECC----------C---cchHHHHHHHhCCceEEEecc
Q 037221 60 PAVSCIISDG----------F---MPFTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 60 ~~pD~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 91 (342)
.+||+||+.. + +.+|..-|..+|||.+.++..
T Consensus 86 ~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 86 DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 3799998642 2 235666677889999999863
No 178
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=63.10 E-value=70 Score=33.25 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=61.4
Q ss_pred CHHHHhCCCCCcceeec---cCC-chhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH---SGW-GSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRE 289 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ 289 (342)
....++..+++ |+.- -|+ .++.|++++|+|-...|+..+--.-+..+ .-|+.++. . +++.+.++|.+
T Consensus 354 ~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P-~--d~~~la~ai~~ 424 (726)
T PRK14501 354 ELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP-N--DIEGIAAAIKR 424 (726)
T ss_pred HHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-C--CHHHHHHHHHH
Confidence 34457788887 6543 254 47789999977522222222111112222 22666653 4 88999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 290 LLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 290 ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
++.++.. +.+++.+++.+.+.+ .+...-+++|++.+.+.
T Consensus 425 ~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 425 ALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 9986531 244444555555443 55566677777776543
No 179
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=63.04 E-value=34 Score=31.77 Aligned_cols=79 Identities=6% Similarity=-0.132 Sum_probs=47.8
Q ss_pred hhcchhhcc--CCCeEEEEeCCC-CCCC-CcccCCC--C--Cc-chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcch
Q 037221 3 QLAKLPHHH--KGFHITFVNFEN-KKNM-ASQALDL--K--HS-RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPF 73 (342)
Q Consensus 3 ~la~~L~~~--~Gh~Vt~~~~~~-~~~~-~~~~~~~--p--~~-~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~ 73 (342)
.+.+.| ++ .+.+|++++.+. .+.+ ....++. + .. .. .......+++++++. .++|++|.=....-
T Consensus 19 P~l~~L-k~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~-~~~~~~~~l~~~lr~----~~yD~vidl~~~~~ 92 (348)
T PRK10916 19 SLYRTL-KARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGA-LEIGERRRLGHSLRE----KRYDRAYVLPNSFK 92 (348)
T ss_pred HHHHHH-HHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccch-hhhHHHHHHHHHHHh----cCCCEEEECCCcHH
Confidence 345666 66 489999999887 6655 3222221 1 00 00 112234567777765 68999985444556
Q ss_pred HHHHHHHhCCceEE
Q 037221 74 TIEAAQQLGLSVVM 87 (342)
Q Consensus 74 ~~~~A~~lgiP~v~ 87 (342)
...++...|+|.-.
T Consensus 93 s~~l~~~~~~~~ri 106 (348)
T PRK10916 93 SALVPFFAGIPHRT 106 (348)
T ss_pred HHHHHHHcCCCeEe
Confidence 66777888988654
No 180
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.46 E-value=24 Score=32.22 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=37.4
Q ss_pred HhhcCCcEEecccccchhhH--HHHHHhHhceEEEecccccCCHhHHHH-HHHHHHcCChHHHHHHHHH
Q 037221 239 NLSAGVPMICWPFEGDQMTN--CRYTYKERGIGMEINGDEDGIRNVIQK-SVRELLEGEKGKQMRNKAS 304 (342)
Q Consensus 239 al~~GvP~i~~P~~~DQ~~n--a~~~~~~~G~G~~l~~~~~~~~~~l~~-~i~~ll~~~~~~~~r~~a~ 304 (342)
++-.|+|+|.+|-.+-|+.- |.+=..-+|+.+.+-. ....... +..+++.|++ +...++
T Consensus 326 avGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~----~~aq~a~~~~q~ll~dp~---r~~air 387 (412)
T COG4370 326 AVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR----PEAQAAAQAVQELLGDPQ---RLTAIR 387 (412)
T ss_pred hhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC----CchhhHHHHHHHHhcChH---HHHHHH
Confidence 35589999999999988764 4333133577777654 2233333 3445999987 555444
No 181
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=61.87 E-value=25 Score=31.26 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCccEEEEC----------CC---cchHHHHHHHhCCceEEEec
Q 037221 60 PAVSCIISD----------GF---MPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 60 ~~pD~vI~D----------~~---~~~~~~~A~~lgiP~v~~~~ 90 (342)
.+||+||+. .+ +.+|..-|..+|||.+.++.
T Consensus 85 ~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 85 KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 379999863 22 23555666788999999986
No 182
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=61.83 E-value=89 Score=25.81 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=54.8
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhCCc
Q 037221 61 AVSCIISDGFMPFTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMFPN 140 (342)
Q Consensus 61 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~p~ 140 (342)
..|+++.|. .....+++.+|.+...-.+.+-+.... ..... ......+++=+.++.-....+..+...|+
T Consensus 3 ~a~~~~~DG--~~l~~~~~~~~~~~~~r~~g~dl~~~l----l~~~~----~~~~~v~llG~~~~~~~~~~~~l~~~yp~ 72 (171)
T cd06533 3 SADLVLPDG--IGVVWAARLLGGPLPERVTGSDLMPAL----LELAA----QKGLRVFLLGAKPEVLEKAAERLRARYPG 72 (171)
T ss_pred CCCEEecCc--HHHHHHHHHcCCCCCcccCcHHHHHHH----HHHHH----HcCCeEEEECCCHHHHHHHHHHHHHHCCC
Confidence 459999994 456668888888743322222221111 11100 12334445544444434444556677787
Q ss_pred eeeccccccccccccccchhHHHHHHhcCCCCceEEEEeccc
Q 037221 141 LFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIA 182 (342)
Q Consensus 141 ~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~ 182 (342)
+..+|-....... ..++++.+.+.... .-+|+|++|+=
T Consensus 73 l~i~g~~~g~~~~---~~~~~i~~~I~~~~-pdiv~vglG~P 110 (171)
T cd06533 73 LKIVGYHHGYFGP---EEEEEIIERINASG-ADILFVGLGAP 110 (171)
T ss_pred cEEEEecCCCCCh---hhHHHHHHHHHHcC-CCEEEEECCCC
Confidence 7777633221110 11233555666543 34888888764
No 183
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.71 E-value=21 Score=29.25 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhCCCCCCccEEEECCCc----------chHHHHHHHhCCceEEEecchhhH
Q 037221 43 IDHNRAFILFVNQNGNQPAVSCIISDGFM----------PFTIEAAQQLGLSVVMFLTISACS 95 (342)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~pD~vI~D~~~----------~~~~~~A~~lgiP~v~~~~~~~~~ 95 (342)
.-.+++++..++.-+-.++||+|++...+ --+..+|+++|+|+.-.+.....+
T Consensus 106 FLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 106 FLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 33568888888765555789999976533 246778999999998876555444
No 184
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=60.59 E-value=22 Score=34.39 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=55.4
Q ss_pred CHHHHhCCCCCcceeeccC--CchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTHSG--WGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG--~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
...+++..|++=+-|+||. ..++.||+.+|+|++..=.... +...+ .. |-... .- +.+++.++|.++|
T Consensus 340 ~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~-~~--~~~~m~~~i~~lL 409 (438)
T TIGR02919 340 KIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFE-HN--EVDQLISKLKDLL 409 (438)
T ss_pred HHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---Cceec-CC--CHHHHHHHHHHHh
Confidence 4567899999866788876 6789999999999998754322 11222 22 32222 23 8899999999999
Q ss_pred cCChHHHHHHHHHH
Q 037221 292 EGEKGKQMRNKASE 305 (342)
Q Consensus 292 ~~~~~~~~r~~a~~ 305 (342)
.+++ .++++..+
T Consensus 410 ~d~~--~~~~~~~~ 421 (438)
T TIGR02919 410 NDPN--QFRELLEQ 421 (438)
T ss_pred cCHH--HHHHHHHH
Confidence 9986 25555444
No 185
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.21 E-value=71 Score=28.05 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=44.9
Q ss_pred HHHHhCCCCCcceeec---cCCch-hHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHH
Q 037221 215 QEEVLNHPSIGGFLTH---SGWGS-TIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVREL 290 (342)
Q Consensus 215 q~~lL~~~~~~~~ItH---gG~~s-~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~l 290 (342)
...++..+++ ++.- .|.|. +.|++++|+|+|..... .....+ ...+.|. +.... +.+.+.+++..+
T Consensus 270 ~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~~~~--~~~~~~~~i~~~ 339 (381)
T COG0438 270 LAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LVPPG--DVEELADALEQL 339 (381)
T ss_pred HHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ecCCC--CHHHHHHHHHHH
Confidence 3446777776 5555 35544 59999999999766543 222333 3332455 33222 578999999999
Q ss_pred HcCCh
Q 037221 291 LEGEK 295 (342)
Q Consensus 291 l~~~~ 295 (342)
+++.+
T Consensus 340 ~~~~~ 344 (381)
T COG0438 340 LEDPE 344 (381)
T ss_pred hcCHH
Confidence 88874
No 186
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=59.60 E-value=31 Score=31.59 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCC----------------------CC-CHHHHhCCCCCcceeeccCCchhHHHhh
Q 037221 185 VKKQQFIEVAMGLANSNHPFLWIIRPD----------------------LF-PQEEVLNHPSIGGFLTHSGWGSTIENLS 241 (342)
Q Consensus 185 ~~~~~~~~~~~al~~~~~~~iw~~~~~----------------------~~-pq~~lL~~~~~~~~ItHgG~~s~~eal~ 241 (342)
.+.+.+.++++.+...+.++++..++. .. ....++.++++ ||+. ..|.++=|.+
T Consensus 194 Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l--~I~n-DSGp~HlA~A 270 (322)
T PRK10964 194 WPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKA--VVSV-DTGLSHLTAA 270 (322)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCE--EEec-CCcHHHHHHH
Confidence 456677777777765565555432221 00 45668888887 8875 5778888999
Q ss_pred cCCcEEec--ccccch----hhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHc
Q 037221 242 AGVPMICW--PFEGDQ----MTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 242 ~GvP~i~~--P~~~DQ----~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~ 292 (342)
.|+|+|++ |..... ..|...+ .. ++-++. ++ +++++.++++++|.
T Consensus 271 ~g~p~valfGpt~p~~~~p~~~~~~~~-~~--~~~cm~-~I--~~e~V~~~~~~~l~ 321 (322)
T PRK10964 271 LDRPNITLYGPTDPGLIGGYGKNQHAC-RS--PGKSMA-DL--SAETVFQKLETLIS 321 (322)
T ss_pred hCCCEEEEECCCCcccccCCCCCceee-cC--CCcccc-cC--CHHHHHHHHHHHhh
Confidence 99999875 322111 1111111 10 011111 68 99999999988764
No 187
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=59.44 E-value=1.5e+02 Score=27.38 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=50.0
Q ss_pred CHHHHhCCCCCcceeec--cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH--SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVREL 290 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~l 290 (342)
.+..+|+.|+++-|+++ =|.||++-.+..|+|.++--. =+.+.. + .+.|+-+-.+. .+ +...+.++=+++
T Consensus 219 eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l-~e~gv~Vlf~~d~L--~~~~v~e~~rql 291 (322)
T PRK02797 219 DYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-L-TEQGLPVLFTGDDL--DEDIVREAQRQL 291 (322)
T ss_pred HHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-H-HhCCCeEEecCCcc--cHHHHHHHHHHH
Confidence 67889999999777775 489999999999999987532 222333 3 45677765554 66 777777665554
Q ss_pred H
Q 037221 291 L 291 (342)
Q Consensus 291 l 291 (342)
.
T Consensus 292 ~ 292 (322)
T PRK02797 292 A 292 (322)
T ss_pred H
Confidence 3
No 188
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=57.78 E-value=67 Score=30.12 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC--CHHHHhCCC--CCcceeeccCCchh
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF--PQEEVLNHP--SIGGFLTHSGWGST 236 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~--pq~~lL~~~--~~~~~ItHgG~~s~ 236 (342)
+..+.-.+.+++.+||++-|-.+. .+.....+.++.++--.+|-....-..+ ....+|..+ .+.+||.-|=-.++
T Consensus 126 dAl~iA~~nPdk~VVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I 204 (369)
T TIGR00075 126 DALKIAKENPDRKVVFFAIGFETT-APTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTI 204 (369)
T ss_pred HHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEE
Confidence 345556667889999999887653 3444445556655433344333221122 467788775 46888886643333
Q ss_pred HHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCC
Q 037221 237 IENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAP 316 (342)
Q Consensus 237 ~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~ 316 (342)
. +-+.+. ... ++.++-..+.+ + .+.+|..+|..++.. +.++-.++...+..++.+
T Consensus 205 ~---------------G~~~y~-~l~-~~y~~P~VVaG-F--Ep~DiL~~i~~ll~q-----i~~g~~~v~N~Y~R~V~~ 259 (369)
T TIGR00075 205 I---------------GAKPYA-PIA-EKYKIPIVIAG-F--EPVDILQAIYMLLKQ-----AISGEAKVENQYKRAVKP 259 (369)
T ss_pred e---------------ccchhH-HHH-HHcCCCeEEec-c--CHHHHHHHHHHHHHH-----HHCCCceEEEeeceeeCC
Confidence 2 222221 223 66676666664 5 777777777766531 222233333444555556
Q ss_pred CCchHHHHHHHHHHHhCC
Q 037221 317 DGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 317 ~g~~~~~~~~~i~~l~~~ 334 (342)
.|. ..+.++++++.+.
T Consensus 260 eGN--~~Aq~~i~~vFe~ 275 (369)
T TIGR00075 260 EGN--VKAQKAIDEVFER 275 (369)
T ss_pred ccC--HHHHHHHHHHccc
Confidence 666 5677777776553
No 189
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=56.94 E-value=1.2e+02 Score=25.96 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
.++.+++..+......++.+||+|--.-.+..-|+.+|||+..+..
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 4566777665311123578899998778899999999999988754
No 190
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=56.03 E-value=32 Score=32.15 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCCCcceeeccCCch---hHHHhhcCCcEEec
Q 037221 221 HPSIGGFLTHSGWGS---TIENLSAGVPMICW 249 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s---~~eal~~GvP~i~~ 249 (342)
.|++ +|++||+-| +..|...|+|.++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 3666 999999997 88999999999764
No 191
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=55.79 E-value=43 Score=30.04 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.3
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM 27 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~ 27 (342)
..|++.| .+.| +|+++.+.. ++-.
T Consensus 17 ~aL~~al-~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 17 RLLYEFV-SPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred HHHHHHH-HhCC-cEEEEccCCCCccc
Confidence 4688889 8888 799888776 5444
No 192
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.48 E-value=50 Score=30.28 Aligned_cols=55 Identities=15% Similarity=0.364 Sum_probs=37.6
Q ss_pred CCCCCcceeeccCCchhHHHhhc----CCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 220 NHPSIGGFLTHSGWGSTIENLSA----GVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 220 ~~~~~~~~ItHgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
..+++ +|+=||-||++.++.. ++|++.+-.. .+|. + ..+ +++++.++++++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G------------~lGF---L-t~~--~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG------------HLGF---L-TEA--YLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC------------CCcc---c-ccC--CHHHHHHHHHHHHcCC
Confidence 34565 9999999999999763 7788776321 1110 0 135 7788888888888755
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=55.02 E-value=23 Score=29.13 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHH-----HHh-CCceEEEecchhhHhhhhhhhhhhhccccccccc
Q 037221 42 YIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAA-----QQL-GLSVVMFLTISACSFMGYKQFRTLKEKGLVASKA 115 (342)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A-----~~l-giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (342)
+.+.+.++|++ .+||+||+-...+....++ ..+ ++|.+.+.+-.... +. .......
T Consensus 77 ~~~~l~~~l~~-------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~----H~-------~W~~~~~ 138 (169)
T PF06925_consen 77 FARRLIRLLRE-------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTV----HP-------FWIHPGV 138 (169)
T ss_pred HHHHHHHHHhh-------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCC----Cc-------CeecCCC
Confidence 33445555555 5899999886443333122 223 57877665532110 01 1124567
Q ss_pred eEEEEcC
Q 037221 116 SGIIFHT 122 (342)
Q Consensus 116 ~~~l~~~ 122 (342)
|.+++.+
T Consensus 139 D~y~Vas 145 (169)
T PF06925_consen 139 DRYFVAS 145 (169)
T ss_pred CEEEECC
Confidence 7788876
No 194
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=55.02 E-value=19 Score=33.21 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=47.3
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C-cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEA 77 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~ 77 (342)
|.+|++.| .++|.+|.++++++ .+.. . ........-++. ....+.++..-++ +-|++|+. ..+...+
T Consensus 196 ~~~li~~l-~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~-g~~sL~el~ali~------~a~l~I~~--DSGp~Hl 265 (334)
T TIGR02195 196 YAELAKRL-IDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLA-GETSLDEAVDLIA------LAKAVVTN--DSGLMHV 265 (334)
T ss_pred HHHHHHHH-HHCCCEEEEEEChhhHHHHHHHHHhCCcccccCC-CCCCHHHHHHHHH------hCCEEEee--CCHHHHH
Confidence 35788889 88899999998876 5433 2 000000000110 1112333333332 34899965 3467889
Q ss_pred HHHhCCceEEEec
Q 037221 78 AQQLGLSVVMFLT 90 (342)
Q Consensus 78 A~~lgiP~v~~~~ 90 (342)
|..+|+|++.+..
T Consensus 266 AaA~~~P~i~lfG 278 (334)
T TIGR02195 266 AAALNRPLVALYG 278 (334)
T ss_pred HHHcCCCEEEEEC
Confidence 9999999998865
No 195
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=54.93 E-value=20 Score=34.54 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 46 NRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 46 ~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
+.++.+.+++ .+||++|.+. ....+|+++|+|++.+.
T Consensus 360 ~~el~~~i~~----~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 360 LWDLESLAKE----EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHHhhc----cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 3444444443 4799999997 45788999999998754
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=53.08 E-value=98 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.9
Q ss_pred CcceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 224 IGGFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 224 ~~~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
.+.+++|.|-| .+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44488887755 5568889999999985
No 197
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=52.34 E-value=26 Score=28.65 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=36.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGF 70 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~ 70 (342)
+.||..| +++|++|.++-... ...+ .-.... .....++.+++.+.. .++|+||.|.-
T Consensus 18 ~~LA~~l-a~~g~~vllvD~D~q~~~~~~~~~~~-------~~~~~l~~~~~~~~~----~~yD~VIiD~p 76 (169)
T cd02037 18 VNLALAL-AKLGYKVGLLDADIYGPSIPKMWRGP-------MKMGAIKQFLTDVDW----GELDYLVIDMP 76 (169)
T ss_pred HHHHHHH-HHcCCcEEEEeCCCCCCCchHHHhCc-------chHHHHHHHHHHhhc----CCCCEEEEeCC
Confidence 4688999 99999999998766 5433 200000 223445555555431 47899999973
No 198
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.30 E-value=63 Score=29.45 Aligned_cols=57 Identities=16% Similarity=0.382 Sum_probs=38.9
Q ss_pred HhCCCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcC
Q 037221 218 VLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEG 293 (342)
Q Consensus 218 lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~ 293 (342)
+...+++ +|+=||-||++.++. .++|++.+-.. ++|. + ..+ +++++.+++.+++++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~lGF---L-t~~--~~~~~~~~l~~i~~g 120 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG------------RLGF---L-ATV--SKEEIEETIDELLNG 120 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC------------CCCc---c-ccc--CHHHHHHHHHHHHcC
Confidence 3344666 999999999999877 47788776431 1111 1 135 778888888888876
Q ss_pred C
Q 037221 294 E 294 (342)
Q Consensus 294 ~ 294 (342)
.
T Consensus 121 ~ 121 (292)
T PRK01911 121 D 121 (292)
T ss_pred C
Confidence 5
No 199
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=51.87 E-value=27 Score=32.55 Aligned_cols=80 Identities=5% Similarity=0.052 Sum_probs=47.0
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC--C--cccCCCCCc-chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM--A--SQALDLKHS-RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFT 74 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~--~--~~~~~~p~~-~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~ 74 (342)
|.+|++.| .++|++|.+++.+. .+.. . ......+.- ++. ..-.+.++..-++ +-|++|+. ..+.
T Consensus 204 fa~l~~~L-~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~-g~~sL~el~ali~------~a~l~v~n--DSGp 273 (352)
T PRK10422 204 FSAVIDAL-QARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALA-GKTTFPELGALID------HAQLFIGV--DSAP 273 (352)
T ss_pred HHHHHHHH-HHCCCeEEEEcCCChHHHHHHHHHHHhcCCCcccccc-CCCCHHHHHHHHH------hCCEEEec--CCHH
Confidence 45788999 88999999987764 3221 1 000000000 111 1112344444442 34899976 3467
Q ss_pred HHHHHHhCCceEEEec
Q 037221 75 IEAAQQLGLSVVMFLT 90 (342)
Q Consensus 75 ~~~A~~lgiP~v~~~~ 90 (342)
..+|..+|+|++.+..
T Consensus 274 ~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 274 AHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHHHHcCCCEEEEEC
Confidence 8889999999999875
No 200
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=51.53 E-value=28 Score=29.38 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=37.6
Q ss_pred hhhcchhhccC--CCeEEEEeCCC--CCCC-C--cccCCC---CCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCc
Q 037221 2 LQLAKLPHHHK--GFHITFVNFEN--KKNM-A--SQALDL---KHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFM 71 (342)
Q Consensus 2 l~la~~L~~~~--Gh~Vt~~~~~~--~~~~-~--~~~~~~---p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~ 71 (342)
..|+++| .++ |++|.+-|+.. .+.+ + +..... |. -....++.+++.+ +||++|.--..
T Consensus 38 ~~Li~~l-~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~----D~~~~~~rfl~~~-------~P~~~i~~EtE 105 (186)
T PF04413_consen 38 RPLIKRL-RKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPL----DFPWAVRRFLDHW-------RPDLLIWVETE 105 (186)
T ss_dssp HHHHHHH-TT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE-------SSHHHHHHHHHHH---------SEEEEES--
T ss_pred HHHHHHH-HHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCc----cCHHHHHHHHHHh-------CCCEEEEEccc
Confidence 4677888 776 89998888644 3333 2 111110 11 2355678888988 68888743345
Q ss_pred chH--HHHHHHhCCceEEEec
Q 037221 72 PFT--IEAAQQLGLSVVMFLT 90 (342)
Q Consensus 72 ~~~--~~~A~~lgiP~v~~~~ 90 (342)
.|. ...|++.|||.+.+..
T Consensus 106 lWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 106 LWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --HHHHHH-----S-EEEEEE
T ss_pred cCHHHHHHHhhcCCCEEEEee
Confidence 554 4567778999999864
No 201
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=51.42 E-value=18 Score=33.57 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=48.6
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C-cccCCCC--Cc--chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcch
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQALDLK--HS--RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPF 73 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~~~p--~~--~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~ 73 (342)
|.+|++.| .++|++|.+++++. .+.. + ......+ .. ++. ..-.+.++..-+. +-|++|+. ..+
T Consensus 202 ~a~l~~~l-~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~-g~~sL~el~ali~------~a~l~I~n--DTG 271 (348)
T PRK10916 202 YAELAQQL-IDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLA-GETQLEQAVILIA------ACKAIVTN--DSG 271 (348)
T ss_pred HHHHHHHH-HHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeecc-CCCCHHHHHHHHH------hCCEEEec--CCh
Confidence 45788899 88899999998876 5443 2 0001000 00 111 1112444444442 34899966 346
Q ss_pred HHHHHHHhCCceEEEec
Q 037221 74 TIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 74 ~~~~A~~lgiP~v~~~~ 90 (342)
...+|..+|+|++.+..
T Consensus 272 p~HlAaA~g~P~valfG 288 (348)
T PRK10916 272 LMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHHhCCCEEEEEC
Confidence 78899999999999865
No 202
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.60 E-value=29 Score=28.86 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecch
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 92 (342)
.....++..++++.. ...|+||.+. .+..+|+++|+|++.+.++.
