Query 037222
Match_columns 904
No_of_seqs 499 out of 4092
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7E-101 2E-105 901.7 51.1 852 1-896 1-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-62 2.5E-67 612.8 53.0 642 158-865 184-913 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.5E-45 1.6E-49 389.6 18.7 280 163-445 1-284 (287)
4 PLN03210 Resistant to P. syrin 99.8 9.5E-20 2.1E-24 228.4 19.0 333 518-882 533-907 (1153)
5 PLN00113 leucine-rich repeat r 99.8 6.3E-20 1.4E-24 230.2 17.4 308 516-856 117-439 (968)
6 PLN00113 leucine-rich repeat r 99.8 1E-19 2.2E-24 228.5 17.3 309 518-856 70-391 (968)
7 KOG0444 Cytoskeletal regulator 99.8 1.4E-21 3.1E-26 207.9 -3.2 352 498-887 35-403 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 1.2E-21 2.6E-26 208.4 -5.3 320 516-876 31-368 (1255)
9 KOG4194 Membrane glycoprotein 99.8 4E-20 8.7E-25 196.1 2.2 314 507-864 114-434 (873)
10 KOG4194 Membrane glycoprotein 99.8 1E-19 2.2E-24 193.0 4.3 310 516-875 101-421 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 2.2E-17 4.7E-22 168.2 -3.6 323 513-863 202-544 (565)
12 KOG0618 Serine/threonine phosp 99.5 3E-16 6.5E-21 176.1 -4.7 59 517-578 68-127 (1081)
13 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.5E-18 161.0 14.8 251 499-832 205-456 (788)
14 KOG0472 Leucine-rich repeat pr 99.5 1.1E-16 2.5E-21 163.0 -9.0 252 539-867 45-296 (565)
15 KOG4658 Apoptotic ATPase [Sign 99.5 2.3E-14 5.1E-19 170.5 6.7 317 506-864 534-866 (889)
16 PRK04841 transcriptional regul 99.4 9.1E-12 2E-16 155.9 23.8 289 158-490 14-332 (903)
17 KOG0618 Serine/threonine phosp 99.4 2.4E-14 5.2E-19 161.0 -0.0 296 518-865 220-516 (1081)
18 KOG0617 Ras suppressor protein 99.4 1.3E-14 2.7E-19 131.2 -4.9 157 510-688 26-185 (264)
19 PRK15387 E3 ubiquitin-protein 99.4 3.4E-12 7.3E-17 148.9 12.4 257 519-860 203-459 (788)
20 PRK15370 E3 ubiquitin-protein 99.3 6.3E-12 1.4E-16 147.7 12.4 96 540-649 200-295 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 2.9E-12 6.3E-17 150.5 9.1 133 502-650 185-317 (754)
22 PRK00411 cdc6 cell division co 99.3 6.9E-10 1.5E-14 124.5 27.6 294 157-470 29-357 (394)
23 COG2909 MalT ATP-dependent tra 99.3 1.3E-10 2.7E-15 131.4 20.8 292 159-492 20-340 (894)
24 KOG4237 Extracellular matrix p 99.3 3.6E-13 7.7E-18 137.8 -1.2 62 723-795 269-332 (498)
25 KOG0617 Ras suppressor protein 99.3 2.1E-13 4.6E-18 123.4 -3.7 138 529-688 23-162 (264)
26 TIGR03015 pepcterm_ATPase puta 99.2 3.9E-09 8.5E-14 111.8 24.1 182 177-366 41-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.2 1.2E-08 2.7E-13 113.2 27.9 296 158-471 15-350 (365)
28 PF01637 Arch_ATPase: Archaeal 99.2 5.7E-11 1.2E-15 123.1 8.5 196 160-361 1-233 (234)
29 cd00116 LRR_RI Leucine-rich re 99.1 3.6E-11 7.9E-16 131.1 3.7 217 560-796 19-261 (319)
30 KOG4237 Extracellular matrix p 99.1 4.4E-11 9.5E-16 122.7 2.2 144 501-648 52-199 (498)
31 cd00116 LRR_RI Leucine-rich re 99.0 7E-11 1.5E-15 128.8 2.1 245 560-832 47-318 (319)
32 TIGR00635 ruvB Holliday juncti 99.0 2.8E-08 6E-13 107.3 21.0 273 158-471 4-289 (305)
33 PF05729 NACHT: NACHT domain 99.0 4.2E-09 9.1E-14 102.6 11.0 143 180-331 1-164 (166)
34 KOG4341 F-box protein containi 99.0 6.5E-11 1.4E-15 122.6 -1.9 294 539-862 138-443 (483)
35 PRK00080 ruvB Holliday junctio 98.9 2.1E-07 4.6E-12 101.0 24.6 273 158-471 25-310 (328)
36 COG2256 MGS1 ATPase related to 98.9 1.6E-07 3.4E-12 98.1 19.6 219 158-410 30-266 (436)
37 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 103.1 5.3 122 518-645 20-148 (175)
38 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.5E-14 103.0 5.2 138 527-683 7-147 (175)
39 KOG4341 F-box protein containi 98.9 1.6E-10 3.4E-15 119.9 -3.3 298 518-851 139-458 (483)
40 PRK06893 DNA replication initi 98.8 4.5E-08 9.7E-13 100.1 12.9 153 178-363 38-204 (229)
41 COG3899 Predicted ATPase [Gene 98.8 1.1E-07 2.3E-12 114.7 17.7 307 160-489 2-385 (849)
42 PTZ00112 origin recognition co 98.8 8.9E-07 1.9E-11 101.6 23.1 208 157-366 754-986 (1164)
43 KOG0532 Leucine-rich repeat (L 98.8 3.1E-10 6.7E-15 121.9 -4.9 168 519-713 77-245 (722)
44 PRK13342 recombination factor 98.7 3.9E-07 8.6E-12 102.0 17.4 176 158-364 12-198 (413)
45 KOG2028 ATPase related to the 98.7 1.2E-06 2.6E-11 89.6 18.8 135 170-330 153-294 (554)
46 KOG3207 Beta-tubulin folding c 98.6 8.3E-09 1.8E-13 107.9 0.7 109 536-648 118-233 (505)
47 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.9E-07 6.4E-12 94.6 12.0 169 163-364 22-203 (226)
48 KOG2120 SCF ubiquitin ligase, 98.6 3.5E-09 7.6E-14 105.0 -3.3 36 613-649 186-222 (419)
49 PRK05564 DNA polymerase III su 98.6 1.7E-06 3.7E-11 93.3 16.8 177 158-361 4-189 (313)
50 KOG2120 SCF ubiquitin ligase, 98.6 4.2E-09 9.2E-14 104.4 -3.2 185 637-856 185-374 (419)
51 KOG1259 Nischarin, modulator o 98.6 2E-08 4.3E-13 99.6 1.4 141 667-838 275-415 (490)
52 PRK07003 DNA polymerase III su 98.5 3.9E-06 8.5E-11 96.1 19.4 195 158-364 16-223 (830)
53 KOG0532 Leucine-rich repeat (L 98.5 4.9E-09 1.1E-13 112.8 -3.9 173 538-740 74-246 (722)
54 PRK04195 replication factor C 98.5 7.7E-06 1.7E-10 93.5 20.5 242 158-445 14-271 (482)
55 KOG3207 Beta-tubulin folding c 98.5 4.6E-08 1E-12 102.4 2.1 59 562-622 119-182 (505)
56 TIGR02903 spore_lon_C ATP-depe 98.5 3.8E-05 8.3E-10 89.8 26.0 202 158-365 154-398 (615)
57 PF13173 AAA_14: AAA domain 98.5 2.6E-07 5.7E-12 85.1 6.2 120 179-322 2-127 (128)
58 PRK08727 hypothetical protein; 98.4 2.8E-06 6E-11 87.1 13.9 167 160-359 22-201 (233)
59 COG4886 Leucine-rich repeat (L 98.4 2.2E-07 4.7E-12 104.5 6.2 87 560-650 112-199 (394)
60 COG1474 CDC6 Cdc6-related prot 98.4 2.1E-05 4.6E-10 85.4 21.0 201 158-362 17-238 (366)
61 PRK12402 replication factor C 98.4 4.3E-06 9.2E-11 91.8 15.8 194 158-361 15-225 (337)
62 cd01128 rho_factor Transcripti 98.4 4.2E-07 9.2E-12 93.0 6.7 98 171-272 7-114 (249)
63 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.3E-13 97.6 -1.1 127 516-649 283-411 (490)
64 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.6E-11 81.5 10.9 124 161-301 1-131 (151)
65 PRK14949 DNA polymerase III su 98.4 5E-06 1.1E-10 97.3 15.4 180 158-362 16-220 (944)
66 PRK14960 DNA polymerase III su 98.4 1.6E-05 3.4E-10 90.3 18.9 190 158-360 15-217 (702)
67 PTZ00202 tuzin; Provisional 98.4 7.2E-06 1.6E-10 87.5 14.9 166 154-330 258-434 (550)
68 PRK14961 DNA polymerase III su 98.4 1E-05 2.2E-10 88.9 16.8 189 158-359 16-217 (363)
69 COG4886 Leucine-rich repeat (L 98.3 3E-07 6.6E-12 103.3 4.2 121 522-648 98-220 (394)
70 PRK12323 DNA polymerase III su 98.3 7.8E-06 1.7E-10 92.5 14.8 196 158-362 16-225 (700)
71 PF13855 LRR_8: Leucine rich r 98.3 5.2E-07 1.1E-11 70.8 3.8 57 590-647 2-59 (61)
72 PRK00440 rfc replication facto 98.3 1.4E-05 2.9E-10 87.1 16.4 179 158-360 17-201 (319)
73 PRK14963 DNA polymerase III su 98.3 1.3E-05 2.8E-10 90.9 16.4 198 158-366 14-222 (504)
74 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.5E-11 81.5 6.7 117 178-299 3-125 (131)
75 PRK07940 DNA polymerase III su 98.3 1.6E-05 3.6E-10 87.1 16.4 172 158-362 5-213 (394)
76 PRK09087 hypothetical protein; 98.3 9E-06 1.9E-10 82.6 13.4 140 178-362 43-195 (226)
77 PLN03025 replication factor C 98.3 9.1E-06 2E-10 87.9 14.1 179 158-358 13-196 (319)
78 PF13855 LRR_8: Leucine rich r 98.3 8E-07 1.7E-11 69.7 4.1 57 540-599 2-59 (61)
79 PRK14962 DNA polymerase III su 98.3 1.9E-05 4.1E-10 88.9 16.5 185 158-366 14-223 (472)
80 KOG1909 Ran GTPase-activating 98.3 1.9E-07 4.1E-12 95.3 0.6 18 722-739 207-224 (382)
81 PF13191 AAA_16: AAA ATPase do 98.3 2.4E-06 5.2E-11 84.8 8.0 44 160-203 2-48 (185)
82 PRK14956 DNA polymerase III su 98.3 1.5E-05 3.3E-10 88.0 14.9 189 158-358 18-218 (484)
83 PRK07471 DNA polymerase III su 98.2 3.5E-05 7.5E-10 83.9 17.2 197 158-363 19-239 (365)
84 PRK13341 recombination factor 98.2 5.3E-05 1.2E-09 89.4 19.6 168 158-357 28-212 (725)
85 PRK06645 DNA polymerase III su 98.2 3.8E-05 8.2E-10 86.7 17.6 193 158-359 21-226 (507)
86 PRK14957 DNA polymerase III su 98.2 2.4E-05 5.2E-10 88.9 16.0 183 158-364 16-223 (546)
87 PRK08084 DNA replication initi 98.2 1.4E-05 3E-10 82.1 12.9 172 158-362 23-209 (235)
88 TIGR00678 holB DNA polymerase 98.2 3.8E-05 8.3E-10 76.2 15.6 159 169-358 3-187 (188)
89 PRK09376 rho transcription ter 98.2 4E-06 8.8E-11 89.2 8.3 99 169-271 158-266 (416)
90 PLN03150 hypothetical protein; 98.2 3.6E-06 7.8E-11 99.2 8.6 105 540-648 419-526 (623)
91 PRK07994 DNA polymerase III su 98.2 2.1E-05 4.5E-10 90.8 13.9 192 158-362 16-220 (647)
92 PF05496 RuvB_N: Holliday junc 98.1 3.5E-05 7.5E-10 75.7 13.2 173 158-364 24-223 (233)
93 PRK05642 DNA replication initi 98.1 2.7E-05 5.8E-10 79.9 12.9 152 179-363 45-209 (234)
94 TIGR02397 dnaX_nterm DNA polym 98.1 7.5E-05 1.6E-09 82.6 17.4 182 158-363 14-219 (355)
95 PRK05896 DNA polymerase III su 98.1 3.2E-05 6.9E-10 87.9 14.4 194 158-364 16-223 (605)
96 PRK09112 DNA polymerase III su 98.1 3.6E-05 7.7E-10 83.3 14.0 196 158-363 23-241 (351)
97 PRK14951 DNA polymerase III su 98.1 6.1E-05 1.3E-09 86.8 16.6 194 158-361 16-224 (618)
98 PF00308 Bac_DnaA: Bacterial d 98.1 2.8E-05 6E-10 78.7 12.3 160 179-360 34-206 (219)
99 KOG1909 Ran GTPase-activating 98.1 4.7E-07 1E-11 92.5 -0.7 190 588-797 91-310 (382)
100 PRK08691 DNA polymerase III su 98.1 3.6E-05 7.9E-10 88.3 14.2 190 158-361 16-219 (709)
101 PRK14958 DNA polymerase III su 98.1 4.7E-05 1E-09 86.7 15.0 179 158-360 16-218 (509)
102 PRK08903 DnaA regulatory inact 98.1 2.5E-05 5.4E-10 80.2 11.7 169 161-366 22-203 (227)
103 TIGR01242 26Sp45 26S proteasom 98.1 1.2E-05 2.6E-10 88.7 9.9 171 158-356 122-328 (364)
104 PRK14964 DNA polymerase III su 98.1 8.5E-05 1.9E-09 83.2 16.5 178 158-359 13-214 (491)
105 COG3903 Predicted ATPase [Gene 98.1 9.5E-06 2.1E-10 85.8 8.1 293 178-492 13-316 (414)
106 PRK14955 DNA polymerase III su 98.1 3.6E-05 7.7E-10 85.7 12.8 199 158-362 16-229 (397)
107 PRK14959 DNA polymerase III su 98.0 0.00018 3.8E-09 82.5 18.0 197 158-367 16-226 (624)
108 PRK14970 DNA polymerase III su 98.0 0.00014 3E-09 80.6 16.9 183 158-363 17-211 (367)
109 KOG2227 Pre-initiation complex 98.0 0.00033 7.1E-09 75.1 18.3 206 157-365 149-375 (529)
110 TIGR00767 rho transcription te 98.0 2.3E-05 5E-10 84.0 9.5 92 177-272 166-266 (415)
111 PLN03150 hypothetical protein; 98.0 1.3E-05 2.7E-10 94.6 8.3 84 565-650 419-503 (623)
112 PRK09111 DNA polymerase III su 98.0 0.00012 2.5E-09 84.7 15.7 195 158-362 24-233 (598)
113 PRK14087 dnaA chromosomal repl 98.0 3.9E-05 8.5E-10 86.2 11.2 167 179-363 141-320 (450)
114 PRK14969 DNA polymerase III su 98.0 0.00016 3.4E-09 83.1 16.0 181 158-362 16-221 (527)
115 PRK07764 DNA polymerase III su 97.9 0.00015 3.2E-09 86.8 16.1 189 158-359 15-218 (824)
116 PRK15386 type III secretion pr 97.9 3.5E-05 7.6E-10 83.1 9.6 63 561-630 49-112 (426)
117 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 57.6 4.1 39 590-629 2-40 (44)
118 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00013 2.7E-09 88.5 15.2 180 158-356 187-390 (852)
119 KOG3665 ZYG-1-like serine/thre 97.9 6E-06 1.3E-10 96.9 3.2 106 539-647 122-230 (699)
120 TIGR02881 spore_V_K stage V sp 97.9 0.0001 2.2E-09 77.3 12.1 155 159-333 7-194 (261)
121 TIGR02880 cbbX_cfxQ probable R 97.9 0.0002 4.4E-09 75.6 14.3 132 181-332 60-210 (284)
122 PRK14952 DNA polymerase III su 97.9 0.00026 5.7E-09 81.4 16.1 198 158-367 13-225 (584)
123 PRK03992 proteasome-activating 97.9 0.00027 5.8E-09 78.4 15.7 171 158-356 131-337 (389)
124 PRK07133 DNA polymerase III su 97.9 0.00025 5.4E-09 82.5 15.8 188 158-363 18-221 (725)
125 PRK14954 DNA polymerase III su 97.9 0.00026 5.7E-09 82.0 16.0 200 158-363 16-230 (620)
126 PRK14971 DNA polymerase III su 97.9 0.00032 7E-09 81.8 16.8 178 158-359 17-219 (614)
127 KOG0531 Protein phosphatase 1, 97.9 1.7E-06 3.6E-11 97.4 -2.0 104 536-647 92-196 (414)
128 PRK14950 DNA polymerase III su 97.9 0.00036 7.9E-09 81.6 17.2 193 158-362 16-221 (585)
129 CHL00181 cbbX CbbX; Provisiona 97.9 0.00024 5.2E-09 74.9 14.2 132 181-332 61-211 (287)
130 PRK06305 DNA polymerase III su 97.8 0.00049 1.1E-08 77.5 17.1 182 158-363 17-224 (451)
131 KOG0531 Protein phosphatase 1, 97.8 2.2E-06 4.8E-11 96.4 -1.7 31 764-795 234-265 (414)
132 PRK08451 DNA polymerase III su 97.8 0.00044 9.4E-09 78.4 16.4 193 158-362 14-218 (535)
133 PF05621 TniB: Bacterial TniB 97.8 0.0007 1.5E-08 69.9 16.4 198 159-360 35-259 (302)
134 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 56.9 3.3 40 564-605 1-40 (44)
135 TIGR00362 DnaA chromosomal rep 97.8 0.00029 6.3E-09 79.0 14.8 159 179-359 136-307 (405)
136 PRK14948 DNA polymerase III su 97.8 0.00047 1E-08 80.4 16.6 194 158-362 16-222 (620)
137 PRK11331 5-methylcytosine-spec 97.8 0.00017 3.6E-09 79.0 11.9 69 158-229 175-243 (459)
138 KOG1859 Leucine-rich repeat pr 97.8 8.9E-07 1.9E-11 98.2 -5.6 176 515-713 107-290 (1096)
139 PRK14953 DNA polymerase III su 97.8 0.00064 1.4E-08 77.1 16.8 177 158-362 16-220 (486)
140 COG2255 RuvB Holliday junction 97.8 0.0033 7.1E-08 63.3 19.5 166 158-363 26-224 (332)
141 PF14516 AAA_35: AAA-like doma 97.8 0.0025 5.4E-08 69.0 20.7 198 158-369 11-246 (331)
142 PRK14088 dnaA chromosomal repl 97.8 0.00019 4.2E-09 80.6 12.2 179 159-359 107-302 (440)
143 PRK06620 hypothetical protein; 97.8 0.00025 5.3E-09 71.5 11.6 133 180-359 45-186 (214)
144 PHA02544 44 clamp loader, smal 97.7 0.00027 5.9E-09 76.7 12.5 145 158-328 21-171 (316)
145 TIGR02639 ClpA ATP-dependent C 97.7 0.00017 3.6E-09 87.0 11.6 154 158-330 182-358 (731)
146 CHL00095 clpC Clp protease ATP 97.7 0.0002 4.2E-09 87.4 12.4 154 159-330 180-354 (821)
147 PTZ00361 26 proteosome regulat 97.7 0.00039 8.4E-09 77.2 13.3 170 158-355 183-388 (438)
148 PRK12422 chromosomal replicati 97.7 0.00068 1.5E-08 76.0 14.8 153 179-355 141-306 (445)
149 KOG2982 Uncharacterized conser 97.7 1.6E-05 3.4E-10 79.6 1.6 205 561-793 68-287 (418)
150 PTZ00454 26S protease regulato 97.7 0.00047 1E-08 76.0 13.1 171 158-356 145-351 (398)
151 PF05673 DUF815: Protein of un 97.7 0.0017 3.7E-08 64.9 15.6 118 158-303 27-154 (249)
152 PRK05707 DNA polymerase III su 97.7 0.0013 2.9E-08 70.6 16.1 95 260-362 105-203 (328)
153 KOG2543 Origin recognition com 97.7 0.00033 7.1E-09 73.1 10.9 164 157-330 5-193 (438)
154 PRK00149 dnaA chromosomal repl 97.7 0.0003 6.6E-09 79.9 11.9 159 179-359 148-319 (450)
155 PRK06647 DNA polymerase III su 97.7 0.0014 3E-08 75.6 17.3 191 158-361 16-219 (563)
156 COG0593 DnaA ATPase involved i 97.6 0.0015 3.2E-08 70.9 16.0 262 178-492 112-392 (408)
157 PRK07399 DNA polymerase III su 97.6 0.0054 1.2E-07 65.6 19.9 195 158-362 4-221 (314)
158 PRK14965 DNA polymerase III su 97.6 0.00096 2.1E-08 77.7 15.1 195 158-365 16-224 (576)
159 COG3267 ExeA Type II secretory 97.6 0.0036 7.8E-08 62.3 16.3 183 177-364 49-247 (269)
160 KOG0989 Replication factor C, 97.6 0.00079 1.7E-08 68.4 11.8 181 158-356 36-224 (346)
161 PRK14086 dnaA chromosomal repl 97.5 0.001 2.3E-08 75.9 14.0 157 179-357 314-483 (617)
162 KOG4579 Leucine-rich repeat (L 97.5 1.3E-05 2.9E-10 70.9 -0.9 93 535-631 49-141 (177)
163 PRK05563 DNA polymerase III su 97.5 0.0026 5.7E-08 73.7 17.1 190 158-360 16-218 (559)
164 KOG3665 ZYG-1-like serine/thre 97.5 5.1E-05 1.1E-09 89.1 2.9 129 517-649 122-262 (699)
165 PRK11034 clpA ATP-dependent Cl 97.5 0.00045 9.9E-09 82.1 10.6 155 159-330 187-362 (758)
166 PRK15386 type III secretion pr 97.5 0.00024 5.2E-09 76.8 7.4 82 517-610 52-136 (426)
167 TIGR03346 chaperone_ClpB ATP-d 97.5 0.001 2.2E-08 81.5 13.8 154 159-330 174-349 (852)
168 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.9E-08 72.8 13.3 136 163-326 22-163 (398)
169 KOG2982 Uncharacterized conser 97.4 3.5E-05 7.6E-10 77.2 0.4 208 565-838 46-266 (418)
170 PRK10865 protein disaggregatio 97.4 0.00082 1.8E-08 81.9 12.0 154 158-330 178-354 (857)
171 PF10443 RNA12: RNA12 protein; 97.4 0.012 2.7E-07 63.7 19.3 199 163-373 1-289 (431)
172 KOG1947 Leucine rich repeat pr 97.4 4.5E-05 9.7E-10 88.4 0.8 88 560-648 184-280 (482)
173 TIGR00763 lon ATP-dependent pr 97.4 0.0063 1.4E-07 73.9 19.1 46 158-203 320-371 (775)
174 KOG1859 Leucine-rich repeat pr 97.4 4.3E-06 9.4E-11 93.0 -7.3 129 515-650 162-292 (1096)
175 TIGR03689 pup_AAA proteasome A 97.4 0.0012 2.5E-08 74.5 11.6 158 158-332 182-380 (512)
176 TIGR01241 FtsH_fam ATP-depende 97.4 0.0018 3.8E-08 74.6 13.1 171 158-355 55-259 (495)
177 PRK08116 hypothetical protein; 97.3 0.00026 5.6E-09 74.0 5.7 102 180-299 115-220 (268)
178 KOG1644 U2-associated snRNP A' 97.3 0.00029 6.3E-09 67.0 4.9 98 520-620 45-148 (233)
179 PRK08118 topology modulation p 97.3 0.00014 3E-09 70.2 2.9 36 180-215 2-37 (167)
180 PRK08058 DNA polymerase III su 97.3 0.0057 1.2E-07 66.2 15.5 146 159-329 6-181 (329)
181 COG1222 RPT1 ATP-dependent 26S 97.3 0.0043 9.4E-08 64.6 13.5 196 159-382 152-392 (406)
182 PRK12608 transcription termina 97.3 0.0014 3E-08 70.2 10.3 101 167-271 120-230 (380)
183 PRK07261 topology modulation p 97.2 0.00083 1.8E-08 65.2 7.5 66 181-271 2-67 (171)
184 PRK10787 DNA-binding ATP-depen 97.2 0.0044 9.6E-08 74.5 15.1 159 157-330 321-506 (784)
185 PRK08769 DNA polymerase III su 97.2 0.011 2.3E-07 63.1 16.4 173 164-363 10-209 (319)
186 PRK06871 DNA polymerase III su 97.2 0.012 2.6E-07 62.9 16.7 177 165-359 9-200 (325)
187 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0045 9.7E-08 68.6 13.6 92 158-272 190-293 (802)
188 TIGR00602 rad24 checkpoint pro 97.2 0.0012 2.6E-08 76.5 9.9 46 158-203 84-134 (637)
189 PRK10536 hypothetical protein; 97.2 0.00048 1E-08 69.7 5.8 55 159-216 56-110 (262)
190 CHL00176 ftsH cell division pr 97.2 0.0061 1.3E-07 71.4 15.0 171 158-355 183-387 (638)
191 KOG0741 AAA+-type ATPase [Post 97.2 0.0056 1.2E-07 66.6 13.3 145 178-352 537-704 (744)
192 smart00382 AAA ATPases associa 97.2 0.0015 3.3E-08 61.0 8.5 88 180-274 3-91 (148)
193 COG0466 Lon ATP-dependent Lon 97.1 0.0072 1.6E-07 68.7 13.8 158 158-330 323-508 (782)
194 PF13177 DNA_pol3_delta2: DNA 97.1 0.0043 9.3E-08 59.5 10.6 136 162-318 1-162 (162)
195 PF04665 Pox_A32: Poxvirus A32 97.1 0.0013 2.9E-08 66.3 7.2 36 180-218 14-49 (241)
196 PRK06090 DNA polymerase III su 97.1 0.02 4.4E-07 61.0 16.5 164 165-362 10-201 (319)
197 KOG1947 Leucine rich repeat pr 97.1 7.8E-05 1.7E-09 86.4 -2.0 137 587-737 186-330 (482)
198 KOG1644 U2-associated snRNP A' 97.0 0.00078 1.7E-08 64.2 4.7 101 540-646 43-149 (233)
199 PRK12377 putative replication 97.0 0.0017 3.7E-08 66.6 7.5 74 178-271 100-173 (248)
200 PRK07993 DNA polymerase III su 97.0 0.021 4.5E-07 61.7 15.7 166 165-361 9-203 (334)
201 PF00004 AAA: ATPase family as 96.9 0.0016 3.5E-08 60.2 6.0 22 182-203 1-22 (132)
202 COG0542 clpA ATP-binding subun 96.9 0.032 7E-07 65.4 16.8 105 158-273 491-605 (786)
203 KOG1514 Origin recognition com 96.8 0.054 1.2E-06 61.6 17.7 202 158-365 396-624 (767)
204 PRK06964 DNA polymerase III su 96.8 0.047 1E-06 58.8 16.7 91 260-362 131-225 (342)
205 TIGR01243 CDC48 AAA family ATP 96.8 0.01 2.2E-07 72.0 13.0 173 158-357 178-382 (733)
206 KOG0991 Replication factor C, 96.8 0.0047 1E-07 60.1 7.9 46 158-203 27-72 (333)
207 KOG4579 Leucine-rich repeat (L 96.8 0.00022 4.8E-09 63.3 -1.1 89 518-610 54-144 (177)
208 TIGR02640 gas_vesic_GvpN gas v 96.8 0.026 5.7E-07 59.0 14.0 56 165-228 9-64 (262)
209 PRK08181 transposase; Validate 96.7 0.0021 4.6E-08 66.7 5.4 78 172-272 101-178 (269)
210 PHA00729 NTP-binding motif con 96.7 0.0067 1.4E-07 60.6 8.6 35 169-203 7-41 (226)
211 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0023 5E-08 68.3 5.4 46 158-203 51-102 (361)
212 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.4E-08 59.3 3.5 23 181-203 1-23 (121)
213 KOG2228 Origin recognition com 96.6 0.021 4.5E-07 59.1 11.5 172 158-332 24-221 (408)
214 PF00448 SRP54: SRP54-type pro 96.6 0.0066 1.4E-07 60.1 7.9 89 179-270 1-92 (196)
215 KOG2004 Mitochondrial ATP-depe 96.6 0.024 5.1E-07 64.3 12.6 158 158-330 411-596 (906)
216 COG2812 DnaX DNA polymerase II 96.6 0.015 3.2E-07 65.4 11.1 186 158-356 16-214 (515)
217 PRK06526 transposase; Provisio 96.6 0.0022 4.8E-08 66.3 4.4 26 178-203 97-122 (254)
218 PRK06921 hypothetical protein; 96.5 0.0043 9.2E-08 64.8 6.3 39 178-218 116-154 (266)
219 PRK09361 radB DNA repair and r 96.5 0.0092 2E-07 61.1 8.8 46 178-227 22-67 (225)
220 PRK09183 transposase/IS protei 96.5 0.0038 8.3E-08 64.9 5.9 25 179-203 102-126 (259)
221 PRK04296 thymidine kinase; Pro 96.5 0.0029 6.3E-08 62.6 4.8 114 180-302 3-118 (190)
222 TIGR02237 recomb_radB DNA repa 96.5 0.0071 1.5E-07 61.1 7.7 48 178-229 11-58 (209)
223 KOG0730 AAA+-type ATPase [Post 96.5 0.065 1.4E-06 60.6 15.5 164 159-345 435-630 (693)
224 CHL00195 ycf46 Ycf46; Provisio 96.5 0.023 5.1E-07 64.3 12.2 172 158-356 228-429 (489)
225 KOG2123 Uncharacterized conser 96.5 0.00028 6E-09 70.3 -2.7 61 587-649 39-100 (388)
226 PRK12727 flagellar biosynthesi 96.5 0.098 2.1E-06 58.9 16.7 89 178-271 349-438 (559)
227 cd01393 recA_like RecA is a b 96.5 0.023 4.9E-07 58.2 11.2 92 178-271 18-124 (226)
228 TIGR01243 CDC48 AAA family ATP 96.4 0.03 6.5E-07 67.9 13.7 171 158-356 453-657 (733)
229 PRK06835 DNA replication prote 96.4 0.0052 1.1E-07 65.9 6.3 37 179-218 183-219 (329)
230 TIGR02639 ClpA ATP-dependent C 96.4 0.0088 1.9E-07 72.3 8.5 46 158-203 454-508 (731)
231 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0072 1.6E-07 73.6 7.8 46 158-203 566-620 (852)
232 PRK10865 protein disaggregatio 96.4 0.026 5.7E-07 69.0 12.6 46 158-203 568-622 (857)
233 COG1223 Predicted ATPase (AAA+ 96.3 0.05 1.1E-06 54.1 11.7 170 158-355 121-318 (368)
234 PF07693 KAP_NTPase: KAP famil 96.3 0.11 2.3E-06 56.6 16.1 40 164-203 2-44 (325)
235 TIGR03346 chaperone_ClpB ATP-d 96.3 0.015 3.3E-07 71.4 10.3 46 158-203 565-619 (852)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.017 3.6E-07 59.6 9.2 92 178-271 18-125 (235)
237 PF08423 Rad51: Rad51; InterP 96.3 0.018 4E-07 59.7 9.1 57 178-236 37-97 (256)
238 PRK08699 DNA polymerase III su 96.3 0.075 1.6E-06 57.1 14.1 69 260-329 112-184 (325)
239 cd01394 radB RadB. The archaea 96.2 0.029 6.4E-07 57.0 10.4 43 178-223 18-60 (218)
240 PRK06696 uridine kinase; Valid 96.2 0.0067 1.5E-07 61.9 5.6 42 162-203 2-46 (223)
241 COG0542 clpA ATP-binding subun 96.2 0.039 8.5E-07 64.7 12.1 154 159-330 171-346 (786)
242 PRK07952 DNA replication prote 96.2 0.032 7E-07 57.1 10.1 88 166-272 84-173 (244)
243 PRK05541 adenylylsulfate kinas 96.2 0.01 2.3E-07 58.0 6.4 36 178-216 6-41 (176)
244 COG1484 DnaC DNA replication p 96.2 0.02 4.4E-07 59.2 8.7 75 178-272 104-178 (254)
245 PRK06762 hypothetical protein; 96.2 0.074 1.6E-06 51.4 12.2 25 179-203 2-26 (166)
246 TIGR02012 tigrfam_recA protein 96.1 0.014 3.1E-07 61.9 7.6 86 178-271 54-143 (321)
247 PRK04132 replication factor C 96.1 0.072 1.6E-06 63.9 14.2 153 187-362 574-731 (846)
248 KOG2123 Uncharacterized conser 96.1 0.00069 1.5E-08 67.5 -2.3 102 538-645 18-125 (388)
249 COG0470 HolB ATPase involved i 96.1 0.037 8E-07 60.3 10.8 139 160-317 3-168 (325)
250 cd00983 recA RecA is a bacter 96.1 0.016 3.5E-07 61.6 7.5 86 178-271 54-143 (325)
251 cd01120 RecA-like_NTPases RecA 96.0 0.036 7.7E-07 53.2 9.4 40 181-223 1-40 (165)
252 cd01133 F1-ATPase_beta F1 ATP 96.0 0.021 4.5E-07 59.0 7.9 91 178-271 68-173 (274)
253 COG5238 RNA1 Ran GTPase-activa 96.0 0.0045 9.8E-08 61.7 2.8 87 563-650 29-133 (388)
254 PRK15455 PrkA family serine pr 96.0 0.0078 1.7E-07 67.6 5.0 45 159-203 77-127 (644)
255 KOG2739 Leucine-rich acidic nu 96.0 0.0024 5.1E-08 63.8 0.8 59 561-622 40-101 (260)
256 KOG2739 Leucine-rich acidic nu 96.0 0.0032 7E-08 62.9 1.6 109 536-648 40-154 (260)
257 PRK09354 recA recombinase A; P 96.0 0.02 4.2E-07 61.4 7.7 86 178-271 59-148 (349)
258 COG0572 Udk Uridine kinase [Nu 96.0 0.022 4.8E-07 56.2 7.4 79 178-262 7-85 (218)
259 CHL00095 clpC Clp protease ATP 96.0 0.041 8.8E-07 67.5 11.5 46 158-203 509-563 (821)
260 cd03238 ABC_UvrA The excision 95.9 0.021 4.7E-07 55.4 7.2 125 178-314 20-161 (176)
261 PRK04301 radA DNA repair and r 95.9 0.052 1.1E-06 58.7 10.9 57 178-236 101-161 (317)
262 cd03115 SRP The signal recogni 95.9 0.025 5.4E-07 55.2 7.8 23 181-203 2-24 (173)
263 KOG1969 DNA replication checkp 95.9 0.018 3.8E-07 65.5 7.3 72 178-272 325-398 (877)
264 TIGR02238 recomb_DMC1 meiotic 95.9 0.044 9.6E-07 58.5 10.0 59 178-238 95-157 (313)
265 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.045 9.8E-07 56.4 9.8 49 178-231 20-68 (237)
266 COG5238 RNA1 Ran GTPase-activa 95.9 0.0063 1.4E-07 60.7 3.2 167 560-738 54-252 (388)
267 PRK11034 clpA ATP-dependent Cl 95.9 0.02 4.3E-07 68.4 8.0 45 159-203 459-512 (758)
268 KOG0728 26S proteasome regulat 95.8 0.2 4.4E-06 49.5 13.2 182 160-365 148-366 (404)
269 KOG0734 AAA+-type ATPase conta 95.8 0.019 4.2E-07 62.7 6.9 45 159-203 305-361 (752)
270 PRK08939 primosomal protein Dn 95.8 0.044 9.6E-07 58.4 9.7 115 162-298 135-259 (306)
271 TIGR00959 ffh signal recogniti 95.8 0.036 7.9E-07 61.6 9.2 90 178-270 98-191 (428)
272 COG2884 FtsE Predicted ATPase 95.8 0.031 6.7E-07 53.2 7.3 124 178-306 27-203 (223)
273 PRK06547 hypothetical protein; 95.8 0.013 2.9E-07 56.6 5.2 34 170-203 6-39 (172)
274 COG1102 Cmk Cytidylate kinase 95.8 0.018 3.9E-07 53.1 5.4 44 181-238 2-45 (179)
275 PRK00771 signal recognition pa 95.7 0.058 1.2E-06 60.2 10.5 89 178-270 94-184 (437)
276 PF00485 PRK: Phosphoribulokin 95.7 0.067 1.4E-06 53.2 10.1 82 181-265 1-87 (194)
277 PRK10867 signal recognition pa 95.7 0.041 8.8E-07 61.2 9.2 26 178-203 99-124 (433)
278 COG1618 Predicted nucleotide k 95.7 0.012 2.6E-07 54.3 4.0 33 179-213 5-37 (179)
279 cd01131 PilT Pilus retraction 95.7 0.014 2.9E-07 58.3 4.9 107 180-302 2-111 (198)
280 PLN03187 meiotic recombination 95.7 0.069 1.5E-06 57.5 10.4 60 178-238 125-187 (344)
281 KOG0735 AAA+-type ATPase [Post 95.7 0.025 5.5E-07 64.0 7.2 71 178-271 430-504 (952)
282 KOG0731 AAA+-type ATPase conta 95.6 0.21 4.6E-06 58.3 14.7 175 158-359 311-521 (774)
283 PF14532 Sigma54_activ_2: Sigm 95.6 0.012 2.6E-07 54.9 3.9 43 161-203 1-45 (138)
284 TIGR03499 FlhF flagellar biosy 95.6 0.052 1.1E-06 57.4 9.0 87 178-269 193-280 (282)
285 COG2607 Predicted ATPase (AAA+ 95.6 0.089 1.9E-06 52.0 9.7 97 158-284 60-165 (287)
286 PRK14722 flhF flagellar biosyn 95.6 0.048 1E-06 59.3 8.8 89 178-271 136-225 (374)
287 TIGR02236 recomb_radA DNA repa 95.5 0.053 1.1E-06 58.5 9.2 58 178-237 94-155 (310)
288 PRK10463 hydrogenase nickel in 95.5 0.042 9.2E-07 57.2 7.9 35 169-203 94-128 (290)
289 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.3E-07 54.3 3.2 22 182-203 1-22 (129)
290 PRK10733 hflB ATP-dependent me 95.5 0.13 2.7E-06 61.2 12.9 170 159-355 153-356 (644)
291 cd01121 Sms Sms (bacterial rad 95.5 0.044 9.5E-07 60.0 8.4 84 178-270 81-167 (372)
292 PLN03186 DNA repair protein RA 95.5 0.092 2E-06 56.6 10.7 59 178-238 122-184 (342)
293 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.033 7.1E-07 52.6 6.4 116 180-300 3-138 (159)
294 PRK06067 flagellar accessory p 95.5 0.083 1.8E-06 54.3 10.2 88 178-271 24-130 (234)
295 COG1136 SalX ABC-type antimicr 95.5 0.064 1.4E-06 53.6 8.7 131 178-314 30-215 (226)
296 PRK09270 nucleoside triphospha 95.5 0.084 1.8E-06 54.0 10.0 27 177-203 31-57 (229)
297 TIGR02239 recomb_RAD51 DNA rep 95.5 0.069 1.5E-06 57.2 9.6 59 178-237 95-156 (316)
298 PRK07667 uridine kinase; Provi 95.5 0.02 4.3E-07 56.9 5.1 37 167-203 3-41 (193)
299 cd03247 ABCC_cytochrome_bd The 95.4 0.056 1.2E-06 52.9 8.2 127 178-314 27-169 (178)
300 COG4608 AppF ABC-type oligopep 95.4 0.065 1.4E-06 54.5 8.6 126 178-307 38-177 (268)
301 cd02019 NK Nucleoside/nucleoti 95.4 0.013 2.7E-07 47.1 2.9 23 181-203 1-23 (69)
302 PF00006 ATP-synt_ab: ATP synt 95.4 0.063 1.4E-06 53.8 8.4 95 170-270 5-114 (215)
303 PF01695 IstB_IS21: IstB-like 95.4 0.026 5.7E-07 55.0 5.6 74 178-272 46-119 (178)
304 TIGR00554 panK_bact pantothena 95.4 0.11 2.3E-06 54.7 10.3 27 177-203 60-86 (290)
305 PTZ00035 Rad51 protein; Provis 95.4 0.15 3.3E-06 55.2 11.8 58 178-237 117-178 (337)
306 PLN00020 ribulose bisphosphate 95.3 0.036 7.9E-07 58.9 6.7 26 178-203 147-172 (413)
307 PRK14974 cell division protein 95.3 0.12 2.6E-06 55.6 10.8 90 178-271 139-232 (336)
308 PRK08233 hypothetical protein; 95.3 0.015 3.1E-07 57.3 3.7 25 179-203 3-27 (182)
309 cd03214 ABC_Iron-Siderophores_ 95.3 0.047 1E-06 53.6 7.2 121 178-303 24-161 (180)
310 TIGR00390 hslU ATP-dependent p 95.3 0.038 8.2E-07 60.2 6.9 46 158-203 12-71 (441)
311 cd03223 ABCD_peroxisomal_ALDP 95.3 0.066 1.4E-06 51.7 8.1 116 178-303 26-151 (166)
312 PRK04328 hypothetical protein; 95.3 0.066 1.4E-06 55.5 8.5 53 178-236 22-74 (249)
313 cd03246 ABCC_Protease_Secretio 95.3 0.042 9.2E-07 53.5 6.6 26 178-203 27-52 (173)
314 cd03222 ABC_RNaseL_inhibitor T 95.3 0.041 9E-07 53.5 6.4 26 178-203 24-49 (177)
315 KOG0733 Nuclear AAA ATPase (VC 95.3 0.25 5.4E-06 55.4 12.9 154 178-356 544-718 (802)
316 PF13671 AAA_33: AAA domain; P 95.2 0.016 3.5E-07 54.4 3.5 23 181-203 1-23 (143)
317 PF00560 LRR_1: Leucine Rich R 95.2 0.0091 2E-07 35.5 1.1 17 591-607 2-18 (22)
318 cd02025 PanK Pantothenate kina 95.2 0.093 2E-06 53.2 9.0 23 181-203 1-23 (220)
319 PRK13531 regulatory ATPase Rav 95.2 0.029 6.3E-07 62.4 5.6 44 158-203 20-63 (498)
320 PTZ00301 uridine kinase; Provi 95.2 0.018 3.9E-07 57.6 3.7 25 179-203 3-27 (210)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.059 1.3E-06 50.6 7.0 103 178-303 25-130 (144)
322 KOG2035 Replication factor C, 95.1 0.84 1.8E-05 46.3 15.0 208 160-385 15-261 (351)
323 COG0468 RecA RecA/RadA recombi 95.1 0.085 1.8E-06 54.8 8.6 88 178-270 59-150 (279)
324 PF06309 Torsin: Torsin; Inte 95.1 0.038 8.1E-07 49.4 5.1 46 158-203 25-77 (127)
325 cd03228 ABCC_MRP_Like The MRP 95.1 0.057 1.2E-06 52.4 7.1 126 178-314 27-167 (171)
326 PRK11889 flhF flagellar biosyn 95.1 0.097 2.1E-06 56.6 9.0 88 178-271 240-330 (436)
327 cd03216 ABC_Carb_Monos_I This 95.1 0.028 6.1E-07 54.1 4.7 115 178-302 25-144 (163)
328 KOG0652 26S proteasome regulat 95.1 0.19 4E-06 50.0 10.1 186 158-368 171-393 (424)
329 KOG0744 AAA+-type ATPase [Post 95.0 0.074 1.6E-06 54.7 7.5 81 179-272 177-261 (423)
330 COG1428 Deoxynucleoside kinase 95.0 0.019 4.2E-07 55.8 3.3 25 179-203 4-28 (216)
331 PRK05480 uridine/cytidine kina 95.0 0.022 4.7E-07 57.6 3.9 27 177-203 4-30 (209)
332 TIGR01650 PD_CobS cobaltochela 95.0 1.7 3.7E-05 46.3 17.9 39 163-203 50-88 (327)
333 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.16 3.4E-06 52.1 10.3 41 178-221 19-59 (229)
334 TIGR00064 ftsY signal recognit 95.0 0.13 2.8E-06 53.9 9.6 90 178-271 71-164 (272)
335 TIGR02858 spore_III_AA stage I 94.9 0.16 3.6E-06 52.8 10.1 127 167-302 98-231 (270)
336 cd01135 V_A-ATPase_B V/A-type 94.9 0.091 2E-06 54.2 8.0 93 178-271 68-176 (276)
337 KOG3864 Uncharacterized conser 94.9 0.0044 9.5E-08 59.3 -1.4 67 723-797 120-188 (221)
338 KOG3347 Predicted nucleotide k 94.9 0.039 8.4E-07 50.1 4.6 72 179-263 7-78 (176)
339 COG1066 Sms Predicted ATP-depe 94.9 0.1 2.2E-06 55.9 8.4 84 178-271 92-178 (456)
340 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.8E-07 56.3 3.5 26 178-203 2-27 (188)
341 PTZ00088 adenylate kinase 1; P 94.9 0.023 5E-07 57.7 3.6 23 181-203 8-30 (229)
342 PRK12724 flagellar biosynthesi 94.9 0.094 2E-06 57.4 8.4 25 179-203 223-247 (432)
343 PRK03839 putative kinase; Prov 94.8 0.022 4.8E-07 55.9 3.3 23 181-203 2-24 (180)
344 KOG0739 AAA+-type ATPase [Post 94.8 0.44 9.6E-06 48.6 12.2 170 158-355 133-334 (439)
345 cd03230 ABC_DR_subfamily_A Thi 94.8 0.038 8.2E-07 53.8 4.9 120 178-304 25-159 (173)
346 TIGR00235 udk uridine kinase. 94.8 0.025 5.3E-07 57.0 3.7 26 178-203 5-30 (207)
347 COG0194 Gmk Guanylate kinase [ 94.8 0.079 1.7E-06 50.6 6.7 25 179-203 4-28 (191)
348 PF13481 AAA_25: AAA domain; P 94.8 0.1 2.2E-06 51.8 8.1 42 179-221 32-81 (193)
349 COG0464 SpoVK ATPases of the A 94.8 0.39 8.3E-06 55.6 13.9 152 159-333 243-426 (494)
350 PRK05201 hslU ATP-dependent pr 94.8 0.07 1.5E-06 58.2 7.1 46 158-203 15-74 (443)
351 PRK00889 adenylylsulfate kinas 94.7 0.082 1.8E-06 51.6 7.1 26 178-203 3-28 (175)
352 cd02027 APSK Adenosine 5'-phos 94.7 0.078 1.7E-06 50.1 6.6 23 181-203 1-23 (149)
353 PRK05439 pantothenate kinase; 94.7 0.23 4.9E-06 52.7 10.7 83 177-262 84-166 (311)
354 KOG0738 AAA+-type ATPase [Post 94.7 0.31 6.7E-06 51.7 11.2 45 159-203 213-269 (491)
355 COG0563 Adk Adenylate kinase a 94.7 0.049 1.1E-06 52.9 5.2 23 181-203 2-24 (178)
356 PRK12678 transcription termina 94.7 0.04 8.8E-07 61.8 5.1 98 169-271 405-513 (672)
357 PF10236 DAP3: Mitochondrial r 94.7 0.88 1.9E-05 48.7 15.2 49 311-359 258-306 (309)
358 PF07726 AAA_3: ATPase family 94.7 0.033 7.1E-07 49.9 3.6 28 182-212 2-29 (131)
359 PRK12723 flagellar biosynthesi 94.7 0.15 3.3E-06 55.9 9.5 89 178-271 173-264 (388)
360 TIGR01425 SRP54_euk signal rec 94.7 0.12 2.6E-06 57.2 8.7 26 178-203 99-124 (429)
361 PF07728 AAA_5: AAA domain (dy 94.7 0.074 1.6E-06 49.6 6.3 42 182-229 2-43 (139)
362 PRK08149 ATP synthase SpaL; Va 94.7 0.13 2.8E-06 56.9 8.9 89 178-271 150-251 (428)
363 PRK08972 fliI flagellum-specif 94.6 0.065 1.4E-06 59.1 6.5 89 178-271 161-262 (444)
364 KOG1532 GTPase XAB1, interacts 94.6 0.034 7.5E-07 55.6 3.9 62 178-240 18-88 (366)
365 PRK00625 shikimate kinase; Pro 94.6 0.027 5.8E-07 54.5 3.2 23 181-203 2-24 (173)
366 PRK06217 hypothetical protein; 94.6 0.054 1.2E-06 53.3 5.4 23 181-203 3-25 (183)
367 cd01124 KaiC KaiC is a circadi 94.6 0.1 2.2E-06 51.6 7.4 44 182-230 2-45 (187)
368 PRK07132 DNA polymerase III su 94.6 1.2 2.7E-05 47.1 15.8 167 167-361 5-184 (299)
369 PF02562 PhoH: PhoH-like prote 94.6 0.036 7.8E-07 54.8 4.0 129 162-300 4-156 (205)
370 TIGR00150 HI0065_YjeE ATPase, 94.6 0.064 1.4E-06 49.0 5.3 26 178-203 21-46 (133)
371 KOG0743 AAA+-type ATPase [Post 94.6 1.4 2.9E-05 48.3 15.9 149 181-368 237-415 (457)
372 TIGR03575 selen_PSTK_euk L-ser 94.5 0.11 2.3E-06 55.9 7.8 22 182-203 2-23 (340)
373 PRK08533 flagellar accessory p 94.5 0.17 3.7E-06 51.7 9.1 49 178-231 23-71 (230)
374 PRK06002 fliI flagellum-specif 94.5 0.11 2.4E-06 57.6 8.0 90 178-271 164-264 (450)
375 PRK05973 replicative DNA helic 94.5 0.2 4.3E-06 50.9 9.3 50 178-232 63-112 (237)
376 PRK04040 adenylate kinase; Pro 94.5 0.032 7E-07 54.9 3.5 24 180-203 3-26 (188)
377 PF00910 RNA_helicase: RNA hel 94.5 0.026 5.6E-07 49.9 2.5 22 182-203 1-22 (107)
378 PRK13543 cytochrome c biogenes 94.5 0.13 2.9E-06 52.0 8.0 26 178-203 36-61 (214)
379 PRK09280 F0F1 ATP synthase sub 94.4 0.2 4.3E-06 55.9 9.7 92 178-271 143-248 (463)
380 PRK08927 fliI flagellum-specif 94.4 0.13 2.7E-06 57.1 8.2 89 178-271 157-258 (442)
381 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.027 5.9E-07 55.4 2.9 23 181-203 1-23 (183)
382 PF03205 MobB: Molybdopterin g 94.4 0.048 1E-06 50.7 4.2 39 180-220 1-39 (140)
383 cd02028 UMPK_like Uridine mono 94.4 0.085 1.8E-06 51.6 6.2 23 181-203 1-23 (179)
384 PRK13765 ATP-dependent proteas 94.4 0.081 1.8E-06 61.9 7.0 74 158-236 31-104 (637)
385 PRK11823 DNA repair protein Ra 94.4 0.11 2.5E-06 58.5 8.0 84 178-270 79-165 (446)
386 KOG2170 ATPase of the AAA+ sup 94.4 0.092 2E-06 53.7 6.3 101 158-273 82-190 (344)
387 COG4088 Predicted nucleotide k 94.3 0.023 5E-07 54.5 1.9 24 180-203 2-25 (261)
388 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.3E-07 34.1 0.9 22 565-588 1-22 (22)
389 cd00267 ABC_ATPase ABC (ATP-bi 94.3 0.052 1.1E-06 51.9 4.5 116 178-304 24-144 (157)
390 PRK12597 F0F1 ATP synthase sub 94.3 0.21 4.6E-06 55.8 9.7 93 177-271 141-247 (461)
391 PRK05703 flhF flagellar biosyn 94.3 0.12 2.7E-06 57.7 8.0 87 179-270 221-308 (424)
392 cd01129 PulE-GspE PulE/GspE Th 94.3 0.1 2.2E-06 54.5 6.8 104 161-277 62-165 (264)
393 cd02024 NRK1 Nicotinamide ribo 94.3 0.031 6.8E-07 54.6 2.8 23 181-203 1-23 (187)
394 TIGR00382 clpX endopeptidase C 94.3 0.14 3E-06 56.6 8.0 47 157-203 76-140 (413)
395 PF01583 APS_kinase: Adenylyls 94.2 0.045 9.8E-07 51.4 3.7 25 179-203 2-26 (156)
396 PF13306 LRR_5: Leucine rich r 94.2 0.14 3E-06 46.9 7.0 101 536-645 9-111 (129)
397 cd02023 UMPK Uridine monophosp 94.2 0.032 6.9E-07 55.8 2.8 23 181-203 1-23 (198)
398 PRK14721 flhF flagellar biosyn 94.2 0.27 5.8E-06 54.5 10.1 61 178-239 190-251 (420)
399 PF03308 ArgK: ArgK protein; 94.2 0.09 1.9E-06 53.2 5.8 62 166-228 14-77 (266)
400 TIGR00708 cobA cob(I)alamin ad 94.2 0.19 4.2E-06 48.0 7.8 117 179-300 5-140 (173)
401 TIGR02655 circ_KaiC circadian 94.2 0.23 5E-06 56.9 10.1 96 169-270 251-362 (484)
402 COG3640 CooC CO dehydrogenase 94.2 0.082 1.8E-06 52.2 5.3 43 181-225 2-44 (255)
403 TIGR00764 lon_rel lon-related 94.2 0.15 3.3E-06 59.8 8.6 74 158-236 18-91 (608)
404 PF13245 AAA_19: Part of AAA d 94.2 0.1 2.2E-06 42.6 5.2 26 178-203 9-34 (76)
405 COG4618 ArpD ABC-type protease 94.1 0.24 5.1E-06 54.6 9.1 26 178-203 361-386 (580)
406 PF08433 KTI12: Chromatin asso 94.1 0.063 1.4E-06 56.0 4.7 24 180-203 2-25 (270)
407 PRK00131 aroK shikimate kinase 94.1 0.047 1E-06 53.2 3.6 25 179-203 4-28 (175)
408 PF12775 AAA_7: P-loop contain 94.0 0.064 1.4E-06 56.2 4.8 57 167-227 22-78 (272)
409 TIGR00073 hypB hydrogenase acc 94.0 0.059 1.3E-06 54.2 4.4 32 172-203 15-46 (207)
410 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.13 2.7E-06 51.5 6.6 25 178-202 25-49 (200)
411 PRK12726 flagellar biosynthesi 94.0 0.28 6.2E-06 52.9 9.4 89 178-271 205-295 (407)
412 COG0467 RAD55 RecA-superfamily 94.0 0.11 2.4E-06 54.4 6.4 53 178-236 22-74 (260)
413 COG1703 ArgK Putative periplas 93.9 0.095 2.1E-06 53.8 5.5 62 168-230 38-101 (323)
414 cd03281 ABC_MSH5_euk MutS5 hom 93.9 0.052 1.1E-06 54.7 3.7 24 179-202 29-52 (213)
415 PRK09519 recA DNA recombinatio 93.9 0.18 4E-06 59.8 8.7 86 178-271 59-148 (790)
416 TIGR02030 BchI-ChlI magnesium 93.9 0.083 1.8E-06 56.9 5.4 46 158-203 4-49 (337)
417 COG0541 Ffh Signal recognition 93.9 1.8 3.9E-05 47.2 15.2 57 178-238 99-157 (451)
418 PF06745 KaiC: KaiC; InterPro 93.9 0.051 1.1E-06 55.6 3.7 88 178-271 18-125 (226)
419 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.29 6.2E-06 49.2 9.1 26 178-203 33-58 (207)
420 PRK10751 molybdopterin-guanine 93.9 0.055 1.2E-06 51.9 3.6 26 178-203 5-30 (173)
421 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.089 1.9E-06 55.8 5.4 46 158-203 61-112 (358)
422 TIGR03498 FliI_clade3 flagella 93.9 0.25 5.5E-06 54.7 9.1 89 178-271 139-240 (418)
423 COG0465 HflB ATP-dependent Zn 93.8 0.45 9.7E-06 54.6 11.2 173 158-357 150-356 (596)
424 cd02020 CMPK Cytidine monophos 93.8 0.043 9.4E-07 51.7 2.8 23 181-203 1-23 (147)
425 COG1131 CcmA ABC-type multidru 93.8 0.4 8.7E-06 51.0 10.4 26 178-203 30-55 (293)
426 TIGR02322 phosphon_PhnN phosph 93.8 0.05 1.1E-06 53.4 3.3 24 180-203 2-25 (179)
427 PRK13949 shikimate kinase; Pro 93.8 0.049 1.1E-06 52.7 3.2 23 181-203 3-25 (169)
428 PRK06995 flhF flagellar biosyn 93.8 0.23 5E-06 55.9 8.9 58 179-238 256-315 (484)
429 cd00227 CPT Chloramphenicol (C 93.8 0.051 1.1E-06 53.0 3.4 24 180-203 3-26 (175)
430 PTZ00185 ATPase alpha subunit; 93.8 0.29 6.4E-06 54.6 9.4 94 178-272 188-300 (574)
431 PRK06936 type III secretion sy 93.8 0.32 6.9E-06 53.9 9.7 89 178-271 161-262 (439)
432 PF00154 RecA: recA bacterial 93.8 0.18 3.8E-06 53.6 7.5 86 179-272 53-142 (322)
433 TIGR00416 sms DNA repair prote 93.8 0.22 4.9E-06 56.2 8.9 40 178-220 93-132 (454)
434 cd00544 CobU Adenosylcobinamid 93.8 0.3 6.4E-06 47.1 8.5 79 182-270 2-82 (169)
435 CHL00081 chlI Mg-protoporyphyr 93.8 0.077 1.7E-06 57.2 4.8 46 158-203 17-62 (350)
436 cd02021 GntK Gluconate kinase 93.8 0.045 9.8E-07 51.8 2.8 23 181-203 1-23 (150)
437 COG1936 Predicted nucleotide k 93.8 0.047 1E-06 51.2 2.8 20 181-200 2-21 (180)
438 PRK15453 phosphoribulokinase; 93.8 0.44 9.4E-06 49.3 10.0 81 177-260 3-89 (290)
439 PRK14530 adenylate kinase; Pro 93.7 0.052 1.1E-06 55.0 3.3 24 180-203 4-27 (215)
440 TIGR03305 alt_F1F0_F1_bet alte 93.7 0.16 3.5E-06 56.4 7.3 92 178-271 137-242 (449)
441 PRK07594 type III secretion sy 93.7 0.28 6E-06 54.4 9.1 90 177-271 153-255 (433)
442 COG1124 DppF ABC-type dipeptid 93.7 0.082 1.8E-06 52.7 4.3 26 178-203 32-57 (252)
443 PF13086 AAA_11: AAA domain; P 93.7 0.11 2.4E-06 53.3 5.7 23 181-203 19-41 (236)
444 PF13306 LRR_5: Leucine rich r 93.6 0.23 5E-06 45.4 7.3 113 518-640 13-129 (129)
445 PF00158 Sigma54_activat: Sigm 93.6 0.31 6.6E-06 47.0 8.3 44 160-203 1-46 (168)
446 PRK13947 shikimate kinase; Pro 93.6 0.054 1.2E-06 52.6 3.1 23 181-203 3-25 (171)
447 PF08477 Miro: Miro-like prote 93.6 0.059 1.3E-06 48.6 3.2 22 182-203 2-23 (119)
448 TIGR01069 mutS2 MutS2 family p 93.6 0.072 1.6E-06 64.2 4.6 192 178-385 321-523 (771)
449 PRK14723 flhF flagellar biosyn 93.5 0.29 6.2E-06 58.0 9.3 87 179-271 185-273 (767)
450 cd01134 V_A-ATPase_A V/A-type 93.5 0.43 9.3E-06 50.9 9.6 96 170-270 147-263 (369)
451 PRK13407 bchI magnesium chelat 93.5 0.096 2.1E-06 56.3 5.0 46 158-203 8-53 (334)