T Consensus 109 ~~~~e~~~~i~~~~~----~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 109 DSEEEIEAAIKQAKA----EGVDVIVGGG---VVCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp SSHHHHHHHHHHHHH----TT--EEEESH---HHHHHHHHTTSEEEESS--H
T ss_pred CCHHHHHHHHHHHHH----cCCcEEECCH---HHHHHHHHcCCcEEEEEecH
Confidence 345667788888765 5789999996 45788999999999876644
No 203
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.14 E-value=18 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=18.5
Q ss_pred eeeccCCchhHHHhhcCCcEEeccccc
Q 037221 227 FLTHSGWGSTIENLSAGVPMICWPFEG 253 (342)
Q Consensus 227 ~ItHgG~~s~~eal~~GvP~i~~P~~~ 253 (342)
+|++||...+..... ++|++-+|..+
T Consensus 38 iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 38 IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 999999888888877 99999998764
No 204
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=49.47 E-value=63 Score=28.91 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=21.7
Q ss_pred CccEEEEC----------CCc---chHHHHHHHhCCceEEEec
Q 037221 61 AVSCIISD----------GFM---PFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 61 ~pD~vI~D----------~~~---~~~~~~A~~lgiP~v~~~~ 90 (342)
+||+||+. .++ .+|..-|..+|||.+.++.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 79999863 222 3455666788999999985
No 205
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.66 E-value=30 Score=31.00 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=36.3
Q ss_pred CCCCcceeeccCCchhHHHhh------cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 221 HPSIGGFLTHSGWGSTIENLS------AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~------~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.+++ +|+-||-||++.++. .++|++.+-.. ++|.= .++ +++++.+.+.++++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G------------~lGFL----~~~--~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG------------HLGFY----TDW--RPFEVDKLVIALAKDP 94 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC------------Cceec----ccC--CHHHHHHHHHHHHcCC
Confidence 3455 999999999999976 47888776431 11111 134 6777777887777654
No 206
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=48.23 E-value=50 Score=26.88 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=46.1
Q ss_pred hhhcchhhcc-CCCeEEEEeCC---C-CCCC-C---cccCCC------CCcc---hhhhHHHHHHHHHHHhhCCCCCCcc
Q 037221 2 LQLAKLPHHH-KGFHITFVNFE---N-KKNM-A---SQALDL------KHSR---IVFYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 2 l~la~~L~~~-~Gh~Vt~~~~~---~-~~~~-~---~~~~~~------p~~~---~~~~~~~~~~li~~~~~~~~~~~pD 63 (342)
|..|++| ++ .|.+|+.++.- . .+.+ . ..+.+. |..+ .......+.+++++. +||
T Consensus 21 l~~A~~L-a~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~-------~~~ 92 (164)
T PF01012_consen 21 LEAARRL-AEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEE-------GPD 92 (164)
T ss_dssp HHHHHHH-HHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHH-------T-S
T ss_pred HHHHHHH-HhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhc-------CCC
Confidence 5677888 66 47787776643 2 2221 1 112111 1111 114556666777774 789
Q ss_pred EEEECCCcc---hHHHHHHHhCCceEEEec
Q 037221 64 CIISDGFMP---FTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 64 ~vI~D~~~~---~~~~~A~~lgiP~v~~~~ 90 (342)
+|+...-.. .+..+|.++|.|++.-..
T Consensus 93 lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 93 LVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp EEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred EEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 999665333 567789999999998554
No 207
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=47.79 E-value=1.5e+02 Score=24.16 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhc-CCCCEEEEECCCCC-----CHHHHhCCCCCcceeeccCCc-
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLAN-SNHPFLWIIRPDLF-----PQEEVLNHPSIGGFLTHSGWG- 234 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~iw~~~~~~~-----pq~~lL~~~~~~~~ItHgG~~- 234 (342)
+.++|.+.+- ..||-..|+.. ..+.+++.+ .+.+++........ -+...-..+.+ +++|.|-|
T Consensus 6 l~~~L~~~Gv-~~vFgipG~~~-------~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v--~~~t~GpG~ 75 (164)
T cd07039 6 IVETLENWGV-KRVYGIPGDSI-------NGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGV--CLGSSGPGA 75 (164)
T ss_pred HHHHHHHCCC-CEEEEcCCCch-------HHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEE--EEECCCCcH
Confidence 4455655432 24555555542 345555543 34454433211000 22223333444 89998866
Q ss_pred -----hhHHHhhcCCcEEecc
Q 037221 235 -----STIENLSAGVPMICWP 250 (342)
Q Consensus 235 -----s~~eal~~GvP~i~~P 250 (342)
.+.+|...++|+|++.
T Consensus 76 ~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 76 IHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred HHHHHHHHHHHhcCCCEEEEe
Confidence 5678999999999985
No 208
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.61 E-value=1.5e+02 Score=27.14 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=39.0
Q ss_pred HhCCCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcC
Q 037221 218 VLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEG 293 (342)
Q Consensus 218 lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~ 293 (342)
+...+++ +|+=||-||++.+.. .++|++.+-.. + +|-.- .+ +++++.+++.+++++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL~--~~--~~~~~~~~l~~i~~g 124 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFLT--QI--PREYMTDKLLPVLEG 124 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEee--cc--CHHHHHHHHHHHHcC
Confidence 3334666 999999999999975 47888776321 1 12111 35 778888888888875
Q ss_pred C
Q 037221 294 E 294 (342)
Q Consensus 294 ~ 294 (342)
+
T Consensus 125 ~ 125 (296)
T PRK04539 125 K 125 (296)
T ss_pred C
Confidence 4
No 209
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.89 E-value=1.6e+02 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=17.6
Q ss_pred CccEEEECCCcchHHHHHHHhCCceE
Q 037221 61 AVSCIISDGFMPFTIEAAQQLGLSVV 86 (342)
Q Consensus 61 ~pD~vI~D~~~~~~~~~A~~lgiP~v 86 (342)
+.|+++.|. .....+++.+|.|..
T Consensus 5 ~ad~v~~DG--~~iv~~~r~~g~~~~ 28 (177)
T TIGR00696 5 QAELVTPDG--IGVVWGLKLLGYPQQ 28 (177)
T ss_pred hCCEEecCc--HHHHHHHHHcCCCCC
Confidence 359999995 345667888887754
No 210
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.75 E-value=38 Score=32.78 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=41.0
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCCCCcccCCCCCcchh-hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHH
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKNMASQALDLKHSRIV-FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQ 80 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~~~p~~~~~-~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~ 80 (342)
.+++.| .+-|.+|..+.... .+..+.. +.+.+. .=...+.+++++ .+||++|.+. ....+|++
T Consensus 325 ~l~~~l-~elGm~v~~~~~~~~~~~~~~~----~~~~~~~~D~~~l~~~i~~-------~~~dliig~s---~~k~~A~~ 389 (432)
T TIGR01285 325 AWATFF-TSMGAQIVAAVTTTGSPLLQKL----PVETVVIGDLEDLEDLACA-------AGADLLITNS---HGRALAQR 389 (432)
T ss_pred HHHHHH-HHCCCEEEEEEeCCCCHHHHhC----CcCcEEeCCHHHHHHHHhh-------cCCCEEEECc---chHHHHHH
Confidence 456666 66777776666544 3322100 000000 001234444444 4799999986 55889999
Q ss_pred hCCceEEEe
Q 037221 81 LGLSVVMFL 89 (342)
Q Consensus 81 lgiP~v~~~ 89 (342)
+|||++.+.
T Consensus 390 l~ip~ir~g 398 (432)
T TIGR01285 390 LALPLVRAG 398 (432)
T ss_pred cCCCEEEec
Confidence 999998653
No 211
>PLN02470 acetolactate synthase
Probab=46.72 E-value=46 Score=33.55 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCcceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 223 SIGGFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 223 ~~~~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
.++++++|.|-| .+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 455589999966 6779999999999985
No 212
>PRK04940 hypothetical protein; Provisional
Probab=46.21 E-value=50 Score=27.73 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCCCCCccEEEE-CCCcchHHHHHHHhCCceEEEecch
Q 037221 43 IDHNRAFILFVNQNGNQPAVSCIIS-DGFMPFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~pD~vI~-D~~~~~~~~~A~~lgiP~v~~~~~~ 92 (342)
...+.++++++.... ..+++++|. ..-.+||.-+|+++|+|.|.+.|..
T Consensus 43 ~~~l~~~i~~~~~~~-~~~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 43 MQHLLKEVDKMLQLS-DDERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred HHHHHHHHHHhhhcc-CCCCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 344555655432100 014678884 4466699999999999999997755
No 213
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.49 E-value=2.8e+02 Score=29.81 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=57.6
Q ss_pred HHHHhCCCCCcceee---ccCCchh-HHHhhcCC---cEEecccccchhhHHHHHHhHhc-eEEEecccccCCHhHHHHH
Q 037221 215 QEEVLNHPSIGGFLT---HSGWGST-IENLSAGV---PMICWPFEGDQMTNCRYTYKERG-IGMEINGDEDGIRNVIQKS 286 (342)
Q Consensus 215 q~~lL~~~~~~~~It---HgG~~s~-~eal~~Gv---P~i~~P~~~DQ~~na~~~~~~~G-~G~~l~~~~~~~~~~l~~~ 286 (342)
...++..+++ |+- .-|+|.+ .|.++++. -+++++-+ .-+. +.+| -|+.++. . +.+.+.++
T Consensus 453 L~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf----aGaa---~~L~~~AllVNP-~--D~~~vA~A 520 (934)
T PLN03064 453 LCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF----AGAA---QSLGAGAILVNP-W--NITEVAAS 520 (934)
T ss_pred HHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC----CchH---HHhCCceEEECC-C--CHHHHHHH
Confidence 3456777887 543 3477755 49999954 12222322 1111 3344 3566653 4 78999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 287 VRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 287 i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
|.+.|+-+.. +-+++.+++.+.+.. .+...=+..|++.|...
T Consensus 521 I~~AL~M~~~-Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 521 IAQALNMPEE-EREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHhCCHH-HHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 9999883321 234444444444432 44456677777777643
No 214
>PRK11914 diacylglycerol kinase; Reviewed
Probab=44.77 E-value=64 Score=29.35 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEECCC-C-C-CH--HHHhCCCCCcceeeccCCchhHHHhh----cCCcEEeccc
Q 037221 187 KQQFIEVAMGLANSNHPFLWIIRPD-L-F-PQ--EEVLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPF 251 (342)
Q Consensus 187 ~~~~~~~~~al~~~~~~~iw~~~~~-~-~-pq--~~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~ 251 (342)
.+.+..+.+.|++.+..+....... . . -+ .......++ +|.-||-||+.|++. .++|+-++|.
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~--vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDA--LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCE--EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 3445556666666665543322111 1 0 00 111233444 999999999998873 5789999995
No 215
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.26 E-value=35 Score=33.84 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||+|+.+. +...+|+++|||++.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3799999997 56667899999998875
No 216
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.80 E-value=97 Score=28.22 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHhCCCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHc
Q 037221 217 EVLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 217 ~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~ 292 (342)
++...+++ +|+=||-||++.++. +++|++.+-.. .+|.-. .+ +++++.++++++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G------------~lGFl~----~~--~~~~~~~~l~~i~~ 118 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG------------NLGFLT----DL--DPDNALQQLSDVLE 118 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC------------CCCccc----cc--CHHHHHHHHHHHHc
Confidence 33344566 999999999999975 36777666331 112211 35 77888888888886
Q ss_pred CC
Q 037221 293 GE 294 (342)
Q Consensus 293 ~~ 294 (342)
+.
T Consensus 119 g~ 120 (292)
T PRK03378 119 GH 120 (292)
T ss_pred CC
Confidence 54
No 217
>PRK13059 putative lipid kinase; Reviewed
Probab=43.32 E-value=98 Score=28.06 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.1
Q ss_pred ceeeccCCchhHHHh---h---cCCcEEeccc
Q 037221 226 GFLTHSGWGSTIENL---S---AGVPMICWPF 251 (342)
Q Consensus 226 ~~ItHgG~~s~~eal---~---~GvP~i~~P~ 251 (342)
.+|.-||-||+.|.+ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 399999999988875 2 3588999996
No 218
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=43.02 E-value=37 Score=30.33 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=48.1
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCCC-C-cccCCCCCc-chhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHH
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQALDLKHS-RIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIE 76 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~~~p~~-~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~ 76 (342)
+.+|++.| .++|++|.++++++ .... . ......+.. ++ .....+.+++.-++ +-|++|+-. .+...
T Consensus 142 ~~~l~~~l-~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~-~~~~~l~e~~~li~------~~~l~I~~D--sg~~H 211 (279)
T cd03789 142 FAALADRL-LARGARVVLTGGPAERELAEEIAAALGGPRVVNL-AGKTSLRELAALLA------RADLVVTND--SGPMH 211 (279)
T ss_pred HHHHHHHH-HHCCCEEEEEechhhHHHHHHHHHhcCCCccccC-cCCCCHHHHHHHHH------hCCEEEeeC--CHHHH
Confidence 35788999 88899999998876 4433 2 111100000 11 11113344444443 348999652 36777
Q ss_pred HHHHhCCceEEEecc
Q 037221 77 AAQQLGLSVVMFLTI 91 (342)
Q Consensus 77 ~A~~lgiP~v~~~~~ 91 (342)
+|..+|+|++.+...
T Consensus 212 lA~a~~~p~i~l~g~ 226 (279)
T cd03789 212 LAAALGTPTVALFGP 226 (279)
T ss_pred HHHHcCCCEEEEECC
Confidence 888999999998753
No 219
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=42.61 E-value=1.2e+02 Score=25.68 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=48.1
Q ss_pred ecccccchhhHHHHHHhHhceEEEecc-------------cccCCHhHHH----HHHHHHHcCChHHHHHHHHHHHHHHH
Q 037221 248 CWPFEGDQMTNCRYTYKERGIGMEING-------------DEDGIRNVIQ----KSVRELLEGEKGKQMRNKASEWKKLV 310 (342)
Q Consensus 248 ~~P~~~DQ~~na~~~~~~~G~G~~l~~-------------~~~~~~~~l~----~~i~~ll~~~~~~~~r~~a~~l~~~~ 310 (342)
+.|...||...-..+-|-..+|+.... .+ +++.|+ +.|.++|.|+. +-+|-.++.+.+
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~F--d~~~VA~~~e~die~Ll~d~~---IIRnr~KI~Avi 96 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQF--DPVKVAAMQEEDVERLVQDAG---IIRHRGKIQAII 96 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCC--CHHHHhCCCHHHHHHHhcCch---hHHhHHHHHHHH
Confidence 456788998888777677888887631 35 677765 67888999987 444444444444
Q ss_pred HHH------cCCCCchHHHHHHH
Q 037221 311 VEA------AAPDGPSSKNLVKL 327 (342)
Q Consensus 311 ~~a------~~~~g~~~~~~~~~ 327 (342)
.+| .+++||=.+.+-.|
T Consensus 97 ~NA~~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 97 GNARAYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHHHHhcCCHHHHHhhc
Confidence 433 13566645555554
No 220
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=42.29 E-value=1.5e+02 Score=26.99 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=55.9
Q ss_pred eeeccccccccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-------
Q 037221 141 LFTIGPLQLLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF------- 213 (342)
Q Consensus 141 ~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------- 213 (342)
-.|+|....++..+ .....++..+..+.+-+++-.-..........+.+..+.++.++.|.++++.++....
T Consensus 98 drf~~~~~v~p~~~-~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~ 176 (293)
T COG2159 98 DRFVGFARVDPRDP-EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG 176 (293)
T ss_pred cceeeeeeeCCCch-HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC
Confidence 34455444333221 1234456666654322222222222222334555788999999999999998765322
Q ss_pred ---C--HHH-HhCCCCCcceeeccC--CchhHHH
Q 037221 214 ---P--QEE-VLNHPSIGGFLTHSG--WGSTIEN 239 (342)
Q Consensus 214 ---p--q~~-lL~~~~~~~~ItHgG--~~s~~ea 239 (342)
| ..+ .-..|+++-++.|+| ..=..|+
T Consensus 177 ~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 177 HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 1 122 445678899999999 6666666
No 221
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.88 E-value=3.1e+02 Score=25.90 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=73.7
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcC---------CC-CEEEEECCCC-C-------------------------
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANS---------NH-PFLWIIRPDL-F------------------------- 213 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~---------~~-~~iw~~~~~~-~------------------------- 213 (342)
+.++.++||--| ..+.+.+..+++||... +. ..+..+.+.. .
T Consensus 252 ~~~pallvsSTs--wTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~a 329 (444)
T KOG2941|consen 252 PERPALLVSSTS--WTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEA 329 (444)
T ss_pred cCCCeEEEecCC--CCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeeccccc
Confidence 456778887433 34566777777777622 21 3333332211 0
Q ss_pred -CHHHHhCCCCCcceeeccCCc-----hhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHH
Q 037221 214 -PQEEVLNHPSIGGFLTHSGWG-----STIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSV 287 (342)
Q Consensus 214 -pq~~lL~~~~~~~~ItHgG~~-----s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i 287 (342)
++-.+|+.+|+|..+|-...| -+..-.-+|+|++.+-+- --..+|++-.=|...+ +.+++.+.+
T Consensus 330 EDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk-----cl~ELVkh~eNGlvF~-----Ds~eLa~ql 399 (444)
T KOG2941|consen 330 EDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK-----CLDELVKHGENGLVFE-----DSEELAEQL 399 (444)
T ss_pred ccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch-----hHHHHHhcCCCceEec-----cHHHHHHHH
Confidence 677799999998888877665 344556677777665432 1122324433444443 889999999
Q ss_pred HHHHcC----Ch-HHHHHHHHHHH
Q 037221 288 RELLEG----EK-GKQMRNKASEW 306 (342)
Q Consensus 288 ~~ll~~----~~-~~~~r~~a~~l 306 (342)
..++.| .+ -+++++|+++-
T Consensus 400 ~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 400 QMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred HHHHhcCCCCHHHHHHHHHhhHHH
Confidence 888873 22 13455555553
No 222
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=41.36 E-value=1.1e+02 Score=28.28 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHh-cCCCCEEEEECCCC-----------CCHHHHhCCCCCcceeeccCCch
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLA-NSNHPFLWIIRPDL-----------FPQEEVLNHPSIGGFLTHSGWGS 235 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~-~~~~~~iw~~~~~~-----------~pq~~lL~~~~~~~~ItHgG~~s 235 (342)
.+.+..|.+|+++ +.+++-+. ..+.+++..-.... .+..++|+.+++ ++.|+-.+.
T Consensus 145 gktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDv--v~lh~plt~ 212 (323)
T PRK15409 145 HKTLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDF--VCIILPLTD 212 (323)
T ss_pred CCEEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCE--EEEeCCCCh
Confidence 4667899999987 45566565 67887774322110 056777888887 777766554
No 223
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=41.21 E-value=2.6e+02 Score=24.97 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=17.2
Q ss_pred CHhHHHHHHHHHHcCChHHHHHHHHHHH
Q 037221 279 IRNVIQKSVRELLEGEKGKQMRNKASEW 306 (342)
Q Consensus 279 ~~~~l~~~i~~ll~~~~~~~~r~~a~~l 306 (342)
-.+.+.+++++++++++ |++.+++.
T Consensus 218 ~~~~l~~a~~~~~~~pe---~~~~~~~~ 242 (274)
T PF03401_consen 218 IVDKLADAIKKALEDPE---FQEFLEKM 242 (274)
T ss_dssp HHHHHHHHHHHHHT-HH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHH---HHHHHHHC
Confidence 34667788888888988 77766553
No 224
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=41.18 E-value=52 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.2
Q ss_pred cceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 225 GGFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 225 ~~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
+.+++|+|-| .+.||...++|+|++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3489998865 5669999999999984
No 225
>PRK06932 glycerate dehydrogenase; Provisional
Probab=41.05 E-value=1.1e+02 Score=28.24 Aligned_cols=55 Identities=20% Similarity=0.108 Sum_probs=35.8
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC-------CCHHHHhCCCCCcceeeccCCc
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL-------FPQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~-------~pq~~lL~~~~~~~~ItHgG~~ 234 (342)
.+.+..|.+|.++ +.+++.++..+.+++..-.... .+..++|+.+|+ ++-|+-.+
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDi--v~l~~Plt 208 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADI--VTLHCPLT 208 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCE--EEEcCCCC
Confidence 4678899999987 5566777778888764321110 156677777776 66666543
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.72 E-value=14 Score=32.81 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=35.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-CcccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-ASQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFM 71 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~ 71 (342)
.++|++| ..+|+.|+|++.++ ...+ .... -...-..|.+.+. ++|++|.|-+.
T Consensus 123 ~Ai~~~l-~~~g~sv~f~~~~el~~~Lk~~~~----------~~~~~~~l~~~l~------~~dlLIiDDlG 177 (254)
T COG1484 123 IAIGNEL-LKAGISVLFITAPDLLSKLKAAFD----------EGRLEEKLLRELK------KVDLLIIDDIG 177 (254)
T ss_pred HHHHHHH-HHcCCeEEEEEHHHHHHHHHHHHh----------cCchHHHHHHHhh------cCCEEEEeccc
Confidence 5789999 88899999999988 6666 3100 0011234455563 67999988754
No 227
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=40.51 E-value=36 Score=31.45 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred ChhhcchhhccCCCeEEEEeCCC-CCC--CC--cccCCCCCc-chh--hhHHHHHHHHHHHhhCCCCCCccEEEECCCcc
Q 037221 1 MLQLAKLPHHHKGFHITFVNFEN-KKN--MA--SQALDLKHS-RIV--FYIDHNRAFILFVNQNGNQPAVSCIISDGFMP 72 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~~~~~-~~~--~~--~~~~~~p~~-~~~--~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~ 72 (342)
|.+|++.| .++|.+|.+++.+. .+. .. ......+.- ++. ....++..+++. -|++|+. ..
T Consensus 202 ~~~l~~~l-~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~---------a~l~Vs~--DS 269 (344)
T TIGR02201 202 FSALIDAL-HARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH---------ARLFIGV--DS 269 (344)
T ss_pred HHHHHHHH-HhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh---------CCEEEec--CC
Confidence 35788899 88899999988754 321 11 000000000 111 123333444444 4899976 44
Q ss_pred hHHHHHHHhCCceEEEec
Q 037221 73 FTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 73 ~~~~~A~~lgiP~v~~~~ 90 (342)
+...+|..+|+|++.+..
T Consensus 270 Gp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 270 VPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHHHHHcCCCEEEEEC
Confidence 778899999999999865
No 228
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=40.40 E-value=99 Score=26.37 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCc------chHHHHHHHhCCceEEEe
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFM------PFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~------~~~~~~A~~lgiP~v~~~ 89 (342)
.....+.+++++. .||+|+.-.-. ..+..+|.++|.|++.=.