452 COG1419 FlhF Flagellar GTP-bin 93.5 0.58 1.3E-05 50.7 10.7 85 167-254 187-276 (407)
453 KOG0726 26S proteasome regulat 93.5 0.27 5.8E-06 49.9 7.6 46 158-203 185-243 (440)
454 PF00625 Guanylate_kin: Guanyl 93.5 0.1 2.3E-06 51.3 4.9 36 179-217 2-37 (183)
455 COG4133 CcmA ABC-type transpor 93.5 0.27 5.7E-06 47.0 7.2 25 179-203 28-52 (209)
456 TIGR03878 thermo_KaiC_2 KaiC d 93.5 0.18 3.9E-06 52.6 6.8 40 178-220 35-74 (259)
457 KOG0736 Peroxisome assembly fa 93.5 0.34 7.4E-06 55.9 9.3 92 158-272 672-775 (953)
458 cd01136 ATPase_flagellum-secre 93.4 0.29 6.2E-06 52.3 8.4 89 178-271 68-169 (326)
459 PRK05917 DNA polymerase III su 93.4 1.6 3.4E-05 45.8 13.6 129 166-317 5-154 (290)
460 cd01132 F1_ATPase_alpha F1 ATP 93.4 0.37 8.1E-06 49.8 8.9 89 178-271 68-171 (274)
461 KOG0729 26S proteasome regulat 93.4 0.27 5.9E-06 49.1 7.4 90 158-271 177-280 (435)
462 TIGR03263 guanyl_kin guanylate 93.4 0.059 1.3E-06 52.9 3.0 24 180-203 2-25 (180)
463 PRK05800 cobU adenosylcobinami 93.4 0.28 6.1E-06 47.3 7.6 82 181-270 3-85 (170)
464 COG3854 SpoIIIAA ncharacterize 93.4 0.23 5E-06 48.8 6.7 121 170-301 128-254 (308)
465 PRK10416 signal recognition pa 93.4 0.42 9.1E-06 51.3 9.6 26 178-203 113-138 (318)
466 PRK05922 type III secretion sy 93.3 0.31 6.7E-06 54.0 8.7 90 177-271 155-257 (434)
467 cd02029 PRK_like Phosphoribulo 93.3 0.36 7.9E-06 49.5 8.4 78 181-261 1-84 (277)
468 cd00071 GMPK Guanosine monopho 93.3 0.071 1.5E-06 49.5 3.2 23 181-203 1-23 (137)
469 PRK13975 thymidylate kinase; P 93.3 0.072 1.6E-06 53.1 3.5 24 180-203 3-26 (196)
470 cd03213 ABCG_EPDR ABCG transpo 93.3 0.19 4.2E-06 49.9 6.5 26 178-203 34-59 (194)
471 PF12061 DUF3542: Protein of u 93.2 0.091 2E-06 53.6 4.0 72 14-92 302-373 (402)
472 TIGR01039 atpD ATP synthase, F 93.2 0.28 6.1E-06 54.5 8.1 92 178-271 142-247 (461)
473 PRK05057 aroK shikimate kinase 93.2 0.078 1.7E-06 51.5 3.5 25 179-203 4-28 (172)
474 cd00464 SK Shikimate kinase (S 93.2 0.069 1.5E-06 50.8 3.1 22 182-203 2-23 (154)
475 COG0714 MoxR-like ATPases [Gen 93.2 0.21 4.5E-06 54.4 7.2 64 158-229 24-87 (329)
476 PF13604 AAA_30: AAA domain; P 93.2 0.14 3E-06 50.9 5.3 37 167-203 6-42 (196)
477 PRK05688 fliI flagellum-specif 93.2 0.32 7E-06 54.1 8.6 89 178-271 167-268 (451)
478 cd01122 GP4d_helicase GP4d_hel 93.2 0.57 1.2E-05 49.4 10.3 53 178-234 29-81 (271)
479 PRK05986 cob(I)alamin adenolsy 93.1 0.28 6.1E-06 47.7 7.1 119 178-300 21-158 (191)
480 PTZ00494 tuzin-like protein; P 93.1 1.6 3.5E-05 47.6 13.1 163 157-330 370-544 (664)
481 PF03215 Rad17: Rad17 cell cyc 93.1 0.14 3.1E-06 58.5 5.7 55 159-218 20-79 (519)
482 PRK15064 ABC transporter ATP-b 93.1 0.41 8.8E-06 56.0 9.8 26 178-203 26-51 (530)
483 PRK00300 gmk guanylate kinase; 93.1 0.077 1.7E-06 53.3 3.3 26 178-203 4-29 (205)
484 PRK12339 2-phosphoglycerate ki 93.0 0.091 2E-06 52.0 3.7 25 179-203 3-27 (197)
485 PRK14527 adenylate kinase; Pro 93.0 0.086 1.9E-06 52.3 3.5 26 178-203 5-30 (191)
486 PRK09099 type III secretion sy 93.0 0.31 6.7E-06 54.3 8.1 90 177-271 161-263 (441)
487 TIGR01313 therm_gnt_kin carboh 93.0 0.066 1.4E-06 51.5 2.6 22 182-203 1-22 (163)
488 PF03029 ATP_bind_1: Conserved 93.0 0.083 1.8E-06 54.1 3.4 20 184-203 1-20 (238)
489 COG1126 GlnQ ABC-type polar am 93.0 0.079 1.7E-06 51.7 3.0 36 178-217 27-62 (240)
490 COG0003 ArsA Predicted ATPase 93.0 0.15 3.2E-06 54.3 5.4 48 179-229 2-49 (322)
491 TIGR01041 ATP_syn_B_arch ATP s 93.0 0.32 7E-06 54.4 8.2 93 178-271 140-248 (458)
492 smart00534 MUTSac ATPase domai 92.9 0.034 7.4E-07 54.8 0.5 118 181-306 1-128 (185)
493 PRK10078 ribose 1,5-bisphospho 92.9 0.078 1.7E-06 52.3 3.1 24 180-203 3-26 (186)
494 PRK03846 adenylylsulfate kinas 92.9 0.1 2.2E-06 52.1 3.8 27 177-203 22-48 (198)
495 TIGR01040 V-ATPase_V1_B V-type 92.9 0.33 7.1E-06 53.8 8.0 93 178-271 140-257 (466)
496 COG2019 AdkA Archaeal adenylat 92.9 0.097 2.1E-06 48.7 3.3 47 179-238 4-50 (189)
497 TIGR01420 pilT_fam pilus retra 92.9 0.22 4.7E-06 54.4 6.7 112 177-301 120-231 (343)
498 PRK13948 shikimate kinase; Pro 92.8 0.1 2.2E-06 50.9 3.7 26 178-203 9-34 (182)
499 PLN02200 adenylate kinase fami 92.8 0.1 2.2E-06 53.4 3.7 26 178-203 42-67 (234)
500 COG0396 sufC Cysteine desulfur 92.8 0.4 8.6E-06 47.4 7.5 60 250-312 151-216 (251)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-101 Score=901.66 Aligned_cols=852 Identities=39% Similarity=0.664 Sum_probs=703.3
Q ss_pred CCcccccccChhhhhhHHHHhhhccceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 037222 1 MCSIFQIACDGALFNRCLDCFLGKAAYLRNLPDNLVDLETELGRLIAAKNDVMMRVVNAERQQMRRLGQVEWWVSRVDAV 80 (904)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~~~~~ 80 (904)
|+++++.. ++++.+.+.+++..+.++++.+..+++++..|+.++.| ++.++.. ...+..|.+.++++
T Consensus 1 ~~~~~s~~-----~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFG-----VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEe-----hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHH
Confidence 44555544 55678899999999999999999999999999999999 4544432 36788999999999
Q ss_pred HHHHHHHHhhhhhhhcc----------------ccccCccCCCchhhchHHHHHHHHHHHHHHHHHcCCceecccccCCC
Q 037222 81 KTGADELITDGSEEIGE----------------LCVGGYCSKNCRSSYKFGKQVAKKLQDVKALIAEGVFEAVATEVVPE 144 (904)
Q Consensus 81 ~~~~ed~~d~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (904)
+|++||+++.|..+... -|+.+++.+....-+.+++++...+++++.+..++.|..+...
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~---- 143 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES---- 143 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc----
Confidence 99999999998754322 2333555666677778889999999999998877766655421
Q ss_pred CCCCCCcccCCccccc-cchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC
Q 037222 145 RAPEPVADERPIERTV-VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 145 ~~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 223 (904)
..+......+|..+.. ||.+..++++.+.|.+++..+++|+||||+||||||++++++...++.+||.++||+||+.++
T Consensus 144 ~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred ccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 1122222222322333 999999999999999988899999999999999999999999933899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhh
Q 037222 224 LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
...++++|++.++.....+.....++.+..|.+.|++|||+|||||||+..+|+.++.++| ...+|+||++|||+++||
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVC 302 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhh
Confidence 9999999999998866655666668899999999999999999999999999999999999 788999999999999999
Q ss_pred cc-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 037222 304 GS-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVL 382 (904)
Q Consensus 304 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l 382 (904)
.. +++...++++.|+.+|||+||++.++.......+.++++|++|+++|+|+|||++++|+.|+.|++..+|+++.+.+
T Consensus 303 ~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l 382 (889)
T KOG4658|consen 303 GRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVL 382 (889)
T ss_pred hccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccc
Confidence 98 88889999999999999999999999887666677999999999999999999999999999999999999999999
Q ss_pred hhc-hhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccC-cchhcHHHHHHHHHH
Q 037222 383 RRS-AFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEE-SDRFSAENQGYYIVG 460 (904)
Q Consensus 383 ~~~-~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~-~~~~~~~~~~~~~~~ 460 (904)
.+. ..+.+++.+.+++++.+||++||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+..++++|+.|+.
T Consensus 383 ~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~ 461 (889)
T KOG4658|consen 383 KSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIE 461 (889)
T ss_pred cccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHH
Confidence 887 555667778999999999999995 99999999999999999999999999999999999 668899999999999
Q ss_pred HHHHhccccccc----CCeeehhhHHHHHHHHHHhhhcccc-eEEEEcCCCcccCcccccccceeEEEeeccccccccCC
Q 037222 461 TLIHACLLEGIE----DDRVKMHDVVRDMALWIACEIEERR-HFLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEV 535 (904)
Q Consensus 461 ~L~~~~ll~~~~----~~~~~mHdlv~d~a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~ 535 (904)
+|+++||++..+ ..+|+|||+|||+|.++|++.++++ ++++..+....+.|....+..+|+++++++.+..++..
T Consensus 462 ~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~ 541 (889)
T KOG4658|consen 462 ELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS 541 (889)
T ss_pred HHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC
Confidence 999999999863 4799999999999999999766543 57777666667788888899999999999999998888
Q ss_pred CCCCCceEEEeecCcc-cccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCC
Q 037222 536 PTCPDLLTLFLDFNEE-LEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNL 614 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~-l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L 614 (904)
..+++|++|.+..+.. +..++..||..|+.|+||||++|..+. .+|++|++|.|||||+++++.++.||.++++|.+|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 9999999999995543 788999999999999999999987788 99999999999999999999999999999999999
Q ss_pred cEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHh
Q 037222 615 KCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIF 694 (904)
Q Consensus 615 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l 694 (904)
.+|++..+..+..+|. ++..|++||+|.+...... .+...+.++..|++|+.+.+...+...++.+
T Consensus 621 ~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~-------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l 686 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS-------------NDKLLLKELENLEHLENLSITISSVLLLEDL 686 (889)
T ss_pred heeccccccccccccc-hhhhcccccEEEeeccccc-------------cchhhHHhhhcccchhhheeecchhHhHhhh
Confidence 9999999977777754 4667999999999865422 1566788899999999988876555334444
Q ss_pred hhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCc-ccCCccEEeEeccC
Q 037222 695 LSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPF-VFRSLHRVTIFSCG 773 (904)
Q Consensus 695 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~c~ 773 (904)
.....+.+..+.+.+.++...+ ...++..+.+|++|.|.+|...+.. ..|... .... .|++|..+.+.+|.
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~----~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCGISEIV-IEWEES----LIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred hhhHHHHHHhHhhhhcccccce---eecccccccCcceEEEEcCCCchhh-cccccc----cchhhhHHHHHHHHhhccc
Confidence 4444444445555554432222 2257788999999999999876532 333321 0111 37789999999999
Q ss_pred CCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEe-ecccccccccccCCCCCCCCcceEee
Q 037222 774 KLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSL-HLSYLPILRSIYWKPLPFTHLKKMEV 852 (904)
Q Consensus 774 ~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~i~~~~~~~~~L~~L~i 852 (904)
....+.|....|+|+.|.+..|..++++++....... .......|.++..+ .+.+.+.+..+.+....++.|+.+.+
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~v 836 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIV 836 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccccceeeecCCCCceeEecccCccchhheeh
Confidence 9999999889999999999999999998764332211 10123456677777 57788888888888888899999999
Q ss_pred ccCCCCCCCCCCCCccCC---CceEEEehhhhccccccCchhhhhhc
Q 037222 853 RRCDQLRRLPLDSNSATE---RNVVIRGYTLWWNRLQWEDEATQIAF 896 (904)
Q Consensus 853 ~~C~~L~~lp~~~~~~~~---~l~~i~~~~~~~~~l~~~~~~~~~~~ 896 (904)
..||++..+|........ ......-+.+|-+.+.|+++.++..+
T Consensus 837 e~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 837 EECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred hcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 999999999997665411 22333334567889999999888766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-62 Score=612.82 Aligned_cols=642 Identities=21% Similarity=0.275 Sum_probs=414.4
Q ss_pred ccccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe---cCC-----------
Q 037222 158 RTVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV---SKD----------- 221 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~----------- 221 (904)
..+|||+..++++..+|.- +++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 5689999999999998853 578999999999999999999999987 578998888742 111
Q ss_pred CC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecch
Q 037222 222 LR-LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 222 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
++ ...+..+++.++..... ..... ...+++.++++|+||||||||+...|+.+..... ..+.||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcH
Confidence 01 12344455544422111 01111 2456778999999999999999989998876655 667899999999999
Q ss_pred hhhccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHH
Q 037222 301 DVCGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVE 380 (904)
Q Consensus 301 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~ 380 (904)
.++..++..++|+++.|+.++||+||+++||... ..++++.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998877788999999999999999999998765 345678899999999999999999999999997 57899999999
Q ss_pred HHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHH
Q 037222 381 VLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG 460 (904)
Q Consensus 381 ~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 460 (904)
.++... ++++..+|++||++|+++..|.||+++|+|+.++.++ .+..|++.+.... +..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 887643 3479999999999998746899999999999887654 3677888765432 22388
Q ss_pred HHHHhcccccccCCeeehhhHHHHHHHHHHhhhccc---ceEEEEcCCCcccC-cc------------------------
Q 037222 461 TLIHACLLEGIEDDRVKMHDVVRDMALWIACEIEER---RHFLVCAGAGLEQA-PA------------------------ 512 (904)
Q Consensus 461 ~L~~~~ll~~~~~~~~~mHdlv~d~a~~i~~~~~~~---~~~~~~~~~~~~~~-~~------------------------ 512 (904)
.|+++||++.. ..+++|||++|++|+++++++..+ ..+++... ++..+ ..
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 99999999876 468999999999999999765311 12322110 00000 00
Q ss_pred --cccc-------------------------------cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchh
Q 037222 513 --VRES-------------------------------ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGF 559 (904)
Q Consensus 513 --~~~~-------------------------------~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 559 (904)
.... ..+|.|.+.++.+..+|......+|+.|++. .+.+..++.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~~- 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWDG- 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc-Cccccccccc-
Confidence 0011 2244444444444444444445566666666 3445555554
Q ss_pred hcCCCcccEEEeecCCCcccccCccccccccCcEeecccC-cccccchhhhcCCCCcEeeccccccccccchhhhcCCCC
Q 037222 560 FQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT-EIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSG 638 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~-~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~ 638 (904)
+..+++|++|+|+++..++ .+| .++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.+ + ++++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~s 705 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKS 705 (1153)
T ss_pred cccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCC
Confidence 4566666777766653444 555 3666666777777665 45666666667777777777766666666654 3 5666
Q ss_pred CceeeecccCCcccccCC----CCccccCCCccchHhhcCCCCCcEEEEEecchhhHH----Hhh-hcccccccceeeEe
Q 037222 639 LRVLRMFATGYECFHEAP----EDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQ----IFL-SSNKLKSCIRSLFL 709 (904)
Q Consensus 639 L~~L~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~----~l~-~~~~~~~~L~~L~L 709 (904)
|++|++.+|.....-... ....+.......+.....+++|+.|.+.......+. .+. .....+++|+.|.|
T Consensus 706 L~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 777766665432100000 000000000000000012233333332211100000 000 00011234555555
Q ss_pred cccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcccccCCCccE
Q 037222 710 QLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKS 789 (904)
Q Consensus 710 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 789 (904)
++|.....++ ..+.++++|+.|+|++|..++.+ |.. ..+++|+.|++++|..+..+|.+ .++|+.
T Consensus 786 s~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~L-P~~----------~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~ 850 (1153)
T PLN03210 786 SDIPSLVELP--SSIQNLHKLEHLEIENCINLETL-PTG----------INLESLESLDLSGCSRLRTFPDI--STNISD 850 (1153)
T ss_pred CCCCCccccC--hhhhCCCCCCEEECCCCCCcCee-CCC----------CCccccCEEECCCCCcccccccc--ccccCE
Confidence 5544333222 34455555555555555554432 111 13455555555555555444332 245555
Q ss_pred EeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCCCC
Q 037222 790 LELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDS 865 (904)
Q Consensus 790 L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 865 (904)
|+|+++ .++.++. .+..+++|+.|+|++|++++.++.....+++|+.|++++|++|+.++...
T Consensus 851 L~Ls~n-~i~~iP~------------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 851 LNLSRT-GIEEVPW------------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred eECCCC-CCccChH------------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence 555542 3333332 46778999999999999999998888889999999999999999877643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.5e-45 Score=389.57 Aligned_cols=280 Identities=36% Similarity=0.648 Sum_probs=232.7
Q ss_pred hHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 037222 163 LQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDD 240 (904)
Q Consensus 163 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (904)
||.++++|.++|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.+++..+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 789999999999999999999999996 468999999999999999999999999999988754
Q ss_pred CC-CCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhccccC-CceeecccCC
Q 037222 241 SW-KNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGSMEA-DRKFLVACLS 318 (904)
Q Consensus 241 ~~-~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l~~L~ 318 (904)
.. ...+.+.....+.+.|+++++||||||||+...|+.+...++ ....|++||||||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 33 556788899999999999999999999999999999988887 67789999999999999877665 6789999999
Q ss_pred HHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhchhccCCchhhhHh
Q 037222 319 EKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVLRRSAFEFAGLGKEVYP 398 (904)
Q Consensus 319 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~ 398 (904)
.+||++||.+.++.......+.+++++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999976542334556778999999999999999999999977667889999998888776544444578999
Q ss_pred hHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccC
Q 037222 399 LLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEE 445 (904)
Q Consensus 399 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 445 (904)
++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++|||..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999 89999999999999999999999999999999986
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=9.5e-20 Score=228.38 Aligned_cols=333 Identities=19% Similarity=0.238 Sum_probs=167.2
Q ss_pred ceeEEEeeccccccc----cCCCCCCCceEEEeecCc-----c-cccccchhhcCC-CcccEEEeecCCCcccccCcccc
Q 037222 518 NVTRLSLMQNQIKIL----SEVPTCPDLLTLFLDFNE-----E-LEMIADGFFQFM-PSLKVLKISNCGNFTFQLPLGMS 586 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l----~~~~~~~~L~~L~l~~~~-----~-l~~~~~~~~~~l-~~Lr~L~l~~~~~i~~~lp~~i~ 586 (904)
.++.+++..+.+..+ ..+..+++|+.|.+..+. . ...+|.+ |..+ ..||+|++.++ .++ .+|..+
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~-~lP~~f- 608 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLR-CMPSNF- 608 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCC-CCCCcC-
Confidence 456666654444332 124678888888876321 0 1234544 3333 35777777777 666 677665
Q ss_pred ccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCc
Q 037222 587 KLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGE 666 (904)
Q Consensus 587 ~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 666 (904)
.+.+|+.|+++++.++.+|.++..+++|+.|++++|..+..+|. ++.+++|++|++.+|....
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~--------------- 671 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV--------------- 671 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc---------------
Confidence 45677777777777777777777777777777776656666664 6667777777776654321
Q ss_pred cchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeee
Q 037222 667 VLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKI 746 (904)
Q Consensus 667 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 746 (904)
.....+..+++|+.|+++.+. .+..++... .+++|+.|.+++|......+ ....+|+.|+++++.. ..+ |
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L~L~~n~i-~~l-P 741 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCE--NLEILPTGI-NLKSLYRLNLSGCSRLKSFP-----DISTNISWLDLDETAI-EEF-P 741 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCC--CcCccCCcC-CCCCCCEEeCCCCCCccccc-----cccCCcCeeecCCCcc-ccc-c
Confidence 112234455555555554321 112221111 12445555555543322111 0112333333333321 100 0
Q ss_pred cccccc--------------------c-cccCCcccCCccEEeEeccCCCCcCcc-cccCCCccEEeEecCccchhhccc
Q 037222 747 DYTEIV--------------------R-KRREPFVFRSLHRVTIFSCGKLKDVTF-LVFAPNLKSLELLQCDAMEEIISV 804 (904)
Q Consensus 747 ~~~~~~--------------------~-~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~ 804 (904)
...... . .+.....+++|+.|+|++|+.+..+|. ++.+++|+.|+|++|+.++.++..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 000000 0 000001234556666665555544442 555566666666665555544320
Q ss_pred CcccCC--------ccccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCCCCCcc-CCCceEE
Q 037222 805 GEIAET--------PEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDSNSA-TERNVVI 875 (904)
Q Consensus 805 ~~~~~~--------~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~-~~~l~~i 875 (904)
...... ..........++|+.|+|+++ .++.+|.....+++|+.|++.+|++|+.+|...... ......+
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred CCccccCEEECCCCCccccccccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 000000 000000011235555666554 255566556678999999999999999999876543 2223344
Q ss_pred Eehhhhc
Q 037222 876 RGYTLWW 882 (904)
Q Consensus 876 ~~~~~~~ 882 (904)
.+|..+.
T Consensus 901 ~~C~~L~ 907 (1153)
T PLN03210 901 SDCGALT 907 (1153)
T ss_pred CCCcccc
Confidence 5665553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=6.3e-20 Score=230.25 Aligned_cols=308 Identities=19% Similarity=0.158 Sum_probs=190.2
Q ss_pred ccceeEEEeeccccccccCCCCCCCceEEEeecCcccc-cccchhhcCCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 516 SENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELE-MIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
...+++|++++|.+....+...+++|++|+++ ++.+. .+|.. ++++++|++|++++| .+.+.+|..++++++|++|
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls-~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS-NNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECc-CCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCCee
Confidence 45677777777766543334567778888887 44444 34443 777888888888888 6655777788888888888
Q ss_pred ecccCccc-ccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhc
Q 037222 595 DISRTEIQ-ELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELL 673 (904)
Q Consensus 595 ~l~~~~i~-~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 673 (904)
++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.+.. .....+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p~~l~ 257 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---------------PIPSSLG 257 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc---------------ccChhHh
Confidence 88887664 56777888888888888877433456665 7788888888887776532 2334566
Q ss_pred CCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccc
Q 037222 674 GLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVR 753 (904)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 753 (904)
.+++|+.|+++.+..... ++.....+++|+.|++++|......+ ..+..+++|+.|++++|..... .+.++
T Consensus 258 ~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~n~~~~~-~~~~~---- 328 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIP--ELVIQLQNLEILHLFSNNFTGK-IPVAL---- 328 (968)
T ss_pred CCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCC--hhHcCCCCCcEEECCCCccCCc-CChhH----
Confidence 777777777765543210 11111123577777777764332222 3556677778887777654432 22222
Q ss_pred cccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccC------------cccCCccccCCCCCC
Q 037222 754 KRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVG------------EIAETPEMMGHISPF 820 (904)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~------------~~~~~~~~~~~~~~~ 820 (904)
..+++|+.|++++|.....+| .++.+++|+.|+|++|.....++..- ...-.......+..+
T Consensus 329 -----~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 329 -----TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred -----hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 256777777777775443444 36677777777777654332222100 000000111234567
Q ss_pred CcccEeecccccccccccCCCCCCCCcceEeeccCC
Q 037222 821 ENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCD 856 (904)
Q Consensus 821 ~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 856 (904)
++|+.|++++|.-...++.....+++|+.|++++|.
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 788888888776444555555667888888887763
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1e-19 Score=228.48 Aligned_cols=309 Identities=22% Similarity=0.214 Sum_probs=155.9
Q ss_pred ceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEee
Q 037222 518 NVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFD 595 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~ 595 (904)
+++.|+++++.+.... .+..+++|++|+++++.-...+|..++..+++|++|++++| ++++.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEE
Confidence 5666666666544321 23556667777776332223566665656666666666666 55534443 3456666666
Q ss_pred cccCccc-ccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCC----CC---cccc--CCC
Q 037222 596 ISRTEIQ-ELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAP----ED---SVLF--GGG 665 (904)
Q Consensus 596 l~~~~i~-~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----~~---~~~~--~~~ 665 (904)
+++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.+....... .. ..+. .-.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 6666554 45556666666666666665333344543 556666666666655443110000 00 0000 001
Q ss_pred ccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceee
Q 037222 666 EVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELK 745 (904)
Q Consensus 666 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 745 (904)
......+..+++|+.|+++.+.... .++.....+++|+.|.++++......+ ..+..+++|++|++++|..... .
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~-~ 300 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLSGE-I 300 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCc--hhHhhccCcCEEECcCCeeccC-C
Confidence 1122334555555555555443221 011111112455555555543222211 2444555666666655532221 2
Q ss_pred eccccccccccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCccc
Q 037222 746 IDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQ 824 (904)
Q Consensus 746 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 824 (904)
+.++ ..+++|+.|++++|.....+| .+..+++|+.|+|++|.....++. .+..+++|+
T Consensus 301 p~~~---------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------~l~~~~~L~ 359 (968)
T PLN00113 301 PELV---------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------NLGKHNNLT 359 (968)
T ss_pred ChhH---------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh------------HHhCCCCCc
Confidence 2222 256667777776664333333 356667777777766543333322 345667778
Q ss_pred EeecccccccccccCCCCCCCCcceEeeccCC
Q 037222 825 SLHLSYLPILRSIYWKPLPFTHLKKMEVRRCD 856 (904)
Q Consensus 825 ~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 856 (904)
.|+++++.-...++.....+++|+.|++++|+
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 88887765333444444556778888777653
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.4e-21 Score=207.87 Aligned_cols=352 Identities=18% Similarity=0.190 Sum_probs=195.5
Q ss_pred eEEEEcCCCcccCccc-ccccceeEEEeeccccccc-cCCCCCCCceEEEeecCccc--ccccchhhcCCCcccEEEeec
Q 037222 498 HFLVCAGAGLEQAPAV-RESENVTRLSLMQNQIKIL-SEVPTCPDLLTLFLDFNEEL--EMIADGFFQFMPSLKVLKISN 573 (904)
Q Consensus 498 ~~~~~~~~~~~~~~~~-~~~~~~r~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~l~~Lr~L~l~~ 573 (904)
.|.......+..+|.. ....++.||++..|.+..+ ..++.++.||++++.. +++ ..+|+++| .|..|.+||||+
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~-N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD-NNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc-cccccCCCCchhc-ccccceeeecch
Confidence 3444333344444421 2234566666666665543 2346666666666663 333 24566633 466666777777
Q ss_pred CCCcccccCccccccccCcEeecccCcccccchhh-hcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCccc
Q 037222 574 CGNFTFQLPLGMSKLGSLELFDISRTEIQELPEEL-KLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECF 652 (904)
Q Consensus 574 ~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~-~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 652 (904)
| .++ +.|..+.+-+++-.|+||+|+|..+|..+ .+|+-|-+|||++| .+..+|++ +..|.+|++|.+++|....+
T Consensus 113 N-qL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 113 N-QLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred h-hhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHH
Confidence 6 666 66666666666667777777776666654 46666666677666 66666666 66666677776666655432
Q ss_pred ccCC----CCc------cccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhh
Q 037222 653 HEAP----EDS------VLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAA 722 (904)
Q Consensus 653 ~~~~----~~~------~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 722 (904)
.... ... +....-......+..|.+|+.++++.|+...++.-.. ...+|++|+|+++... .+. .
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly---~l~~LrrLNLS~N~it-eL~--~ 262 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY---KLRNLRRLNLSGNKIT-ELN--M 262 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh---hhhhhheeccCcCcee-eee--c
Confidence 1110 000 0000011222334445555555555444333322111 1245666666655321 111 1
Q ss_pred hhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccC-CCCcCcc-cccCCCccEEeEecCccchh
Q 037222 723 AFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCG-KLKDVTF-LVFAPNLKSLELLQCDAMEE 800 (904)
Q Consensus 723 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~-~l~~l~~-l~~l~~L~~L~L~~c~~l~~ 800 (904)
....+.+|++|+++.|. +.. .|+.. ..+++|++|.+.+|. ..+.+|. +++|.+|+.+..++ +.++-
T Consensus 263 ~~~~W~~lEtLNlSrNQ-Lt~-LP~av---------cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LEl 330 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQ-LTV-LPDAV---------CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL 330 (1255)
T ss_pred cHHHHhhhhhhccccch-hcc-chHHH---------hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccccc
Confidence 23345566666666553 222 23333 256677777766663 2234454 67777777777765 34544
Q ss_pred hcccCcccCCccccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCCCCCccCCCceEEEehhh
Q 037222 801 IISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDSNSATERNVVIRGYTL 880 (904)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 880 (904)
+|. .+..|++|+.|.|+++. |-.+|..+.-+|.|+.|++.+.|+|.. |..++.....+...+-.-.
T Consensus 331 VPE------------glcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVM-PPKP~da~~~lefYNIDFS 396 (1255)
T KOG0444|consen 331 VPE------------GLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVM-PPKPNDARKKLEFYNIDFS 396 (1255)
T ss_pred Cch------------hhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccC-CCCcchhhhcceeeeccee
Confidence 443 57789999999998764 777888888899999999999999984 4444444333333333334
Q ss_pred hcccccc
Q 037222 881 WWNRLQW 887 (904)
Q Consensus 881 ~~~~l~~ 887 (904)
+.++++.
T Consensus 397 Lq~Qlrl 403 (1255)
T KOG0444|consen 397 LQHQLRL 403 (1255)
T ss_pred hhhHHhh
Confidence 4444444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.2e-21 Score=208.40 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=229.3
Q ss_pred ccceeEEEeeccccccccC-CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc-cccCccccccccCcE
Q 037222 516 SENVTRLSLMQNQIKILSE-VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT-FQLPLGMSKLGSLEL 593 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~-~~lp~~i~~L~~L~~ 593 (904)
...++.|-+....+..+|. +..|.+|+.|.+. .+.+..+... ++.++.||.+++..| +++ .-+|..|-.|..|..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~-HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMA-HNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhh-hhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhccccccee
Confidence 4578888888877777765 5889999999999 5557677665 789999999999999 876 348999999999999
Q ss_pred eecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhc
Q 037222 594 FDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELL 673 (904)
Q Consensus 594 L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 673 (904)
||||+|++++.|..+.+-+++-.|+|++| .+..+|..++.+|+-|-.|+++.|.... ....+.
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~----------------LPPQ~R 170 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM----------------LPPQIR 170 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh----------------cCHHHH
Confidence 99999999999999999999999999999 8999999989999999999999987764 334466
Q ss_pred CCCCCcEEEEEecchhhHH--HhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccc
Q 037222 674 GLKYLEVLELTLGSYQALQ--IFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEI 751 (904)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 751 (904)
.|.+|++|.++.|....++ .++. +++|+.|++++... +...++.++..+.||..++++.|. +.. .|+..
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~-vPecl-- 241 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LPI-VPECL-- 241 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CCc-chHHH--
Confidence 7778888888776654332 2221 35666666666432 222333566677777777777553 332 23322
Q ss_pred cccccCCcccCCccEEeEeccCCCCcCcc-cccCCCccEEeEecCccchhhcc-------------cCcccCCccccCCC
Q 037222 752 VRKRREPFVFRSLHRVTIFSCGKLKDVTF-LVFAPNLKSLELLQCDAMEEIIS-------------VGEIAETPEMMGHI 817 (904)
Q Consensus 752 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~~~~-------------~~~~~~~~~~~~~~ 817 (904)
-.+++|++|+|++| .++.+.. .+...+|++|+++. +.++.+|. +.+.-...++.+.+
T Consensus 242 -------y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 242 -------YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred -------hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 25677777777776 4444432 45566677777766 33444432 11222233455567
Q ss_pred CCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCCCCCccCCCceEEE
Q 037222 818 SPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDSNSATERNVVIR 876 (904)
Q Consensus 818 ~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~ 876 (904)
+.+.+|+.+...++ +|+-.|.+...|+.|++|.+ +|+.|..||.++.. ++.+.+.+
T Consensus 313 GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHl-L~~l~vLD 368 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHL-LPDLKVLD 368 (1255)
T ss_pred hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcc-cccceeechhhhhh-cCCcceee
Confidence 77778888888775 37777777778899999988 56899999988765 35555554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=4e-20 Score=196.07 Aligned_cols=314 Identities=18% Similarity=0.211 Sum_probs=200.0
Q ss_pred cccCcccccc-cceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc
Q 037222 507 LEQAPAVRES-ENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL 583 (904)
Q Consensus 507 ~~~~~~~~~~-~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~ 583 (904)
+..+|..... ..+.+|++..|.+..+.. +.-++.||+|+++ .+.+..++...|..-.++++|+|++| .|+.---.
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS-rN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~ 191 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS-RNLISEIPKPSFPAKVNIKKLNLASN-RITTLETG 191 (873)
T ss_pred hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh-hchhhcccCCCCCCCCCceEEeeccc-cccccccc
Confidence 3344443332 357777777777666533 3566777777777 55566777665666667777777777 77623334
Q ss_pred cccccccCcEeecccCcccccchhh-hcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCcccc
Q 037222 584 GMSKLGSLELFDISRTEIQELPEEL-KLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLF 662 (904)
Q Consensus 584 ~i~~L~~L~~L~l~~~~i~~Lp~~~-~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 662 (904)
.+..|.+|-.|.|+.|.|+.||... .+|++|+.|+|..| .+..+-.-.|.+|++|+.|.+..|.+....-+
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG------- 263 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG------- 263 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCc-------
Confidence 5667777777777777777777643 44777777777777 55555433467777777777777765432211
Q ss_pred CCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcc
Q 037222 663 GGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELE 742 (904)
Q Consensus 663 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 742 (904)
.+..+.++++|++..|....+..-. ...++.|+.|+|+.+.....-. ...+.+++|++|+++.|.. .
T Consensus 264 --------~Fy~l~kme~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~i-~ 330 (873)
T KOG4194|consen 264 --------AFYGLEKMEHLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNRI-T 330 (873)
T ss_pred --------ceeeecccceeecccchhhhhhccc--ccccchhhhhccchhhhheeec--chhhhcccceeEecccccc-c
Confidence 1556777778887766554443211 1123677788888765432222 3566678888888887643 3
Q ss_pred eeeeccccccccccCCcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCC
Q 037222 743 ELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPF 820 (904)
Q Consensus 743 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 820 (904)
.+....+ ..++.|+.|.|+.| .++.+.. +..+++|+.|+|+.+ .+.-.+. +....+.++
T Consensus 331 ~l~~~sf---------~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N-~ls~~IE--------Daa~~f~gl 391 (873)
T KOG4194|consen 331 RLDEGSF---------RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIE--------DAAVAFNGL 391 (873)
T ss_pred cCChhHH---------HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCC-eEEEEEe--------cchhhhccc
Confidence 3444433 36788888888888 5565543 667888888888774 3443333 112256778
Q ss_pred CcccEeecccccccccccCC-CCCCCCcceEeeccCCCCCCCCCC
Q 037222 821 ENLQSLHLSYLPILRSIYWK-PLPFTHLKKMEVRRCDQLRRLPLD 864 (904)
Q Consensus 821 ~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~ 864 (904)
|+|++|.|.++. ++.|+.. ...+++|+.|++.+ +.+.++..+
T Consensus 392 ~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~-NaiaSIq~n 434 (873)
T KOG4194|consen 392 PSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGD-NAIASIQPN 434 (873)
T ss_pred hhhhheeecCce-eeecchhhhccCcccceecCCC-Ccceeeccc
Confidence 899999998875 8887753 34588888888876 455555443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1e-19 Score=193.00 Aligned_cols=310 Identities=16% Similarity=0.203 Sum_probs=219.8
Q ss_pred ccceeEEEeeccccccccCCCC-CCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcE
Q 037222 516 SENVTRLSLMQNQIKILSEVPT-CPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLEL 593 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~ 593 (904)
..++..+++..|.++.+|.+.. ..+|+.|++. ++.+..+..+-++.++.||+||||.| .|. .+|. ++..-.++++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~-~N~I~sv~se~L~~l~alrslDLSrN-~is-~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR-HNLISSVTSEELSALPALRSLDLSRN-LIS-EIPKPSFPAKVNIKK 177 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeee-ccccccccHHHHHhHhhhhhhhhhhc-hhh-cccCCCCCCCCCceE
Confidence 3466777777777777777644 3458888888 66677777666778888888888888 777 6653 3445567888
Q ss_pred eecccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhh
Q 037222 594 FDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQEL 672 (904)
Q Consensus 594 L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 672 (904)
|+|++|.|+.+-. .+..|.+|-+|.|++| .++.+|..+|.+|++|+.|++..|.+...+.. .+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~l---------------tF 241 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGL---------------TF 241 (873)
T ss_pred EeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhh---------------hh
Confidence 8888888887744 5677888888888888 78888887788899999998888876532221 25
Q ss_pred cCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeee-ccccc
Q 037222 673 LGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKI-DYTEI 751 (904)
Q Consensus 673 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~-~~~~~ 751 (904)
.+|++|+.|.+..|+...++.-... .+..++.|+|..+.-..... ..+-+++.|+.|+++.|..-. +.+ .|.
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~r-ih~d~Ws-- 314 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQR-IHIDSWS-- 314 (873)
T ss_pred cCchhhhhhhhhhcCcccccCccee--eecccceeecccchhhhhhc--ccccccchhhhhccchhhhhe-eecchhh--
Confidence 6777777777777776665542221 24678888888764322211 356678999999999876443 333 342
Q ss_pred cccccCCcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecc
Q 037222 752 VRKRREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLS 829 (904)
Q Consensus 752 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 829 (904)
..++|+.|+|++| .++.++. +..|..|++|.|+. +.+..+-. ..+.++.+|++|+|+
T Consensus 315 --------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e-----------~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 315 --------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAE-----------GAFVGLSSLHKLDLR 373 (873)
T ss_pred --------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHh-----------hHHHHhhhhhhhcCc
Confidence 6789999999998 6666664 77899999999988 45666532 257788999999999
Q ss_pred cccccccccC-----CCCCCCCcceEeeccCCCCCCCCCCCCccCCCceEE
Q 037222 830 YLPILRSIYW-----KPLPFTHLKKMEVRRCDQLRRLPLDSNSATERNVVI 875 (904)
Q Consensus 830 ~~~~L~~i~~-----~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i 875 (904)
++. +. |.. ....+|+|++|.+.+ ++|+.+|.-..+.++.|...
T Consensus 374 ~N~-ls-~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 374 SNE-LS-WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred CCe-EE-EEEecchhhhccchhhhheeecC-ceeeecchhhhccCccccee
Confidence 865 22 222 233499999999988 68888887655554444444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=2.2e-17 Score=168.21 Aligned_cols=323 Identities=20% Similarity=0.250 Sum_probs=184.1
Q ss_pred cccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCc
Q 037222 513 VRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLE 592 (904)
Q Consensus 513 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~ 592 (904)
..+..++..+++..|.+..+|.+..|+.|..|++. .+.+..+|....+++.+|.+||+.++ .++ +.|..++.|.+|.
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g-~N~i~~lpae~~~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG-ENQIEMLPAEHLKHLNSLLVLDLRDN-KLK-EVPDEICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc-ccHHHhhHHHHhcccccceeeecccc-ccc-cCchHHHHhhhhh
Confidence 34456777788888999889999999999999998 77888888887889999999999999 899 9999999999999
Q ss_pred EeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCC--CCceeee--cccCCcccccCCCCccccCCCccc
Q 037222 593 LFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSS--GLRVLRM--FATGYECFHEAPEDSVLFGGGEVL 668 (904)
Q Consensus 593 ~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~--~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~ 668 (904)
+||+++|.|..+|.+++++ +|+.|-+-|| -+..+-.+.+++=+ =|++|.- ..-+....+-. ...........
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~--~e~~~t~~~~~ 354 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG--TETAMTLPSES 354 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc--ccccCCCCCCc
Confidence 9999999999999999998 9999999888 55666555333211 1222221 11111110000 00000111112
Q ss_pred hHhhcCCCCCcEEEEEecchhhHHH-hhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeec
Q 037222 669 VQELLGLKYLEVLELTLGSYQALQI-FLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKID 747 (904)
Q Consensus 669 ~~~l~~L~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 747 (904)
......+.+.+.|+++....+.++. ...... ..-..+.+++.+.- .+++..+..+..+.+.-+..+....
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL---~elPk~L~~lkelvT~l~lsnn~is----- 425 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQL---CELPKRLVELKELVTDLVLSNNKIS----- 425 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchH---hhhhhhhHHHHHHHHHHHhhcCccc-----
Confidence 2233334445555554332222111 000000 01233344443321 1111122222222222222222221
Q ss_pred cccccccccCCcccCCccEEeEeccCCCCcCcc-cccCCCccEEeEecCccchhhcc-------------c-CcccCCcc
Q 037222 748 YTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF-LVFAPNLKSLELLQCDAMEEIIS-------------V-GEIAETPE 812 (904)
Q Consensus 748 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~~~~-------------~-~~~~~~~~ 812 (904)
|. +.....+++|..|+|++| .+.++|. ++.+..|+.|+|+.+ ....+|. . ...+..+
T Consensus 426 fv-----~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd- 497 (565)
T KOG0472|consen 426 FV-----PLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVD- 497 (565)
T ss_pred cc-----hHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccC-
Confidence 11 111235666666666665 3444443 555666666666653 2222211 0 1111110
Q ss_pred ccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCC
Q 037222 813 MMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPL 863 (904)
Q Consensus 813 ~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 863 (904)
...+..+.+|..|+|.++. ++.+|...+.|.+|++|.+++. ..+ .|.
T Consensus 498 -~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gN-pfr-~Pr 544 (565)
T KOG0472|consen 498 -PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGN-PFR-QPR 544 (565)
T ss_pred -hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCC-ccC-CCH
Confidence 1136678899999998875 8999999999999999999995 444 554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=3e-16 Score=176.10 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=37.9
Q ss_pred cceeEEEeeccccccccC-CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc
Q 037222 517 ENVTRLSLMQNQIKILSE-VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT 578 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~ 578 (904)
.+++++.++.|.+..+|. ..++.+|+.|.+. |+.+..+|.+ +..+++|.+||++++ .+.
T Consensus 68 ~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~-~~~lknl~~LdlS~N-~f~ 127 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK-NNRLQSLPAS-ISELKNLQYLDLSFN-HFG 127 (1081)
T ss_pred HHHhhcccchhhHhhCchhhhhhhcchhheec-cchhhcCchh-HHhhhcccccccchh-ccC
Confidence 356666666666666553 2566677777777 6666666666 666777777777766 443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.1e-13 Score=161.02 Aligned_cols=251 Identities=22% Similarity=0.220 Sum_probs=137.0
Q ss_pred EEEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT 578 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~ 578 (904)
.+......+..+|..- ...++.|.+..|.+..+|.. .++|++|+++ +|.+..+|.. .++|+.|++++| .++
T Consensus 205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~l----p~sL~~L~Ls~N-~L~ 275 (788)
T PRK15387 205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPVL----PPGLLELSIFSN-PLT 275 (788)
T ss_pred EEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccCc----ccccceeeccCC-chh
Confidence 3444444555555422 23567777777777766543 4677777777 4556666642 356777777777 666
Q ss_pred cccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCC
Q 037222 579 FQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPED 658 (904)
Q Consensus 579 ~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 658 (904)
.+|.. ..+|+.|++++|+++.+|.. +++|++|++++| .++.+|.. . .+|+.|++.+|.+..
T Consensus 276 -~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~------- 336 (788)
T PRK15387 276 -HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS------- 336 (788)
T ss_pred -hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccc-------
Confidence 66643 24566777777777777652 356777777777 66666641 2 345666666665432
Q ss_pred ccccCCCccchHhhcCC-CCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecc
Q 037222 659 SVLFGGGEVLVQELLGL-KYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYE 737 (904)
Q Consensus 659 ~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 737 (904)
+..+ .+|+.|+++.|....++. ...+|+.|.++++.-. .++ . .+.+|+.|++++
T Consensus 337 -------------LP~lp~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~-~LP---~--l~~~L~~LdLs~ 391 (788)
T PRK15387 337 -------------LPTLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLP---A--LPSGLKELIVSG 391 (788)
T ss_pred -------------ccccccccceEecCCCccCCCCC------CCcccceehhhccccc-cCc---c--cccccceEEecC
Confidence 1111 356666666554443322 1235556665554321 111 1 124566666665
Q ss_pred cCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCC
Q 037222 738 GIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHI 817 (904)
Q Consensus 738 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 817 (904)
|.. ..+ + ..+++|+.|++++| .+..+|.+ ..+|+.|++++| .++.++. .+
T Consensus 392 N~L-t~L-P------------~l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~------------sl 441 (788)
T PRK15387 392 NRL-TSL-P------------VLPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE------------SL 441 (788)
T ss_pred Ccc-cCC-C------------CcccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh------------HH
Confidence 532 211 1 12345666666666 34444432 235666666653 3444433 34
Q ss_pred CCCCcccEeeccccc
Q 037222 818 SPFENLQSLHLSYLP 832 (904)
Q Consensus 818 ~~~~~L~~L~L~~~~ 832 (904)
..+++|+.|+|++++
T Consensus 442 ~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 IHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCCCeEECCCCC
Confidence 456666666666654
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.1e-16 Score=163.04 Aligned_cols=252 Identities=22% Similarity=0.318 Sum_probs=145.9
Q ss_pred CCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcEee
Q 037222 539 PDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLN 618 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~ 618 (904)
..+..|+++ ++.+..+.++ +.++..|.+|+++++ .+. .+|.+|+.+..++.|+.++|++.++|+.++.+.+|.+|+
T Consensus 45 v~l~~lils-~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILS-HNDLEVLRED-LKNLACLTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhc-cCchhhccHh-hhcccceeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 345566666 5556666555 677888888888888 777 888888888888888888888888888888888888888
Q ss_pred ccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcc
Q 037222 619 LRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSN 698 (904)
Q Consensus 619 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~ 698 (904)
.+.+ .+..+|.+ |+.+..|..|+...|++.. ..+.+.++.+|..+++..+....+.