T Consensus 95 ~~a~al~~~i~~~-------~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv 142 (202)
T cd01714 95 ATAKALAAAIKKI-------GVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYV 142 (202)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceE
Confidence 4455555666553 58999855433 578899999999988743
No 229
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=40.31 E-value=65 Score=32.23 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=21.1
Q ss_pred cceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 225 GGFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 225 ~~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
+++++|.|-| .+.+|...++|+|++-
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3488888865 6779999999999884
No 230
>PRK06487 glycerate dehydrogenase; Provisional
Probab=40.23 E-value=1.1e+02 Score=28.27 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=36.4
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC------CCHHHHhCCCCCcceeeccCCc
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL------FPQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~------~pq~~lL~~~~~~~~ItHgG~~ 234 (342)
.+.+..+.+|.++ +.+++.++..+.+++..-.... .+..++|+.+++ ++-|+-.+
T Consensus 148 gktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDi--v~l~lPlt 208 (317)
T PRK06487 148 GKTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDA--LTLHCPLT 208 (317)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCE--EEECCCCC
Confidence 4678899999987 5667777778888764332211 156777777776 66666543
No 231
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=40.08 E-value=69 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCCCCCCccEEEE-CC-CcchHHHHHHHhCCceEEEe
Q 037221 46 NRAFILFVNQNGNQPAVSCIIS-DG-FMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 46 ~~~li~~~~~~~~~~~pD~vI~-D~-~~~~~~~~A~~lgiP~v~~~ 89 (342)
+..+.+.+.+ .++|.|++ +. -.+.|..+|..+|+|++..-
T Consensus 42 i~~~~~~~~~----~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 42 IDELAERYKD----DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHHHhcc----cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 3344444443 57999983 22 34578889999999999863
No 232
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=39.96 E-value=47 Score=32.99 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||+||.+. ....+|+++|||++.++
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 3799999886 56778999999998775
No 233
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=39.59 E-value=1.9e+02 Score=22.94 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCEEEEECCCCC-----CHHHHhCCCCCcceeeccCCc------hhHHHhhcCCcEEeccc
Q 037221 191 IEVAMGLANSNHPFLWIIRPDLF-----PQEEVLNHPSIGGFLTHSGWG------STIENLSAGVPMICWPF 251 (342)
Q Consensus 191 ~~~~~al~~~~~~~iw~~~~~~~-----pq~~lL~~~~~~~~ItHgG~~------s~~eal~~GvP~i~~P~ 251 (342)
..+++++...+.+++........ =....-..+.+ +++|.|-| .+.++...++|+|++.-
T Consensus 24 ~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 24 LPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 44556665444555544321110 11112223444 88887755 56688889999999853
No 234
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.57 E-value=32 Score=28.58 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC------------CCHHHHhCCCCCcceeeccCCchhHH
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL------------FPQEEVLNHPSIGGFLTHSGWGSTIE 238 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~------------~pq~~lL~~~~~~~~ItHgG~~s~~e 238 (342)
.+.+-.+.+|.++ +.+++.++..+.+++..-+... .+..++|+.+++ ++.|
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDi--v~~~-------- 98 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADI--VSLH-------- 98 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SE--EEE---------
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhh--hhhh--------
Confidence 4568888888887 6677888888988776543321 055556666665 5544
Q ss_pred HhhcCCcEEeccccc--chhhHHHHHHhHhceEE-Eecc----cccCCHhHHHHHHH
Q 037221 239 NLSAGVPMICWPFEG--DQMTNCRYTYKERGIGM-EING----DEDGIRNVIQKSVR 288 (342)
Q Consensus 239 al~~GvP~i~~P~~~--DQ~~na~~~~~~~G~G~-~l~~----~~~~~~~~l~~~i~ 288 (342)
+|... .+..|+..+ +.++=|. .+.. -+ +.+++.++++
T Consensus 99 ----------~plt~~T~~li~~~~l-~~mk~ga~lvN~aRG~~v--de~aL~~aL~ 142 (178)
T PF02826_consen 99 ----------LPLTPETRGLINAEFL-AKMKPGAVLVNVARGELV--DEDALLDALE 142 (178)
T ss_dssp ----------SSSSTTTTTSBSHHHH-HTSTTTEEEEESSSGGGB---HHHHHHHHH
T ss_pred ----------hccccccceeeeeeee-eccccceEEEeccchhhh--hhhHHHHHHh
Confidence 45443 567788888 7777553 3331 56 7777777664
No 235
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=39.51 E-value=1.4e+02 Score=25.30 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhCCC--CCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 42 YIDHNRAFILFVNQNGN--QPAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 42 ~~~~~~~li~~~~~~~~--~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
....++.|++.-++-.- +...++||+.-....+..-|+..|||+..+..
T Consensus 16 tGsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vip~ 66 (206)
T KOG3076|consen 16 TGSNLQALIDATRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVIPH 66 (206)
T ss_pred CchhHHHHHHhhcCCCcCCCceEEEEEeccccchhhhHHHHCCCCEEEecc
Confidence 34567888887655322 23455677887777899999999999966543
No 236
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.42 E-value=59 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEE-ECCCcchHHHHHHHhCCceEEEecchhh
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCII-SDGFMPFTIEAAQQLGLSVVMFLTISAC 94 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI-~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 94 (342)
.....+.+++++... +..++| +..-.++|..+|+++|+|.+.+.++...
T Consensus 44 ~a~~~l~~~i~~~~~-----~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 44 EAIAQLEQLIEELKP-----ENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHHHHHhCCC-----CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 445566667776532 123666 4445568888999999999988766543
No 237
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.38 E-value=1.2e+02 Score=27.31 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCEEEEE-CCC-CCC-H--HHHhCCCCCcceeeccCCchhHHHhhc-----CCcEE-eccc
Q 037221 187 KQQFIEVAMGLANSNHPFLWII-RPD-LFP-Q--EEVLNHPSIGGFLTHSGWGSTIENLSA-----GVPMI-CWPF 251 (342)
Q Consensus 187 ~~~~~~~~~al~~~~~~~iw~~-~~~-~~p-q--~~lL~~~~~~~~ItHgG~~s~~eal~~-----GvP~i-~~P~ 251 (342)
.+....+...|++.+..+.+.. ... +.. . ...-..+++ +|.-||-||+.|++.. ..|.+ ++|.
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3445556666666665543322 221 111 1 111122344 9999999999996542 34555 4885
No 238
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=39.31 E-value=45 Score=32.16 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 44 DHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 44 ~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
..+.+++++ .+||++|.+. ....+|+++|||++.+.
T Consensus 362 ~e~~~~l~~-------~~~dliiG~s---~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKE-------LKIDVLIGNS---YGRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHh-------cCCCEEEECc---hhHHHHHHcCCCEEEec
Confidence 344555555 4799999997 45789999999998763
No 239
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.00 E-value=53 Score=31.62 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=22.6
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
.+||++|.+. ....+|+++|+|++.++.
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 4899999997 455678999999988753
No 240
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.97 E-value=47 Score=32.88 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=23.5
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
.+||+||.+. ....+|+++|||++.++.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 4799999996 677789999999987753
No 241
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=38.72 E-value=29 Score=29.94 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCCCCCccEEEECCCcch-------HHHHHHHhCCceEEEecch
Q 037221 46 NRAFILFVNQNGNQPAVSCIISDGFMPF-------TIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 46 ~~~li~~~~~~~~~~~pD~vI~D~~~~~-------~~~~A~~lgiP~v~~~~~~ 92 (342)
+..+++++. ..||+|+.|.+... |..+.-.+++|+|.+.-..
T Consensus 83 l~~~~~~l~-----~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~~ 131 (208)
T cd06559 83 LLEALEKLK-----TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSL 131 (208)
T ss_pred HHHHHHhCC-----CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEccc
Confidence 555566654 47999999986553 3334446678888875433
No 242
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.54 E-value=1.6e+02 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=38.2
Q ss_pred CCCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 220 NHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 220 ~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
..+++ +|+=||-||++.++. .++|++.+... ++ |-.- .+ .++++.+++.++++++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G------------~l--GFL~--~~--~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG------------HV--GFLA--EA--EAEDLDEAVERVVDRD 129 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC------------CC--ceec--cC--CHHHHHHHHHHHHcCC
Confidence 34566 999999999999876 47888877541 11 1111 34 6788888888888754
No 243
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=38.40 E-value=51 Score=25.83 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=27.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhc--CCCCEEEEEC
Q 037221 173 SVIYVNFGIAIVVKKQQFIEVAMGLAN--SNHPFLWIIR 209 (342)
Q Consensus 173 ~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~iw~~~ 209 (342)
.+++++|||......+.+..+.+.+++ .+..+-|.+.
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 589999999987556778888888754 3457777764
No 244
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.05 E-value=1.5e+02 Score=27.13 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=37.7
Q ss_pred CCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 221 HPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.+++ +|+=||-||+++++. .++|++.+... ++| -+ ..+ +++++.+++.++++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~lG---Fl-~~~--~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------RLG---FL-TDI--RPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------ccc---cc-ccC--CHHHHHHHHHHHHcCC
Confidence 4555 999999999999975 46788777541 111 11 135 7888888898888754
No 245
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.01 E-value=53 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=20.6
Q ss_pred CCccEEEECCCcch--HHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPF--TIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~--~~~~A~~lgiP~v~~~ 89 (342)
-+||+||....... ...--+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 38999997653322 3344567899998875
No 246
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=37.87 E-value=1.9e+02 Score=26.50 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=33.4
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEEC-CCCC----------CHHHHhCCCCCcceeeccCCch
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIR-PDLF----------PQEEVLNHPSIGGFLTHSGWGS 235 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~-~~~~----------pq~~lL~~~~~~~~ItHgG~~s 235 (342)
.+.+.+|.+|+++ +.+++-+...|.+++..-. .... ...++++.+++ ++.|.-.+.
T Consensus 136 g~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDv--vv~~lPlt~ 202 (312)
T PRK15469 136 DFTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRV--LINLLPNTP 202 (312)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCE--EEECCCCCH
Confidence 4567889999987 5566777777887653221 1100 23555666666 666555443
No 247
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=37.37 E-value=23 Score=30.83 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=43.5
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C---cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A---SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIE 76 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~---~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~ 76 (342)
.+|++.| .++|.+|.|+.++. .+.. . ......+.-++ .....+.++..-+. +-|++|+- ..+..-
T Consensus 127 ~~l~~~l-~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~e~~ali~------~a~~~I~~--Dtg~~H 196 (247)
T PF01075_consen 127 AELIERL-KERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINL-AGKTSLRELAALIS------RADLVIGN--DTGPMH 196 (247)
T ss_dssp HHHHHHH-CCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEE-TTTS-HHHHHHHHH------TSSEEEEE--SSHHHH
T ss_pred HHHHHHH-HhhCceEEEEccchHHHHHHHHHHHHhcccceEee-cCCCCHHHHHHHHh------cCCEEEec--CChHHH
Confidence 5788999 99998888888766 3211 1 01100000011 11123444444443 35899955 337788
Q ss_pred HHHHhCCceEEEecch
Q 037221 77 AAQQLGLSVVMFLTIS 92 (342)
Q Consensus 77 ~A~~lgiP~v~~~~~~ 92 (342)
+|..+|+|++.+....
T Consensus 197 lA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 197 LAAALGTPTVALFGPT 212 (247)
T ss_dssp HHHHTT--EEEEESSS
T ss_pred HHHHHhCCEEEEecCC
Confidence 9999999999987544
No 248
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=37.24 E-value=97 Score=28.85 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCCcceeeccCCchhHHHhhcCCcEEec
Q 037221 221 HPSIGGFLTHSGWGSTIENLSAGVPMICW 249 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~~GvP~i~~ 249 (342)
.+++ +|++|+.-...-|...|+|.|.+
T Consensus 83 ~pDv--~is~~s~~a~~va~~lgiP~I~f 109 (335)
T PF04007_consen 83 KPDV--AISFGSPEAARVAFGLGIPSIVF 109 (335)
T ss_pred CCCE--EEecCcHHHHHHHHHhCCCeEEE
Confidence 5777 99999877777788888888765
No 249
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.19 E-value=78 Score=29.02 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEECCCCC---CH--HHHhCCCCCcceeeccCCchhHHHhh----cCCcEEeccc
Q 037221 188 QQFIEVAMGLANSNHPFLWIIRPDLF---PQ--EEVLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPF 251 (342)
Q Consensus 188 ~~~~~~~~al~~~~~~~iw~~~~~~~---pq--~~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~ 251 (342)
+.+..+.+.|++.+..+.+....... .+ ...-..+++ +|+-||-||+++++. .++|++.+..
T Consensus 19 ~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 19 EAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 34455555666666665443211100 11 111223455 999999999999986 3788887764
No 250
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=37.05 E-value=62 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.6
Q ss_pred CccEEE-ECCCcc-hHHHHHHHhCCceEEEecchhhH
Q 037221 61 AVSCII-SDGFMP-FTIEAAQQLGLSVVMFLTISACS 95 (342)
Q Consensus 61 ~pD~vI-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~ 95 (342)
-||+++ .|+..- -|..=|.++|||++.+.-+.+-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 399985 777333 67778999999999987555443
No 251
>PRK11519 tyrosine kinase; Provisional
Probab=36.61 E-value=1.3e+02 Score=31.16 Aligned_cols=82 Identities=7% Similarity=0.095 Sum_probs=50.9
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C----cc--c----CCC-------------------CCcchh------hhHH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A----SQ--A----LDL-------------------KHSRIV------FYID 44 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~----~~--~----~~~-------------------p~~~~~------~~~~ 44 (342)
..||..| +..|++|.++...- .+.+ . .. + +.+ |.+..+ ....
T Consensus 545 ~nLA~~l-a~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~ell~s~ 623 (719)
T PRK11519 545 ANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSE 623 (719)
T ss_pred HHHHHHH-HhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCEEEEeCCCCCCCHHHHhhHH
Confidence 4689999 99999999998765 5544 2 10 0 000 111111 3456
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcc----hHHHHHHHhCCceEEEe
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMP----FTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~----~~~~~A~~lgiP~v~~~ 89 (342)
.+.++++.+++ ++|+||.|.-.. -+..+|...+...+++-
T Consensus 624 ~~~~ll~~l~~-----~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 624 RFAELVNWASK-----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred HHHHHHHHHHh-----cCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 68888998864 799999996322 24556666666655543
No 252
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=36.29 E-value=75 Score=26.14 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=26.3
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEE
Q 037221 174 VIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWII 208 (342)
Q Consensus 174 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~ 208 (342)
.+|+++||-.....+.++..+.+|...+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999987667778888888888765334433
No 253
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=36.28 E-value=45 Score=32.12 Aligned_cols=28 Identities=14% Similarity=-0.039 Sum_probs=22.9
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
.+||++|.... ...+|+++|||+..+..
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 38999999874 66789999999987653
No 254
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=36.14 E-value=1.4e+02 Score=27.48 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-C----C---CHHHHhCCCCCcceeeccCCchhHHHhhc
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD-L----F---PQEEVLNHPSIGGFLTHSGWGSTIENLSA 242 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~-~----~---pq~~lL~~~~~~~~ItHgG~~s~~eal~~ 242 (342)
.+.+..|.+|.++ +.+++-++..+.+++..-... . . +..++|+.+|+ ++-|+
T Consensus 145 gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDv--v~lh~----------- 204 (311)
T PRK08410 145 GKKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDI--ISIHA----------- 204 (311)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCE--EEEeC-----------
Confidence 5678999999987 455666666787766432111 0 0 56777777776 55554
Q ss_pred CCcEEeccccc--chhhHHHHHHhHhceEEEe-c--c--cccCCHhHHHHHHH
Q 037221 243 GVPMICWPFEG--DQMTNCRYTYKERGIGMEI-N--G--DEDGIRNVIQKSVR 288 (342)
Q Consensus 243 GvP~i~~P~~~--DQ~~na~~~~~~~G~G~~l-~--~--~~~~~~~~l~~~i~ 288 (342)
|... ....|+..+ +.++=|..+ . + -+ +.+.|.++++
T Consensus 205 -------Plt~~T~~li~~~~~-~~Mk~~a~lIN~aRG~vV--De~AL~~AL~ 247 (311)
T PRK08410 205 -------PLNEKTKNLIAYKEL-KLLKDGAILINVGRGGIV--NEKDLAKALD 247 (311)
T ss_pred -------CCCchhhcccCHHHH-HhCCCCeEEEECCCcccc--CHHHHHHHHH
Confidence 5432 345566666 566555333 2 1 45 5566665554
No 255
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.07 E-value=38 Score=31.34 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=48.7
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C-cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAA 78 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A 78 (342)
.+|++.| .++|.+|.++.++. .+.. + ......+.. + .....+.++..-+. +-|++|+. ..+...+|
T Consensus 198 ~~l~~~l-~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~-l-~~k~sL~e~~~li~------~a~l~I~~--DSg~~HlA 266 (334)
T COG0859 198 AELAELL-IAKGYQVVLFGGPDEEERAEEIAKGLPNAVI-L-AGKTSLEELAALIA------GADLVIGN--DSGPMHLA 266 (334)
T ss_pred HHHHHHH-HHCCCEEEEecChHHHHHHHHHHHhcCCccc-c-CCCCCHHHHHHHHh------cCCEEEcc--CChHHHHH
Confidence 4688999 99999999999877 6554 3 111110000 0 11122333333332 34898865 34678899
Q ss_pred HHhCCceEEEecch
Q 037221 79 QQLGLSVVMFLTIS 92 (342)
Q Consensus 79 ~~lgiP~v~~~~~~ 92 (342)
..+|.|+|.+....
T Consensus 267 aA~~~P~I~iyg~t 280 (334)
T COG0859 267 AALGTPTIALYGPT 280 (334)
T ss_pred HHcCCCEEEEECCC
Confidence 99999999987544
No 256
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.06 E-value=75 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=18.2
Q ss_pred CHhHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 037221 279 IRNVIQKSVRELLEG-EKGKQMRNKASEW 306 (342)
Q Consensus 279 ~~~~l~~~i~~ll~~-~~~~~~r~~a~~l 306 (342)
+++++..||..+.++ -+ +++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 468899999999977 44 77776654
No 257
>PRK13055 putative lipid kinase; Reviewed
Probab=35.57 E-value=1.4e+02 Score=27.58 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEE-ECCC--CC---CHHHHhCCCCCcceeeccCCchhHHHhhc------CCcEEeccc
Q 037221 187 KQQFIEVAMGLANSNHPFLWI-IRPD--LF---PQEEVLNHPSIGGFLTHSGWGSTIENLSA------GVPMICWPF 251 (342)
Q Consensus 187 ~~~~~~~~~al~~~~~~~iw~-~~~~--~~---pq~~lL~~~~~~~~ItHgG~~s~~eal~~------GvP~i~~P~ 251 (342)
.+.+..+...|+..+..+.+. .... +. -+.......++ +|--||-||+.|++.. .+|+-++|.
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~--vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDL--IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCE--EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 344556666676666654432 2211 11 01111223344 9999999999998742 467888996
No 258
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.24 E-value=1.1e+02 Score=26.19 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037221 282 VIQKSVRELLEGE-KGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNE 330 (342)
Q Consensus 282 ~l~~~i~~ll~~~-~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~ 330 (342)
-+..-+++++.|- +-+++++.++++++++++|.++|.- +.++++-++
T Consensus 59 l~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~--~~lkkLq~~ 106 (201)
T COG1422 59 LYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDM--KKLKKLQEK 106 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 3444555666654 3467999999999999998766665 566665443
No 259
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=35.23 E-value=1.2e+02 Score=25.71 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCccEEEEC-C-CcchHHHHHHHhCCceEEEec
Q 037221 60 PAVSCIISD-G-FMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 60 ~~pD~vI~D-~-~~~~~~~~A~~lgiP~v~~~~ 90 (342)
.++|+|++= . -.+.|..+|..+|+|++.+-.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 578999832 2 345888899999999998753
No 260
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=34.93 E-value=48 Score=29.70 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=24.3
Q ss_pred ceEEEEecccccCC-HHHHHHHHHHHhc--CCCCEEEEECC
Q 037221 173 SVIYVNFGIAIVVK-KQQFIEVAMGLAN--SNHPFLWIIRP 210 (342)
Q Consensus 173 ~~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~iw~~~~ 210 (342)
.+++|||||..... ...+..+.+.++. .++.+.|.+.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 47999999997554 3377777777765 47899999865
No 261
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=34.85 E-value=59 Score=32.27 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.7
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||++|.+. .+..+|+++|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 4899999986 56788999999998764
No 262
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=34.44 E-value=72 Score=28.96 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=39.3
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCCCCcccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEE--CC---CcchHHH
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKNMASQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIIS--DG---FMPFTIE 76 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~--D~---~~~~~~~ 76 (342)
.+.++| .++||+|.++.... ..... ..+.+.+.++. ....++|+|+. +. .......
T Consensus 22 ~i~~al-~~~g~~v~~i~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~D~v~~~~~g~~~~~~~~~~ 83 (315)
T TIGR01205 22 AVLKAL-RDLGYDVYPVDIDKMGSWTY---------------KDLPQLILELG--ALLEGIDVVFPVLHGRYGEDGTIQG 83 (315)
T ss_pred HHHHHH-hhcCCEEEEEeecCCccccc---------------cchHHHHhhcc--ccCCCCCEEEEecCCCCCCCcHHHH
Confidence 567889 99999999998755 32210 01112121110 11147899985 21 1234566
Q ss_pred HHHHhCCceEE
Q 037221 77 AAQQLGLSVVM 87 (342)
Q Consensus 77 ~A~~lgiP~v~ 87 (342)
+++.+|||++.
T Consensus 84 ~le~~gip~~g 94 (315)
T TIGR01205 84 LLELMGIPYTG 94 (315)
T ss_pred HHHHcCCCccC
Confidence 78899999986
No 263
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=34.35 E-value=4e+02 Score=25.04 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=52.9
Q ss_pred CHHHHhCCCCCcceeec--cCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc-cccCCHhHHHHHHHHH
Q 037221 214 PQEEVLNHPSIGGFLTH--SGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-DEDGIRNVIQKSVREL 290 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-~~~~~~~~l~~~i~~l 290 (342)
.+..+|+.|+++-|.+. =|.|++.-.+..|+|++.-- +-.--+.+ .+.|+-+.-.. .+ +...|.++=+++
T Consensus 258 eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l-~~~~ipVlf~~d~L--~~~~v~ea~rql 330 (360)
T PF07429_consen 258 EYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDL-KEQGIPVLFYGDEL--DEALVREAQRQL 330 (360)
T ss_pred HHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHH-HhCCCeEEeccccC--CHHHHHHHHHHH
Confidence 67789999999666654 58999999999999997642 22233445 56677665553 78 888888888877
Q ss_pred Hc
Q 037221 291 LE 292 (342)
Q Consensus 291 l~ 292 (342)
..
T Consensus 331 ~~ 332 (360)
T PF07429_consen 331 AN 332 (360)
T ss_pred hh
Confidence 54
No 264
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=34.06 E-value=1.4e+02 Score=24.36 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcc---hHHHHHHHhCCceEEEecch
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMP---FTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 92 (342)
.....+.+++++. +||+|+...-.. .+..+|.++|.|++.-....
T Consensus 70 ~~a~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 70 PYAPALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 4445555555553 689999654332 67889999999999865433
No 265
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=33.97 E-value=71 Score=30.65 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=44.3
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-Cc--ccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-AS--QALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEA 77 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~--~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~ 77 (342)
+.+++.| .+-|-+|..+.+.. .... ++ .........+ .....+.+.+..+++ .+||++|... .+..+
T Consensus 293 ~~la~~L-~elGmevv~~~t~~~~~~~~~~~~~~l~~~~~~v-~~~~~~~~~~~~~~~----~~pDl~Ig~s---~~~~~ 363 (416)
T cd01980 293 LLVARLL-IESGAEVPYVSTSIPKTSLSAPDYEWLSALGVEV-RYRKSLEDDIAAVEE----YRPDLAIGTT---PLVQY 363 (416)
T ss_pred HHHHHHH-HHcCCEEEEEecCCCChhhhHHHHHHHHhcCCcc-ccCCCHHHHHHHHhh----cCCCEEEeCC---hhhHH
Confidence 4567778 88888888887764 3322 20 0000000000 011222222333322 4899999884 57779
Q ss_pred HHHhCCceEEEe
Q 037221 78 AQQLGLSVVMFL 89 (342)
Q Consensus 78 A~~lgiP~v~~~ 89 (342)
|+++|||++.+.