T Consensus 121 ~s~n-~~~el~~~-i~~~~~l~dl~~~~N~i~s----------------lp~~~~~~~~l~~l~~~~n~l~~l~------ 176 (565)
T KOG0472|consen 121 CSSN-ELKELPDS-IGRLLDLEDLDATNNQISS----------------LPEDMVNLSKLSKLDLEGNKLKALP------ 176 (565)
T ss_pred cccc-ceeecCch-HHHHhhhhhhhcccccccc----------------CchHHHHHHHHHHhhccccchhhCC------
Confidence 8877 66777776 7788888888777766653 1222233333333333222111110
Q ss_pred cccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcC
Q 037222 699 KLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDV 778 (904)
Q Consensus 699 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 778 (904)
...-.|+.|++|+...+ .++.+ | +..+.+.+|..|++..| ++..+
T Consensus 177 -----------------------~~~i~m~~L~~ld~~~N-~L~tl-P---------~~lg~l~~L~~LyL~~N-ki~~l 221 (565)
T KOG0472|consen 177 -----------------------ENHIAMKRLKHLDCNSN-LLETL-P---------PELGGLESLELLYLRRN-KIRFL 221 (565)
T ss_pred -----------------------HHHHHHHHHHhcccchh-hhhcC-C---------hhhcchhhhHHHHhhhc-ccccC
Confidence 11112455555554322 12222 1 22234555555555555 45555
Q ss_pred cccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCC
Q 037222 779 TFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQL 858 (904)
Q Consensus 779 ~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L 858 (904)
|.+..+..|++|++.. ++++.++. .....+++|..|+|.++. +++.|.+..-+.+|+.|++++ ..+
T Consensus 222 Pef~gcs~L~Elh~g~-N~i~~lpa-----------e~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~i 287 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGE-NQIEMLPA-----------EHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDI 287 (565)
T ss_pred CCCCccHHHHHHHhcc-cHHHhhHH-----------HHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC-Ccc
Confidence 5555566666666544 44444433 123355566666665543 555555555555566666655 355
Q ss_pred CCCCCCCCc
Q 037222 859 RRLPLDSNS 867 (904)
Q Consensus 859 ~~lp~~~~~ 867 (904)
..+|.....
T Consensus 288 s~Lp~sLgn 296 (565)
T KOG0472|consen 288 SSLPYSLGN 296 (565)
T ss_pred ccCCccccc
Confidence 555554433
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=2.3e-14 Score=170.49 Aligned_cols=317 Identities=21% Similarity=0.289 Sum_probs=201.6
Q ss_pred CcccCcccccccceeEEEeeccc--cccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccccc
Q 037222 506 GLEQAPAVRESENVTRLSLMQNQ--IKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQL 581 (904)
Q Consensus 506 ~~~~~~~~~~~~~~r~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~l 581 (904)
....++......+++.|-+..|. +..++. +..++.|++|++++|..+..+|.+ ++++-+||||+++++ .++ .+
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~-~L 610 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GIS-HL 610 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Ccc-cc
Confidence 33333333333468888888875 455544 678999999999988888899987 899999999999999 999 99
Q ss_pred CccccccccCcEeecccC-cccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCcc
Q 037222 582 PLGMSKLGSLELFDISRT-EIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSV 660 (904)
Q Consensus 582 p~~i~~L~~L~~L~l~~~-~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 660 (904)
|.++++|+.|.||++..+ ....+|.....|.+||+|.+.... .......++.+.+|++|....+....
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s--------- 679 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS--------- 679 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch---------
Confidence 999999999999999998 445556666779999999997663 11111124444455554443332221
Q ss_pred ccCCCccchHhhcCCCCCcEEEEEec-chhhHHHhhhcccccccceeeEecccCCCcchhhh-h--hhc-ccCccCceee
Q 037222 661 LFGGGEVLVQELLGLKYLEVLELTLG-SYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDA-A--AFA-DLNHLNELYI 735 (904)
Q Consensus 661 ~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~--~l~-~~~~L~~L~l 735 (904)
...+..+..++.|..+..... ..............+.+|+.|.+.+|......... . ... .+++|..+.+
T Consensus 680 -----~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 680 -----VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred -----hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 112233333444432221111 00111122222233468899999988754322110 0 111 1457778888
Q ss_pred cccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcc-cccCCCccEEeEecCccchhhcccCcccCCcccc
Q 037222 736 YEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF-LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMM 814 (904)
Q Consensus 736 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~ 814 (904)
.+|...+ .+.|.. ..++|+.|.+..|+.++++.+ ...+..+..+.+..+ .+.... ..
T Consensus 755 ~~~~~~r--~l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~----------~~ 812 (889)
T KOG4658|consen 755 LNCHMLR--DLTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR----------ML 812 (889)
T ss_pred hcccccc--ccchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce----------ee
Confidence 8888877 455553 679999999999988887654 555666665444332 222220 00
Q ss_pred CCCCCCCcccEeecccccccccccCCC----CCCCCcceEeeccC-CCCCCCCCC
Q 037222 815 GHISPFENLQSLHLSYLPILRSIYWKP----LPFTHLKKMEVRRC-DQLRRLPLD 864 (904)
Q Consensus 815 ~~~~~~~~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~i~~C-~~L~~lp~~ 864 (904)
...+.||++..+.+.+.. +..+.... ..+|.+.++.+.+| +++..+|.+
T Consensus 813 ~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ecCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 134556666666665543 55555544 56888999999997 999999986
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=9.1e-12 Score=155.87 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=180.6
Q ss_pred ccccchHHHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHh
Q 037222 158 RTVVGLQSQLEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQDDIGKKI 235 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l 235 (904)
..+|-|+.-.++ |.. ...+++.|.|++|.||||++.++.... . .++|+++.. +.++..+...++..+
T Consensus 14 ~~~~~R~rl~~~----l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERLLAK----LSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHHHHH----HhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 456777654444 333 357899999999999999999988643 1 589999964 456677777777777
Q ss_pred CCCCCC-----------CCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc--ccc-cccCCCCCCCCCCcEEEEEecc
Q 037222 236 GLSDDS-----------WKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV--DLT-KVGVPLPGPQNTTSKVVFATRF 299 (904)
Q Consensus 236 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~--~~~-~~~~~l~~~~~~gs~IivTtR~ 299 (904)
+..... ....+.......+...+. +.+++|||||+.... ... .+...+. ....+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeCC
Confidence 421110 011233344444544443 679999999996432 222 2222233 33456789999997
Q ss_pred hhhh---ccccCCceeecc----cCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCH
Q 037222 300 IDVC---GSMEADRKFLVA----CLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTA 372 (904)
Q Consensus 300 ~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~ 372 (904)
..-. ..........+. +|+.+|+.++|....+..- -.+...+|++.|+|+|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 4211 111112344555 9999999999987765421 13456789999999999999988777543210
Q ss_pred HHHHHHHHHHhhchhccCCc-hhhhHhhHhh-cccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhc
Q 037222 373 EEWIHAVEVLRRSAFEFAGL-GKEVYPLLKF-SYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFS 450 (904)
Q Consensus 373 ~~w~~~~~~l~~~~~~~~~~-~~~v~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 450 (904)
. ......+ .+. ...+...+.- .++.||+ ..+..++..|+++ . ++.+ +.. .+..
T Consensus 236 ~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~--~~~~-l~~-----~l~~------ 290 (903)
T PRK04841 236 L--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-S--MNDA-LIV-----RVTG------ 290 (903)
T ss_pred h--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-c--CCHH-HHH-----HHcC------
Confidence 0 0000111 110 1234444333 3789999 8999999999987 2 2322 221 1111
Q ss_pred HHHHHHHHHHHHHHhccccc-c--cCCeeehhhHHHHHHHHHH
Q 037222 451 AENQGYYIVGTLIHACLLEG-I--EDDRVKMHDVVRDMALWIA 490 (904)
Q Consensus 451 ~~~~~~~~~~~L~~~~ll~~-~--~~~~~~mHdlv~d~a~~i~ 490 (904)
.+.+...+++|.+.+++.. . +...|+.|++++++.+...
T Consensus 291 -~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2334678999999999753 2 3358999999999998765
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=2.4e-14 Score=161.03 Aligned_cols=296 Identities=21% Similarity=0.232 Sum_probs=195.4
Q ss_pred ceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 518 NVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
.+++|....|.+..+..-..-.+|++++++ .+.+..+| +.++.+.+|..|+..++ .++ .+|..+....+|++|++.
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis-~n~l~~lp-~wi~~~~nle~l~~n~N-~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDIS-HNNLSNLP-EWIGACANLEALNANHN-RLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecc-hhhhhcch-HHHHhcccceEecccch-hHH-hhHHHHhhhhhHHHHHhh
Confidence 567777777766655444566788888888 56677888 67888888888888888 888 888888888888888888
Q ss_pred cCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCC-CceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 598 RTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSG-LRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 598 ~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
.|.++.+|.....+.+|++|+|..| .+..+|..++..+.. |+.|+.+.+....... .+.. ...
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~---------~~e~------~~~ 359 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS---------YEEN------NHA 359 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcccccccc---------ccch------hhH
Confidence 8888888888888888888888888 788888765555443 6666665554432110 0111 112
Q ss_pred CCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccccccc
Q 037222 677 YLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRR 756 (904)
Q Consensus 677 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 756 (904)
.|+.|.+..|..+. ..++. ...+.+|+.|+|+++.-..... ..+.++..|++|+++||. ++.+ ++..
T Consensus 360 ~Lq~LylanN~Ltd-~c~p~-l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSGNk-L~~L-p~tv------- 426 (1081)
T KOG0618|consen 360 ALQELYLANNHLTD-SCFPV-LVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSGNK-LTTL-PDTV------- 426 (1081)
T ss_pred HHHHHHHhcCcccc-cchhh-hccccceeeeeecccccccCCH--HHHhchHHhHHHhcccch-hhhh-hHHH-------
Confidence 23333333332211 01111 1123688888888874332222 567888999999999984 4443 3332
Q ss_pred CCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccc
Q 037222 757 EPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRS 836 (904)
Q Consensus 757 ~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 836 (904)
..++.|++|...+| .+..+|.+.+++.|+.++|+. +.++.+...+ .. .-|+|++|+|++++.+.
T Consensus 427 --a~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~----------~~-p~p~LkyLdlSGN~~l~- 490 (1081)
T KOG0618|consen 427 --ANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTLPE----------AL-PSPNLKYLDLSGNTRLV- 490 (1081)
T ss_pred --HhhhhhHHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhhhh----------hC-CCcccceeeccCCcccc-
Confidence 47889999988887 677788999999999999964 6676663311 11 12899999999987522
Q ss_pred ccCCCCCCCCcceEeeccCCCCCCCCCCC
Q 037222 837 IYWKPLPFTHLKKMEVRRCDQLRRLPLDS 865 (904)
Q Consensus 837 i~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 865 (904)
.....|+.|+.+...+- .+...|.+.
T Consensus 491 --~d~~~l~~l~~l~~~~i-~~~~~~d~~ 516 (1081)
T KOG0618|consen 491 --FDHKTLKVLKSLSQMDI-TLNNTPDGN 516 (1081)
T ss_pred --cchhhhHHhhhhhheec-ccCCCCccc
Confidence 23344555665554442 333444443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-14 Score=131.23 Aligned_cols=157 Identities=22% Similarity=0.405 Sum_probs=117.1
Q ss_pred CcccccccceeEEEeeccccccccC-CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcccccc
Q 037222 510 APAVRESENVTRLSLMQNQIKILSE-VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKL 588 (904)
Q Consensus 510 ~~~~~~~~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L 588 (904)
++.......+.++.++.|.+..+|+ ...+.+|++|+++ ++.++.+|.+ +++++.||.|++.-+ .+. .+|..+|.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmn-rl~-~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMN-RLN-ILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchh-hhh-cCccccCCC
Confidence 3444455677788888887777544 5778888888888 7778888877 778888888888877 777 788888888
Q ss_pred ccCcEeecccCccc--ccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCc
Q 037222 589 GSLELFDISRTEIQ--ELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGE 666 (904)
Q Consensus 589 ~~L~~L~l~~~~i~--~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 666 (904)
+-|+.|||.+|++. .||..+..+.-|+.|++++| .++-+|.+ +++|++||.|.+.+|....
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~--------------- 164 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS--------------- 164 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh---------------
Confidence 88888888887664 57888888888888888887 66778876 7888888888887765442
Q ss_pred cchHhhcCCCCCcEEEEEecch
Q 037222 667 VLVQELLGLKYLEVLELTLGSY 688 (904)
Q Consensus 667 ~~~~~l~~L~~L~~L~l~~~~~ 688 (904)
...+++.|++|+.|.|..+..
T Consensus 165 -lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 165 -LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred -CcHHHHHHHHHHHHhccccee
Confidence 445667777777777765543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=3.4e-12 Score=148.86 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=186.3
Q ss_pred eeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeeccc
Q 037222 519 VTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISR 598 (904)
Q Consensus 519 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~ 598 (904)
-..|.++.+.+..+|... .++|+.|++. ++.++.+|.. +++|++|++++| .++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~-~N~Lt~LP~l----p~~Lk~LdLs~N-~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIP-DNNLTSLPAL----PPELRTLEVSGN-QLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEcc-CCcCCCCCCC----CCCCcEEEecCC-ccC-cccCc---ccccceeeccC
Confidence 346778888888776632 3589999999 6778888863 689999999999 999 88854 46889999999
Q ss_pred CcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCC
Q 037222 599 TEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYL 678 (904)
Q Consensus 599 ~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 678 (904)
|.+..+|... .+|+.|++++| .++.+|. .+++|+.|++++|.+..+.. + ..+|
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~-----------------l--p~~L 324 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASLPA-----------------L--PSEL 324 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCC-ccccccc----cccccceeECCCCccccCCC-----------------C--cccc
Confidence 9999988643 57889999999 7888886 24789999999987763210 1 1346
Q ss_pred cEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCC
Q 037222 679 EVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREP 758 (904)
Q Consensus 679 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 758 (904)
+.|.+..|....++. +..+|+.|+|+++.-. .++ . ..++|+.|++++|. +..+ +
T Consensus 325 ~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls-~LP---~--lp~~L~~L~Ls~N~-L~~L-P------------ 378 (788)
T PRK15387 325 CKLWAYNNQLTSLPT------LPSGLQELSVSDNQLA-SLP---T--LPSELYKLWAYNNR-LTSL-P------------ 378 (788)
T ss_pred cccccccCccccccc------cccccceEecCCCccC-CCC---C--CCcccceehhhccc-cccC-c------------
Confidence 667776655544332 2358999999987433 222 1 23678888888764 3322 1
Q ss_pred cccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccccc
Q 037222 759 FVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIY 838 (904)
Q Consensus 759 ~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 838 (904)
..+++|+.|++++| .+..+|.. .++|+.|++++|. ++.++. .+.+|+.|+++++. ++.+|
T Consensus 379 ~l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~Nq-Lt~LP 438 (788)
T PRK15387 379 ALPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRNQ-LTRLP 438 (788)
T ss_pred ccccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhccCc-ccccC
Confidence 12467999999998 56666653 4789999999964 555532 23578999999875 88888
Q ss_pred CCCCCCCCcceEeeccCCCCCC
Q 037222 839 WKPLPFTHLKKMEVRRCDQLRR 860 (904)
Q Consensus 839 ~~~~~~~~L~~L~i~~C~~L~~ 860 (904)
.....+++|+.|+++++ +|..
T Consensus 439 ~sl~~L~~L~~LdLs~N-~Ls~ 459 (788)
T PRK15387 439 ESLIHLSSETTVNLEGN-PLSE 459 (788)
T ss_pred hHHhhccCCCeEECCCC-CCCc
Confidence 77778999999999986 4553
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=6.3e-12 Score=147.65 Aligned_cols=96 Identities=27% Similarity=0.495 Sum_probs=44.6
Q ss_pred CceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcEeec
Q 037222 540 DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNL 619 (904)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l 619 (904)
+|+.|+++ ++.+..+|..++ .+|++|++++| .++ .+|..+. .+|+.|++++|.+..+|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls-~N~LtsLP~~l~---~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILD-NNELKSLPENLQ---GNIKTLYANSN-QLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEec-CCCCCcCChhhc---cCCCEEECCCC-ccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 45555555 334444444322 24555555555 454 4444332 245555555555555554443 34555555
Q ss_pred cccccccccchhhhcCCCCCceeeecccCC
Q 037222 620 RWTSKLIRIPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 620 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
++| .++.+|.. +. ++|+.|++++|.+
T Consensus 270 s~N-~L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 270 FHN-KISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred cCC-ccCccccc-cC--CCCcEEECCCCcc
Confidence 544 44444443 21 3455555554443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.9e-12 Score=150.48 Aligned_cols=133 Identities=25% Similarity=0.376 Sum_probs=105.3
Q ss_pred EcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccccc
Q 037222 502 CAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQL 581 (904)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~l 581 (904)
..+..+..+|.. -+..++.|.+.+|.+..+|.. .+++|++|+++ ++.+..+|..+. .+|+.|+|++| .++ .+
T Consensus 185 L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls-~N~LtsLP~~l~---~~L~~L~Ls~N-~L~-~L 256 (754)
T PRK15370 185 LKILGLTTIPAC-IPEQITTLILDNNELKSLPEN-LQGNIKTLYAN-SNQLTSIPATLP---DTIQEMELSIN-RIT-EL 256 (754)
T ss_pred eCCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-hccCCCEEECC-CCccccCChhhh---ccccEEECcCC-ccC-cC
Confidence 345566666642 245789999999999888753 34689999999 666888887643 47999999999 999 89
Q ss_pred CccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 582 PLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 582 p~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
|..+. .+|++|++++|++..+|..+. .+|++|++++| .++.+|.. +. ++|++|++.+|.+.
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc
Confidence 98765 589999999999999998765 58999999999 78888875 32 47888999887665
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=6.9e-10 Score=124.54 Aligned_cols=294 Identities=15% Similarity=0.116 Sum_probs=169.7
Q ss_pred cccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
++.++||++++++|...+.+ .....+.|+|++|+|||++++.+++.. ......-..++|.+....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46789999999999998854 244568899999999999999999987 3222223467777777778889999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc------ccccccCCCCCCCCCCcE--EEEEecchhh
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV------DLTKVGVPLPGPQNTTSK--VVFATRFIDV 302 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~--IivTtR~~~v 302 (904)
+++..........+.++....+.+.+. +++.+||||+++.-. .+..+...+. ...+++ ||.++....+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--ccCCCeEEEEEEECCcch
Confidence 998652211123356667777777774 456899999997532 1223322221 112333 5666665443
Q ss_pred hcccc-------CCceeecccCCHHHHHHHHHHhhCcc---ccCCCccHHHHHHHHHHHhCCchhHHHHHHHHH--h--c
Q 037222 303 CGSME-------ADRKFLVACLSEKDAWELFREKVGEE---TLQSHHDIVELAQIVAKECGGLPLALITIGRAM--A--C 368 (904)
Q Consensus 303 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~--~ 368 (904)
..... ....+.+.+++.++..+++...+... ..-.+..++.+++......|..+.|+..+-.+. + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 13467999999999999998876321 111222233344444444566777877764432 1 1
Q ss_pred C---CCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhc-CCCC-CcccchHHHHHH--HHhcC
Q 037222 369 K---RTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCC-LYPE-DYGILKWDLIDC--WIGEG 441 (904)
Q Consensus 369 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--w~a~g 441 (904)
. -+.+....+.+.+.. ....-.+..||. +-|..+..++ .... ...+....+... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 145556555544311 222345778988 4333332222 1111 123444444432 22221
Q ss_pred CccCcchhcHHHHHHHHHHHHHHhccccc
Q 037222 442 FLEESDRFSAENQGYYIVGTLIHACLLEG 470 (904)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 470 (904)
+-.. .........|+++|...++++.
T Consensus 332 ~~~~---~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGYE---PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCCC---cCcHHHHHHHHHHHHhcCCeEE
Confidence 1100 0012334557888888888764
No 23
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.31 E-value=1.3e-10 Score=131.37 Aligned_cols=292 Identities=16% Similarity=0.155 Sum_probs=192.9
Q ss_pred cccchHHHHHHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhC
Q 037222 159 TVVGLQSQLEQVWRCLVEE-SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIG 236 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~ 236 (904)
..|-|. ++++.|... +.+.+.|..++|.|||||+.++.... ..-..+.|.++++. .++..+...++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 345554 455556554 78999999999999999999998743 33456899998776 468888888888886
Q ss_pred CCCCC-----------CCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc--cc-ccccCCCCCCCCCCcEEEEEecch
Q 037222 237 LSDDS-----------WKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV--DL-TKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 237 ~~~~~-----------~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~--~~-~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
...+. ....+...+.+.+...+. .++.++||||..-.. .. ..+...+. ....+-..|||||+.
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~-~~P~~l~lvv~SR~r 170 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK-HAPENLTLVVTSRSR 170 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH-hCCCCeEEEEEeccC
Confidence 33211 123345556666666664 368999999986432 22 22222222 445678999999976
Q ss_pred hh---hccccCCceeecc----cCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHH
Q 037222 301 DV---CGSMEADRKFLVA----CLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAE 373 (904)
Q Consensus 301 ~v---~~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 373 (904)
.- +...-....+++. .++.+|+-++|....+.. --+...+.+.+..+|.+-|+..++=.++.+.+.+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 43 2222223344443 488999999998875432 1245578899999999999999988777444433
Q ss_pred HHHHHHHHHhhchhccCCchhhhHhh-HhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHH
Q 037222 374 EWIHAVEVLRRSAFEFAGLGKEVYPL-LKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAE 452 (904)
Q Consensus 374 ~w~~~~~~l~~~~~~~~~~~~~v~~~-l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 452 (904)
.--..++ +.++.+..- ..--++.||+ .+|..++-||+++.= -+.|+. .-+.+
T Consensus 245 q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~------------~Ltg~ 297 (894)
T COG2909 245 QSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCN------------ALTGE 297 (894)
T ss_pred HHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHH------------HHhcC
Confidence 3222111 111122221 2224678999 899999999997531 122222 22335
Q ss_pred HHHHHHHHHHHHhcccccc---cCCeeehhhHHHHHHHHHHhh
Q 037222 453 NQGYYIVGTLIHACLLEGI---EDDRVKMHDVVRDMALWIACE 492 (904)
Q Consensus 453 ~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~i~~~ 492 (904)
+.+...+++|.+++|+-.. ....|+.|.++.||-+.-..+
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 6778889999999998754 578999999999998865543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=3.6e-13 Score=137.80 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=36.3
Q ss_pred hhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc--ccccCCCccEEeEecC
Q 037222 723 AFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT--FLVFAPNLKSLELLQC 795 (904)
Q Consensus 723 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c 795 (904)
.+..+++|++|++++|.. +.+...|+. ....++.|.|..| ++..+. .+..+.+|+.|+|.++
T Consensus 269 cf~~L~~L~~lnlsnN~i-~~i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKI-TRIEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred HHhhcccceEeccCCCcc-chhhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC
Confidence 466777777777776643 333344443 4556666666666 444443 2556666666666663
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=2.1e-13 Score=123.36 Aligned_cols=138 Identities=22% Similarity=0.365 Sum_probs=113.8
Q ss_pred cccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhh
Q 037222 529 IKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEEL 608 (904)
Q Consensus 529 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~ 608 (904)
+.+++....+++++.|.++ .+.+..+|+. +..+.+|++|+++++ .|+ ++|.+|+.|+.|+.|++..|.+..+|.++
T Consensus 23 f~~~~gLf~~s~ITrLtLS-HNKl~~vppn-ia~l~nlevln~~nn-qie-~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLS-HNKLTVVPPN-IAELKNLEVLNLSNN-QIE-ELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred Hhhcccccchhhhhhhhcc-cCceeecCCc-HHHhhhhhhhhcccc-hhh-hcChhhhhchhhhheecchhhhhcCcccc
Confidence 3445666778888999999 6678889988 788999999999999 999 99999999999999999999999999999
Q ss_pred hcCCCCcEeecccccccc--ccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEec
Q 037222 609 KLLVNLKCLNLRWTSKLI--RIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLG 686 (904)
Q Consensus 609 ~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 686 (904)
+.++-|+.||+.+| ++. .+|.. |-.|+.|+-|++.+|.+.- ...+++.|++|+.|.+..+
T Consensus 99 gs~p~levldltyn-nl~e~~lpgn-ff~m~tlralyl~dndfe~----------------lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENSLPGN-FFYMTTLRALYLGDNDFEI----------------LPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CCCchhhhhhcccc-ccccccCCcc-hhHHHHHHHHHhcCCCccc----------------CChhhhhhcceeEEeeccC
Confidence 99999999999888 443 46766 6678899999998875542 3455778888888877655
Q ss_pred ch
Q 037222 687 SY 688 (904)
Q Consensus 687 ~~ 688 (904)
+.
T Consensus 161 dl 162 (264)
T KOG0617|consen 161 DL 162 (264)
T ss_pred ch
Confidence 43
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=3.9e-09 Score=111.77 Aligned_cols=182 Identities=12% Similarity=0.154 Sum_probs=115.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
...+++.|+|++|+||||+++.+++.. .. ..+ ...|+ +....+..+++..|...++.+.. ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 345689999999999999999999887 21 111 22333 33345778899999999877542 2233333333333
Q ss_pred H-----HcCCcEEEEecccccc--cccccccCCC--CCCCCCCcEEEEEecchhhhcccc----------CCceeecccC
Q 037222 257 S-----LGEKRFVLLLDDLWER--VDLTKVGVPL--PGPQNTTSKVVFATRFIDVCGSME----------ADRKFLVACL 317 (904)
Q Consensus 257 ~-----l~~~r~LlVlDdv~~~--~~~~~~~~~l--~~~~~~gs~IivTtR~~~v~~~~~----------~~~~~~l~~L 317 (904)
. ..+++.++|+||+|.. ..++.+.... .........|++|.... ....+. ....++++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 2678899999999864 2344443221 10222233556665532 211111 1346789999
Q ss_pred CHHHHHHHHHHhhCccccCCC-ccHHHHHHHHHHHhCCchhHHHHHHHHH
Q 037222 318 SEKDAWELFREKVGEETLQSH-HDIVELAQIVAKECGGLPLALITIGRAM 366 (904)
Q Consensus 318 ~~~e~~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (904)
+.+|..+++...+........ .-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999887643221111 1235778999999999999999988765
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=1.2e-08 Score=113.17 Aligned_cols=296 Identities=13% Similarity=0.113 Sum_probs=169.1
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC---CEEEEEEecCCCCHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF---DCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~~ 230 (904)
..++||+.++++|..++.+ .....+.|+|++|+|||++++.+++...+..... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5689999999999999864 3456789999999999999999998752111111 24577887777778889999
Q ss_pred HHHHhC---CCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc-c----cccccCC--CCCCCCCCcEEEEEec
Q 037222 231 IGKKIG---LSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV-D----LTKVGVP--LPGPQNTTSKVVFATR 298 (904)
Q Consensus 231 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-~----~~~~~~~--l~~~~~~gs~IivTtR 298 (904)
|++++. .... ....+..+....+.+.+. +++++||||+++.-. . +..+... .....+....+|++|.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 2211 122344556666666663 568899999997541 1 2222211 1101112334455554
Q ss_pred chhhhcccc-------CCceeecccCCHHHHHHHHHHhhCc--cccCCCccHHHHHHHHHHHhCCchhHH-HHHHHHH--
Q 037222 299 FIDVCGSME-------ADRKFLVACLSEKDAWELFREKVGE--ETLQSHHDIVELAQIVAKECGGLPLAL-ITIGRAM-- 366 (904)
Q Consensus 299 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~~~~l-- 366 (904)
.......+. ....+.+++++.++..+++..++.. .....+++..+...+++....|.|-.+ ..+-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211111 1246899999999999999988741 111223333345556777777887443 3322211
Q ss_pred h--cC---CCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCC--CCCcccchHHHHHHH--
Q 037222 367 A--CK---RTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLY--PEDYGILKWDLIDCW-- 437 (904)
Q Consensus 367 ~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w-- 437 (904)
+ .+ -+.+..+.+.+.+.. ....-++..||. +.|..+..++.. ..+..+...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 11 244444444443321 222345668887 555444333211 133445555555533
Q ss_pred HhcCCccCcchhcHHHHHHHHHHHHHHhcccccc
Q 037222 438 IGEGFLEESDRFSAENQGYYIVGTLIHACLLEGI 471 (904)
Q Consensus 438 ~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 471 (904)
+++.+ .. ..........++.+|...|++...
T Consensus 320 ~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 12211 11 112345667778888888888753
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=5.7e-11 Score=123.10 Aligned_cols=196 Identities=17% Similarity=0.191 Sum_probs=104.0
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH--------
Q 037222 160 VVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI-------- 231 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i-------- 231 (904)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. . ...+ ..+|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 68999999999999988778899999999999999999999986 2 1122 3445544444322 222222
Q ss_pred --HHHhC--CCCCC------CCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc-cc-------ccccCCCCC-CCCCC
Q 037222 232 --GKKIG--LSDDS------WKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV-DL-------TKVGVPLPG-PQNTT 290 (904)
Q Consensus 232 --~~~l~--~~~~~------~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-~~-------~~~~~~l~~-~~~~g 290 (904)
.+.+. ..... ............+.+.+. +++.+||+||+.... .. ..+...+.. .....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 11121 11000 011122333344444443 456999999996544 11 112111110 12233
Q ss_pred cEEEEEecchhhhcc--------ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 291 SKVVFATRFIDVCGS--------MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 291 s~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
..+|+++....+... .+....+.+++|+.+++++++...+... ... +.-++..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555555444322 2333459999999999999999976443 122 22345568999999999988764
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=3.6e-11 Score=131.10 Aligned_cols=217 Identities=18% Similarity=0.086 Sum_probs=99.0
Q ss_pred hcCCCcccEEEeecCCCccc----ccCccccccccCcEeecccCcccc-------cchhhhcCCCCcEeecccccccccc
Q 037222 560 FQFMPSLKVLKISNCGNFTF----QLPLGMSKLGSLELFDISRTEIQE-------LPEELKLLVNLKCLNLRWTSKLIRI 628 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~~~i~~----~lp~~i~~L~~L~~L~l~~~~i~~-------Lp~~~~~L~~L~~L~l~~~~~l~~l 628 (904)
|..+.+|++|+++++ .++. .++..+...++|++|+++++.+.. ++..+..+++|+.|++++|......
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 455555666666666 5421 234444555556666666654432 2334555666666666666222222
Q ss_pred chhhhcCCCC---CceeeecccCCcccccCCCCccccCCCccchHhhcCC-CCCcEEEEEecchh--hHHHhhhcccccc
Q 037222 629 PRQLISNSSG---LRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGL-KYLEVLELTLGSYQ--ALQIFLSSNKLKS 702 (904)
Q Consensus 629 p~~~i~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~--~~~~l~~~~~~~~ 702 (904)
+. .+..+.+ |++|++.+|...... .......+..+ ++|+.|++..+... ....+......++
T Consensus 98 ~~-~~~~l~~~~~L~~L~ls~~~~~~~~-----------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 98 CG-VLESLLRSSSLQELKLNNNGLGDRG-----------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred HH-HHHHHhccCcccEEEeeCCccchHH-----------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 22 2434433 666666665443100 01112234444 55666666544432 1111111111223
Q ss_pred cceeeEecccCCCcc--hhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcC--
Q 037222 703 CIRSLFLQLAGDTKS--IIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDV-- 778 (904)
Q Consensus 703 ~L~~L~L~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-- 778 (904)
+|+.|++++|.-... ..+...+..+++|++|++++|.... ..+..+. .....+++|+.|++++|. +.+.
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~-----~~~~~~~~L~~L~ls~n~-l~~~~~ 238 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD-EGASALA-----ETLASLKSLEVLNLGDNN-LTDAGA 238 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh-HHHHHHH-----HHhcccCCCCEEecCCCc-CchHHH
Confidence 566666665532211 0111233444577777776664221 1111110 011245667777777763 3321
Q ss_pred cccc-----cCCCccEEeEecCc
Q 037222 779 TFLV-----FAPNLKSLELLQCD 796 (904)
Q Consensus 779 ~~l~-----~l~~L~~L~L~~c~ 796 (904)
..+. ..++|++|++++|.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCC
Confidence 1111 13677777777654
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=4.4e-11 Score=122.74 Aligned_cols=144 Identities=26% Similarity=0.340 Sum_probs=104.3
Q ss_pred EEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc
Q 037222 501 VCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT 578 (904)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~ 578 (904)
...+.++.++|. .-+.....|.+..|.|..+|+ +..+++||.|+++ +|.+..|.++.|++++.|-.|-+.++..|+
T Consensus 52 dCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344556666664 234466677788888887766 4778888888888 666778877778888877777665522788
Q ss_pred cccCcc-ccccccCcEeecccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccC
Q 037222 579 FQLPLG-MSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATG 648 (904)
Q Consensus 579 ~~lp~~-i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 648 (904)
.+|.. ++.|..|+-|.+..|.+..++. .+..|++|..|.+..| .++.++.+.+..+.+++++++..|.
T Consensus 130 -~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred -hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 77754 6778888888888877776654 4677888888888877 6777887667788888888777665
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=7e-11 Score=128.84 Aligned_cols=245 Identities=20% Similarity=0.122 Sum_probs=122.2
Q ss_pred hcCCCcccEEEeecCCCcc------cccCccccccccCcEeecccCccc-ccchhhhcCCC---CcEeeccccccccc--
Q 037222 560 FQFMPSLKVLKISNCGNFT------FQLPLGMSKLGSLELFDISRTEIQ-ELPEELKLLVN---LKCLNLRWTSKLIR-- 627 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~~~i~------~~lp~~i~~L~~L~~L~l~~~~i~-~Lp~~~~~L~~---L~~L~l~~~~~l~~-- 627 (904)
+...+.|+.|+++++ .+. ..++..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++| .+..
T Consensus 47 l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~ 124 (319)
T cd00116 47 LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRG 124 (319)
T ss_pred HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHH
Confidence 445555666666665 333 122334455666666666666554 23333433333 666666666 3331
Q ss_pred ---cchhhhcCC-CCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhh--HHHhhhccccc
Q 037222 628 ---IPRQLISNS-SGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQA--LQIFLSSNKLK 701 (904)
Q Consensus 628 ---lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~l~~~~~~~ 701 (904)
+... +..+ ++|+.|++.+|.+.... .......+..+++|+.|++..+.... +..+.......
T Consensus 125 ~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 125 LRLLAKG-LKDLPPALEKLVLGRNRLEGAS-----------CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred HHHHHHH-HHhCCCCceEEEcCCCcCCchH-----------HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence 1111 3444 66666666666554200 01123334555666666665544321 11111111112
Q ss_pred ccceeeEecccCCCcc--hhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCc--
Q 037222 702 SCIRSLFLQLAGDTKS--IIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD-- 777 (904)
Q Consensus 702 ~~L~~L~L~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-- 777 (904)
++|+.|++++|..... ..+...+..+++|++|++++|.... ..+..+.. ... ...++|++|++++|. +++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~--~~~--~~~~~L~~L~l~~n~-i~~~~ 266 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALAS--ALL--SPNISLLTLSLSCND-ITDDG 266 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHH--HHh--ccCCCceEEEccCCC-CCcHH
Confidence 4777777777643211 1122356677889999998875322 11111110 000 124789999999984 331
Q ss_pred ---C-cccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCC-CcccEeeccccc
Q 037222 778 ---V-TFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPF-ENLQSLHLSYLP 832 (904)
Q Consensus 778 ---l-~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~ 832 (904)
+ ..+..+++|++|++++|..-..-.. ........+ +.|+.|++.+.+
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQ--------LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCcHHHHH--------HHHHHHhhcCCchhhcccCCCC
Confidence 1 1245668899999988654332100 000123344 567777776543
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=2.8e-08 Score=107.27 Aligned_cols=273 Identities=16% Similarity=0.107 Sum_probs=150.8
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
..|+|++..++++..++.. .....+.++|++|+|||+||+.+++.. . ..+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchh-HHHHH
Confidence 4689999999999888863 345568899999999999999999886 2 222 1222111111222 22223
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhccc-c
Q 037222 233 KKIGLSD----DSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGSM-E 307 (904)
Q Consensus 233 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~-~ 307 (904)
..++... +.....+ ....+.+...+.+.+..+|+++..+...+.. .++ +.+-|..||+...+.... .
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~----~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP----PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC----CeEEEEecCCccccCHHHHh
Confidence 3332211 0001111 1233456666667777777777655444421 222 245566677765443221 1
Q ss_pred -CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhch
Q 037222 308 -ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVLRRSA 386 (904)
Q Consensus 308 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 386 (904)
-...+++++++.++..+++.+.+....... -.+....|++.|+|.|-.+..++..+ |..+. ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 134679999999999999998886433222 24566789999999997665554332 11100 000000
Q ss_pred hccCCchhhhHhhHhhcccCCCchhhhHHHh-HhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHH-HHHH
Q 037222 387 FEFAGLGKEVYPLLKFSYDSLQNETIRSCFL-YCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG-TLIH 464 (904)
Q Consensus 387 ~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~ 464 (904)
... ..-......+...|..+++ +-+..+. ..+.++.+ .+..+.+.... | .....++..++ .|++
T Consensus 217 it~-~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 INR-DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cCH-HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 000 0001223335667888888 5555554 44656433 34433333222 1 12234555677 6999
Q ss_pred hcccccc
Q 037222 465 ACLLEGI 471 (904)
Q Consensus 465 ~~ll~~~ 471 (904)
++|++..
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999754
No 33
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=4.2e-09 Score=102.55 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEecCCCCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLE---KIQDDIGKKIGLSDDSWKNKSFEEKAV 252 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 252 (904)
+++.|+|.+|+||||+++.++... ..... +...+|+......... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 578999999999999999999887 33332 4566777766544322 34444444332211 11111
Q ss_pred HHHHH-HcCCcEEEEecccccccc---------ccc-ccCCCCCCCCCCcEEEEEecchhh---hccccCCceeecccCC
Q 037222 253 DILRS-LGEKRFVLLLDDLWERVD---------LTK-VGVPLPGPQNTTSKVVFATRFIDV---CGSMEADRKFLVACLS 318 (904)
Q Consensus 253 ~l~~~-l~~~r~LlVlDdv~~~~~---------~~~-~~~~l~~~~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~ 318 (904)
.+... -+.+++++|+|++++... +.. +...++.....+.+|+||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12222 267899999999975322 222 222233123568999999998766 3334445689999999
Q ss_pred HHHHHHHHHHhhC
Q 037222 319 EKDAWELFREKVG 331 (904)
Q Consensus 319 ~~e~~~Lf~~~~~ 331 (904)
+++..+++.+.+.
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.95 E-value=6.5e-11 Score=122.61 Aligned_cols=294 Identities=15% Similarity=0.124 Sum_probs=175.3
Q ss_pred CCceEEEeecCccccccc-chhhcCCCcccEEEeecCCCcccccCccc-cccccCcEeecccC-ccccc--chhhhcCCC
Q 037222 539 PDLLTLFLDFNEELEMIA-DGFFQFMPSLKVLKISNCGNFTFQLPLGM-SKLGSLELFDISRT-EIQEL--PEELKLLVN 613 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i-~~L~~L~~L~l~~~-~i~~L--p~~~~~L~~ 613 (904)
..|+.|.+.++.....-+ ..+...++++..|.+.+|..+++..-.++ ..+.+|++|++..| .|+.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 568888888766544333 23456899999999999976663333333 36788999999886 55533 223456899
Q ss_pred CcEeeccccccccc--cchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhh-cCCCCCcEEEEEecchhh
Q 037222 614 LKCLNLRWTSKLIR--IPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQEL-LGLKYLEVLELTLGSYQA 690 (904)
Q Consensus 614 L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~ 690 (904)
|++|++++|..++. +.. ...++.+|+.+...+|.-.. ...+... .....+..+++..+....
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~--------------le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELE--------------LEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccccc--------------HHHHHHHhccChHhhccchhhhcccc
Confidence 99999999976654 111 13456666666666553221 1111111 111112222211111111
Q ss_pred HHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEe
Q 037222 691 LQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIF 770 (904)
Q Consensus 691 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 770 (904)
...+......+..|+.|..++|.+.+...+...-.++.+|+.|-+.+|..+.+.....++ ...+.|+.+++.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e 354 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLE 354 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhccc
Confidence 112222233346778888888877766666566677788888888888876644333333 467788888888
Q ss_pred ccCCCCcC--cc-cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccC-CCCCCCC
Q 037222 771 SCGKLKDV--TF-LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYW-KPLPFTH 846 (904)
Q Consensus 771 ~c~~l~~l--~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~-~~~~~~~ 846 (904)
+|....+- .. -..++.|+.|.|+.|..+++.... .+.....+...|+.+.|++||.+++-.. ....+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~-------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR-------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh-------hhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 88644332 12 336788888888888777665210 0111334566788888888886554322 2234677
Q ss_pred cceEeeccCCCCCCCC
Q 037222 847 LKKMEVRRCDQLRRLP 862 (904)
Q Consensus 847 L~~L~i~~C~~L~~lp 862 (904)
|+.+++.+|...+.-|
T Consensus 428 Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEA 443 (483)
T ss_pred cceeeeechhhhhhhh
Confidence 8888777776665533
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=2.1e-07 Score=101.00 Aligned_cols=273 Identities=14% Similarity=0.095 Sum_probs=147.9
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
.+|+|++..++.+..++.. .....+.|+|++|+||||||+.+++.. . ..+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 5689999999998877753 345678899999999999999999987 2 221 112211 111122233333
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhccc-c
Q 037222 233 KKIGLSD----DSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGSM-E 307 (904)
Q Consensus 233 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~-~ 307 (904)
..+.... +.....+ ....+.+...+.+.+..+|+|+..+...+. ..++ +.+-|..|||...+.... .
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----CceEEeecCCcccCCHHHHH
Confidence 3332111 0000001 112233445555566666666654332211 1122 234566677754443221 1
Q ss_pred -CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhch
Q 037222 308 -ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVLRRSA 386 (904)
Q Consensus 308 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 386 (904)
-...+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 1356899999999999999998865432222 35678999999999965544443221 121110 0000
Q ss_pred hccCCchhhhHhhHhhcccCCCchhhhHHHh-HhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHH-HHHH
Q 037222 387 FEFAGLGKEVYPLLKFSYDSLQNETIRSCFL-YCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG-TLIH 464 (904)
Q Consensus 387 ~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~ 464 (904)
-. ...-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... . ...+.++..++ .|++
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g-----~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------G-----EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------C-----CCcchHHHHhhHHHHH
Confidence 00 00012344555677888887 4555553 66667655 35544443222 1 11223344455 7888
Q ss_pred hcccccc
Q 037222 465 ACLLEGI 471 (904)
Q Consensus 465 ~~ll~~~ 471 (904)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 8988765
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.6e-07 Score=98.14 Aligned_cols=219 Identities=16% Similarity=0.121 Sum_probs=126.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (904)
.+++|-+..+ ...+..+.+.-..+||++|+||||||+.+.... ...| ..+|...+-.+-++
T Consensus 30 ~HLlg~~~~l---rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr-------- 90 (436)
T COG2256 30 EHLLGEGKPL---RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLR-------- 90 (436)
T ss_pred HhhhCCCchH---HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHH--------
Confidence 4455554443 444556778888899999999999999999876 3444 33333322222222
Q ss_pred CCCCCCCCCHHHHHHHH-HHHHcCCcEEEEeccccc--ccccccccCCCCCCCCCCcEEEE--Eecchhh---hccccCC
Q 037222 238 SDDSWKNKSFEEKAVDI-LRSLGEKRFVLLLDDLWE--RVDLTKVGVPLPGPQNTTSKVVF--ATRFIDV---CGSMEAD 309 (904)
Q Consensus 238 ~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~Iiv--TtR~~~v---~~~~~~~ 309 (904)
...+.- .....|++.+|++|.|+. ..+.+.+. | ...+|.-|+| ||.++.. .......
T Consensus 91 -----------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p-~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 91 -----------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---P-HVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred -----------HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---h-hhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 222222 223358999999999973 34444443 3 3446776766 6666544 3334567
Q ss_pred ceeecccCCHHHHHHHHHHhhCcccc--C-CCccH-HHHHHHHHHHhCCchhHHHH---HHHHHhcCC---CHHHHHHHH
Q 037222 310 RKFLVACLSEKDAWELFREKVGEETL--Q-SHHDI-VELAQIVAKECGGLPLALIT---IGRAMACKR---TAEEWIHAV 379 (904)
Q Consensus 310 ~~~~l~~L~~~e~~~Lf~~~~~~~~~--~-~~~~~-~~~~~~i~~~c~GlPLai~~---~~~~l~~~~---~~~~w~~~~ 379 (904)
.++.+++|+.++-..++.+.+..... . ....+ ++.-..+++.++|---++-. ++..+.... ..+.-++.+
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 89999999999999999995422210 1 11112 34567788999887544322 222222222 233333333
Q ss_pred HHHhhchhccCCchhhhHhhHhhcccCCCch
Q 037222 380 EVLRRSAFEFAGLGKEVYPLLKFSYDSLQNE 410 (904)
Q Consensus 380 ~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~ 410 (904)
..-........+..-++.+++.-|...-+++
T Consensus 236 ~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 236 QRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 2211111111122236888888898888774
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2e-09 Score=103.12 Aligned_cols=122 Identities=26% Similarity=0.348 Sum_probs=32.2
Q ss_pred ceeEEEeeccccccccCCC-CCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccc-cccccCcEee
Q 037222 518 NVTRLSLMQNQIKILSEVP-TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGM-SKLGSLELFD 595 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i-~~L~~L~~L~ 595 (904)
+.+.|++.++.+..+.... .+.+|++|+++ ++.+..++. +..++.|++|++++| .|+ .++..+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~--l~~L~~L~~L~L~~N-~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLS-NNQITKLEG--LPGLPRLKTLDLSNN-RIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ----------------S--TT-TT--EEE-T-TS--S--TT------TT--EEE--SS-----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccchhhhhcCCCEEECC-CCCCccccC--ccChhhhhhcccCCC-CCC-ccccchHHhCCcCCEEE
Confidence 4555666666555554443 34555555555 444555443 455555555555555 555 444333 2455555555
Q ss_pred cccCcccccc--hhhhcCCCCcEeeccccccccccc---hhhhcCCCCCceeeec
Q 037222 596 ISRTEIQELP--EELKLLVNLKCLNLRWTSKLIRIP---RQLISNSSGLRVLRMF 645 (904)
Q Consensus 596 l~~~~i~~Lp--~~~~~L~~L~~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~ 645 (904)
+++|+|..+- ..+..+++|++|++.+|+ +...+ ..++..+++|+.|+-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 5555554432 233445555555555552 22222 1234455555555443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.1e-09 Score=103.00 Aligned_cols=138 Identities=27% Similarity=0.312 Sum_probs=48.0
Q ss_pred cccccccCCCCCCCceEEEeecCcccccccchhhc-CCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccc
Q 037222 527 NQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQ-FMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELP 605 (904)
Q Consensus 527 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp 605 (904)
+.+...+...++.+++.|++. ++.+..+.. ++ .+.+|++|++++| .|+ .++ .+..|++|++|++++|.|+.++
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~-~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLR-GNQISTIEN--LGATLDKLEVLDLSNN-QIT-KLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S---T-T----TT--EEE--SS---S-C
T ss_pred ccccccccccccccccccccc-ccccccccc--hhhhhcCCCEEECCCC-CCc-ccc-CccChhhhhhcccCCCCCCccc
Confidence 344444555666678888888 555655543 44 5778888888888 887 765 5777888888888888888886
Q ss_pred hhh-hcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEE
Q 037222 606 EEL-KLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLEL 683 (904)
Q Consensus 606 ~~~-~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 683 (904)
..+ ..+++|++|++++| .+..+.. ..++.+++|+.|++.+|++... ..+...-+..+++|+.||-
T Consensus 81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------------~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK------------KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------------TTHHHHHHHH-TT-SEETT
T ss_pred cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch------------hhHHHHHHHHcChhheeCC
Confidence 655 36888888888887 5655432 1266788888888888766531 2233344556677777663
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.6e-10 Score=119.86 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=155.5
Q ss_pred ceeEEEeecccccc---ccC-CCCCCCceEEEeecCccccccc-chhhcCCCcccEEEeecCCCcccccCc-cccccccC
Q 037222 518 NVTRLSLMQNQIKI---LSE-VPTCPDLLTLFLDFNEELEMIA-DGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSL 591 (904)
Q Consensus 518 ~~r~l~l~~~~~~~---l~~-~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L 591 (904)
.++.+++.+..-.. +.. ...|++++.|.+.++..+++.. .++-..++.|++|++..|.+++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45566666543222 211 1667777777777666554322 233346777888888776566622222 22356777
Q ss_pred cEeecccC-cccc--cchhhhcCCCCcEeeccccccccccchhhhc----CCCCCceeeecccCCcccccCCCCccccCC
Q 037222 592 ELFDISRT-EIQE--LPEELKLLVNLKCLNLRWTSKLIRIPRQLIS----NSSGLRVLRMFATGYECFHEAPEDSVLFGG 664 (904)
Q Consensus 592 ~~L~l~~~-~i~~--Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 664 (904)
.||++++| .|+. +..-...+.+|+.+-+++|. .++.+.+. .+.-+-.+++..|...
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~l-------------- 281 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQL-------------- 281 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccc--------------
Confidence 78887777 3432 22233455556666666663 33333232 2233444444444222
Q ss_pred CccchHhh-cCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcce
Q 037222 665 GEVLVQEL-LGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEE 743 (904)
Q Consensus 665 ~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 743 (904)
++..+..+ ..+..|+.|..+......-..+........+|+.|.+..|...+.......-.+++.|+.|++..|....+
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 11122222 23455666655433222212222222334677777777776554443323345667777777777654332
Q ss_pred eeeccccccccccCCcccCCccEEeEeccCCCCcCc--c----cccCCCccEEeEecCccchhhcccCcccCCccccCCC
Q 037222 744 LKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT--F----LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHI 817 (904)
Q Consensus 744 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~----l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 817 (904)
..+. .....++.|+.|.|+.|...++.. . -..+..|+.|.|++|+.+++-.. ...
T Consensus 362 ~tL~--------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-----------e~l 422 (483)
T KOG4341|consen 362 GTLA--------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-----------EHL 422 (483)
T ss_pred hhHh--------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-----------HHH
Confidence 1011 112467777888887776555431 1 23566777777877777665532 135
Q ss_pred CCCCcccEeecccccccccccCC--CCCCCCcceEe
Q 037222 818 SPFENLQSLHLSYLPILRSIYWK--PLPFTHLKKME 851 (904)
Q Consensus 818 ~~~~~L~~L~L~~~~~L~~i~~~--~~~~~~L~~L~ 851 (904)
..+++|+.+++-+|.....-+.. ...+|+++...
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 56677777777777665543322 22345544443
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=4.5e-08 Score=100.08 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
..+.+.++|++|+|||+|++.+++.. . .....+.|+.+... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~-~--~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY-L--LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 44678999999999999999999986 2 12234567765311 00000 11112
Q ss_pred HcCCcEEEEecccccc---ccccc-ccCCCCCCCCCCcEEEE-Eecc---------hhhhccccCCceeecccCCHHHHH
Q 037222 258 LGEKRFVLLLDDLWER---VDLTK-VGVPLPGPQNTTSKVVF-ATRF---------IDVCGSMEADRKFLVACLSEKDAW 323 (904)
Q Consensus 258 l~~~r~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~Iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 323 (904)
++ +.-+|||||+|.. ..|+. +...+......|..+|| |++. +++...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999863 34542 22222211123555554 4443 344555555678999999999999
Q ss_pred HHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 324 ELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 324 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+++.+.+.......+ +++..-|++.+.|..-++..+-
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 999998864432222 4566778888887665554433
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=1.1e-07 Score=114.72 Aligned_cols=307 Identities=16% Similarity=0.172 Sum_probs=175.6
Q ss_pred ccchHHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC---CHHHHHHHHHH
Q 037222 160 VVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL---RLEKIQDDIGK 233 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~---~~~~~~~~i~~ 233 (904)
++||+.+++.|...+.. +...++.|.|..|||||+|+++|.....+.+..|-...+-....+. ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998875 4667999999999999999999999873222222111111111111 12334444444
Q ss_pred Hh-------------------CCCC---------------CC-----CCCCCHHH-----HHHHHHHHH-cCCcEEEEec
Q 037222 234 KI-------------------GLSD---------------DS-----WKNKSFEE-----KAVDILRSL-GEKRFVLLLD 268 (904)
Q Consensus 234 ~l-------------------~~~~---------------~~-----~~~~~~~~-----~~~~l~~~l-~~~r~LlVlD 268 (904)
++ +... .+ ........ ....+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 44 1110 00 00011111 112223333 3569999999
Q ss_pred cc-cccc-ccccccCCCCCCCC----CCcEEE--EEecch--hhhccccCCceeecccCCHHHHHHHHHHhhCccccCCC
Q 037222 269 DL-WERV-DLTKVGVPLPGPQN----TTSKVV--FATRFI--DVCGSMEADRKFLVACLSEKDAWELFREKVGEETLQSH 338 (904)
Q Consensus 269 dv-~~~~-~~~~~~~~l~~~~~----~gs~Ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 338 (904)
|+ |-+. .++-+..... ... ....|. .|.+.. .+-....+...+.|.||+..+...+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm~-~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLMD-RIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred cccccChhHHHHHHHHHH-hcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99 5332 2222211111 000 011222 223322 2222233457899999999999999998886533
Q ss_pred ccHHHHHHHHHHHhCCchhHHHHHHHHHhcC------CCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhh
Q 037222 339 HDIVELAQIVAKECGGLPLALITIGRAMACK------RTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETI 412 (904)
Q Consensus 339 ~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~ 412 (904)
....+....|+++..|+|+.+..+-..+... .+...|..-...+.. .... +.+...+..-.+.||+ ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~-~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATT-DAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhh-HHHHHHHHHHHhcCCH-HH
Confidence 2334567899999999999999998888763 344455432222211 1112 2356668888999999 89
Q ss_pred hHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHHHHHHhcccccc-------cC--C-eeehhhHH
Q 037222 413 RSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVGTLIHACLLEGI-------ED--D-RVKMHDVV 482 (904)
Q Consensus 413 k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~-------~~--~-~~~mHdlv 482 (904)
+..+-..|++...|. .+.|...|- +.....+....+.|....++-.. .. . +-..||+|
T Consensus 311 ~~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999999876665 444444442 12234444445555554444211 11 2 22578888
Q ss_pred HHHHHHH
Q 037222 483 RDMALWI 489 (904)
Q Consensus 483 ~d~a~~i 489 (904)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8887533
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=8.9e-07 Score=101.56 Aligned_cols=208 Identities=14% Similarity=0.117 Sum_probs=123.8
Q ss_pred cccccchHHHHHHHHHHHhc----C-CceEEEEEcCCCCcHHHHHHHHHHhcccC--CCCCC--EEEEEEecCCCCHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVE----E-SVGIIGLYGMGGVGKTTLLTHINNKFLES--PTNFD--CVIWVVVSKDLRLEKI 227 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~vs~~~~~~~~ 227 (904)
+..+.|||+++++|...|.+ . ...++.|+|++|+|||+.++.|.+..... ..... .+++|.+..-.++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999998864 2 23577899999999999999998775211 12222 3577777777788899
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc---CCcEEEEeccccccc--ccccccCCCCCCCCCCcEEEE--Eecch
Q 037222 228 QDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG---EKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVVF--ATRFI 300 (904)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~Iiv--TtR~~ 300 (904)
+..|.+++..... .......+....+...+. +...+||||+++.-. .-+.+...+......+++|+| +|...