T Consensus 364 a~~~giP~~r~~ 375 (416)
T cd01980 364 AKEKGIPALYYT 375 (416)
T ss_pred HHHhCCCEEEec
Confidence 999999998864
No 266
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.82 E-value=1.4e+02 Score=26.67 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCchhHHHhhc-----CCcEEecccccchhhHHHHHH
Q 037221 189 QFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLSA-----GVPMICWPFEGDQMTNCRYTY 263 (342)
Q Consensus 189 ~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~-----GvP~i~~P~~~DQ~~na~~~~ 263 (342)
..+.+.+-|++.+..+... +..+++ +|+=||-||++.++.. .+|++.+-..+
T Consensus 18 ~~~~l~~~l~~~g~~~~~~-----------~~~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G---------- 74 (264)
T PRK03501 18 KVKPLKKIAEEYGFTVVDH-----------PKNANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD---------- 74 (264)
T ss_pred HHHHHHHHHHHCCCEEEcC-----------CCCccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC----------
Confidence 3444555566666554421 123455 9999999999999874 45655543200
Q ss_pred hHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 264 KERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 264 ~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.+|- + ..+ +++++.+++.++++++
T Consensus 75 ---~lGF-L-~~~--~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 75 ---QLGF-Y-CDF--HIDDLDKMIQAITKEE 98 (264)
T ss_pred ---CCeE-c-ccC--CHHHHHHHHHHHHcCC
Confidence 0111 1 135 7788888888887654
No 267
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=33.81 E-value=5.1e+02 Score=26.14 Aligned_cols=135 Identities=10% Similarity=0.139 Sum_probs=76.2
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHh------CCCCCcceeeccCCchhHHHhh---
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVL------NHPSIGGFLTHSGWGSTIENLS--- 241 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL------~~~~~~~~ItHgG~~s~~eal~--- 241 (342)
+.+.|-|-+||.. .....++....|+..+.++-..+-+.+.-...+. ....++.||.=.|.-.-+-.+.
T Consensus 409 ~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~ 486 (577)
T PLN02948 409 GTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASM 486 (577)
T ss_pred CCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhc
Confidence 4566777788875 5577788888899888887666655554112221 1122334999888654444433
Q ss_pred cCCcEEecccccch--hhHH-HHHHhHh--ceEEE---ecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Q 037221 242 AGVPMICWPFEGDQ--MTNC-RYTYKER--GIGME---INGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEA 313 (342)
Q Consensus 242 ~GvP~i~~P~~~DQ--~~na-~~~~~~~--G~G~~---l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a 313 (342)
--+|+|.+|....- -..+ .-+ -.+ |+.+. ++... +...+...|-. +.|+. ++++.+..++.+++.
T Consensus 487 t~~pvi~vp~~~~~~~g~~~l~s~-~~~p~g~pv~~v~i~~~~--~aa~~a~~i~~-~~~~~---~~~~~~~~~~~~~~~ 559 (577)
T PLN02948 487 TPLPVIGVPVKTSHLDGLDSLLSI-VQMPRGVPVATVAIGNAT--NAGLLAVRMLG-ASDPD---LLDKMEAYQEDMRDM 559 (577)
T ss_pred cCCCEEEcCCCCCCCCcHHHHHHH-hcCCCCCeEEEEecCChH--HHHHHHHHHHh-cCCHH---HHHHHHHHHHHHHHH
Confidence 35899999985321 1222 223 234 43211 22222 33333332211 34555 888888888888874
Q ss_pred c
Q 037221 314 A 314 (342)
Q Consensus 314 ~ 314 (342)
+
T Consensus 560 ~ 560 (577)
T PLN02948 560 V 560 (577)
T ss_pred H
Confidence 3
No 268
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=33.80 E-value=23 Score=29.91 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.2
Q ss_pred hhcchhhccCCCeEEEEeCCC
Q 037221 3 QLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
.||+.+ ..+|++||++..+.
T Consensus 34 ~lA~~~-~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 34 ALAEEA-ARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHH-HHTT-EEEEEE-TT
T ss_pred HHHHHH-HHCCCEEEEEecCc
Confidence 688999 99999999999975
No 269
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=33.03 E-value=92 Score=26.25 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=17.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
..||..| +++|++|.++-...
T Consensus 36 ~~LA~~l-a~~G~rVllID~D~ 56 (204)
T TIGR01007 36 ANIAVAF-AQAGYKTLLIDGDM 56 (204)
T ss_pred HHHHHHH-HhCCCeEEEEeCCC
Confidence 4688999 99999999987554
No 270
>PRK13337 putative lipid kinase; Reviewed
Probab=32.91 E-value=1.7e+02 Score=26.51 Aligned_cols=62 Identities=13% Similarity=-0.015 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCEEEE-ECCC-CC-C--HHHHhCCCCCcceeeccCCchhHHHhh--c----CCcEEeccc
Q 037221 188 QQFIEVAMGLANSNHPFLWI-IRPD-LF-P--QEEVLNHPSIGGFLTHSGWGSTIENLS--A----GVPMICWPF 251 (342)
Q Consensus 188 ~~~~~~~~al~~~~~~~iw~-~~~~-~~-p--q~~lL~~~~~~~~ItHgG~~s~~eal~--~----GvP~i~~P~ 251 (342)
+....+...|+..+..+.+. +... +. . ....-...+ .+|.-||-||+.|++. . ..|+-++|.
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d--~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFD--LVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCC--EEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 34555666677766655432 2211 11 0 111112234 4999999999999875 2 347788995
No 271
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.60 E-value=1.5e+02 Score=26.46 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred hcchhhccCCCeEEEEeCCC-CCCCCcccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECC-C-----cchHHH
Q 037221 4 LAKLPHHHKGFHITFVNFEN-KKNMASQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDG-F-----MPFTIE 76 (342)
Q Consensus 4 la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~-~-----~~~~~~ 76 (342)
||+.| .++|++|..+++-. . ...+.+.++...+ ++|+||+.. . ......
T Consensus 26 la~~L-~~~G~~v~~~~~VgD~------------------~~~I~~~l~~a~~-----r~D~vI~tGGLGPT~DDiT~e~ 81 (255)
T COG1058 26 LADEL-TELGVDLARITTVGDN------------------PDRIVEALREASE-----RADVVITTGGLGPTHDDLTAEA 81 (255)
T ss_pred HHHHH-HhcCceEEEEEecCCC------------------HHHHHHHHHHHHh-----CCCEEEECCCcCCCccHhHHHH
Confidence 78889 99999998888632 2 3344455555443 589999643 1 225678
Q ss_pred HHHHhCCceEEE
Q 037221 77 AAQQLGLSVVMF 88 (342)
Q Consensus 77 ~A~~lgiP~v~~ 88 (342)
+|+.+|.|++.-
T Consensus 82 vAka~g~~lv~~ 93 (255)
T COG1058 82 VAKALGRPLVLD 93 (255)
T ss_pred HHHHhCCCcccC
Confidence 999999999974
No 272
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=32.43 E-value=67 Score=29.96 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=72.0
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC--CHHHHhCCC--CCcceeeccCCchh
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF--PQEEVLNHP--SIGGFLTHSGWGST 236 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~--pq~~lL~~~--~~~~~ItHgG~~s~ 236 (342)
+..+.-.+.+++.+||++-|-... .+.....+.++.++--.+|-....-... -...+|..+ ++.+||.-|=-.++
T Consensus 115 dAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hk~~ppal~~ll~~~~~~idGfi~PGHVs~I 193 (355)
T PF01924_consen 115 DALKIAKENPDKEVVFFAVGFETT-APATAAAILQAKEEGIKNFSVLSSHKLTPPALEALLEDPELKIDGFICPGHVSTI 193 (355)
T ss_dssp HHHHHHHH-TTSEEEEEEEE-HHH-HHHHHHHHHHHHHHT-SSEEEEEEEE-CHHHHHHHHHTT----SEEEEEHHHHHH
T ss_pred HHHHHHHhCCCCceEEEEeCcccC-cHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEeCCeeeEE
Confidence 345556667889999999887653 2333444555655544444332211112 356677665 67888887644333
Q ss_pred HHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCC
Q 037221 237 IENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAP 316 (342)
Q Consensus 237 ~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~ 316 (342)
.-+ . .+.... ++.|.-..+.+ + .+.+|..+|..++.. +.++-.++......++.+
T Consensus 194 ~G~---------------~-~y~~l~-~~y~~P~vIaG-F--Ep~diL~ai~~lv~q-----i~~g~~~v~N~Y~r~V~~ 248 (355)
T PF01924_consen 194 IGS---------------E-PYEFLA-EEYGIPCVIAG-F--EPLDILQAIYMLVKQ-----INEGEAEVENQYPRVVKP 248 (355)
T ss_dssp HCC---------------H-HHHHHH-HCC---EEEE--S--SHHHHHHHHHHHHHH-----HHTT---EEES-TTT--T
T ss_pred ecc---------------h-hhHHHH-HHcCCCeEEcC-C--CHHHHHHHHHHHHHH-----HHCCCCeEEEecceeeCC
Confidence 211 1 122223 56666666653 6 788888888777641 333333444445455556
Q ss_pred CCchHHHHHHHHHHHhC
Q 037221 317 DGPSSKNLVKLVNESLL 333 (342)
Q Consensus 317 ~g~~~~~~~~~i~~l~~ 333 (342)
.|. ..+.++++++.+
T Consensus 249 eGN--~~A~~~i~evFe 263 (355)
T PF01924_consen 249 EGN--PKAQELINEVFE 263 (355)
T ss_dssp T----HHHHHHHHHHEE
T ss_pred ccC--HHHHHHHHHHhC
Confidence 666 567777777654
No 273
>PRK13054 lipid kinase; Reviewed
Probab=32.29 E-value=1.4e+02 Score=26.97 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEECC--CCC-C--HHHHhCCCCCcceeeccCCchhHHHhhc------C--CcEEeccc
Q 037221 188 QQFIEVAMGLANSNHPFLWIIRP--DLF-P--QEEVLNHPSIGGFLTHSGWGSTIENLSA------G--VPMICWPF 251 (342)
Q Consensus 188 ~~~~~~~~al~~~~~~~iw~~~~--~~~-p--q~~lL~~~~~~~~ItHgG~~s~~eal~~------G--vP~i~~P~ 251 (342)
+.+..+...|++.+..+...... .+. . ........++ +|.-||-||+.|.+.. + +|+-++|.
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~--vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVAT--VIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCE--EEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 45555666777776665433321 111 1 1122233444 9999999999998754 3 58888996
No 274
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.27 E-value=84 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||++|... ....+|+++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 4799999986 46888999999998764
No 275
>smart00096 UTG Uteroglobin.
Probab=32.26 E-value=1.2e+02 Score=21.14 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=35.4
Q ss_pred cCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 037221 277 DGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLL 333 (342)
Q Consensus 277 ~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~ 333 (342)
.|+++.....+...-.|++ +.+++.++++-.-. ..++.. ..+..+++++..
T Consensus 15 ~gt~~~Y~~~l~~y~~~~~---~~ea~~~lK~cvD~-L~~~~k--~~i~~ll~kI~~ 65 (69)
T smart00096 15 LGTPSSYEASLKQFKPDPD---MLEAGRQLKKLVDT-LPQETR--ENILKLTEKIYT 65 (69)
T ss_pred cCCHHHHHHHHHhcCCCHH---HHHHHHHHHHHHhc-CCHHHH--HHHHHHHHHHHc
Confidence 3588889999988888887 88888887766554 222333 566777776643
No 276
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=32.21 E-value=68 Score=30.92 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=43.8
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C-cc-cCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQ-ALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEA 77 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~-~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~ 77 (342)
+.+++.| .+-|-+|..+.+.. .... + .. ..+.-...+ .....+.+.++.+++ .+||++|... -+..+
T Consensus 298 ~~l~~~l-~elGmevv~~~t~~~~~~~~~~~~~~~~~~~~~v-~~~~dl~~~~~~l~~----~~pDllig~s---~~~~~ 368 (422)
T TIGR02015 298 LLVVRLL-LESGADVPYVGTAIPRTAWGAEDKRWLEMLGVEV-KYRASLEDDMEAVLE----FEPDLAIGTT---PLVQF 368 (422)
T ss_pred HHHHHHH-HHCCCEEEEEecCCCCccccHHHHHHHHhcCCCc-eeccCHHHHHHHHhh----CCCCEEEcCC---cchHH
Confidence 4567777 78888888886654 3222 2 00 000000000 001122222233332 5899999885 46668
Q ss_pred HHHhCCceEEEe
Q 037221 78 AQQLGLSVVMFL 89 (342)
Q Consensus 78 A~~lgiP~v~~~ 89 (342)
|+++|||++.+.
T Consensus 369 A~k~gIP~vr~g 380 (422)
T TIGR02015 369 AKEHGIPALYFT 380 (422)
T ss_pred HHHcCCCEEEec
Confidence 999999999864
No 277
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=32.13 E-value=38 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=15.8
Q ss_pred cCCchhHHH---hhcCCcEEecccc
Q 037221 231 SGWGSTIEN---LSAGVPMICWPFE 252 (342)
Q Consensus 231 gG~~s~~ea---l~~GvP~i~~P~~ 252 (342)
.+.||..|. .+.|+|++++-.-
T Consensus 74 ~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 74 PDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp --HHHHHHHHHHHHTTSEEEEEECC
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 478999986 6689999987543
No 278
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=31.85 E-value=2.1e+02 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.488 Sum_probs=27.6
Q ss_pred CHHHHhCCCCCcceeeccC-----CchhHHH---hhcCCcEEecc
Q 037221 214 PQEEVLNHPSIGGFLTHSG-----WGSTIEN---LSAGVPMICWP 250 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG-----~~s~~ea---l~~GvP~i~~P 250 (342)
.-..++..+++ +|-.-| ||+.+.| .+.|+|+|++-
T Consensus 68 RT~~li~~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~lh 110 (144)
T TIGR03646 68 RTRKLIEKADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIILR 110 (144)
T ss_pred HHHHHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 45667888998 888888 8887765 66899998864
No 279
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=31.60 E-value=1.3e+02 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCC---------cchHHHHHHHhCCceEEEecch
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGF---------MPFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~---------~~~~~~~A~~lgiP~v~~~~~~ 92 (342)
.+.+.++++.+ +.|+||.|.. .....+++..++.|.+.+....
T Consensus 88 ~i~~~~~~l~~-----~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~ 139 (166)
T TIGR00347 88 ELSKHLRTLEQ-----KYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVK 139 (166)
T ss_pred HHHHHHHHHHh-----cCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCC
Confidence 45666666653 6899998863 1256678999999998887543
No 280
>PRK13057 putative lipid kinase; Reviewed
Probab=31.47 E-value=1.4e+02 Score=26.82 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.0
Q ss_pred hCCCCCcceeeccCCchhHHHhh----cCCcEEeccc
Q 037221 219 LNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPF 251 (342)
Q Consensus 219 L~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~ 251 (342)
....++ +|.-||-||+.|++. .++|+-++|.
T Consensus 48 ~~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 48 ADGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred HcCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 334455 999999999998852 5789999995
No 281
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=31.30 E-value=21 Score=27.80 Aligned_cols=21 Identities=10% Similarity=0.244 Sum_probs=15.5
Q ss_pred hhhcchhhccCCCeEEEEeCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
++|+++. ++|||+|.+++..+
T Consensus 21 ~alm~eA-q~RGhev~~~~~~d 41 (119)
T PF02951_consen 21 FALMLEA-QRRGHEVFYYEPGD 41 (119)
T ss_dssp HHHHHHH-HHTT-EEEEE-GGG
T ss_pred HHHHHHH-HHCCCEEEEEEcCc
Confidence 3577788 88999999999876
No 282
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.01 E-value=3.2e+02 Score=27.51 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=21.7
Q ss_pred CcceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 224 IGGFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 224 ~~~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34489998855 6779999999999884
No 283
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.00 E-value=58 Score=29.68 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=44.5
Q ss_pred ChhhcchhhccCCCeEEEE-eCCC-CCCC-C-cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHH
Q 037221 1 MLQLAKLPHHHKGFHITFV-NFEN-KKNM-A-SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIE 76 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~-~~~~-~~~~-~-~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~ 76 (342)
|.+|++.| .++|.++.++ +++. .+.. . .... +..++ .....+.++..-++ +-|++|+. ..+...
T Consensus 200 ~~~l~~~l-~~~~~~~vl~~g~~~e~~~~~~i~~~~--~~~~l-~g~~sL~el~ali~------~a~l~I~~--DSgp~H 267 (319)
T TIGR02193 200 WRELARLL-LARGLQIVLPWGNDAEKQRAERIAEAL--PGAVV-LPKMSLAEVAALLA------GADAVVGV--DTGLTH 267 (319)
T ss_pred HHHHHHHH-HHCCCeEEEeCCCHHHHHHHHHHHhhC--CCCee-cCCCCHHHHHHHHH------cCCEEEeC--CChHHH
Confidence 35788888 8889888877 4333 3322 1 0000 00011 01113344444442 34899966 346788
Q ss_pred HHHHhCCceEEEec
Q 037221 77 AAQQLGLSVVMFLT 90 (342)
Q Consensus 77 ~A~~lgiP~v~~~~ 90 (342)
+|..+|+|++.+..
T Consensus 268 lAaa~g~P~i~lfg 281 (319)
T TIGR02193 268 LAAALDKPTVTLYG 281 (319)
T ss_pred HHHHcCCCEEEEEC
Confidence 89999999999864
No 284
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=30.93 E-value=22 Score=31.36 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=16.2
Q ss_pred hhcchhhccCCCeEEEEeCCC
Q 037221 3 QLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
.|+++| +++||+|+++++..
T Consensus 24 ~L~kaL-~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 24 SLPKAL-AKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHH-HHTT-EEEEEEE-T
T ss_pred HHHHHH-HhcCCeEEEEEccc
Confidence 588999 99999999999764
No 285
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.78 E-value=1.2e+02 Score=26.95 Aligned_cols=83 Identities=8% Similarity=0.135 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCchhHHHhh-cCCcEEecccccchhhHHHHHHhH
Q 037221 187 KQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLS-AGVPMICWPFEGDQMTNCRYTYKE 265 (342)
Q Consensus 187 ~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~-~GvP~i~~P~~~DQ~~na~~~~~~ 265 (342)
.+..+++.+-|.+.+..+.|..... + --..+++ +|+=||-||++.++. +++|++.+-...
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~--~---~~~~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G~------------ 72 (256)
T PRK14075 12 EKEAKFLKEKISKEHEVVEFCEASA--S---GKVTADL--IIVVGGDGTVLKAAKKVGTPLVGFKAGR------------ 72 (256)
T ss_pred HHHHHHHHHHHHHcCCeeEeecccc--c---ccCCCCE--EEEECCcHHHHHHHHHcCCCEEEEeCCC------------
Confidence 3555666667777777777764321 1 1134455 999999999999977 577776653210
Q ss_pred hceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 266 RGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 266 ~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
+|-.. .+ +++++.+++.++++++
T Consensus 73 --lGfl~--~~--~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 73 --LGFLS--SY--TLEEIDRFLEDLKNWN 95 (256)
T ss_pred --Ccccc--cc--CHHHHHHHHHHHHcCC
Confidence 11111 35 6777888888877654
No 286
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=30.30 E-value=1.8e+02 Score=23.01 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=30.2
Q ss_pred HhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEE
Q 037221 166 LDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWII 208 (342)
Q Consensus 166 l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~ 208 (342)
.+......+|++.+||-.....+.++.+++.+. .+.++++..
T Consensus 45 ~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~ 86 (150)
T cd01840 45 KDSGKLRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVN 86 (150)
T ss_pred HHcCCCCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEE
Confidence 333334578999999988767788888888875 356777654
No 287
>PRK07574 formate dehydrogenase; Provisional
Probab=30.19 E-value=2.6e+02 Score=26.67 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=37.3
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC---C----------CCHHHHhCCCCCcceeeccCCchhH
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD---L----------FPQEEVLNHPSIGGFLTHSGWGSTI 237 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~---~----------~pq~~lL~~~~~~~~ItHgG~~s~~ 237 (342)
.+.+..|.+|.++ +.+++.+...+.+++..-+.. . .+..++++.+++ ++.|+-.+.-.
T Consensus 192 gktVGIvG~G~IG-------~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv--V~l~lPlt~~T 262 (385)
T PRK07574 192 GMTVGIVGAGRIG-------LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDV--VTIHCPLHPET 262 (385)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCE--EEEcCCCCHHH
Confidence 3568888999887 556677777787765332211 0 145677888887 77777765433
No 288
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=29.77 E-value=1e+02 Score=27.07 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=40.5
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCC---C-C-ccc--------CCC--------------------CCcchh----hhHH
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKN---M-A-SQA--------LDL--------------------KHSRIV----FYID 44 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~---~-~-~~~--------~~~--------------------p~~~~~----~~~~ 44 (342)
+|+..| +.+|++|.++-..- ... + . ... +.| |..... ....
T Consensus 22 nig~aL-A~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdalt~E 100 (272)
T COG2894 22 NIGTAL-AQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDALTPE 100 (272)
T ss_pred HHHHHH-HHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccCCHH
Confidence 578899 99999999998753 222 2 2 111 111 211000 5677
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECC
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDG 69 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~ 69 (342)
.+..+++++++ ..+|.||+|.
T Consensus 101 ~v~~vv~eL~~----~~fDyIi~Ds 121 (272)
T COG2894 101 GVKKVVNELKA----MDFDYIIIDS 121 (272)
T ss_pred HHHHHHHHHHh----cCCCEEEecC
Confidence 88899999874 4689999995
No 289
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=29.75 E-value=24 Score=28.10 Aligned_cols=80 Identities=10% Similarity=0.077 Sum_probs=41.3
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCCCcccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCC----cchHHH
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNMASQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGF----MPFTIE 76 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~----~~~~~~ 76 (342)
+-|+..| .++||+|++.+++. ...++-. | |+.-+-.-...+..-++++.+ ..+|+++.=.+ ...+..
T Consensus 17 lYl~~~L-k~~G~~v~Va~npAA~kLl~va--D-Pe~~Y~~~~~diD~~l~~i~e----~~~d~~~~FvHNDagvsY~~T 88 (139)
T PF09001_consen 17 LYLSYKL-KKKGFEVVVAGNPAALKLLEVA--D-PEKHYLKEVVDIDKCLAEIEE----GDFDLIFGFVHNDAGVSYAAT 88 (139)
T ss_dssp HHHHHHH-HCTTEEEEEEE-HHHHHHHHHH--S-TT-SS-SEEEEHHHHHHH--T----TS-SEEEEEESSHHHHHHHHH
T ss_pred HHHHHHH-HhcCCeEEEecCHHHHhHhhhc--C-CccchhcceeeHHHHHHHhhh----CCCCEEEEEEecchhHHHHHH
Confidence 4578899 99999999999988 6555200 0 222000011334555555543 25788874322 224445
Q ss_pred HHHHhCCceEEEe
Q 037221 77 AAQQLGLSVVMFL 89 (342)
Q Consensus 77 ~A~~lgiP~v~~~ 89 (342)
....++.+.+.+.
T Consensus 89 ~~~i~~~~~~aiV 101 (139)
T PF09001_consen 89 YKAISNAKTIAIV 101 (139)
T ss_dssp HHHHH-SEEEEEE
T ss_pred HHHHcCCCeEEEE
Confidence 5666666665543
No 290
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=29.56 E-value=27 Score=33.84 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=49.0
Q ss_pred CceEEEEecccccC-CHHHHHHHHHHHhcCCCCEEEEECCCCC--CH-HHHhC-CCCCcceeeccCCc-hhHHHhhcCCc
Q 037221 172 NSVIYVNFGIAIVV-KKQQFIEVAMGLANSNHPFLWIIRPDLF--PQ-EEVLN-HPSIGGFLTHSGWG-STIENLSAGVP 245 (342)
Q Consensus 172 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~iw~~~~~~~--pq-~~lL~-~~~~~~~ItHgG~~-s~~eal~~GvP 245 (342)
+..+++..|..... ..+.+.+.+..+...+.++++.-.++.. .+ ..+.. +.. -++..+|.. .....++++.=
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~aD 372 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPG--RVAVLIGYDEALAHLIYAGAD 372 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHhCC
Confidence 34566667777532 2334444444444445555554433211 11 11111 122 145555554 34456888899
Q ss_pred EEecccccchhhHHHHHHhHhceEE
Q 037221 246 MICWPFEGDQMTNCRYTYKERGIGM 270 (342)
Q Consensus 246 ~i~~P~~~DQ~~na~~~~~~~G~G~ 270 (342)
+++.|-..|-+.... + |.+-+|.