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 9999998843321 122233445555555542 234589999997421 111111111101123445443 33322
Q ss_pred hhh--------ccccCCceeecccCCHHHHHHHHHHhhCccc-cCCCccHHHHHHHHHHHhCCchhHHHHHHHHH
Q 037222 301 DVC--------GSMEADRKFLVACLSEKDAWELFREKVGEET-LQSHHDIVELAQIVAKECGGLPLALITIGRAM 366 (904)
Q Consensus 301 ~v~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (904)
+.. ..++ ...+..+|++.++-.+++..++.... .-.+..++-+|+.++...|-.-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 221 1111 23467799999999999999886422 12233344455555555555666766655444
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=3.1e-10 Score=121.87 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=109.9
Q ss_pred eeEEEeeccccccccC-CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 519 VTRLSLMQNQIKILSE-VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 519 ~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
....+++.|.+..+|. .+.|..|..+.++ .+.+..+|.. ++++..|.+|||+.+ .+. .+|..++.|+ |+.|-++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy-~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILY-HNCIRTIPEA-ICNLEALTFLDLSSN-QLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHH-hccceecchh-hhhhhHHHHhhhccc-hhh-cCChhhhcCc-ceeEEEe
Confidence 3445566666666554 3556667777777 4556667665 677777777777777 777 7777777776 7777777
Q ss_pred cCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCC
Q 037222 598 RTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKY 677 (904)
Q Consensus 598 ~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 677 (904)
+|+++.+|..++.+..|.+||.+.| .+..+|.. ++.|.+|+.|.+..|.... .+.++..|+
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~~Lp- 212 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELCSLP- 212 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHhCCc-
Confidence 7777777777777777777777777 67777776 7777777777777666543 344455444
Q ss_pred CcEEEEEecchhhHHHhhhcccccccceeeEecccC
Q 037222 678 LEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAG 713 (904)
Q Consensus 678 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 713 (904)
|..|+++.|....++. ....+++|+.|.|.+++
T Consensus 213 Li~lDfScNkis~iPv---~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPV---DFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeeeecccCceeecch---hhhhhhhheeeeeccCC
Confidence 5566666555444332 11223566666666654
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=3.9e-07 Score=101.99 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=106.7
Q ss_pred ccccchHHHHHH---HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQ---VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.++||++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ... |+.++.......-.+.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~-----~~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAP-----FEALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----EEEEecccccHHHHHHHH--
Confidence 357888877665 7777777777788899999999999999999876 222 233322211111111121
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHH-HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEE--ecchh--h-hccc
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRS-LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFA--TRFID--V-CGSM 306 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivT--tR~~~--v-~~~~ 306 (904)
...... ..+++.+|++|+++.- ...+.+...+. .|..++|. |.+.. + ....
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHh
Confidence 111111 2467889999999853 33444444443 24445543 34332 1 1222
Q ss_pred cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHH
Q 037222 307 EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGR 364 (904)
Q Consensus 307 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 364 (904)
.....+.+.+++.++.+.++.+.+.........-..+..+.|++.|+|.+..+..+..
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3346889999999999999998764321000012245677899999999877655443
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.70 E-value=1.2e-06 Score=89.58 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=93.0
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 037222 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEE 249 (904)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 249 (904)
|.+++..+...-+.+||++|+||||||+.+.... +... ..||..|.+..-..-.+.|.++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 4455566788889999999999999999999886 2222 5678877664434444444443221
Q ss_pred HHHHHHHHHcCCcEEEEeccccc--ccccccccCCCCCCCCCCcEEEE--Eecchhh---hccccCCceeecccCCHHHH
Q 037222 250 KAVDILRSLGEKRFVLLLDDLWE--RVDLTKVGVPLPGPQNTTSKVVF--ATRFIDV---CGSMEADRKFLVACLSEKDA 322 (904)
Q Consensus 250 ~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~Iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~ 322 (904)
...+.++|.+|.+|.|.. ..+.+. .+| ...+|+-++| ||.++.. +..+....++.|++|+.++.
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD~---fLP-~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQDT---FLP-HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhhc---ccc-eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 123567899999999963 333333 344 4556766665 7777654 34456678999999999999
Q ss_pred HHHHHHhh
Q 037222 323 WELFREKV 330 (904)
Q Consensus 323 ~~Lf~~~~ 330 (904)
..++.+..
T Consensus 287 ~~iL~rai 294 (554)
T KOG2028|consen 287 VTILMRAI 294 (554)
T ss_pred HHHHHHHH
Confidence 99988854
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.3e-09 Score=107.86 Aligned_cols=109 Identities=24% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCCCCceEEEeecCcccccccc-hhhcCCCcccEEEeecCCCcc--cccCccccccccCcEeecccCcccccchhh--hc
Q 037222 536 PTCPDLLTLFLDFNEELEMIAD-GFFQFMPSLKVLKISNCGNFT--FQLPLGMSKLGSLELFDISRTEIQELPEEL--KL 610 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~Lr~L~l~~~~~i~--~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~--~~ 610 (904)
+++.+|+...+. +..+...+. +..+.|++++.||||.+ -+. ..+-.-+..|++|+.|+++.|.+.....+. ..
T Consensus 118 sn~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLD-NYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeec-CccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 678888988888 555555442 45778999999999988 444 123334457888999999888776543332 35
Q ss_pred CCCCcEeeccccccccc--cchhhhcCCCCCceeeecccC
Q 037222 611 LVNLKCLNLRWTSKLIR--IPRQLISNSSGLRVLRMFATG 648 (904)
Q Consensus 611 L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~ 648 (904)
+.+|+.|.|+.| .++. +-. ....+++|..|++..|.
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~-~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQW-ILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHH-HHHhCCcHHHhhhhccc
Confidence 678888888888 4442 111 13456778888887763
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.61 E-value=2.9e-07 Score=94.60 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 037222 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW 242 (904)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (904)
.+..++.+.+++.......+.|+|++|+|||+||+.+++.. . ......+|+.++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~-~--~~~~~~~~i~~~~~~------~~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA-E--ERGKSAIYLPLAELA------QAD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hcCCcEEEEeHHHHH------HhH-----------
Confidence 45567777777655667789999999999999999999886 2 223345666544321 100
Q ss_pred CCCCHHHHHHHHHHHHcCCcEEEEeccccccc---ccc-cccCCCCCCCCCCcEEEEEecchhh---------hccccCC
Q 037222 243 KNKSFEEKAVDILRSLGEKRFVLLLDDLWERV---DLT-KVGVPLPGPQNTTSKVVFATRFIDV---------CGSMEAD 309 (904)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~~-~~~~~l~~~~~~gs~IivTtR~~~v---------~~~~~~~ 309 (904)
..+...+++ .-+||+||++... .|. .+...+......+.+||+||+.... ...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011112222 2389999997532 232 2332222011234578898885321 1122224
Q ss_pred ceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHH
Q 037222 310 RKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGR 364 (904)
Q Consensus 310 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 364 (904)
..+++.+++.++...++.+.+....... -.+..+.+++.++|.|..+..+..
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 6789999999999999887653222111 234557777788888877766543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.5e-09 Score=104.95 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=19.4
Q ss_pred CCcEeecccccccccc-chhhhcCCCCCceeeecccCC
Q 037222 613 NLKCLNLRWTSKLIRI-PRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 613 ~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~ 649 (904)
.||+|||++. .++.- -.+.++.+.+|+.|.+.++..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~L 222 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRL 222 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccccc
Confidence 4666666654 33321 123355667777777766554
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.7e-06 Score=93.30 Aligned_cols=177 Identities=12% Similarity=0.159 Sum_probs=116.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcc---cCCCCCCEEEEEEe-cCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFL---ESPTNFDCVIWVVV-SKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-s~~~~~~~~~~~i~ 232 (904)
.+++|.+..++.+..++..+.. +...++|+.|+||||+|+.++.... ....|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3578999999999999987654 5678999999999999999998641 12456776666542 222333332 2333
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccc--cccccccccCCCCCCCCCCcEEEEEecchhhh--ccccC
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLW--ERVDLTKVGVPLPGPQNTTSKVVFATRFIDVC--GSMEA 308 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~--~~~~~ 308 (904)
+.+.... ..+++-++|+|+++ +...+..+...+. ....++.+|++|.+.+.. .....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhh
Confidence 3332211 12445566677664 4456777777776 566788888888765432 11234
Q ss_pred CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 309 DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 309 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
...+++.+++.++....+.+.+.... .+.++.++..++|.|..+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 57899999999999888876543211 23466889999999876543
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.2e-09 Score=104.37 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=125.4
Q ss_pred CCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCc
Q 037222 637 SGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTK 716 (904)
Q Consensus 637 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 716 (904)
+.||+|+++...+.. .....-|..+.+|+.|++....... .+.........|+.|+|+.|++.+
T Consensus 185 sRlq~lDLS~s~it~--------------stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV--------------STLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhhHHhhcchhheeH--------------HHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccc
Confidence 358999998766542 1123345667777777776543221 111111112589999999999988
Q ss_pred chhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCC---CcCcc-cccCCCccEEeE
Q 037222 717 SIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKL---KDVTF-LVFAPNLKSLEL 792 (904)
Q Consensus 717 ~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l---~~l~~-l~~l~~L~~L~L 792 (904)
.......+.+|+.|.+|+|++|.-..+. +.... ..--++|+.|+|+||... .++.. ...+|+|.+|+|
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAV-------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHH-------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 7776677899999999999999755432 11110 123468999999999632 22333 358999999999
Q ss_pred ecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccc-ccCCCCCCCCcceEeeccCC
Q 037222 793 LQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRS-IYWKPLPFTHLKKMEVRRCD 856 (904)
Q Consensus 793 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~-i~~~~~~~~~L~~L~i~~C~ 856 (904)
++|..++.-.. ..+..|+.|++|.++.|-.+-- -.....+.|+|.+|++.+|-
T Consensus 321 SD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 99988876432 2466799999999999864321 11345678999999999874
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=2e-08 Score=99.64 Aligned_cols=141 Identities=20% Similarity=0.212 Sum_probs=100.3
Q ss_pred cchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeee
Q 037222 667 VLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKI 746 (904)
Q Consensus 667 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 746 (904)
.....+...+.|+.++++.|....+. ...++.+.++.|.++.+..... ..+..+++|+.|++++|.-.+ ..
T Consensus 275 ~~~~~~dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~--~~ 345 (490)
T KOG1259|consen 275 SALVSADTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAE--CV 345 (490)
T ss_pred ceEEecchHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeee----hhhhhcccceEeecccchhHh--hh
Confidence 34455666777888888877655443 3444567899999988754322 357788999999999875433 23
Q ss_pred ccccccccccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEe
Q 037222 747 DYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSL 826 (904)
Q Consensus 747 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 826 (904)
.|. ..+.|+++|.|++| .++++.-++++=+|..|+++++ .++.+- ....++.+|.|+.|
T Consensus 346 Gwh---------~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ld----------eV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 346 GWH---------LKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELD----------EVNHIGNLPCLETL 404 (490)
T ss_pred hhH---------hhhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHH----------HhcccccccHHHHH
Confidence 443 26889999999998 6788888888899999999884 455552 22368889999999
Q ss_pred eccccccccccc
Q 037222 827 HLSYLPILRSIY 838 (904)
Q Consensus 827 ~L~~~~~L~~i~ 838 (904)
.|.++| +..++
T Consensus 405 ~L~~NP-l~~~v 415 (490)
T KOG1259|consen 405 RLTGNP-LAGSV 415 (490)
T ss_pred hhcCCC-ccccc
Confidence 999887 44443
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=3.9e-06 Score=96.12 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=111.9
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.++||.+..++.|.+++..+. .+.+.++|..|+||||+|+.+.+.. .-...++. ..+..=...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCC-------CCCcccHHHHHHhcCCC
Confidence 468999999999999998765 4566799999999999999998876 21111100 00000011111111000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH----HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hh-cc
Q 037222 237 LS---DDSWKNKSFEEKAVDILRS----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VC-GS 305 (904)
Q Consensus 237 ~~---~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~-~~ 305 (904)
.. .+.......++..+.+... ..++.-++|||+++.. ..+..+...+. .-....++|+||++.. +. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECChhhccchh
Confidence 00 0000011112211111111 1245568899999854 33565655554 3345678887777643 32 22
Q ss_pred ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch-hHHHHHHH
Q 037222 306 MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP-LALITIGR 364 (904)
Q Consensus 306 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 364 (904)
......|.+++++.++..+.+.+.+....... ..+..+.|++.++|.. -|+..+-.
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 23457899999999999999988875443222 2456678999998865 45554433
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=4.9e-09 Score=112.82 Aligned_cols=173 Identities=21% Similarity=0.206 Sum_probs=135.1
Q ss_pred CCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcEe
Q 037222 538 CPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCL 617 (904)
Q Consensus 538 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L 617 (904)
+..-...+++ .+.+..+|.. ++.|-.|..|.|+.+ .+. .+|..+++|..|.||+|+.|.+..+|..++.|+ |+.|
T Consensus 74 ltdt~~aDls-rNR~~elp~~-~~~f~~Le~liLy~n-~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLS-RNRFSELPEE-ACAFVSLESLILYHN-CIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhcc-ccccccCchH-HHHHHHHHHHHHHhc-cce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence 3344456777 5667788877 778888999999999 888 999999999999999999999999999998865 8999
Q ss_pred eccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhc
Q 037222 618 NLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSS 697 (904)
Q Consensus 618 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 697 (904)
-+++| +++.+|.+ |+.+..|.+|+.+.|.+.. ....++.|..|+.|.+..+....+..-...
T Consensus 149 i~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s----------------lpsql~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 149 IVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS----------------LPSQLGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred EEecC-ccccCCcc-cccchhHHHhhhhhhhhhh----------------chHHhhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 99988 89999998 9999999999999887653 455678888888888776655444332221
Q ss_pred ccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCC
Q 037222 698 NKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIE 740 (904)
Q Consensus 698 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 740 (904)
-.|.+|+++++.. ..++ ..+.+|+.|++|.|.+|+-
T Consensus 211 ----LpLi~lDfScNki-s~iP--v~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 211 ----LPLIRLDFSCNKI-SYLP--VDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ----CceeeeecccCce-eecc--hhhhhhhhheeeeeccCCC
Confidence 2577788876643 2333 4678899999999988763
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=7.7e-06 Score=93.54 Aligned_cols=242 Identities=19% Similarity=0.185 Sum_probs=135.5
Q ss_pred ccccchHHHHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..++|.+..++++.+|+..- ..+.+.|+|++|+||||+|+.+++.. .|+ .+-+..+...+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHH
Confidence 46899999999999998641 26789999999999999999999986 233 2333444332222 2222322
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc------ccccccCCCCCCCCCCcEEEEEecch-hhhc--
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV------DLTKVGVPLPGPQNTTSKVVFATRFI-DVCG-- 304 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~IivTtR~~-~v~~-- 304 (904)
...... .....++-+||+|+++... .+..+...+. ..+..||+|+... ....
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhh
Confidence 221110 0011367899999997532 2344433332 1234466666432 2211
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCC---CHHHHHHHHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKR---TAEEWIHAVEV 381 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~---~~~~w~~~~~~ 381 (904)
.......+.+.+++.++....+.+.+.......+ .+....|++.++|-.-.+......+.... +.+.-..+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~-- 222 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG-- 222 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh--
Confidence 1123467899999999999998887754332222 35678899999997765544433343322 222222111
Q ss_pred HhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccC
Q 037222 382 LRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEE 445 (904)
Q Consensus 382 l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 445 (904)
. ...+..++.++..-+..=....+...+..+. ++- ..+-.|+.|.+...
T Consensus 223 --~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 223 --R-----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred --c-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 0 1112355666655444211212333222221 122 34678999998765
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.6e-08 Score=102.43 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCCcccEEEeecCCCcccccCc--cccccccCcEeecccCcc---cccchhhhcCCCCcEeecccc
Q 037222 562 FMPSLKVLKISNCGNFTFQLPL--GMSKLGSLELFDISRTEI---QELPEELKLLVNLKCLNLRWT 622 (904)
Q Consensus 562 ~l~~Lr~L~l~~~~~i~~~lp~--~i~~L~~L~~L~l~~~~i---~~Lp~~~~~L~~L~~L~l~~~ 622 (904)
++++||...|.++ .+. ..+. ....|++++.|||+.|-+ ..+-.-...|++|+.|+|+.|
T Consensus 119 n~kkL~~IsLdn~-~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCc-ccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 4555666666665 444 3332 334555555555555522 222233344555555555555
No 56
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.48 E-value=3.8e-05 Score=89.78 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=119.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC---CEEEEEEecCC---CCHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF---DCVIWVVVSKD---LRLEKIQDDI 231 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~---~~~~~~~~~i 231 (904)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4578999999988888766666789999999999999999998876 322222 12345554321 2222221111
Q ss_pred ---------------HHHhCCCC----------------CCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--ccccc
Q 037222 232 ---------------GKKIGLSD----------------DSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTK 278 (904)
Q Consensus 232 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~ 278 (904)
+...+... +.... -....+..+...++++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~-Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE-LDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc-CCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11112110 00111 1233567888888899999997777643 45777
Q ss_pred ccCCCCCCCCCCcEEEE--Eecchhh-hcc-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCC
Q 037222 279 VGVPLPGPQNTTSKVVF--ATRFIDV-CGS-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGG 354 (904)
Q Consensus 279 ~~~~l~~~~~~gs~Iiv--TtR~~~v-~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 354 (904)
+...+. ...+...|++ ||++... ... ......+.+.+++.+|.+.++.+.+........ .++.+.|.+.+..
T Consensus 312 ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 776665 4444444555 5664432 111 123356789999999999999987753221111 3344455555544
Q ss_pred chhHHHHHHHH
Q 037222 355 LPLALITIGRA 365 (904)
Q Consensus 355 lPLai~~~~~~ 365 (904)
-+-|+..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 45555544433
No 57
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=2.6e-07 Score=85.14 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
.+++.|.|+-|+|||||+++++.+. . ....++|++.......... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 2 3445677765443211000 000 223333333
Q ss_pred cCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhcc------ccCCceeecccCCHHHH
Q 037222 259 GEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGS------MEADRKFLVACLSEKDA 322 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 322 (904)
.+++.+++||++....+|......+. +.....+|++|+.+...... .+....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44778899999988888888766665 44456899999998766422 12335789999998874
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.44 E-value=2.8e-06 Score=87.10 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=95.8
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 037222 160 VVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSD 239 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (904)
++|-......+...........+.|+|..|+|||+|++.+++.. .. ....+.|+++.+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~~--~~~~~~y~~~~~------~~~~~~------- 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-EQ--AGRSSAYLPLQA------AAGRLR------- 85 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCcEEEEeHHH------hhhhHH-------
Confidence 33433344444443333344579999999999999999999886 22 223556765332 111111
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc---ccccc-ccCCCCCCCCCCcEEEEEecchh---------hhccc
Q 037222 240 DSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER---VDLTK-VGVPLPGPQNTTSKVVFATRFID---------VCGSM 306 (904)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~IivTtR~~~---------v~~~~ 306 (904)
...+.+ .+.-+||+||+... ..|.. +...+......|..||+|++... +...+
T Consensus 86 -------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 -------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 011112 23358999999643 22322 22211101123567999998532 12223
Q ss_pred cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 307 EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 307 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
.....+++++++.++-..++.+++.......+ ++...-|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 33568899999999999999987753321222 455677888887765444
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=2.2e-07 Score=104.49 Aligned_cols=87 Identities=31% Similarity=0.461 Sum_probs=59.2
Q ss_pred hcCCCcccEEEeecCCCcccccCccccccc-cCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCC
Q 037222 560 FQFMPSLKVLKISNCGNFTFQLPLGMSKLG-SLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSG 638 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~-~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~ 638 (904)
...+..+..|++.++ .++ .+|..++.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|.. .+.+++
T Consensus 112 ~~~~~~l~~L~l~~n-~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNN-NIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSN 187 (394)
T ss_pred hhcccceeEEecCCc-ccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhh
Confidence 344466777777777 777 7776666664 777777777777777766777777777777777 66777763 446677
Q ss_pred CceeeecccCCc
Q 037222 639 LRVLRMFATGYE 650 (904)
Q Consensus 639 L~~L~l~~~~~~ 650 (904)
|+.|++.+|.+.
T Consensus 188 L~~L~ls~N~i~ 199 (394)
T COG4886 188 LNNLDLSGNKIS 199 (394)
T ss_pred hhheeccCCccc
Confidence 777777766554
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.1e-05 Score=85.37 Aligned_cols=201 Identities=17% Similarity=0.222 Sum_probs=128.4
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..+.+|+.+++++...|.+ ....-+.|+|..|+|||+.++.+.+.........+ .++|.+-...++-+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4488999999999988864 23344899999999999999999999832222232 899999999999999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEeccccccccc--ccccCCCCCCCCCCcEEE--EEecchhhhcccc
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSL--GEKRFVLLLDDLWERVDL--TKVGVPLPGPQNTTSKVV--FATRFIDVCGSME 307 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~~~--~~~~~~l~~~~~~gs~Ii--vTtR~~~v~~~~~ 307 (904)
+++... .......+....+.+.+ .++.+++|||++..-..- +-+...+.......++|+ ..+-+..+...+.
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 996222 13455666777777777 457899999999753221 122111110111134443 3333333322221
Q ss_pred -------CCceeecccCCHHHHHHHHHHhhC---ccccCCCccHHHHHHHHHHHhC-CchhHHHHH
Q 037222 308 -------ADRKFLVACLSEKDAWELFREKVG---EETLQSHHDIVELAQIVAKECG-GLPLALITI 362 (904)
Q Consensus 308 -------~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 362 (904)
....+..+|.+.+|-...+..++. ... ..++..-+.+..++..-+ -.-.||..+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 123478899999999999999873 222 333444444444444444 444555443
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.42 E-value=4.3e-06 Score=91.85 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=109.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHH---
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGK--- 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~--- 233 (904)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+.. . ...+. ..++++++.-.+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 4689999999999999887766678899999999999999999876 2 22222 234444432110 00000000
Q ss_pred ---HhCCCCCCCCCCCHHHHHHHHHHHH------cCCcEEEEeccccccc--ccccccCCCCCCCCCCcEEEEEecch-h
Q 037222 234 ---KIGLSDDSWKNKSFEEKAVDILRSL------GEKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVVFATRFI-D 301 (904)
Q Consensus 234 ---~l~~~~~~~~~~~~~~~~~~l~~~l------~~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IivTtR~~-~ 301 (904)
.++... . ...........+.+.. .+.+-+||+||+..-. ....+...+. .....+++|+||... .
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhh
Confidence 000000 0 0011111222221111 1345589999996432 2333333332 223456788777543 2
Q ss_pred hhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 302 VCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 302 v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
+.. .......+.+.+++.++...++.+.+....... -.+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 222 122345788999999999999988765433221 245677888999887655433
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=4.2e-07 Score=92.95 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=66.1
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCCCH
Q 037222 171 WRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKIQDDIGKKIGLSDDSWKNKSF 247 (904)
Q Consensus 171 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~ 247 (904)
++.+.. ..-..++|+|++|+|||||++.+++.. . ..+|+..+|+++++. +++.++++.+...+-...- +....
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~ 82 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPE 82 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHH
Confidence 344433 355788999999999999999999997 3 348999999998777 7899999999433322110 11111
Q ss_pred H------HHHHHHHHH-HcCCcEEEEeccccc
Q 037222 248 E------EKAVDILRS-LGEKRFVLLLDDLWE 272 (904)
Q Consensus 248 ~------~~~~~l~~~-l~~~r~LlVlDdv~~ 272 (904)
. ......... -.+++.++++|++..
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Confidence 1 111222222 258999999999953
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=3.8e-08 Score=97.64 Aligned_cols=127 Identities=23% Similarity=0.345 Sum_probs=67.5
Q ss_pred ccceeEEEeeccccccccCC-CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 516 SENVTRLSLMQNQIKILSEV-PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
|+.+..+++++|.+..+... .-.|.+|.|+++ .+.+..+.. +..+++|..||||+| .++ ++-..--+|-+.+.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v~n--La~L~~L~~LDLS~N-~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTVQN--LAELPQLQLLDLSGN-LLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeeehh--hhhcccceEeecccc-hhH-hhhhhHhhhcCEeee
Confidence 45555566666655554433 334556666666 333444433 455556666666666 444 333333345555566
Q ss_pred ecccCcccccchhhhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCC
Q 037222 595 DISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 595 ~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 649 (904)
.|++|.|+.| +++++|.+|..||+++| +++.+.. ..|++|+.|++|.+.+|.+
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 6666655555 35556666666666655 4444432 1155666666666655544
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=2.1e-06 Score=81.46 Aligned_cols=124 Identities=23% Similarity=0.138 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 037222 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDD 240 (904)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (904)
+|++..+..+...+.....+.+.|+|.+|+||||+++.+++.. . ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788889999998877667889999999999999999999987 2 222345666655433222211111000
Q ss_pred CCCCCCHHHHHHHHHHHHcCCcEEEEecccccc-----cccccccCCCCCC--CCCCcEEEEEecchh
Q 037222 241 SWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER-----VDLTKVGVPLPGP--QNTTSKVVFATRFID 301 (904)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----~~~~~~~~~l~~~--~~~gs~IivTtR~~~ 301 (904)
............++.++|+||++.. ..+..+...+... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999842 2222222222101 135778888888544
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5e-06 Score=97.27 Aligned_cols=180 Identities=17% Similarity=0.160 Sum_probs=109.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceE-EEEEcCCCCcHHHHHHHHHHhcccCCCC-------------------CCEEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFLESPTN-------------------FDCVIWVV 217 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 217 (904)
..+||.+..+..|.+++..+++.- +.++|+.|+||||+|+.+++... -... |.-.+++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999998766554 58999999999999999998862 1111 11111111
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEE
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR-SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVV 294 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii 294 (904)
.+....+. ...++...+.. -..+++-++|||+++.. .....+...+. ......++|
T Consensus 95 Aas~~kVD--------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFI 153 (944)
T PRK14949 95 AASRTKVD--------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFL 153 (944)
T ss_pred cccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEE
Confidence 11000111 11111211111 12467789999999753 34555544443 333455666
Q ss_pred EEec-chhhh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 295 FATR-FIDVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 295 vTtR-~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
++|. ...+. ........|++++|+.++....+.+.+..... .--.+..+.|++.++|.|--+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 44443 22334578999999999999999887643221 112456778999999988544333
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.6e-05 Score=90.32 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=109.4
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+..++.|.+++..+. .+.+.++|+.|+||||+|+.+++.. .-....+. ..++.-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~-------~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTS-------TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCC-------CCCccCHHHHHHhcCCC
Confidence 468999999999999998765 4577899999999999999998876 11110000 00000011111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhh-c
Q 037222 237 LSD---DSWKNKSFEEKAVDILRS-----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVC-G 304 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~-~ 304 (904)
... +.......++.. .+... ..+++-++|+|+++.- .....+...+. ....+.++|++|.+. .+. .