T Consensus 373 v~l~pS~~E~~gl~~-l-EAma~G~ 395 (476)
T cd03791 373 FFLMPSRFEPCGLTQ-M-YAMRYGT 395 (476)
T ss_pred EEECCCCCCCCcHHH-H-HHhhCCC
Confidence 999998777665543 4 6666664
No 291
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=29.46 E-value=1e+02 Score=30.85 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.6
Q ss_pred ceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 226 GFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 226 ~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
.+++|.|-| .+.||-..++|+|++.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 388888854 6789999999999984
No 292
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=29.44 E-value=1.2e+02 Score=28.39 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=15.1
Q ss_pred hHHHHHHHhCCceEEEecc
Q 037221 73 FTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 73 ~~~~~A~~lgiP~v~~~~~ 91 (342)
....+|+.+|||+++..+.
T Consensus 263 ~lA~~Ak~~~vPfyV~Ap~ 281 (356)
T PRK08334 263 TLAVLAKEHGIPFFTVAPL 281 (356)
T ss_pred HHHHHHHHhCCCEEEEccc
Confidence 3468899999999998643
No 293
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=29.30 E-value=76 Score=27.31 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcc-------hHHHHHHHhCCceEEEecchhh
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMP-------FTIEAAQQLGLSVVMFLTISAC 94 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~-------~~~~~A~~lgiP~v~~~~~~~~ 94 (342)
+=.+.+.+++++++ .+||++++|.+.. .|..++-.+++|+|.+.-....
T Consensus 74 RE~P~~l~~l~~l~-----~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~~l~ 129 (206)
T PF04493_consen 74 RELPCILEALEKLK-----NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKSLLY 129 (206)
T ss_dssp GTHHHHHHHHHTSS-----S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS-TT
T ss_pred hhHHHHHHHHHHhc-----ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCcccc
Confidence 44456667777775 4799999987543 3455677889999998754433
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=29.22 E-value=58 Score=30.79 Aligned_cols=84 Identities=12% Similarity=0.190 Sum_probs=48.1
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCC-C-cccCCCCCcchh-hhHHHHHHHHHHHhhCCCCCCccEEEECCCcch----
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNM-A-SQALDLKHSRIV-FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPF---- 73 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~-~-~~~~~~p~~~~~-~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~---- 73 (342)
+++|..+ +.+|.+|.+++..+ ..++ . ...+....+.+. .....+..+++.+.+ .+||+||.|.+...
T Consensus 100 lq~a~~~-a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~----~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 100 LQVAARL-AKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE----LKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred HHHHHHH-HhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh----cCCcEEEEcchHHhhccc
Confidence 5677778 88889999998877 6555 3 111111111110 011123344444432 58999999985321
Q ss_pred -----------------HHHHHHHhCCceEEEec
Q 037221 74 -----------------TIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 74 -----------------~~~~A~~lgiP~v~~~~ 90 (342)
-..+|+..|++.+.+..
T Consensus 175 ~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 175 LTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 12457888999888753
No 295
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=29.14 E-value=2.8e+02 Score=25.93 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=40.9
Q ss_pred CHHHHhCCCCCcceee------ccCCchhHHHhhcCCcEEe-cccccchhhHHHHHHhHhceEEEec
Q 037221 214 PQEEVLNHPSIGGFLT------HSGWGSTIENLSAGVPMIC-WPFEGDQMTNCRYTYKERGIGMEIN 273 (342)
Q Consensus 214 pq~~lL~~~~~~~~It------HgG~~s~~eal~~GvP~i~-~P~~~DQ~~na~~~~~~~G~G~~l~ 273 (342)
...+++...++.++.+ +-+.--+.+++.+|+.+++ =|+..++-.-...++++.|+=..+.
T Consensus 55 ~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~ 121 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVN 121 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 6788888888866664 2334567788999999988 7887655555555545556555543
No 296
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.05 E-value=46 Score=29.50 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCCcceeeccCCchhHHHhh----cCCcEEeccc
Q 037221 222 PSIGGFLTHSGWGSTIENLS----AGVPMICWPF 251 (342)
Q Consensus 222 ~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~ 251 (342)
+++ +|+-||-||++.++. .++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 455 999999999998866 3678877643
No 297
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.97 E-value=2.9e+02 Score=22.88 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=61.5
Q ss_pred CHHHH-hCCCCCcceeeccC---CchhHHHhhcCCcEEecccc-cchhhHHHHHHhHhceEEEec-ccccCCHhHHHHHH
Q 037221 214 PQEEV-LNHPSIGGFLTHSG---WGSTIENLSAGVPMICWPFE-GDQMTNCRYTYKERGIGMEIN-GDEDGIRNVIQKSV 287 (342)
Q Consensus 214 pq~~l-L~~~~~~~~ItHgG---~~s~~eal~~GvP~i~~P~~-~DQ~~na~~~~~~~G~G~~l~-~~~~~~~~~l~~~i 287 (342)
.|..+ -+||++.+-+--.| ..|..|--.+|.=.+.==-+ -=+..|+++. +++|.=-.+- +.. +.++|..+.
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVkg~--~k~~Il~a~ 140 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVKGN--TKDTILAAF 140 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeecCC--CHHHHHHHH
Confidence 34444 45888743333333 45677777777655321111 1256799999 8999875554 245 888898888
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHH
Q 037221 288 RELLEGEKGKQMRNKASEWKKLVV 311 (342)
Q Consensus 288 ~~ll~~~~~~~~r~~a~~l~~~~~ 311 (342)
.+=+.|+..++++..+.++.+...
T Consensus 141 ~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 141 ERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHH
Confidence 888888876778887777765544
No 298
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=28.84 E-value=64 Score=29.91 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=25.7
Q ss_pred CccEEE-ECCC-cchHHHHHHHhCCceEEEecchhh
Q 037221 61 AVSCII-SDGF-MPFTIEAAQQLGLSVVMFLTISAC 94 (342)
Q Consensus 61 ~pD~vI-~D~~-~~~~~~~A~~lgiP~v~~~~~~~~ 94 (342)
.||+|| .|+. ...+..=|.++|||+|.+.-+.+-
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 699986 6653 347888899999999998755543
No 299
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=28.71 E-value=97 Score=26.48 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=23.4
Q ss_pred CccEEEECCCc--chHHHHHHHhCCceEEEecch
Q 037221 61 AVSCIISDGFM--PFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 61 ~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 92 (342)
+||+||..... .....-....+||++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999977655 456666778899999987765
No 300
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=28.65 E-value=90 Score=26.62 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=25.0
Q ss_pred CccEEE-ECCCcc-hHHHHHHHhCCceEEEecchh
Q 037221 61 AVSCII-SDGFMP-FTIEAAQQLGLSVVMFLTISA 93 (342)
Q Consensus 61 ~pD~vI-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 93 (342)
.||+|| .|+..- -+..=|.++|||++.+.-+..
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 589886 676433 778889999999999865443
No 301
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=28.34 E-value=3.7e+02 Score=22.92 Aligned_cols=70 Identities=10% Similarity=-0.018 Sum_probs=43.4
Q ss_pred hhHHHHHHhcC--CCCceEEEEecccccCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHhCCCCCcceeeccC
Q 037221 159 ETECLRWLDSK--LPNSVIYVNFGIAIVVKKQQFIEVAMGLANS-NHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSG 232 (342)
Q Consensus 159 ~~~~~~~l~~~--~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG 232 (342)
.+.+.+++... ....++||...|. ...+....+.+++++. +..+.-....+.....+.+..+++ ++--||
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~--I~l~GG 89 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADV--IYVGGG 89 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCE--EEECCc
Confidence 33455565554 3456888877666 3456777788999999 877654432111123566777776 666665
No 302
>PLN03139 formate dehydrogenase; Provisional
Probab=28.32 E-value=3.3e+02 Score=25.97 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=35.3
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC--------------CHHHHhCCCCCcceeeccCCc
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF--------------PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~--------------pq~~lL~~~~~~~~ItHgG~~ 234 (342)
.+.+-.|.+|.++ ..+++.+...+.+++. +..... ...++++.+++ ++.|+-.+
T Consensus 199 gktVGIVG~G~IG-------~~vA~~L~afG~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~~sDv--V~l~lPlt 266 (386)
T PLN03139 199 GKTVGTVGAGRIG-------RLLLQRLKPFNCNLLY-HDRLKMDPELEKETGAKFEEDLDAMLPKCDV--VVINTPLT 266 (386)
T ss_pred CCEEEEEeecHHH-------HHHHHHHHHCCCEEEE-ECCCCcchhhHhhcCceecCCHHHHHhhCCE--EEEeCCCC
Confidence 4678899999987 5566777778887754 332110 45667777776 77666544
No 303
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=28.28 E-value=66 Score=31.20 Aligned_cols=27 Identities=22% Similarity=0.044 Sum_probs=22.3
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||++|... .+..+|+++|||++.+.
T Consensus 386 ~~pdllig~s---~~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 386 LKPDIIFSGI---KEKFVAQKLGVPYRQMH 412 (443)
T ss_pred cCCCEEEEcC---cchhhhhhcCCCeEecC
Confidence 3799999886 55778999999998753
No 304
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=28.27 E-value=4e+02 Score=23.16 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC--CHHHHhCCCCCcceeeccCCchh--
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF--PQEEVLNHPSIGGFLTHSGWGST-- 236 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~--pq~~lL~~~~~~~~ItHgG~~s~-- 236 (342)
.+.+++... .+.+.||-+-|.........+...++|+..|..+.-.-..... .-...|...+ +|-=||.||.
T Consensus 23 ~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d---~IyVgGGNTF~L 98 (224)
T COG3340 23 FIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKAD---IIYVGGGNTFNL 98 (224)
T ss_pred HHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhcc---EEEECCchHHHH
Confidence 344445432 4578999888776555667788899999999876533211110 1222333467 6777787764
Q ss_pred -------------HHHhhcCCcEEecc
Q 037221 237 -------------IENLSAGVPMICWP 250 (342)
Q Consensus 237 -------------~eal~~GvP~i~~P 250 (342)
.|.+.+|+|-+.+-
T Consensus 99 L~~lke~gld~iIr~~vk~G~~YiG~S 125 (224)
T COG3340 99 LQELKETGLDDIIRERVKAGTPYIGWS 125 (224)
T ss_pred HHHHHHhCcHHHHHHHHHcCCceEEec
Confidence 47788999987764
No 305
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.94 E-value=92 Score=28.05 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=36.4
Q ss_pred CCCCcceeeccCCchhHHHhh-cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 221 HPSIGGFLTHSGWGSTIENLS-AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~-~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.+++ +|+=||-||++.++. +.+|++.+-.. ++|. . ..+ +++++.++++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G------------~lGF--L--~~~--~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG------------GLGF--L--TEI--EIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC------------CCcc--C--ccc--CHHHHHHHHHHHHcCC
Confidence 4555 999999999999987 45566655220 1111 0 135 7888889999988764
No 306
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.81 E-value=3.3e+02 Score=27.33 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=47.1
Q ss_pred hhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-------CHHHHhCCCCCcceeecc
Q 037221 159 ETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-------PQEEVLNHPSIGGFLTHS 231 (342)
Q Consensus 159 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-------pq~~lL~~~~~~~~ItHg 231 (342)
.+-+.+.|.+.+- ..||..-|+.. ..+++++...+.+++.. .++. -+...-..+.+ +++|.
T Consensus 19 ~~~i~~~L~~~Gv-~~vFg~pG~~~-------~~l~~al~~~~i~~i~~--~hE~~A~~~A~gyar~tg~~gv--~~~t~ 86 (571)
T PRK07710 19 AQMLIEALEKEGV-EVIFGYPGGAV-------LPLYDALYDCGIPHILT--RHEQGAIHAAEGYARISGKPGV--VIATS 86 (571)
T ss_pred HHHHHHHHHHcCC-CEEEeCCCcch-------HHHHHHHHhcCCcEEEe--CCHHHHHHHHHHHHHHhCCCeE--EEECC
Confidence 3445666766532 24666555543 44566665555555533 2211 22223333444 99999
Q ss_pred CCc------hhHHHhhcCCcEEecc
Q 037221 232 GWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 232 G~~------s~~eal~~GvP~i~~P 250 (342)
|-| .+.+|...++|+|++-
T Consensus 87 GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 87 GPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CccHHHHHHHHHHHhhcCCCEEEEe
Confidence 976 4679999999999884
No 307
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.73 E-value=3.4e+02 Score=22.20 Aligned_cols=132 Identities=10% Similarity=0.125 Sum_probs=71.0
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC------CHHHHhCCCCCcceeeccCCchh---HHHhhcCC
Q 037221 174 VIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF------PQEEVLNHPSIGGFLTHSGWGST---IENLSAGV 244 (342)
Q Consensus 174 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------pq~~lL~~~~~~~~ItHgG~~s~---~eal~~Gv 244 (342)
.|-|-+||.. +-+..+..++.|+.++.++-..+-+.+. .+..=.....++.||.-.|.--= +-+..--+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~l 81 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPL 81 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCC
Confidence 4666677765 3455666677777777666433323332 12222233445557776653211 12233478
Q ss_pred cEEeccccc---chhhHHHHHHhHhceEEEecc-----cccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHc
Q 037221 245 PMICWPFEG---DQMTNCRYTYKERGIGMEING-----DEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAA 314 (342)
Q Consensus 245 P~i~~P~~~---DQ~~na~~~~~~~G~G~~l~~-----~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~ 314 (342)
|+|.+|.-. +-.+--.-+ .++-.|+.+-+ .. +..-+...|-. +.|++ ++++.+++++.+++.+
T Consensus 82 PViGVPv~s~~L~GlDSL~Si-VQMP~GvPVaTvaIg~a~--NAallAa~ILa-~~d~~---l~~kl~~~r~~~~~~V 152 (162)
T COG0041 82 PVIGVPVQSKALSGLDSLLSI-VQMPAGVPVATVAIGNAA--NAALLAAQILA-IKDPE---LAEKLAEFREAQTEEV 152 (162)
T ss_pred CeEeccCccccccchHHHHHH-hcCCCCCeeEEEeecchh--hHHHHHHHHHc-CCCHH---HHHHHHHHHHHHHHHH
Confidence 999999863 222223334 34555555543 12 33333333321 34666 9999999998888743
No 308
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=27.69 E-value=51 Score=29.87 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=33.0
Q ss_pred ccCCchhH--HHhhcCCcEEecccccchhhHHHHHHhHhceE
Q 037221 230 HSGWGSTI--ENLSAGVPMICWPFEGDQMTNCRYTYKERGIG 269 (342)
Q Consensus 230 HgG~~s~~--eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G 269 (342)
=||||+++ -|-.+|+-++.+-+...|..+++.-+.+.|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 47888766 45557999999999999999998743788988
No 309
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=27.41 E-value=72 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCccEEE-ECCC-cchHHHHHHHhCCceEEEecch
Q 037221 60 PAVSCII-SDGF-MPFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 60 ~~pD~vI-~D~~-~~~~~~~A~~lgiP~v~~~~~~ 92 (342)
..||+|| .|+. ...+..=|.++|||++.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 5799987 5543 3377788999999999987554
No 310
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=27.37 E-value=1.6e+02 Score=26.93 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=46.1
Q ss_pred ChhhcchhhccCCCeEEEE-eCCC-CCCC-C-cccCCCCCcchhhhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHH
Q 037221 1 MLQLAKLPHHHKGFHITFV-NFEN-KKNM-A-SQALDLKHSRIVFYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIE 76 (342)
Q Consensus 1 ~l~la~~L~~~~Gh~Vt~~-~~~~-~~~~-~-~~~~~~p~~~~~~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~ 76 (342)
|.+|++.| .++|.+|.+. +++. .+.. . .... +.-++ .....+.++..-+. +-|++|+. ..+...
T Consensus 199 ~a~li~~l-~~~~~~ivl~~G~~~e~~~~~~i~~~~--~~~~l-~g~~sL~elaali~------~a~l~I~n--DSGp~H 266 (322)
T PRK10964 199 WRELIGLL-APSGLRIKLPWGAEHEEQRAKRLAEGF--PYVEV-LPKLSLEQVARVLA------GAKAVVSV--DTGLSH 266 (322)
T ss_pred HHHHHHHH-HHCCCeEEEeCCCHHHHHHHHHHHccC--Cccee-cCCCCHHHHHHHHH------hCCEEEec--CCcHHH
Confidence 35788999 8899998875 5543 3322 2 0000 00001 00112334444442 34999976 346788
Q ss_pred HHHHhCCceEEEec
Q 037221 77 AAQQLGLSVVMFLT 90 (342)
Q Consensus 77 ~A~~lgiP~v~~~~ 90 (342)
+|..+|+|++.++.
T Consensus 267 lA~A~g~p~valfG 280 (322)
T PRK10964 267 LTAALDRPNITLYG 280 (322)
T ss_pred HHHHhCCCEEEEEC
Confidence 99999999999875
No 311
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=27.34 E-value=2.7e+02 Score=26.13 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=45.1
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEE-ECCCCC-----CHHHHhCCCCCcceeeccCCch
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWI-IRPDLF-----PQEEVLNHPSIGGFLTHSGWGS 235 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~-~~~~~~-----pq~~lL~~~~~~~~ItHgG~~s 235 (342)
+.+++...+ ++++.|+ |.... ......+.+.|+..+..+++. +.++.. .-.+.+...+..++|.=||...
T Consensus 21 l~~~l~~~g-~~~livt-d~~~~--~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv 96 (366)
T PRK09423 21 LGEYLKPLG-KRALVIA-DEFVL--GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT 96 (366)
T ss_pred HHHHHHHcC-CEEEEEE-ChhHH--HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 444555444 4455555 33321 235566777887776655432 222221 1112232223344888777543
Q ss_pred hHHH----hhcCCcEEecccc
Q 037221 236 TIEN----LSAGVPMICWPFE 252 (342)
Q Consensus 236 ~~ea----l~~GvP~i~~P~~ 252 (342)
+--+ +..|+|++.+|..
T Consensus 97 ~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 97 LDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHcCCCEEEeCCc
Confidence 3322 3459999999975
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=27.31 E-value=1.3e+02 Score=27.63 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=58.4
Q ss_pred hhcchhhccCCCeEEEEeCCC-CCCC-Cc--------ccC---CC------CCc-chhhhHHHHHHHHHHHhhCCCCCCc
Q 037221 3 QLAKLPHHHKGFHITFVNFEN-KKNM-AS--------QAL---DL------KHS-RIVFYIDHNRAFILFVNQNGNQPAV 62 (342)
Q Consensus 3 ~la~~L~~~~Gh~Vt~~~~~~-~~~~-~~--------~~~---~~------p~~-~~~~~~~~~~~li~~~~~~~~~~~p 62 (342)
.|.+.| .++||+|.++...+ .+.- .. ... ++ |.. .+-......++.++-+.. ..+
T Consensus 70 ~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldA----aG~ 144 (323)
T COG1703 70 ALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDA----AGY 144 (323)
T ss_pred HHHHHH-HHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHh----cCC
Confidence 578889 99999999998777 5554 21 000 11 111 111344455555555543 478
Q ss_pred cEEEECCCcc--hHHHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCch
Q 037221 63 SCIISDGFMP--FTIEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFD 124 (342)
Q Consensus 63 D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (342)
|+||.+.-.. +=..+++...+=.+...+...-.. .....++ +--+|.+.+|-++
T Consensus 145 DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~-------Q~iK~Gi-mEiaDi~vINKaD 200 (323)
T COG1703 145 DVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDL-------QGIKAGI-MEIADIIVINKAD 200 (323)
T ss_pred CEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHH-------HHHHhhh-hhhhheeeEeccC
Confidence 9999886443 334555555554444333222111 1111122 5567777887764
No 313
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=27.00 E-value=55 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=22.3
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||++|... ....+|+++|||++.+.
T Consensus 394 ~~pDllig~~---~~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 394 YKPDIILTGI---REGELAKKLGVPYINIH 420 (457)
T ss_pred cCCCEEEecC---CcchhhhhcCCCEEEcc
Confidence 3899999886 45678999999998864
No 314
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=26.97 E-value=1.5e+02 Score=25.45 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.++.+++.+++..-.-..-+||+|--...+...|+.+|||+..+.
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~ 56 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYP 56 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEec
Confidence 466777777552212245677888656677889999999998753
No 315
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=26.78 E-value=74 Score=27.33 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=25.5
Q ss_pred CccEEE-ECCCcc-hHHHHHHHhCCceEEEecchhh
Q 037221 61 AVSCII-SDGFMP-FTIEAAQQLGLSVVMFLTISAC 94 (342)
Q Consensus 61 ~pD~vI-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 94 (342)
.||+|| .|+..- -|..=|.++|||++.+.-+..-
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~d 149 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNL 149 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCC
Confidence 689886 676333 7778899999999998754433
No 316
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.56 E-value=89 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=6.9
Q ss_pred hcchhhccCCCeEEEE
Q 037221 4 LAKLPHHHKGFHITFV 19 (342)
Q Consensus 4 la~~L~~~~Gh~Vt~~ 19 (342)
++..| .++||+|.++
T Consensus 20 la~~l-~~~G~~v~~~ 34 (121)
T PF02310_consen 20 LAAYL-RKAGHEVDIL 34 (121)
T ss_dssp HHHHH-HHTTBEEEEE
T ss_pred HHHHH-HHCCCeEEEE
Confidence 33444 4445555444
No 317
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=26.39 E-value=72 Score=26.23 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=43.3
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcC-CCCEEEEECCCCC-----CHHHHhCCCCCcceeeccCC-
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANS-NHPFLWIIRPDLF-----PQEEVLNHPSIGGFLTHSGW- 233 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~~-----pq~~lL~~~~~~~~ItHgG~- 233 (342)
-+.+.|...+-+ .||--.|+.. ..++++|+.. +.+++........ =+..+-..+.+ +++|.|-
T Consensus 6 ~l~~~L~~~Gv~-~vfgvpG~~~-------~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v--~~~~~GpG 75 (172)
T PF02776_consen 6 ALAEALKANGVT-HVFGVPGSGN-------LPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGV--VIVTSGPG 75 (172)
T ss_dssp HHHHHHHHTT-S-EEEEE--GGG-------HHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEE--EEEETTHH
T ss_pred HHHHHHHHCCCe-EEEEEeChhH-------hHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceE--EEeecccc
Confidence 345556554433 3444444442 4577888777 4666654321110 12223344455 8888874
Q ss_pred -----chhHHHhhcCCcEEeccc
Q 037221 234 -----GSTIENLSAGVPMICWPF 251 (342)
Q Consensus 234 -----~s~~eal~~GvP~i~~P~ 251 (342)
+++.+|...++|+|++.-
T Consensus 76 ~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 76 ATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp HHTTHHHHHHHHHTT-EEEEEEE
T ss_pred hHHHHHHHhhcccceeeEEEEec
Confidence 366788889999998764
No 318
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.30 E-value=2.3e+02 Score=19.68 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=15.2
Q ss_pred eeeccCCchhHHHh------hcCCcEEeccc
Q 037221 227 FLTHSGWGSTIENL------SAGVPMICWPF 251 (342)
Q Consensus 227 ~ItHgG~~s~~eal------~~GvP~i~~P~ 251 (342)
+|-|||.-+=.+.+ ..|||++..|-
T Consensus 35 ~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 35 VLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 67788773333333 36788777663
No 319
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.28 E-value=1.3e+02 Score=28.03 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=24.0
Q ss_pred hCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhc
Q 037221 219 LNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERG 267 (342)
Q Consensus 219 L~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G 267 (342)
|...+. .++|||+.... ...-|-.++|+ .-.+.+ ++.|
T Consensus 266 l~~~~~--~~~HgGYD~~~---an~D~N~v~Pl-----D~LreL-~~EG 303 (349)
T PF07355_consen 266 LSSDDY--MTIHGGYDPAY---ANEDPNRVFPL-----DRLREL-EKEG 303 (349)
T ss_pred CCccce--EeeccccChhH---hccCCCeeeeH-----HHHHHH-HHcC
Confidence 333444 89999987654 34667777776 455666 4444
No 320
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.10 E-value=1.5e+02 Score=25.98 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=39.3
Q ss_pred hhhcchhhccCCCeEEEEeCCC-CCCCC--ccc-CCC--CCc-chh--hhHHHHHHHHHHHhhCCCCCCccEEEECCCc
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN-KKNMA--SQA-LDL--KHS-RIV--FYIDHNRAFILFVNQNGNQPAVSCIISDGFM 71 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~-~~~~~--~~~-~~~--p~~-~~~--~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~ 71 (342)
+.||.+| +++|-+|+++-..+ ++..+ ... -++ |.. ++. .-...+++.++.... ..+|+|+.|...
T Consensus 20 ~~LAs~l-a~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~----~~~d~VlvDleG 93 (231)
T PF07015_consen 20 MALASEL-AARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEA----SGFDFVLVDLEG 93 (231)
T ss_pred HHHHHHH-HHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHh----cCCCEEEEeCCC
Confidence 5689999 99999999999887 65543 111 111 211 221 122344555555442 357999999744
No 321
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=25.94 E-value=5.3e+02 Score=26.06 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=52.0
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhcC-C--CCEEE--EECCCCC-CHHHHhCCCCCccee------eccCCchhHHH
Q 037221 172 NSVIYVNFGIAIVVKKQQFIEVAMGLANS-N--HPFLW--IIRPDLF-PQEEVLNHPSIGGFL------THSGWGSTIEN 239 (342)
Q Consensus 172 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~--~~~iw--~~~~~~~-pq~~lL~~~~~~~~I------tHgG~~s~~ea 239 (342)
+.+.+++.|++.. ...+.++.|++. + .++|= .+++-+. ....+.+..+. +| .+||+|+....
T Consensus 461 ~dvtiia~G~~v~----~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~~~~~~--vvtvEe~~~~GG~gs~v~~ 534 (581)
T PRK12315 461 EKVAILALGDFYE----LGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLKEDHEL--VVTLEDGILDGGFGEKIAR 534 (581)
T ss_pred CCEEEEEEchHHH----HHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHHhhCCE--EEEEcCCCcCCCHHHHHHH
Confidence 4688899998863 222334444433 3 33331 1111110 12233333332 55 46889887666
Q ss_pred hhcC--CcE--Eeccc-ccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 240 LSAG--VPM--ICWPF-EGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 240 l~~G--vP~--i~~P~-~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
.... +|+ +.+|- +.++....... ++.| + +++.|.++|++++
T Consensus 535 ~l~~~~~~~~~~gi~d~f~~~g~~~~l~-~~~G--------l--~~~~I~~~i~~~l 580 (581)
T PRK12315 535 YYGNSDMKVLNYGAKKEFNDRVPVEELY-KRNH--------L--TPEQIVEDILSVL 580 (581)
T ss_pred HHHcCCCeEEEecCCCCCCCCCCHHHHH-HHHC--------c--CHHHHHHHHHHHh
Confidence 5543 333 44554 44433333333 4443 5 8888888887765
No 322
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=25.90 E-value=4.7e+02 Score=24.14 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=48.7
Q ss_pred cCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCchhHHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecc---c
Q 037221 199 NSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGSTIENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING---D 275 (342)
Q Consensus 199 ~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~---~ 275 (342)
..+.++...++.+..+++++|+.=.-+-+|||| ++|+|--.+=--++=+.+.++. .+.|+=.-+-. .
T Consensus 183 ~~klPlmvHigePp~~~dEvlerL~~GDIitHc---------fngkpn~~l~~dg~vr~~vrra-~erGV~fD~ghG~as 252 (386)
T COG3964 183 DLKLPLMVHIGEPPVLMDEVLERLRRGDIITHC---------FNGKPNTILTDDGVVRAEVRRA-RERGVIFDAGHGRAS 252 (386)
T ss_pred hcCCceEEecCCCCccHHHHHHhccCCceeeee---------ccCCCCCccccchhHHHHHHHH-HhcceEEEccCCcce
Confidence 456676666655444678877766666699998 5678865544445666677776 44444333321 5
Q ss_pred ccCCHhHHHHHHHH
Q 037221 276 EDGIRNVIQKSVRE 289 (342)
Q Consensus 276 ~~~~~~~l~~~i~~ 289 (342)
+ +-..-+++|.+
T Consensus 253 f--sf~vAr~aia~ 264 (386)
T COG3964 253 F--SFNVARRAIAN 264 (386)
T ss_pred e--eHHHHHHHHhc
Confidence 5 66666666654
No 323
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=25.75 E-value=4.3e+02 Score=22.72 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCccee---eccCCchhH
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFL---THSGWGSTI 237 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~I---tHgG~~s~~ 237 (342)
.+...++.-+.-.=|.--+||......+.++.+++.|++.+.- || |++..-.-.
T Consensus 79 ~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~gl~-----------------------FvDS~T~~~s~a~~ 135 (213)
T PF04748_consen 79 RLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLKERGLF-----------------------FVDSRTTPRSVAPQ 135 (213)
T ss_dssp HHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHHHTT-E-----------------------EEE-S--TT-SHHH
T ss_pred HHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHHHcCCE-----------------------EEeCCCCcccHHHH
Confidence 3444455544332244458888877888889999999887633 44 444445556
Q ss_pred HHhhcCCcEEecccccc----------hhhHHHHHHhHhceEEEec
Q 037221 238 ENLSAGVPMICWPFEGD----------QMTNCRYTYKERGIGMEIN 273 (342)
Q Consensus 238 eal~~GvP~i~~P~~~D----------Q~~na~~~~~~~G~G~~l~ 273 (342)
.|-..|+|....=.|-| |...+.+++.+.|.++.+-
T Consensus 136 ~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Ig 181 (213)
T PF04748_consen 136 VAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIG 181 (213)
T ss_dssp HHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEE
Confidence 77889999988777655 6667777766678888876
No 324
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=25.67 E-value=3.2e+02 Score=25.26 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=55.5
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC-----------CCHHHHhCCCCCcceeeccCCchhHHH
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL-----------FPQEEVLNHPSIGGFLTHSGWGSTIEN 239 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~-----------~pq~~lL~~~~~~~~ItHgG~~s~~ea 239 (342)
.+.+-.+.+|.++ +.+++-++..+.++++.-.... .+..++|+.+++ ++-||..+-=
T Consensus 146 gktvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDi--i~l~~Plt~~--- 213 (324)
T COG1052 146 GKTLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDI--ISLHCPLTPE--- 213 (324)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCE--EEEeCCCChH---
Confidence 3456677777776 5566667777888776543321 078889999997 7777654321
Q ss_pred hhcCCcEEecccccchhhHHHHHHhHhceEEEecc-----cccCCHhHHHHHHH
Q 037221 240 LSAGVPMICWPFEGDQMTNCRYTYKERGIGMEING-----DEDGIRNVIQKSVR 288 (342)
Q Consensus 240 l~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~-----~~~~~~~~l~~~i~ 288 (342)
..+..|+..+ +.++=|..+-. .+ +.+.+.++++
T Consensus 214 -------------T~hLin~~~l-~~mk~ga~lVNtaRG~~V--De~ALi~AL~ 251 (324)
T COG1052 214 -------------TRHLINAEEL-AKMKPGAILVNTARGGLV--DEQALIDALK 251 (324)
T ss_pred -------------HhhhcCHHHH-HhCCCCeEEEECCCcccc--CHHHHHHHHH
Confidence 1344577777 66666644421 45 6666666664
No 325
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=25.66 E-value=1.5e+02 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCC
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSN 201 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 201 (342)
+.+..+|+++||-.....+.++..+..|...+
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 44567999999987555666777777776643
No 326
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=25.65 E-value=1.3e+02 Score=26.62 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=17.6
Q ss_pred hhhcchhhccCCCeEEEEeCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
+.||..| ++.|++|.++-...
T Consensus 122 ~nLA~~l-a~~g~~VllID~D~ 142 (274)
T TIGR03029 122 ANLAIVF-SQLGEKTLLIDANL 142 (274)
T ss_pred HHHHHHH-HhcCCeEEEEeCCC
Confidence 4688999 99999999997644
No 327
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=25.45 E-value=3.9e+02 Score=23.41 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCCCCCcceeeccCCch------
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNHPSIGGFLTHSGWGS------ 235 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~~~~~~~ItHgG~~s------ 235 (342)
+.+++. ..+.++||-.-|.............+++++.+..+...-..++ + .+.|..+++ ++--||..+
T Consensus 24 ~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d-~-~~~l~~ad~--I~v~GGnt~~l~~~l 97 (233)
T PRK05282 24 IAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD-P-VAAIENAEA--IFVGGGNTFQLLKQL 97 (233)
T ss_pred HHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh-h-HHHHhcCCE--EEECCccHHHHHHHH
Confidence 444554 3456888877665433455567788899999988665433221 2 355667774 555555322
Q ss_pred --------hHHHhhcCCcEEec
Q 037221 236 --------TIENLSAGVPMICW 249 (342)
Q Consensus 236 --------~~eal~~GvP~i~~ 249 (342)
+.+++..|+|++..
T Consensus 98 ~~~gl~~~l~~~~~~G~~~~G~ 119 (233)
T PRK05282 98 YERGLLAPIREAVKNGTPYIGW 119 (233)
T ss_pred HHCCcHHHHHHHHHCCCEEEEE
Confidence 23556678876543
No 328
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=3.2e+02 Score=25.32 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC-C--CHHHHhCC-CCCcceeeccCCchh
Q 037221 161 ECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL-F--PQEEVLNH-PSIGGFLTHSGWGST 236 (342)
Q Consensus 161 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~-~--pq~~lL~~-~~~~~~ItHgG~~s~ 236 (342)
+..+.-.+.+++.+||++.|-....+.. ...+..+.. .+..-+..+.... . ....+|.. ..+.+||+-|=-.++
T Consensus 122 dal~iA~enpdk~VVffaiGFETT~P~T-A~~l~~~~~-e~i~Nf~~ls~H~~~pPa~e~Ll~~~~~idafi~PGHVStI 199 (364)
T COG0409 122 DALKIAKENPDKKVVFFAIGFETTTPTT-ACMLLSAKG-EGIENFFVLSNHRLLPPAVEALLESEVLIDAFLAPGHVSTI 199 (364)
T ss_pred HHHHHHhhCCCCceEEEeCccccCCCch-HHHHHhccc-cccceEEEEEeceecCHHHHHHHhccccccceeccceeEEE
Confidence 3455566678899999999987643322 112222222 1211122221111 1 35556665 455677776533332
Q ss_pred HHHhhcCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCC
Q 037221 237 IENLSAGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAP 316 (342)
Q Consensus 237 ~eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~ 316 (342)
. +-+++.- .. ++.++-+.+.+ + .+.+|..+|.-++.. ..++..++-.+++.++..
T Consensus 200 i---------------G~kpY~~-la-~ky~~P~VVaG-F--EP~DiL~~i~~ll~q-----~~~g~akv~NeY~RaV~~ 254 (364)
T COG0409 200 I---------------GTKPYEF-LA-EKYKFPIVVAG-F--EPLDILLGVLMLLKQ-----IIRGEAKVENEYKRAVKD 254 (364)
T ss_pred e---------------cccccHH-HH-HhcCCCeEEec-C--CHHHHHHHHHHHHHH-----HhcCceEEEecceeecCC
Confidence 1 2223321 12 55566655553 5 677777777666531 333334444455555555
Q ss_pred CCchHHHHHHHHHHHhC
Q 037221 317 DGPSSKNLVKLVNESLL 333 (342)
Q Consensus 317 ~g~~~~~~~~~i~~l~~ 333 (342)
.|. ..+.++++++.+
T Consensus 255 eGN--~~Aq~~i~~vFe 269 (364)
T COG0409 255 EGN--VKAQELINEVFE 269 (364)
T ss_pred CcC--HHHHHHHHHHhc
Confidence 565 456666666654
No 329
>COG3150 Predicted esterase [General function prediction only]
Probab=25.31 E-value=1e+02 Score=25.76 Aligned_cols=48 Identities=8% Similarity=-0.094 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecch
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTIS 92 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 92 (342)
...+.+.+++.+... +.|-+|=+..-.+|+-.++..+||+.+++.+..
T Consensus 44 ~a~~ele~~i~~~~~----~~p~ivGssLGGY~At~l~~~~Girav~~NPav 91 (191)
T COG3150 44 QALKELEKAVQELGD----ESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAV 91 (191)
T ss_pred HHHHHHHHHHHHcCC----CCceEEeecchHHHHHHHHHHhCChhhhcCCCc
Confidence 556666777777642 334333355567799999999999999987654
No 330
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=25.20 E-value=4e+02 Score=29.33 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=64.0
Q ss_pred chhHHHHHHhcC----CCCceEEEEecccc--cCCHHHHHHHHHHHhcCCCCEEEEECCC--CC--CHHHHhCC---CCC
Q 037221 158 KETECLRWLDSK----LPNSVIYVNFGIAI--VVKKQQFIEVAMGLANSNHPFLWIIRPD--LF--PQEEVLNH---PSI 224 (342)
Q Consensus 158 ~~~~~~~~l~~~----~~~~~V~vs~Gs~~--~~~~~~~~~~~~al~~~~~~~iw~~~~~--~~--pq~~lL~~---~~~ 224 (342)
...+..+|.... +.+|+|-|-|.... ......+..++++|++.|..++-++... .. .....|.. +.+
T Consensus 53 ~~~eYl~w~~~~~~~~~~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~v 132 (1098)
T PF02514_consen 53 SLEEYLAWYRKRGRYDPNRPTVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRV 132 (1098)
T ss_pred CHHHHHHHHhhhcccCCCCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCc
Confidence 345678888653 46788888776654 3346788999999999999888666322 11 23344544 666
Q ss_pred cceeeccCCc--------hhHHHhhcCCcEEe-ccc-ccchhhHH
Q 037221 225 GGFLTHSGWG--------STIENLSAGVPMIC-WPF-EGDQMTNC 259 (342)
Q Consensus 225 ~~~ItHgG~~--------s~~eal~~GvP~i~-~P~-~~DQ~~na 259 (342)
.++|+-.+.. .+..--..|||+|- ++. ..++..|.
T Consensus 133 DaIIn~~~f~l~~~~~~~~~~~L~~LnVPVlq~i~~~~~t~eeW~ 177 (1098)
T PF02514_consen 133 DAIINLTGFSLGGGPAGGAIELLKELNVPVLQAITLYYQTREEWE 177 (1098)
T ss_pred eEEEEcCccccCCCCcchhHHHHHHCCCCEEEeeccCCCCHHHHH
Confidence 6688776642 12222357999985 444 44444444
No 331
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.11 E-value=1.2e+02 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=19.7
Q ss_pred CccEEEECCCcch--HHH-HHHHhCCceEEEec
Q 037221 61 AVSCIISDGFMPF--TIE-AAQQLGLSVVMFLT 90 (342)
Q Consensus 61 ~pD~vI~D~~~~~--~~~-~A~~lgiP~v~~~~ 90 (342)
+||+||....... ... +.+.+|+|++.+..
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 8999997654332 122 33458999988764
No 332
>PRK06436 glycerate dehydrogenase; Provisional
Probab=24.99 E-value=2.9e+02 Score=25.23 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=36.2
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC--------CCCHHHHhCCCCCcceeeccCCch
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD--------LFPQEEVLNHPSIGGFLTHSGWGS 235 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~--------~~pq~~lL~~~~~~~~ItHgG~~s 235 (342)
.+.+-.+.+|+++ +.+++.++..+.+++..-+.. ..+..++++.+++ ++.|.-.+.
T Consensus 122 gktvgIiG~G~IG-------~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDi--v~~~lp~t~ 185 (303)
T PRK06436 122 NKSLGILGYGGIG-------RRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDF--VLISLPLTD 185 (303)
T ss_pred CCEEEEECcCHHH-------HHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCE--EEECCCCCc
Confidence 4668889999987 445555666677765332110 0156778888887 888877653
No 333
>PLN02928 oxidoreductase family protein
Probab=24.74 E-value=2.5e+02 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEE
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWI 207 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~ 207 (342)
.+.+..|.+|.++ +.+++.+...|.+++..
T Consensus 159 gktvGIiG~G~IG-------~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 159 GKTVFILGYGAIG-------IELAKRLRPFGVKLLAT 188 (347)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEE
Confidence 4568899999987 56677777788877643
No 334
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=24.66 E-value=2e+02 Score=26.58 Aligned_cols=27 Identities=41% Similarity=0.695 Sum_probs=17.7
Q ss_pred ceeeccCCchhHHH-----hhcCCcEEeccccc
Q 037221 226 GFLTHSGWGSTIEN-----LSAGVPMICWPFEG 253 (342)
Q Consensus 226 ~~ItHgG~~s~~ea-----l~~GvP~i~~P~~~ 253 (342)
++|.=|| ||++.. +..++|+|++|...
T Consensus 80 ~IIaiGG-Gs~iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 80 GIVAIGG-GSTIDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred EEEEeCC-cHHHHHHHHHHHHhcCCEEEEcCCc
Confidence 3666555 455543 33599999999853
No 335
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=24.57 E-value=3.2e+02 Score=25.57 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=9.5
Q ss_pred CCcEEeccccc
Q 037221 243 GVPMICWPFEG 253 (342)
Q Consensus 243 GvP~i~~P~~~ 253 (342)
++|+|++|...
T Consensus 122 ~~p~i~VPTt~ 132 (370)
T cd08551 122 ALPLIAIPTTA 132 (370)
T ss_pred CCCEEEecCCC
Confidence 79999999853
No 336
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=24.40 E-value=2.9e+02 Score=24.25 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=50.5
Q ss_pred ceE-EEEecccccCCHHHHHHHHHHHhcCCCCEE--EEECCCCC----C--HHHHhCCCCCcceeeccCCchhHHHhhcC
Q 037221 173 SVI-YVNFGIAIVVKKQQFIEVAMGLANSNHPFL--WIIRPDLF----P--QEEVLNHPSIGGFLTHSGWGSTIENLSAG 243 (342)
Q Consensus 173 ~~V-~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i--w~~~~~~~----p--q~~lL~~~~~~~~ItHgG~~s~~eal~~G 243 (342)
++| .+|-||.-- ...++....++.++.++. |-.+-.-. + +......+++ .|--.|+-..+-++.+|
T Consensus 118 g~vgvlsAGTSDl---PvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~--lIVvAGMEGaLPsvvag 192 (254)
T COG1691 118 GKVGVLSAGTSDL---PVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADV--LIVVAGMEGALPSVVAG 192 (254)
T ss_pred ceEEEEecCCCCc---chHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCe--EEEEcccccchHHHHHh
Confidence 445 888888742 344555556666777665 43332221 5 5556666666 99999998888887765
Q ss_pred ---CcEEecccc
Q 037221 244 ---VPMICWPFE 252 (342)
Q Consensus 244 ---vP~i~~P~~ 252 (342)
+|+|.+|..
T Consensus 193 LvD~PVIavPTs 204 (254)
T COG1691 193 LVDVPVIAVPTS 204 (254)
T ss_pred ccCCCeEecccc
Confidence 899999985
No 337
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=24.22 E-value=4.4e+02 Score=24.13 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=42.0
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECC-CCC------CHHHHhCCCCCcceeeccCCc
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRP-DLF------PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~-~~~------pq~~lL~~~~~~~~ItHgG~~ 234 (342)
+.+++...+.+++++|+ |.... +.....+.+.|+.. ..+.+.... .+. .-.+.+...+..++|.=|| |
T Consensus 14 l~~~~~~~g~~~~liv~-~~~~~--~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-G 88 (332)
T cd07766 14 IGEEIKRGGFDRALVVS-DEGVV--KGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-G 88 (332)
T ss_pred HHHHHHhcCCCeEEEEe-CCchh--hhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-c
Confidence 44445443334455555 33321 25556677777665 444443221 111 1112222222333676655 4
Q ss_pred hhHHH-----hhc--CCcEEecccc
Q 037221 235 STIEN-----LSA--GVPMICWPFE 252 (342)
Q Consensus 235 s~~ea-----l~~--GvP~i~~P~~ 252 (342)
|++.+ ..+ |+|++.+|..
T Consensus 89 s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 89 STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 44433 223 9999999975
No 338
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=24.18 E-value=41 Score=32.72 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=48.2
Q ss_pred ceEEEEeccccc-CCHHHHHHHHHHHhcCCCCEEEEECCCC-C-CHH-HH-hCCCCCcceeeccCC-chhHHHhhcCCcE
Q 037221 173 SVIYVNFGIAIV-VKKQQFIEVAMGLANSNHPFLWIIRPDL-F-PQE-EV-LNHPSIGGFLTHSGW-GSTIENLSAGVPM 246 (342)
Q Consensus 173 ~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~iw~~~~~~-~-pq~-~l-L~~~~~~~~ItHgG~-~s~~eal~~GvP~ 246 (342)
..+++..|.... ...+.+.+.+..+.+.+.++++.-.++. . .+. .+ -..+.- ++-.+|. ......++++.=+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~aDv 368 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGN--VRVIIGYDEALAHLIYAGADF 368 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCc--EEEEEcCCHHHHHHHHHhCCE
Confidence 346666677753 2234444444444444556555433321 1 111 11 112221 3334443 4445668888999
Q ss_pred EecccccchhhHHHHHHhHhceEE
Q 037221 247 ICWPFEGDQMTNCRYTYKERGIGM 270 (342)
Q Consensus 247 i~~P~~~DQ~~na~~~~~~~G~G~ 270 (342)
+++|-..|-+.... + |.+-+|.
T Consensus 369 ~l~pS~~E~~gl~~-l-EAma~G~ 390 (473)
T TIGR02095 369 ILMPSRFEPCGLTQ-L-YAMRYGT 390 (473)
T ss_pred EEeCCCcCCcHHHH-H-HHHHCCC
Confidence 99998877666544 4 5666663
No 339
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=24.13 E-value=2.4e+02 Score=23.87 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCccEEEE-CC-CcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIIS-DG-FMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~-D~-~~~~~~~~A~~lgiP~v~~~ 89 (342)
.++|.|++ +. -.+.|..+|..+|+|++.+-
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 57899983 22 23477788999999999864
No 340
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.98 E-value=4.1e+02 Score=24.14 Aligned_cols=47 Identities=11% Similarity=-0.109 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 037221 43 IDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 91 (342)
...++++++..+...-.-..-+||+|-- .+...|+.+|||+..+...
T Consensus 104 g~nl~al~~~~~~~~l~~~i~~visn~~--~~~~~A~~~gIp~~~~~~~ 150 (289)
T PRK13010 104 DHCLNDLLYRWRMGELDMDIVGIISNHP--DLQPLAVQHDIPFHHLPVT 150 (289)
T ss_pred CccHHHHHHHHHCCCCCcEEEEEEECCh--hHHHHHHHcCCCEEEeCCC
Confidence 3457888888764221234556778852 3468899999999987654
No 341
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=23.87 E-value=87 Score=25.56 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=41.6
Q ss_pred eeccCCchhHHHhhcCCcEEecccc-cchhhHHHHHHhHhceEEEecc---cccCCHhHHHHHHHHHHcC
Q 037221 228 LTHSGWGSTIENLSAGVPMICWPFE-GDQMTNCRYTYKERGIGMEING---DEDGIRNVIQKSVRELLEG 293 (342)
Q Consensus 228 ItHgG~~s~~eal~~GvP~i~~P~~-~DQ~~na~~~~~~~G~G~~l~~---~~~~~~~~l~~~i~~ll~~ 293 (342)
|+-||-.|+.++|+.- +.+++. +|-+.-...+ ++++.|+.|+. .. .-+.|.+++......
T Consensus 3 VsG~GKStvg~~lA~~---lg~~fidGDdlHp~aNi-~KM~~GiPL~DdDR~p--WL~~l~~~~~~~~~~ 66 (161)
T COG3265 3 VSGSGKSTVGSALAER---LGAKFIDGDDLHPPANI-EKMSAGIPLNDDDRWP--WLEALGDAAASLAQK 66 (161)
T ss_pred CCccCHHHHHHHHHHH---cCCceecccccCCHHHH-HHHhCCCCCCcchhhH--HHHHHHHHHHHhhcC
Confidence 4667888998888753 336654 6887777778 89999999974 22 446666666665443
No 342
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=23.73 E-value=93 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCccEEE-ECCC-cchHHHHHHHhCCceEEEecchh
Q 037221 60 PAVSCII-SDGF-MPFTIEAAQQLGLSVVMFLTISA 93 (342)
Q Consensus 60 ~~pD~vI-~D~~-~~~~~~~A~~lgiP~v~~~~~~~ 93 (342)
..||+|| .|+. ...+..=|..+|||++.+.-+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 3699986 6663 34778889999999999875444
No 343
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.70 E-value=3.2e+02 Score=24.56 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-CHHHHhCCCCCcceeeccCCch-----
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-PQEEVLNHPSIGGFLTHSGWGS----- 235 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-pq~~lL~~~~~~~~ItHgG~~s----- 235 (342)
..+++... +.++++.+|+... ....+...|.+.+.++...-+.... -+...+..-++-.+|+|.|...
T Consensus 123 av~~L~~A--~rI~~~G~g~S~~----vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~ 196 (281)
T COG1737 123 AVELLAKA--RRIYFFGLGSSGL----VASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEA 196 (281)
T ss_pred HHHHHHcC--CeEEEEEechhHH----HHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHH
Confidence 34555543 4577777777653 3344556677788877765443221 2455667777777899999762
Q ss_pred hHHHhhcCCcEEecccccch
Q 037221 236 TIENLSAGVPMICWPFEGDQ 255 (342)
Q Consensus 236 ~~eal~~GvP~i~~P~~~DQ 255 (342)
+..+-..|+|+|.+--..+-
T Consensus 197 a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 197 AELAKERGAKVIAITDSADS 216 (281)
T ss_pred HHHHHHCCCcEEEEcCCCCC
Confidence 33445589999988655443
No 344
>PRK06849 hypothetical protein; Provisional
Probab=23.68 E-value=93 Score=29.39 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.2
Q ss_pred hhhcchhhccCCCeEEEEeCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
+.+++.| .+.||+|.++....
T Consensus 18 l~iar~l-~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 18 LELARLF-HNAGHTVILADSLK 38 (389)
T ss_pred HHHHHHH-HHCCCEEEEEeCCc
Confidence 5789999 99999999997764
No 345
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.54 E-value=1.2e+02 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.6
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEE
Q 037221 61 AVSCIISDGFMPFTIEAAQQLGLSVVMF 88 (342)
Q Consensus 61 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 88 (342)
+||++|.+. ....+|+++|||++.+
T Consensus 371 ~~dliig~s---~~~~~a~~~gip~~~~ 395 (455)
T PRK14476 371 GADLLITNS---HGRQAAERLGIPLLRV 395 (455)
T ss_pred CCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 689999997 5577899999999875
No 346
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.44 E-value=1.3e+02 Score=30.25 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=36.9
Q ss_pred cceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 225 GGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 225 ~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.++|+-||-||++.+.. .++|++.+-.. .+|. +. .+ +++++.+++.++++++
T Consensus 350 dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G------------~lGF---L~-~~--~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 350 SHIISIGGDGTVLRASKLVNGEEIPIICINMG------------TVGF---LT-EF--SKEEIFKAIDSIISGE 405 (569)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC------------CCCc---Cc-cc--CHHHHHHHHHHHHcCC
Confidence 34999999999999976 47788776431 1222 11 35 7788888888888764
No 347
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=23.29 E-value=1.6e+02 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
...++++.+. +.|++|+.- +-+..+|-.+|+|++.+..
T Consensus 247 ~~~~~~~~~~------~~~~~Is~R--lH~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 247 SPDELLELIS------QADLVISMR--LHGAILALSLGVPVIAISY 284 (286)
T ss_pred CHHHHHHHHh------cCCEEEecC--CHHHHHHHHcCCCEEEEec
Confidence 3455666663 569999984 4688889999999999864
No 348
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.13 E-value=4.4e+02 Score=25.26 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=108.6
Q ss_pred hcchhhccCCCeEEEEeCCC-CCCC-C----cccC--CCCCc--c----------hhhhHHHHHHHHHHHhhCCCCCCcc
Q 037221 4 LAKLPHHHKGFHITFVNFEN-KKNM-A----SQAL--DLKHS--R----------IVFYIDHNRAFILFVNQNGNQPAVS 63 (342)
Q Consensus 4 la~~L~~~~Gh~Vt~~~~~~-~~~~-~----~~~~--~~p~~--~----------~~~~~~~~~~li~~~~~~~~~~~pD 63 (342)
|...+ .++|++|.++-..- ...- . ...+ .++.+ + +..|......++.++.+ +.+.|
T Consensus 20 l~~~i-~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~l~~---~g~i~ 95 (403)
T PF06792_consen 20 LRDQI-EAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAARFVSDLYD---EGKID 95 (403)
T ss_pred HHHHH-HHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHh---cCCcc
Confidence 44566 78999999997543 2111 1 0000 00111 1 11666777778887765 35899
Q ss_pred EEEECCCcchHHH---HHHHh--CCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCchhhhHHHHHHHhhhC
Q 037221 64 CIISDGFMPFTIE---AAQQL--GLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTFDALEVQVLDAISAMF 138 (342)
Q Consensus 64 ~vI~D~~~~~~~~---~A~~l--giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 138 (342)
-||.=.-...... +.+.| |+|-+.+++...-.... ..-..|..+.+|.-++..- -...+..+
T Consensus 96 Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~ASGd~~~------------yvg~sDI~mm~SVvDiaGl-N~isr~vL 162 (403)
T PF06792_consen 96 GVIGIGGSGGTALATAAMRALPIGFPKLMVSTMASGDTSP------------YVGESDITMMYSVVDIAGL-NSISRRVL 162 (403)
T ss_pred EEEEecCCccHHHHHHHHHhCCCCCCeEEEEccCCCCccc------------ccCcCCEEEeeeccccccC-CHHHHHHH
Confidence 9985443333333 33333 89999988755221111 1234455555543222210 00111111
Q ss_pred Cc-eeeccccc-cccccccccchhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC--CC
Q 037221 139 PN-LFTIGPLQ-LLLYQNLWKKETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL--FP 214 (342)
Q Consensus 139 p~-~~~vGpl~-~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~--~p 214 (342)
.| ...+-+.. .... + ....+||.|-+|+ ......-...+.+.|++.++.++..--... .-
T Consensus 163 ~NAA~Ai~GM~~~~~~------~-------~~~~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~a 226 (403)
T PF06792_consen 163 SNAAGAIAGMAKAYES------P-------NQQEDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTGGRA 226 (403)
T ss_pred HHHHHHHHHHhccccc------c-------cccCCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchHH
Confidence 11 11111111 0000 0 0114566777753 323345667778888888888775431111 01
Q ss_pred HHHHhCCCCCcc---------------eeeccCCchhHHHhhcCCcEEecccccc
Q 037221 215 QEEVLNHPSIGG---------------FLTHSGWGSTIENLSAGVPMICWPFEGD 254 (342)
Q Consensus 215 q~~lL~~~~~~~---------------~ItHgG~~s~~eal~~GvP~i~~P~~~D 254 (342)
+..+...-.+.+ =|..+|-.-+-.|...|+|+|+.|-.-|
T Consensus 227 ME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 227 MERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 111111111111 2566788888889999999999996544
No 349
>PLN02293 adenine phosphoribosyltransferase
Probab=23.11 E-value=2.1e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCccEEEE-CC-CcchHHHHHHHhCCceEEE
Q 037221 60 PAVSCIIS-DG-FMPFTIEAAQQLGLSVVMF 88 (342)
Q Consensus 60 ~~pD~vI~-D~-~~~~~~~~A~~lgiP~v~~ 88 (342)
.++|+|++ +. -.+.|..+|..+|+|++..
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 46899983 33 2337888999999998864
No 350
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=22.85 E-value=2.1e+02 Score=28.90 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=45.2
Q ss_pred hHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-----CHHHHhCCCCCcceeeccCCc
Q 037221 160 TECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-----PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 160 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-----pq~~lL~~~~~~~~ItHgG~~ 234 (342)
+-+.+.|...+- ..||-..|+.. ..+++++...+.++|-....... =+..+-..+ +++++|.|-|
T Consensus 10 ~~l~~~L~~~GV-~~vFGvpG~~~-------~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~--gv~~~t~GPG 79 (588)
T PRK07525 10 EAFVETLQAHGI-THAFGIIGSAF-------MDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRM--GMVIGQNGPG 79 (588)
T ss_pred HHHHHHHHHcCC-CEEEEeCCCch-------HHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCC--EEEEEcCCcc
Confidence 345556655432 24666666543 44556665545454433211100 122233334 4499998865
Q ss_pred ------hhHHHhhcCCcEEecc
Q 037221 235 ------STIENLSAGVPMICWP 250 (342)
Q Consensus 235 ------s~~eal~~GvP~i~~P 250 (342)
.+.+|...++|+|++-
T Consensus 80 ~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 80 ITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred HHHHHHHHHHHhhcCCCEEEEe
Confidence 5668899999999885
No 351
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.84 E-value=1.8e+02 Score=29.06 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=44.8
Q ss_pred hHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCC-CCEEEEECCCCC-----CHHHHhCCCCCcceeeccCC
Q 037221 160 TECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSN-HPFLWIIRPDLF-----PQEEVLNHPSIGGFLTHSGW 233 (342)
Q Consensus 160 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~iw~~~~~~~-----pq~~lL~~~~~~~~ItHgG~ 233 (342)
+-+.+.|...+= ..||-..|+.. ..++++|.+.+ .+++........ -+..+-..+. ++++|.|-
T Consensus 12 ~~l~~~L~~~GV-~~vFg~pG~~~-------~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~g--v~~~t~Gp 81 (557)
T PRK08199 12 QILVDALRANGV-ERVFCVPGESY-------LAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPG--ICFVTRGP 81 (557)
T ss_pred HHHHHHHHHcCC-CEEEeCCCcch-------hHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 345566655432 23555555543 45667775543 444443211110 2222333344 49999986
Q ss_pred c------hhHHHhhcCCcEEec
Q 037221 234 G------STIENLSAGVPMICW 249 (342)
Q Consensus 234 ~------s~~eal~~GvP~i~~ 249 (342)
| .+.+|...++|+|++
T Consensus 82 G~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 82 GATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred cHHHHHHHHHHHhhcCCCEEEE
Confidence 6 567999999999987
No 352
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.82 E-value=58 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred hhhcchhhccCCCeEEEEeCCC
Q 037221 2 LQLAKLPHHHKGFHITFVNFEN 23 (342)
Q Consensus 2 l~la~~L~~~~Gh~Vt~~~~~~ 23 (342)
+++|..| ++.|.+||++...+
T Consensus 12 ~E~A~~l-~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 12 IELAEAL-AELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHH-HHTTSEEEEEESSS
T ss_pred HHHHHHH-HHhCcEEEEEeccc
Confidence 5688899 99999999999876
No 353
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=22.71 E-value=5.2e+02 Score=23.34 Aligned_cols=47 Identities=6% Similarity=-0.021 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 42 YIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
....++++++..+...-.-..-+||+|--. +...|+.+|||+..+..
T Consensus 94 ~g~nl~~l~~~~~~g~l~~~i~~visn~~~--~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 94 EDHCLGDLLWRWYSGELDAEIALVISNHED--LRSLVERFGIPFHYIPA 140 (280)
T ss_pred CChhHHHHHHHHHcCCCCcEEEEEEEcChh--HHHHHHHhCCCEEEcCC
Confidence 345678888887642111245667788533 33369999999988754
No 354
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.67 E-value=1.7e+02 Score=23.93 Aligned_cols=72 Identities=10% Similarity=0.260 Sum_probs=46.9
Q ss_pred cccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037221 249 WPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLV 328 (342)
Q Consensus 249 ~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i 328 (342)
.|+.-.+..+|+.+++ ..-++. .. ..+.+.+.+.+|+.|.. +-+-.+.++++.+.++ |-.....+.+++
T Consensus 78 yPWt~~~L~aa~el~e-e~eeLs---~d--eke~~~~sl~dL~~d~P--kT~vA~~rfKk~~~K~---g~~v~~~~~dIl 146 (158)
T PF10083_consen 78 YPWTENALEAANELIE-EDEELS---PD--EKEQFKESLPDLTKDTP--KTKVAATRFKKILSKA---GSIVGDAIRDIL 146 (158)
T ss_pred CchHHHHHHHHHHHHH-HhhcCC---HH--HHHHHHhhhHHHhhcCC--ccHHHHHHHHHHHHHH---hHHHHHHHHHHH
Confidence 4888888889988853 222222 22 66789999999987643 2677788888888874 333344455555
Q ss_pred HHH
Q 037221 329 NES 331 (342)
Q Consensus 329 ~~l 331 (342)
-++
T Consensus 147 Vdv 149 (158)
T PF10083_consen 147 VDV 149 (158)
T ss_pred HHH
Confidence 444
No 355
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.53 E-value=68 Score=28.98 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCCcceeeccCCchhHHHhh---cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHHcCC
Q 037221 221 HPSIGGFLTHSGWGSTIENLS---AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELLEGE 294 (342)
Q Consensus 221 ~~~~~~~ItHgG~~s~~eal~---~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll~~~ 294 (342)
.+++ +|+-||-||+++++. .++|++.+|...- |.=. .+ +++++.+++.++++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~l------------GFl~----~~--~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGTL------------GFLT----EV--EPEETFFALSRLLEGD 113 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCCC------------Cccc----cC--CHHHHHHHHHHHHcCC
Confidence 3454 999999999999884 4568887775210 1000 24 5666777777776553
No 356
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=22.52 E-value=1.8e+02 Score=28.97 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-----CHHHHhCCCCCcceeeccCCc--
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-----PQEEVLNHPSIGGFLTHSGWG-- 234 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-----pq~~lL~~~~~~~~ItHgG~~-- 234 (342)
+.+.|.+.+= ..||..-|+.. ..+++++...+.+++........ -+..+-..+.+ +++|.|-|
T Consensus 8 l~~~L~~~GV-~~vFg~pG~~~-------~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv--~~~t~GPG~~ 77 (549)
T PRK06457 8 IIRVLEDNGI-QRIYGIPGDSI-------DPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSA--CMGTSGPGSI 77 (549)
T ss_pred HHHHHHHcCC-CEEEEcCCcch-------HHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeE--EEeCCCCchh
Confidence 4455554432 23555555543 44566666555444433211110 22333334454 89999865
Q ss_pred ----hhHHHhhcCCcEEecc
Q 037221 235 ----STIENLSAGVPMICWP 250 (342)
Q Consensus 235 ----s~~eal~~GvP~i~~P 250 (342)
.+.+|...++|+|++-
T Consensus 78 N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 78 HLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred hhHHHHHHHHhcCCCEEEEe
Confidence 6679999999999883
No 357
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.51 E-value=5.2e+02 Score=23.40 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEec
Q 037221 42 YIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 90 (342)
....++.|++..+...-+...-+||+|.- .+..+|+.+|||+..+..
T Consensus 99 ~g~nl~al~~~~~~~~~~~~i~~visn~~--~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK13011 99 FDHCLNDLLYRWRIGELPMDIVGVVSNHP--DLEPLAAWHGIPFHHFPI 145 (286)
T ss_pred CcccHHHHHHHHHcCCCCcEEEEEEECCc--cHHHHHHHhCCCEEEeCC
Confidence 34457888887765322235666778742 344459999999998753
No 358
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.30 E-value=3.2e+02 Score=26.15 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=37.6
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCC-----CC----CHHHHhCCCCCcceeeccCCc
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPD-----LF----PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~-----~~----pq~~lL~~~~~~~~ItHgG~~ 234 (342)
.+.+-.|.+|.++ +.+++.+...|.+++..-... .. +..++|+.+|+ ++-|+-.+
T Consensus 151 gktvGIiG~G~IG-------~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDi--Vslh~Plt 214 (409)
T PRK11790 151 GKTLGIVGYGHIG-------TQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDV--VSLHVPET 214 (409)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCE--EEEcCCCC
Confidence 4567889999887 556777777888776432111 01 67888888888 88887654
No 359
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.18 E-value=3.2e+02 Score=24.25 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhhCCCCCCccEEEECCCcc--hHHHHHHHhCCceEEEecc
Q 037221 42 YIDHNRAFILFVNQNGNQPAVSCIISDGFMP--FTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~~ 91 (342)
....+.++++.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 202 s~~~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 202 SPADLKRLIDLAKE----KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 35566677777765 5789999987554 5567899999998887644
No 360
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.14 E-value=1.7e+02 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=20.0
Q ss_pred CccEEEECCCcch-HHHHHHHhCCceEEEec
Q 037221 61 AVSCIISDGFMPF-TIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 61 ~pD~vI~D~~~~~-~~~~A~~lgiP~v~~~~ 90 (342)
+||+||....... ...--+..|+|++.+..
T Consensus 60 ~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 60 KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 8999997653322 33445678999887753
No 361
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.14 E-value=1.8e+02 Score=28.99 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHhhCCCCCCccEEEECCCcchHHHHHHHhCCceEEEecc
Q 037221 41 FYIDHNRAFILFVNQNGNQPAVSCIISDGFMPFTIEAAQQLGLSVVMFLTI 91 (342)
Q Consensus 41 ~~~~~~~~li~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 91 (342)
.....++..++++++ ...++||.|. .+..+|+++|++.+.+.+.
T Consensus 129 ~~~~e~~~~~~~l~~----~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 129 VTEEDARSCVNDLRA----RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cCHHHHHHHHHHHHH----CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 556677888888876 6789999996 5678999999999988764
No 362
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=22.00 E-value=2.4e+02 Score=24.87 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHhCC---CCCcceeeccCCchhHHHhhcCCcEE
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLFPQEEVLNH---PSIGGFLTHSGWGSTIENLSAGVPMI 247 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~pq~~lL~~---~~~~~~ItHgG~~s~~eal~~GvP~i 247 (342)
..+.|+.++=.......+...++++.++..+...+..++..+ ..+|.- ..--+++.-||.|-+.-+.-+|+|+=
T Consensus 144 G~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p~---~~vlgvpv~~~~~Giv~~GG~Npia~~~E~Gi~i~ 220 (236)
T PF01995_consen 144 GEGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEPN---EPVLGVPVEPGMVGIVVIGGLNPIAAAVEAGIPIE 220 (236)
T ss_dssp SSSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--TT-----BTTB---TTEEEEEEE-TTHHHHHHHHTT---E
T ss_pred CCceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCCC---CcccCCccCCCeEEEEEEecCcHHHHHHHcCCeeE
Confidence 456788888777777889999999999999988777776532 333322 23335788899999999888888875
Q ss_pred ecc
Q 037221 248 CWP 250 (342)
Q Consensus 248 ~~P 250 (342)
.-+
T Consensus 221 ~~~ 223 (236)
T PF01995_consen 221 IKA 223 (236)
T ss_dssp EEE
T ss_pred eee
Confidence 544
No 363
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=21.98 E-value=5.7e+02 Score=23.87 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC------------CHHHHhCCCCCcceeeccCCchhHH
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF------------PQEEVLNHPSIGGFLTHSGWGSTIE 238 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------------pq~~lL~~~~~~~~ItHgG~~s~~e 238 (342)
.+.+..+.+|+++ ..++.-|...+..+....+.... ...+++..+++ +|-
T Consensus 162 gK~vgilG~G~IG-------~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~--ivv--------- 223 (336)
T KOG0069|consen 162 GKTVGILGLGRIG-------KAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDV--IVV--------- 223 (336)
T ss_pred CCEEEEecCcHHH-------HHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCE--EEE---------
Confidence 4668899999987 45566666666444433322111 45556666665 444
Q ss_pred HhhcCCcEEeccccc--chhhHHHHHHhHhceEEEecc-----cccCCHhHHHHHHH
Q 037221 239 NLSAGVPMICWPFEG--DQMTNCRYTYKERGIGMEING-----DEDGIRNVIQKSVR 288 (342)
Q Consensus 239 al~~GvP~i~~P~~~--DQ~~na~~~~~~~G~G~~l~~-----~~~~~~~~l~~~i~ 288 (342)
++|+.. ..-.|...+ ++++-|..+-. -+ +.+.+.++++
T Consensus 224 ---------~~pLt~~T~~liNk~~~-~~mk~g~vlVN~aRG~ii--de~~l~eaL~ 268 (336)
T KOG0069|consen 224 ---------NCPLTKETRHLINKKFI-EKMKDGAVLVNTARGAII--DEEALVEALK 268 (336)
T ss_pred ---------ecCCCHHHHHHhhHHHH-HhcCCCeEEEeccccccc--cHHHHHHHHh
Confidence 445543 345688888 78887766532 45 6666666664
No 364
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.90 E-value=1e+02 Score=27.54 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=25.4
Q ss_pred CCccEEE-ECCC-cchHHHHHHHhCCceEEEecchh
Q 037221 60 PAVSCII-SDGF-MPFTIEAAQQLGLSVVMFLTISA 93 (342)
Q Consensus 60 ~~pD~vI-~D~~-~~~~~~~A~~lgiP~v~~~~~~~ 93 (342)
..||+|| .|+- ...+..=|.++|||++.+.-+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 3689986 6653 33678889999999999875443
No 365
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.89 E-value=88 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=21.5
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||++|...+. ..+|+++|||++.+.
T Consensus 357 ~~pdliig~s~~---~~~a~~lgip~~~~~ 383 (415)
T cd01977 357 LKPDIILTGPRV---GELVKKLHVPYVNIH 383 (415)
T ss_pred cCCCEEEecCcc---chhhhhcCCCEEecc
Confidence 379999988633 368999999998863
No 366
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.76 E-value=92 Score=28.05 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=37.0
Q ss_pred HHHhCCCCCcceeeccCCchhHHHhh----cCCcEEecccccchhhHHHHHHhHhceEEEecccccCCHhHHHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTHSGWGSTIENLS----AGVPMICWPFEGDQMTNCRYTYKERGIGMEINGDEDGIRNVIQKSVRELL 291 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~l~~~i~~ll 291 (342)
.++...+++ +|+=||-||++.++. .++|++.+-.. . +|-.. .+ +++++.+.+.+++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G------------~--lGFL~--~~--~~~~~~~~l~~~~ 96 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG------------N--LGFLT--DI--DPKNAYEQLEACL 96 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC------------C--Ccccc--cC--CHHHHHHHHHHHH
Confidence 444445666 999999999998765 36788776321 1 11111 24 6677777777777
Q ss_pred cC
Q 037221 292 EG 293 (342)
Q Consensus 292 ~~ 293 (342)
++
T Consensus 97 ~~ 98 (272)
T PRK02231 97 ER 98 (272)
T ss_pred hc
Confidence 63
No 367
>PRK08322 acetolactate synthase; Reviewed
Probab=21.74 E-value=1.8e+02 Score=28.89 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC-------CHHHHhCCCCCcceeeccCCc
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF-------PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~-------pq~~lL~~~~~~~~ItHgG~~ 234 (342)
+.+.|...+= ..||...|+.. ..+++++.+.+.+++-.. ++. -+..+=. +.+++++|.|-|
T Consensus 7 l~~~L~~~Gv-~~vFg~pG~~~-------~~l~dal~~~~i~~i~~~--hE~~A~~~A~gyar~tg--~~gv~~~t~GpG 74 (547)
T PRK08322 7 FVKCLENEGV-EYIFGIPGEEN-------LDLLEALRDSSIKLILTR--HEQGAAFMAATYGRLTG--KAGVCLSTLGPG 74 (547)
T ss_pred HHHHHHHcCC-CEEEeCCCcch-------HHHHHHHHhcCCcEEEec--cHHHHHHHHHHHHHhhC--CCEEEEECCCcc
Confidence 4455554432 24555555543 345666654444444322 211 1222222 344599998855
Q ss_pred ------hhHHHhhcCCcEEecc
Q 037221 235 ------STIENLSAGVPMICWP 250 (342)
Q Consensus 235 ------s~~eal~~GvP~i~~P 250 (342)
.+.+|...++|+|++-
T Consensus 75 ~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 75 ATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred HhHHHHHHHHHhhcCCCEEEEe
Confidence 6779999999999884
No 368
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=21.65 E-value=2.3e+02 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=19.6
Q ss_pred CCccEEEECCC----cchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGF----MPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~----~~~~~~~A~~lgiP~v~~~ 89 (342)
.++|.||.... .......+...|||+|.+.
T Consensus 53 ~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 53 QGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cCCCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 47898775432 2233456778899999874
No 369
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=21.53 E-value=2.8e+02 Score=22.92 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCccEEEECCCcc--hHHHHHHHh------CCceEEEecc
Q 037221 60 PAVSCIISDGFMP--FTIEAAQQL------GLSVVMFLTI 91 (342)
Q Consensus 60 ~~pD~vI~D~~~~--~~~~~A~~l------giP~v~~~~~ 91 (342)
.|||+||+..-.. ....+|..+ |.+.+.+.+.
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 4899999876444 556688888 9999988653
No 370
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.51 E-value=1.6e+02 Score=27.90 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=44.9
Q ss_pred ceEEEecccccCCHhHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 037221 267 GIGMEINGDEDGIRNVIQKSVRELLEGEK----GKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESLLP 334 (342)
Q Consensus 267 G~G~~l~~~~~~~~~~l~~~i~~ll~~~~----~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~~~ 334 (342)
.||..+...+ +..++...++.++++.. .+++|.-+++|+++|++ ..+...+..+++++.+.
T Consensus 75 NCg~~~r~EV--sSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~-----Dp~lsLi~~l~~klk~~ 139 (462)
T KOG2199|consen 75 NCGKRFRLEV--SSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK-----DPSLSLISALYKKLKEE 139 (462)
T ss_pred hcchHHHHHH--hhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc-----CcchhHHHHHHHHHHHc
Confidence 5555555567 88888999999988632 23577778888888886 55567889999998763
No 371
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=21.40 E-value=2.4e+02 Score=23.62 Aligned_cols=44 Identities=20% Similarity=0.076 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcc--hHHHHHHHhCCceEEEecchhh
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMP--FTIEAAQQLGLSVVMFLTISAC 94 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 94 (342)
.++.+|+.. .++.-+|.|+|.- ....+|..+|-.++.+-....+
T Consensus 180 l~~~lI~~~------t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y 225 (231)
T PF01555_consen 180 LIERLIKAS------TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEY 225 (231)
T ss_dssp HHHHHHHHH------S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHH
T ss_pred HHHHHHHhh------hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHH
Confidence 356667665 3567788999877 5577999999999998766544
No 372
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.37 E-value=1.1e+02 Score=30.12 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEE
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMF 88 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 88 (342)
.+||++|.+. ....+|+++|||++..
T Consensus 392 ~~pDliig~s---~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 392 AKADIMLSGG---RSQFIALKAGMPWLDI 417 (475)
T ss_pred cCCCEEEecC---chhhhhhhcCCCEEEc
Confidence 4799999984 6778999999999854
No 373
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.30 E-value=6.8e+02 Score=23.92 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=48.6
Q ss_pred CHHHHhCCCCCcceeeccCCchhHH-------------HhhcCCcEEecccccc-------hhhHHHHHHhHhceEEEec
Q 037221 214 PQEEVLNHPSIGGFLTHSGWGSTIE-------------NLSAGVPMICWPFEGD-------QMTNCRYTYKERGIGMEIN 273 (342)
Q Consensus 214 pq~~lL~~~~~~~~ItHgG~~s~~e-------------al~~GvP~i~~P~~~D-------Q~~na~~~~~~~G~G~~l~ 273 (342)
.+-++...+++ .+|.-|-+||+.- ++.+++|++++|-+.. -..|..++ .++|+-+.-.
T Consensus 75 ~hi~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~ii~P 152 (399)
T PRK05579 75 GHIELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATL-RSRGVEIIGP 152 (399)
T ss_pred chhhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHH-HHCCCEEECC
Confidence 34455555665 4566666665542 3567999999995542 34577778 7778776543
Q ss_pred c-------------cccCCHhHHHHHHHHHHc
Q 037221 274 G-------------DEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 274 ~-------------~~~~~~~~l~~~i~~ll~ 292 (342)
. -. ++++|...+.+.+.
T Consensus 153 ~~g~la~~~~g~gr~~--~~~~I~~~~~~~~~ 182 (399)
T PRK05579 153 ASGRLACGDVGPGRMA--EPEEIVAAAERALS 182 (399)
T ss_pred CCccccCCCcCCCCCC--CHHHHHHHHHHHhh
Confidence 1 23 78888888877764
No 374
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=21.30 E-value=81 Score=22.82 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred CHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 037221 279 IRNVIQKSVRELLEGEKGKQMRNKASEWKKLVVEAAAPDGPSSKNLVKLVNESL 332 (342)
Q Consensus 279 ~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~i~~l~ 332 (342)
..+.|.+.++.-|.... .++..+.+.+...+. +|...-.++++++.+.
T Consensus 15 e~~~L~~~L~~rL~e~G---W~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~ 62 (86)
T PF10163_consen 15 EYERLKELLRQRLIECG---WRDEVRQLCREIIRE---RGIDNLTFEDLLEEIT 62 (86)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCC---hHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHH
Confidence 66788888888887665 888888887776663 2333344566666653
No 375
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=21.26 E-value=95 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=27.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHh-----cCCCCEEEEECCCC
Q 037221 173 SVIYVNFGIAIVVKKQQFIEVAMGLA-----NSNHPFLWIIRPDL 212 (342)
Q Consensus 173 ~~V~vs~Gs~~~~~~~~~~~~~~al~-----~~~~~~iw~~~~~~ 212 (342)
.+++|+.|+.....-..+..++.... .....++|.++...
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~ 47 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD 47 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh
Confidence 47999999987666667777776665 23458899997654
No 376
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=21.18 E-value=6.9e+02 Score=24.64 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=68.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhcC--C---C-CEEEEE-CCCCC--CHHHHhCCCCCcceeeccCCchhHHHhhcCC
Q 037221 174 VIYVNFGIAIVVKKQQFIEVAMGLANS--N---H-PFLWII-RPDLF--PQEEVLNHPSIGGFLTHSGWGSTIENLSAGV 244 (342)
Q Consensus 174 ~V~vs~Gs~~~~~~~~~~~~~~al~~~--~---~-~~iw~~-~~~~~--pq~~lL~~~~~~~~ItHgG~~s~~eal~~Gv 244 (342)
.||++.||-...+.+.+..+++.+... + . .+-+-. +++.+ .....|....+ -=-+-|..|..+....
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv--~RISIGvQS~~d~vLk-- 296 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGV--DRISINPQTMNDETLK-- 296 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEcCCcCCHHHHH--
Confidence 588888888778888999988887542 2 1 222222 34444 45555655544 2223455565544433
Q ss_pred cEEecccccchhhHHHHHHhHhce-EEEecc-----cccCCHhHHHHHHHHHHc
Q 037221 245 PMICWPFEGDQMTNCRYTYKERGI-GMEING-----DEDGIRNVIQKSVRELLE 292 (342)
Q Consensus 245 P~i~~P~~~DQ~~na~~~~~~~G~-G~~l~~-----~~~~~~~~l~~~i~~ll~ 292 (342)
.+.-++..++..++.+...+.|+ -+.++- .. +.+++.+.++.+..
T Consensus 297 -~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE--t~ed~~~tl~~l~~ 347 (488)
T PRK08207 297 -AIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE--GLEEVKHTLEEIEK 347 (488)
T ss_pred -HhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC--CHHHHHHHHHHHHh
Confidence 22456677888888766577777 455542 44 78888888887753
No 377
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=21.14 E-value=2.4e+02 Score=23.25 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCccEEEEC-C-CcchHHHHHHHhCCceEEE
Q 037221 60 PAVSCIISD-G-FMPFTIEAAQQLGLSVVMF 88 (342)
Q Consensus 60 ~~pD~vI~D-~-~~~~~~~~A~~lgiP~v~~ 88 (342)
..+|+|++= . -...+..+|..+|+|++.+
T Consensus 50 ~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 50 ADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred CCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 468999832 2 3457888999999998864
No 378
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.11 E-value=1.4e+02 Score=29.01 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=21.6
Q ss_pred CCccEEEECCCcchHHHHHHHhCCceEEEe
Q 037221 60 PAVSCIISDGFMPFTIEAAQQLGLSVVMFL 89 (342)
Q Consensus 60 ~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 89 (342)
.+||++|... ....+|+++|||++.+.
T Consensus 394 ~~pDl~ig~~---~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAGG---KERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEcc---chHHHHHhcCCCEEEcc
Confidence 4799999874 45778889999998764
No 379
>CHL00067 rps2 ribosomal protein S2
Probab=21.09 E-value=1.1e+02 Score=26.77 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=25.7
Q ss_pred CCccEEE-ECCCc-chHHHHHHHhCCceEEEecchhh
Q 037221 60 PAVSCII-SDGFM-PFTIEAAQQLGLSVVMFLTISAC 94 (342)
Q Consensus 60 ~~pD~vI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~~ 94 (342)
..||+|| .|+-. ..+..=|..+|||++.+.-+..-
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4689986 56533 36788899999999998755443
No 380
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.90 E-value=1.5e+02 Score=28.47 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.6
Q ss_pred CccEEEECCCcchHHHHHHHhCCceEEE
Q 037221 61 AVSCIISDGFMPFTIEAAQQLGLSVVMF 88 (342)
Q Consensus 61 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 88 (342)
+||++|.+. +...+|+++|||++.+
T Consensus 360 ~~dllig~s---~~~~~A~~~~ip~~~~ 384 (417)
T cd01966 360 EADLLVTNS---HGRQAAERLGIPLLRA 384 (417)
T ss_pred cCCEEEEcc---hhHHHHHhcCCCEEEe
Confidence 489999886 6778999999999875
No 381
>PRK13243 glyoxylate reductase; Reviewed
Probab=20.80 E-value=3.9e+02 Score=24.73 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=35.0
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC------------CHHHHhCCCCCcceeeccCCc
Q 037221 170 LPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF------------PQEEVLNHPSIGGFLTHSGWG 234 (342)
Q Consensus 170 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~------------pq~~lL~~~~~~~~ItHgG~~ 234 (342)
..+.+..|.+|.++ +.+++.+...+.+++ .+..... +..++++.+++ ++.|.-.+
T Consensus 149 ~gktvgIiG~G~IG-------~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~l~ell~~aDi--V~l~lP~t 215 (333)
T PRK13243 149 YGKTIGIIGFGRIG-------QAVARRAKGFGMRIL-YYSRTRKPEAEKELGAEYRPLEELLRESDF--VSLHVPLT 215 (333)
T ss_pred CCCEEEEECcCHHH-------HHHHHHHHHCCCEEE-EECCCCChhhHHHcCCEecCHHHHHhhCCE--EEEeCCCC
Confidence 35678999999987 556777777787765 3332110 44566677776 66666543
No 382
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=20.75 E-value=1.1e+02 Score=28.18 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=48.7
Q ss_pred hhHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCC-CCHHHHhCCCCCcceeeccCCchhH
Q 037221 159 ETECLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDL-FPQEEVLNHPSIGGFLTHSGWGSTI 237 (342)
Q Consensus 159 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~-~pq~~lL~~~~~~~~ItHgG~~s~~ 237 (342)
++.+.+.|..++.+---++ +......+..+.+.+.|...|.. |..-..+ ..|. +..+++ +|+-||-||++
T Consensus 49 pdql~q~L~srgtdv~~ll---~~hKvhkn~~~~~~~~l~k~gie--sklv~R~~lsq~--i~waD~--VisvGGDGTfL 119 (395)
T KOG4180|consen 49 PDQLLQYLESRGTDVGRLL---SKHKVHKNAIKFCQEELSKAGIE--SKLVSRNDLSQP--IRWADM--VISVGGDGTFL 119 (395)
T ss_pred HHHHHHHHHhcCchHHHHH---HHhHHHHHHHHHHHHHHhhCCcc--eeeeehhhccCc--CchhhE--EEEecCcccee
Confidence 5567777776532200000 00112345567777888877766 4432211 1333 777887 99999999998
Q ss_pred HHhh----cCCcEEec
Q 037221 238 ENLS----AGVPMICW 249 (342)
Q Consensus 238 eal~----~GvP~i~~ 249 (342)
-|.. --+|+|++
T Consensus 120 ~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 120 LAASRVIDDSKPVIGV 135 (395)
T ss_pred ehhhhhhccCCceeee
Confidence 7765 56788765
No 383
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.65 E-value=5e+02 Score=24.05 Aligned_cols=87 Identities=9% Similarity=0.030 Sum_probs=44.8
Q ss_pred HHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEE-EECCCCC-----CHHHHhCCCCCcceeeccCCch
Q 037221 162 CLRWLDSKLPNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLW-IIRPDLF-----PQEEVLNHPSIGGFLTHSGWGS 235 (342)
Q Consensus 162 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw-~~~~~~~-----pq~~lL~~~~~~~~ItHgG~~s 235 (342)
+.+++.... +.++.|+ |.... ......+.+.|+..+..+.+ .+.++.. .-.+.+...+.+++|.=||...
T Consensus 14 l~~~~~~~~-~r~livt-~~~~~--~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 89 (351)
T cd08170 14 LGEYLARLG-KRALIIA-DEFVL--DLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKT 89 (351)
T ss_pred HHHHHHHhC-CeEEEEE-CHHHH--HHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchh
Confidence 444454433 3455555 44332 25667778888877655432 2333221 1122232223333777666444
Q ss_pred hHHH----hhcCCcEEecccc
Q 037221 236 TIEN----LSAGVPMICWPFE 252 (342)
Q Consensus 236 ~~ea----l~~GvP~i~~P~~ 252 (342)
+--| +..++|+|.+|..
T Consensus 90 iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCCc
Confidence 3332 3358999999975
No 384
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=20.35 E-value=1.9e+02 Score=25.72 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHhCCCCCcceeeccCCchhH-HHhhcCCcEEecccccchhhHHHHHHhHhceE-EEe-cc-cccCCHhHHHHHHHHHH
Q 037221 216 EEVLNHPSIGGFLTHSGWGSTI-ENLSAGVPMICWPFEGDQMTNCRYTYKERGIG-MEI-NG-DEDGIRNVIQKSVRELL 291 (342)
Q Consensus 216 ~~lL~~~~~~~~ItHgG~~s~~-eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~G-~~l-~~-~~~~~~~~l~~~i~~ll 291 (342)
.+.|+.+.| ++|-=||-||.. ||| .+-|+| +.| |. ++ .-..+.+-+..++
T Consensus 25 lekl~~~~V-~VvGiGGVGSw~veAL-----------------------aRsGig~itlID~D~v--~vTN~NRQi~A~~ 78 (263)
T COG1179 25 LEKLKQAHV-CVVGIGGVGSWAVEAL-----------------------ARSGIGRITLIDMDDV--CVTNTNRQIHALL 78 (263)
T ss_pred HHHHhhCcE-EEEecCchhHHHHHHH-----------------------HHcCCCeEEEEecccc--cccccchhhHhhh
Confidence 455666666 678888888864 555 466888 333 33 56 7777888888887
Q ss_pred cCChHHHHHHHHHHHHHHHHH
Q 037221 292 EGEKGKQMRNKASEWKKLVVE 312 (342)
Q Consensus 292 ~~~~~~~~r~~a~~l~~~~~~ 312 (342)
.+-. +.++.-+++.+++
T Consensus 79 ~~iG----k~Kv~vm~eri~~ 95 (263)
T COG1179 79 GDIG----KPKVEVMKERIKQ 95 (263)
T ss_pred hhcc----cHHHHHHHHHHHh
Confidence 7653 4555555555553
No 385
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.35 E-value=5.7e+02 Score=25.84 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhcCCCCEEEEECCCCC---------------CHHHHhCCCCCcceeeccCCch
Q 037221 171 PNSVIYVNFGIAIVVKKQQFIEVAMGLANSNHPFLWIIRPDLF---------------PQEEVLNHPSIGGFLTHSGWGS 235 (342)
Q Consensus 171 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~---------------pq~~lL~~~~~~~~ItHgG~~s 235 (342)
.+|.-|++.|..+.+.-..=..+-.++...+.+++...+.... |..-+ ++..+|++.
T Consensus 418 ~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~v--------V~NN~~y~~ 489 (595)
T PRK09107 418 EEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIF--------ILNNQYMGM 489 (595)
T ss_pred CCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEE--------EEeCCccHH
Q ss_pred hH--HHhhcCCcEEecccccchhhHHHHHHhHhce-EEEecccccCCHhHHHHHHHHHHcCCh
Q 037221 236 TI--ENLSAGVPMICWPFEGDQMTNCRYTYKERGI-GMEINGDEDGIRNVIQKSVRELLEGEK 295 (342)
Q Consensus 236 ~~--eal~~GvP~i~~P~~~DQ~~na~~~~~~~G~-G~~l~~~~~~~~~~l~~~i~~ll~~~~ 295 (342)
+. +.+.+|.+ .........+..++.. +.+|+ |..++ +.++|.+++++.+..+.
T Consensus 490 i~~~q~~~~~~~-~~~~~~~~~~d~~~lA-~a~G~~~~~v~-----~~~el~~al~~a~~~~~ 545 (595)
T PRK09107 490 VRQWQQLLHGNR-LSHSYTEAMPDFVKLA-EAYGAVGIRCE-----KPGDLDDAIQEMIDVDK 545 (595)
T ss_pred HHHHHHHHhCCc-cccccCCCCCCHHHHH-HHCCCeEEEEC-----CHHHHHHHHHHHHhCCC
No 386
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=20.32 E-value=2.8e+02 Score=24.95 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCC--------CHHHHhCCCCCcceeeccCCchhHHHhhc--CCcEEecccc
Q 037221 185 VKKQQFIEVAMGLANSNHPFLWIIRPDLF--------PQEEVLNHPSIGGFLTHSGWGSTIENLSA--GVPMICWPFE 252 (342)
Q Consensus 185 ~~~~~~~~~~~al~~~~~~~iw~~~~~~~--------pq~~lL~~~~~~~~ItHgG~~s~~eal~~--GvP~i~~P~~ 252 (342)
...+..+++.+++...+...||..++..- +...+-+++.. ||-.....+++-+++. |++.+--|..
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGANRLLPYLDYDLIRANPKI--FVGYSDITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHHhhhhCCHHHHhhCCeE--EEEecHHHHHHHHHHHhcCceEEECccc
Confidence 34677788999999999999999866442 45555577877 9999888888888763 7887777754
No 387
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.26 E-value=2.1e+02 Score=28.66 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=22.0
Q ss_pred CcceeeccCCc------hhHHHhhcCCcEEecc
Q 037221 224 IGGFLTHSGWG------STIENLSAGVPMICWP 250 (342)
Q Consensus 224 ~~~~ItHgG~~------s~~eal~~GvP~i~~P 250 (342)
++++++|.|-| .+.+|...++|+|++-
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44499999866 6779999999999884
No 388
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.18 E-value=6.5e+02 Score=23.55 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=55.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhcC-C----CCEEEEECCCCC--CHHHHhCCCCCcceeeccCCchhHHHhhcCCc
Q 037221 173 SVIYVNFGIAIVVKKQQFIEVAMGLANS-N----HPFLWIIRPDLF--PQEEVLNHPSIGGFLTHSGWGSTIENLSAGVP 245 (342)
Q Consensus 173 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~----~~~iw~~~~~~~--pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP 245 (342)
..||+..||-...+.+.+..+++.+.+. + ..+-.-..++.+ .....|....+ --=+-|..|..+.+..
T Consensus 61 ~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~--~rvslGvQS~~~~~L~--- 135 (375)
T PRK05628 61 STVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGF--TRVSLGMQSAAPHVLA--- 135 (375)
T ss_pred eEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCC--CEEEEecccCCHHHHH---
Confidence 3577777777767778888888777642 2 222222244433 23334433222 2223344444433322
Q ss_pred EEecccccchhhHHHHHHhHhceE-EEecc-----cccCCHhHHHHHHHHHH
Q 037221 246 MICWPFEGDQMTNCRYTYKERGIG-MEING-----DEDGIRNVIQKSVRELL 291 (342)
Q Consensus 246 ~i~~P~~~DQ~~na~~~~~~~G~G-~~l~~-----~~~~~~~~l~~~i~~ll 291 (342)
.+.-++..++..++.....+.|+. +.++- .. |.+++.+.++.++
T Consensus 136 ~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq--t~~~~~~tl~~~~ 185 (375)
T PRK05628 136 VLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE--SDDDWRASLDAAL 185 (375)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC--CHHHHHHHHHHHH
Confidence 122233445555554333555655 44441 34 6677777776664
No 389
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.08 E-value=3.4e+02 Score=23.54 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=19.1
Q ss_pred CCccEEEECCCcch--HHHHHHHhCCceEEEec
Q 037221 60 PAVSCIISDGFMPF--TIEAAQQLGLSVVMFLT 90 (342)
Q Consensus 60 ~~pD~vI~D~~~~~--~~~~A~~lgiP~v~~~~ 90 (342)
.++|.||....... ........|+|++.+..
T Consensus 54 ~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~~~ 86 (269)
T cd06297 54 YLTDGLLLASYDLTERLAERRLPTERPVVLVDA 86 (269)
T ss_pred cCCCEEEEecCccChHHHHHHhhcCCCEEEEcc
Confidence 47898886553322 22334567999998753
No 390
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.06 E-value=7e+02 Score=23.08 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCCCCccEEEECCCcchH-HHHHHHhCCceEEEecchhhHhhhhhhhhhhhccccccccceEEEEcCc
Q 037221 45 HNRAFILFVNQNGNQPAVSCIISDGFMPFT-IEAAQQLGLSVVMFLTISACSFMGYKQFRTLKEKGLVASKASGIIFHTF 123 (342)
Q Consensus 45 ~~~~li~~~~~~~~~~~pD~vI~D~~~~~~-~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (342)
...++.+.+.. .+||+||.=. .+.+ ..+++.-+||.+....+-+... .+..-++ ......+-++..
T Consensus 76 ~a~~iarql~~----~~~dviv~i~-tp~Aq~~~s~~~~iPVV~aavtd~v~a----~Lv~~~~----~pg~NvTGvsD~ 142 (322)
T COG2984 76 TAAQIARQLVG----DKPDVIVAIA-TPAAQALVSATKTIPVVFAAVTDPVGA----KLVKSLE----QPGGNVTGVSDL 142 (322)
T ss_pred HHHHHHHHhhc----CCCcEEEecC-CHHHHHHHHhcCCCCEEEEccCchhhc----cCCcccc----CCCCceeecCCc
Confidence 34455555543 5889999875 5544 4566677899987544322221 1110000 112233334443
Q ss_pred hhhhHHHHHHHhhhCCceeeccccccc
Q 037221 124 DALEVQVLDAISAMFPNLFTIGPLQLL 150 (342)
Q Consensus 124 ~~l~~~~~~~~~~~~p~~~~vGpl~~~ 150 (342)
...+ ..++..+..+|++.-+|-++.+
T Consensus 143 ~~v~-q~i~lik~~~Pnak~Igv~Y~p 168 (322)
T COG2984 143 LPVA-QQIELIKALLPNAKSIGVLYNP 168 (322)
T ss_pred chHH-HHHHHHHHhCCCCeeEEEEeCC
Confidence 3232 3456667777888887777644
Done!