T Consensus 87 pDviEIDAAs~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHH
Confidence 000 000011122211 11111 2356678999999753 34444544444 333556777777653 232 2
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
.......+++.+++.++....+.+.+....... -.+....|++.++|.+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 224557899999999999999988775433111 23456789999999775443
No 67
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=7.2e-06 Score=87.50 Aligned_cols=166 Identities=19% Similarity=0.182 Sum_probs=101.8
Q ss_pred CCccccccchHHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH
Q 037222 154 RPIERTVVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 154 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 230 (904)
++..+.|+||+.+...+...|.+ +..+++.|.|++|+|||||++.+.... . + ...++... +..+++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHH
Confidence 34457899999999999999864 234689999999999999999999765 1 1 12333222 67999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHH-c-CCcEEEEecccccccccccc---cCCCCCCCCCCcEEEEEecchhhhcc
Q 037222 231 IGKKIGLSDDSWKNKSFEEKAVDILRSL-G-EKRFVLLLDDLWERVDLTKV---GVPLPGPQNTTSKVVFATRFIDVCGS 305 (904)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDdv~~~~~~~~~---~~~l~~~~~~gs~IivTtR~~~v~~~ 305 (904)
|+.+|+.+.......-.....+.+.+.- . |++.+||+- +.+-.++..+ ...+. ....-++|++---.+.+.-.
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchh
Confidence 9999997432111111223333333322 2 566666653 2222222221 01122 33445677776555444222
Q ss_pred c---cCCceeecccCCHHHHHHHHHHhh
Q 037222 306 M---EADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 306 ~---~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
. ..-..|.+++++.++|..+..+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 223468899999999999877654
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1e-05 Score=88.93 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=107.4
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++.. .-..... ..+...-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4679999999999998887654 567899999999999999999876 2111000 000000001111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEeccccccc--ccccccCCCCCCCCCCcEEEEEecch-hhhcc
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVVFATRFI-DVCGS 305 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IivTtR~~-~v~~~ 305 (904)
... +.......++ .+.+.+.+ .+++-++|+|+++... .+..+...+. ......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHH
Confidence 000 0000011111 22222222 2345689999997543 3555555554 344566777766543 33221
Q ss_pred -ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 306 -MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 306 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
.+....+++.+++.++..+.+.+.+....... -++.++.|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23356899999999999998888664322111 2345678999999988544
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=3e-07 Score=103.27 Aligned_cols=121 Identities=29% Similarity=0.396 Sum_probs=98.4
Q ss_pred EEeecccc-ccccCCCCCCCceEEEeecCcccccccchhhcCCC-cccEEEeecCCCcccccCccccccccCcEeecccC
Q 037222 522 LSLMQNQI-KILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMP-SLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT 599 (904)
Q Consensus 522 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~-~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~ 599 (904)
+....+.+ .........+.+..|.+. ++.+..+++. ...+. +|+.|+++++ .+. .+|..++.+++|+.|+++.|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~-~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLD-NNNITDIPPL-IGLLKSNLKELDLSDN-KIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccccCchhhhcccceeEEecC-CcccccCccc-cccchhhccccccccc-chh-hhhhhhhccccccccccCCc
Confidence 44445544 333344566789999999 7778888875 44553 8999999999 999 88888999999999999999
Q ss_pred cccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccC
Q 037222 600 EIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATG 648 (904)
Q Consensus 600 ~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 648 (904)
++..+|...+.+++|+.|+++++ .+..+|.. +..+..|++|.+..|.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCc
Confidence 99999998889999999999999 88999985 5677779999998774
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=7.8e-06 Score=92.52 Aligned_cols=196 Identities=16% Similarity=0.159 Sum_probs=110.0
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH--
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK-- 234 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-- 234 (904)
.++||.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+... ...-+..--+ .++.+..-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn--C~~p~~~~g~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN--CTGADGEGGI-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCccccccC-CCCCCcccHHHHHHHcCCC
Confidence 4689999999999999987764 4568999999999999999988762 1000000000 00000000111111110
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHHH----HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE-Eecchhhh-
Q 037222 235 ---IGLSDDSWKNKSFEEKAVDILRS----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF-ATRFIDVC- 303 (904)
Q Consensus 235 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv-TtR~~~v~- 303 (904)
+.+... .....++..+.+... ..++.-++|+|+++.. ..+..+...+. .-..+.++|+ ||....+.
T Consensus 93 pDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 93 VDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhhh
Confidence 000000 111222222211111 1456679999999753 34555555554 3334555555 44444443
Q ss_pred ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 304 GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 304 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
........+.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.-+..+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2233457899999999999999888765432111 1345578999999998655443
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=5.2e-07 Score=70.81 Aligned_cols=57 Identities=33% Similarity=0.497 Sum_probs=28.8
Q ss_pred cCcEeecccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeeccc
Q 037222 590 SLELFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFAT 647 (904)
Q Consensus 590 ~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 647 (904)
+|++|++++|+++.+|. .+..+++|++|++++| .++.+|.+.+..+++|++|++.+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 34455555555555543 3344555555555544 445555444555555555555544
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.32 E-value=1.4e-05 Score=87.12 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=105.6
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe--cCCCCHHHHHHHHHHHh
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV--SKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l 235 (904)
.+++|++..++.+..++..+..+.+.++|..|+||||+|+.+++.. . ...+.. .++.+ +.......+ .+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l-~-~~~~~~-~~i~~~~~~~~~~~~~-~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL-Y-GEDWRE-NFLELNASDERGIDVI-RNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-c-CCcccc-ceEEeccccccchHHH-HHHHHHH
Confidence 4579999999999999987766778999999999999999999886 2 222221 22222 222111111 1111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhhc-cccCCce
Q 037222 236 GLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVCG-SMEADRK 311 (904)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~~-~~~~~~~ 311 (904)
..... .-...+-++++|+++.- .....+...+. .....+.+|+++... .+.. .......
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 10000 00123558999998643 22333433333 233446777766432 2211 1123457
Q ss_pred eecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 312 FLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 312 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
+++.+++.++....+.+.+....... -.+....+++.++|.+--+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 89999999999999888775433222 24467788999999876543
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=90.95 Aligned_cols=198 Identities=19% Similarity=0.117 Sum_probs=112.9
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++.. .-.+.+....|.|.+... +..-....+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 4679999999999998887654 456999999999999999998887 211222223333321100 0000000000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEec-chhhhcc-cc
Q 037222 237 LSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATR-FIDVCGS-ME 307 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR-~~~v~~~-~~ 307 (904)
.. .....+. ++.+.+.+ .+++-++|+|+++.. ..+..+...+. .....+.+|++|. ...+... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111111 12222222 346679999999753 34555655554 3333445555554 3344222 23
Q ss_pred CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH-HHHHHHH
Q 037222 308 ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL-ITIGRAM 366 (904)
Q Consensus 308 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~~~~l 366 (904)
....+++.+++.++....+.+.+....... -.+....|++.++|.+--+ ..+-.++
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456899999999999999998875433121 2456788999999988544 4443333
No 74
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=1.2e-06 Score=81.46 Aligned_cols=117 Identities=23% Similarity=0.270 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccC--CCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES--PTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (904)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34688999999999999999999886110 00134577999988889999999999999876532 356777778888
Q ss_pred HHHcCCc-EEEEecccccc---cccccccCCCCCCCCCCcEEEEEecc
Q 037222 256 RSLGEKR-FVLLLDDLWER---VDLTKVGVPLPGPQNTTSKVVFATRF 299 (904)
Q Consensus 256 ~~l~~~r-~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~IivTtR~ 299 (904)
+.+...+ .+||+||++.- ..++.+.. +. ...+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HT--CSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HH--hCCCCeEEEEECh
Confidence 8886655 59999999653 12333322 22 2556677777664
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.6e-05 Score=87.14 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=104.0
Q ss_pred ccccchHHHHHHHHHHHhcCC----------ceEEEEEcCCCCcHHHHHHHHHHhcccC------------------CCC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES----------VGIIGLYGMGGVGKTTLLTHINNKFLES------------------PTN 209 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~ 209 (904)
..++|.+..++.+.+++..+. .+-+.++|+.|+||||+|+.++....-. ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999999997653 4568899999999999999998765110 012
Q ss_pred CCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCC
Q 037222 210 FDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVP 282 (904)
Q Consensus 210 f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~ 282 (904)
.|. .++.... .....++ ++.+.+.+ .+++-++|+|+++.. .....+...
T Consensus 85 pD~-~~i~~~~----------------------~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PDV-RVVAPEG----------------------LSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCE-EEecccc----------------------ccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 221 1111100 0111122 11222222 245568888999753 233334444
Q ss_pred CCCCCCCCcEEEEEecc-hhhhcc-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 283 LPGPQNTTSKVVFATRF-IDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 283 l~~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
+. ....+..+|++|.+ ..+... ......+.+.+++.++....+.+..+. + .+.+..++..++|.|....
T Consensus 141 LE-ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VE-EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred hh-cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 43 33345666666655 344322 234578999999999999888754321 1 3457789999999997654
Q ss_pred HH
Q 037222 361 TI 362 (904)
Q Consensus 361 ~~ 362 (904)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 44
No 76
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=9e-06 Score=82.58 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
..+.+.|+|+.|+|||+|++.++... . ..|++.. .+..+++. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999988765 1 1244221 11111111 1
Q ss_pred HcCCcEEEEecccccc----cccccccCCCCCCCCCCcEEEEEecc---------hhhhccccCCceeecccCCHHHHHH
Q 037222 258 LGEKRFVLLLDDLWER----VDLTKVGVPLPGPQNTTSKVVFATRF---------IDVCGSMEADRKFLVACLSEKDAWE 324 (904)
Q Consensus 258 l~~~r~LlVlDdv~~~----~~~~~~~~~l~~~~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~ 324 (904)
+.+ -+|++||+... ..+-.+...+. ..|..||+|++. +++...+.....+++++++.++-.+
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 111 27888999532 12222222222 346679998873 2334444566899999999999999
Q ss_pred HHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 325 LFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 325 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
++.+++.......+ +++..-|++.+.|..-++..+
T Consensus 161 iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 161 VIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 99998854332222 456777888888777666543
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.29 E-value=9.1e-06 Score=87.85 Aligned_cols=179 Identities=14% Similarity=0.111 Sum_probs=104.9
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..++.|.+++..+..+-+.++|++|+||||+|+.+++... ...|. .++-+..+...... ..+++++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 45789988888888888776666788999999999999999998861 22232 12222222222222 1222222111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhhc-cccCCcee
Q 037222 237 LSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVCG-SMEADRKF 312 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~~-~~~~~~~~ 312 (904)
.... . .-.++.-++|+|+++.. .....+...+. .....+++|+++... .+.. .......+
T Consensus 90 ~~~~--~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV--T-------------LPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc--c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0 00235668999999753 22233333332 223456777766532 2211 12234678
Q ss_pred ecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhH
Q 037222 313 LVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLA 358 (904)
Q Consensus 313 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (904)
++++++.++....+.+.+.......+ .+....|++.++|-.-.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 99999999999999888754332222 34567888999886533
No 78
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=8e-07 Score=69.74 Aligned_cols=57 Identities=35% Similarity=0.526 Sum_probs=26.2
Q ss_pred CceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEeecccC
Q 037222 540 DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDISRT 599 (904)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~~~ 599 (904)
+|++|+++ ++.+..+|++.|.++++|++|++++| .++ .+| ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~-~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNN-NLT-SIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEET-SSTESEECTTTTTTGTTESEEEETSS-SES-EEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCC-ccC-ccCHHHHcCCCCCCEEeCcCC
Confidence 34444554 33444444444455555555555544 444 222 23444444444444444
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.9e-05 Score=88.87 Aligned_cols=185 Identities=19% Similarity=0.200 Sum_probs=106.3
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCC-------------------CCEEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTN-------------------FDCVIWVV 217 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 217 (904)
.+++|.+.....+...+..+.. +.+.++|++|+||||+|+.+++.. ..... +...+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL-NCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 4689999888888888877665 557899999999999999998876 21110 00111111
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
.+.......+ ++|.+.... .-..+++-++|+|+++.- .....+...+. .......+|+
T Consensus 93 aa~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Il 152 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVL 152 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 1111111111 111111100 012345679999999643 33444544443 2223344444
Q ss_pred Eecc-hhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCC-chhHHHHHHHHH
Q 037222 296 ATRF-IDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGG-LPLALITIGRAM 366 (904)
Q Consensus 296 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l 366 (904)
+|.+ ..+.. .......+++.+++.++....+.+.+....... -.+....|++.++| .+.|+..+-.+.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4443 33322 223456889999999999999888774332112 13456778887765 467776665543
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=1.9e-07 Score=95.35 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=11.0
Q ss_pred hhhcccCccCceeecccC
Q 037222 722 AAFADLNHLNELYIYEGI 739 (904)
Q Consensus 722 ~~l~~~~~L~~L~l~~~~ 739 (904)
..+..|++|+.|+|..|.
T Consensus 207 eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHhCCcceeeecccch
Confidence 345566666666666554
No 81
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.25 E-value=2.4e-06 Score=84.78 Aligned_cols=44 Identities=30% Similarity=0.407 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 160 VVGLQSQLEQVWRCLV---EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|+||+.+++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2457899999999999999999999988
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.5e-05 Score=87.96 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=109.0
Q ss_pred ccccchHHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.. . ...... ...+....+ ...|.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-n-ce~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-N-CENPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-C-cccccC--ccccCCCcH----HHHHHccCC
Confidence 46799999999999999887654 57899999999999999999876 2 111110 000111111 122222111
Q ss_pred CCCCCC---CCCCH---HHHHHHHHH-HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEE-EEecchhhh-cc
Q 037222 237 LSDDSW---KNKSF---EEKAVDILR-SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVV-FATRFIDVC-GS 305 (904)
Q Consensus 237 ~~~~~~---~~~~~---~~~~~~l~~-~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii-vTtR~~~v~-~~ 305 (904)
...-.+ ..... .++.+.+.. ...++.-++|+|+++.- ..+..+...+. .......+| .||....+. ..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHH
Confidence 100000 01111 122222221 12456679999999753 44666655554 323344544 444444443 22
Q ss_pred ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhH
Q 037222 306 MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLA 358 (904)
Q Consensus 306 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (904)
......|.+.+++.++..+.+.+.+...... --.+....|++.++|.+--
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHHH
Confidence 3345789999999999999888876543211 1245678899999998743
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3.5e-05 Score=83.91 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC-CCCCE-EEEEEecCCCCHHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDC-VIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||+|+|..+.....-.. ...+. ..-.........-...+.|...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 5689999999999999987764 4688999999999999999888762111 00000 0000000000000111112111
Q ss_pred hC-------CCC-CC----CCCCCHHHHHHHHHHHHc-----CCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 235 IG-------LSD-DS----WKNKSFEEKAVDILRSLG-----EKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 235 l~-------~~~-~~----~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
-- ... +. ...-..++ ++.+.+.+. +++-++|+||++.. .....+...+. ....++.+|+
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~IL 176 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFLL 176 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEEE
Confidence 00 000 00 00112222 334444442 56779999999743 33444444443 3334566777
Q ss_pred Eecchh-hh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 296 ATRFID-VC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 296 TtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+|.+.+ +. ........+.+.+++.++..+++.+...... .+....+++.++|.|..+..+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 666553 32 2233457899999999999999987643211 1222678999999998765543
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=5.3e-05 Score=89.40 Aligned_cols=168 Identities=21% Similarity=0.247 Sum_probs=98.6
Q ss_pred ccccchHHHHH---HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHH
Q 037222 158 RTVVGLQSQLE---QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~ 233 (904)
.+|+|.+..+. .+.+.+..+....+.++|++|+||||||+.+++.. ...|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~-----~lna~~~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS-----SLNAVLAGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce-----eehhhhhhhH--------
Confidence 45788887764 46666666777778999999999999999999876 33441 111100 000
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEE--ecchh--hh-c
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSL--GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFA--TRFID--VC-G 304 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivT--tR~~~--v~-~ 304 (904)
+..+......+.+ .+++.++||||++.- ..++.+...+. .|+.++|+ |.+.. +. .
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhH
Confidence 1111112222222 246789999999743 33444443332 35555553 33321 21 1
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccc----cCCCccHHHHHHHHHHHhCCchh
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEET----LQSHHDIVELAQIVAKECGGLPL 357 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~GlPL 357 (904)
.......+.+++|+.++...++.+.+.... .....--++....|++.+.|..-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 122346799999999999999988764110 00011124556788889988754
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=3.8e-05 Score=86.74 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=109.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE-EEEEEecCCCCHHHHHHHHHHHh
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l 235 (904)
.+++|.+..+..+...+..+.. +.+.++|+.|+||||+|+.+++.. .-...... .-+..+... .....|....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 4579999999988887776653 578899999999999999999876 21111100 000000000 0111111100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHH----HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE-Eecchhhhcc
Q 037222 236 GLSD---DSWKNKSFEEKAVDILR----SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF-ATRFIDVCGS 305 (904)
Q Consensus 236 ~~~~---~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv-TtR~~~v~~~ 305 (904)
.... +.......++....+.. -+.+++-++|+|+++.- ..+..+...+. .....+.+|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHH
Confidence 0000 00011122222221111 12356779999999853 44666665554 3344556554 5554455332
Q ss_pred -ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 306 -MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 306 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
......+++.+++.++....+.+.+....... ..+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23456899999999999999998885433111 1345677999999977444
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.4e-05 Score=88.89 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=109.2
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC------------------CCCCEEEEEEe
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVV 218 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 218 (904)
.+++|.+..++.+...+..+.. +.+.++|+.|+||||+|+.+++...... ..|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4679999999999999987654 5578999999999999999998651100 01112222222
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 219 SKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR-SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
.....+++ ..++...+.. -..+++-++|+|+++.. ..+..+...+. .....+.+|+
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFIL 154 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEE
Confidence 11111111 1112222211 12456779999999743 34555555554 3344565654
Q ss_pred -Eecchhhh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch-hHHHHHHH
Q 037222 296 -ATRFIDVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP-LALITIGR 364 (904)
Q Consensus 296 -TtR~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 364 (904)
||....+. ........+++.+++.++....+.+.+...... --++....|++.++|.+ -|+..+-.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 54444443 223346789999999999888888765432211 12345678999999966 45544443
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=1.4e-05 Score=82.12 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=98.8
Q ss_pred ccccchHH-HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQS-QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+. .+..+.++........+.|+|+.|+|||+|++.+++.. . ..-..+.|+.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHHHhh-------------
Confidence 34456433 33444444434455689999999999999999999876 2 2223456665542100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc---ccccccc-CCCCCCCCCC-cEEEEEecchh---------h
Q 037222 237 LSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER---VDLTKVG-VPLPGPQNTT-SKVVFATRFID---------V 302 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~~~-~~l~~~~~~g-s~IivTtR~~~---------v 302 (904)
...+ +.+.+.. --++++||+... ..|+... ..+......| .++|+||+... +
T Consensus 87 ---------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011 1111211 237899999642 3343221 1111011123 47999998542 2
Q ss_pred hccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 303 CGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 303 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
...+....++++++++.++-.+++.+++....... -+++..-|++.+.|..-++..+
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHH
Confidence 33344557899999999999999988664332122 2456677888887765554443
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=3.8e-05 Score=76.18 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=94.1
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC--------------------CCCCEEEEEEec-CCCCHHH
Q 037222 169 QVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP--------------------TNFDCVIWVVVS-KDLRLEK 226 (904)
Q Consensus 169 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~vs-~~~~~~~ 226 (904)
.+.+.+..+.. ..+.++|+.|+||||+|+.+..... -. .+.|.. ++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~-~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL-CEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHH
Confidence 45556665555 6788999999999999999988862 11 122222 22111 1111111
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhh
Q 037222 227 IQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVC 303 (904)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~ 303 (904)
.+++.+.+... -..+.+-++|+||++.. ..++.+...+. .....+.+|++|++. .+.
T Consensus 81 -i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 81 -VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred -HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCh
Confidence 11122222110 01245668999999653 33555555554 344456677777643 222
Q ss_pred cc-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhH
Q 037222 304 GS-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLA 358 (904)
Q Consensus 304 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (904)
.. ......+++.+++.++..+.+.+. + - + .+.+..|++.++|.|..
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ-G-I----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc-C-C----C---HHHHHHHHHHcCCCccc
Confidence 21 223468999999999999888776 2 1 1 35688999999998853
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.19 E-value=4e-06 Score=89.19 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=66.7
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCC
Q 037222 169 QVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQDDIGKKIGLSDDSWKNK 245 (904)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~ 245 (904)
++++++.. +.-...+|+|++|+||||||+++|+.. . ..+|+.++||.+++.. ++.++++.|...+-... ++..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 44555543 345678899999999999999999998 3 3499999999999887 77888888864322111 1222
Q ss_pred CHHHHH-----HHHHHH--HcCCcEEEEecccc
Q 037222 246 SFEEKA-----VDILRS--LGEKRFVLLLDDLW 271 (904)
Q Consensus 246 ~~~~~~-----~~l~~~--l~~~r~LlVlDdv~ 271 (904)
...+.. -...+. -.|+..+|++|++.
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 211111 111122 26899999999995
No 90
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=3.6e-06 Score=99.18 Aligned_cols=105 Identities=24% Similarity=0.330 Sum_probs=76.1
Q ss_pred CceEEEeecCcccc-cccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCccc-ccchhhhcCCCCcEe
Q 037222 540 DLLTLFLDFNEELE-MIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQ-ELPEELKLLVNLKCL 617 (904)
Q Consensus 540 ~L~~L~l~~~~~l~-~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~-~Lp~~~~~L~~L~~L 617 (904)
.++.|+++ ++.+. .+|.. +..+++|++|+|++| .+.+.+|..++.+.+|++|+|++|.+. .+|..+++|++|++|
T Consensus 419 ~v~~L~L~-~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLD-NQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECC-CCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 36777777 44444 44444 778888888888888 777678888888888888888888776 678888888888888
Q ss_pred eccccccccccchhhhcC-CCCCceeeecccC
Q 037222 618 NLRWTSKLIRIPRQLISN-SSGLRVLRMFATG 648 (904)
Q Consensus 618 ~l~~~~~l~~lp~~~i~~-L~~L~~L~l~~~~ 648 (904)
+|++|.....+|.. ++. +.++..+++.+|.
T Consensus 496 ~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChH-HhhccccCceEEecCCc
Confidence 88888544467765 444 3456677776654
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2.1e-05 Score=90.81 Aligned_cols=192 Identities=16% Similarity=0.126 Sum_probs=108.7
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.++||.+..+..|...+..+.. +.+.++|..|+||||+|+.+++... -...+. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 4689999999999999987665 4468999999999999999988762 111000 000111122222221100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEec-chhhh-c
Q 037222 237 LSD---DSWKNKSFEEKAVDILRS-----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATR-FIDVC-G 304 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR-~~~v~-~ 304 (904)
... +.......++. +.+.+. ..+++-++|+|+++.. .....+...+. ......++|++|. ...+. .
T Consensus 88 ~D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchH
Confidence 000 00001112221 122221 2466779999999753 33444444443 2333455555444 44443 2
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.......|++++++.++....+.+.+...... -..+..+.|++.++|.+--+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 23346789999999999999998876332211 12345678999999987644433
No 92
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.15 E-value=3.5e-05 Score=75.67 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=88.6
Q ss_pred ccccchHHHHHHHHHHHh-----cCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLV-----EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
.+|||.+.-++.+.-++. ++...-+.+||++|+||||||.-+++.. ...|. ++ |.+ ..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~--sg~-~i~------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---IT--SGP-AIE------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EE--ECC-C---------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---ec--cch-hhh-------
Confidence 468999888777655443 1346678899999999999999999987 33442 22 211 000
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--c--c-----cccccC-CCCCCC----------CCCcE
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--V--D-----LTKVGV-PLPGPQ----------NTTSK 292 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~--~-----~~~~~~-~l~~~~----------~~gs~ 292 (904)
...+++..+. .+ +++-+|.+|+++.- . + .+.... .+-+.+ .+=+-
T Consensus 88 -------------k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 -------------KAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -------------hHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 0111111111 12 23456777887631 0 0 111100 000000 11234
Q ss_pred EEEEecchhhhccccC-C-ceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHH
Q 037222 293 VVFATRFIDVCGSMEA-D-RKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGR 364 (904)
Q Consensus 293 IivTtR~~~v~~~~~~-~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 364 (904)
|=.|||...+..-+.. . -..+++..+.+|-.++..+.+..... +-.++.+.+|++.|.|-|--+.-+-+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 4568886555433322 2 34589999999999999888754331 22356789999999999965544433
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.14 E-value=2.7e-05 Score=79.86 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=89.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
...+.|+|..|+|||.|++.+++.. .. .-..++|++.. ++... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~~--~~~~v~y~~~~------~~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-EQ--RGEPAVYLPLA------ELLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-Hh--CCCcEEEeeHH------HHHhh--------------------hHHHHHhh
Confidence 3678999999999999999998876 21 12346777543 22111 01222333
Q ss_pred cCCcEEEEecccccc---ccccc-ccCCCCCCCCCCcEEEEEecchhh-h--------ccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWER---VDLTK-VGVPLPGPQNTTSKVVFATRFIDV-C--------GSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~IivTtR~~~v-~--------~~~~~~~~~~l~~L~~~e~~~L 325 (904)
++-. ++|+||+... ..|+. +...+......|..||+|++...- . ..+.....+++++++.++-...
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3322 6789999632 34433 222221112346678888875322 1 1122346789999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+.+++.......+ +++..-|++.+.|..-++..+-
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 9866643221222 4667778888877655554433
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=7.5e-05 Score=82.59 Aligned_cols=182 Identities=13% Similarity=0.155 Sum_probs=108.2
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccC-C------------------CCCCEEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES-P------------------TNFDCVIWVV 217 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 217 (904)
..++|.+..++.+.+++..+.. +.+.++|++|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4679999999999999987654 467899999999999999998775110 0 12222 2222
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
.+...... -.+++...+... -..+++-++|+|++... .....+...+. .....+.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEE
Confidence 11111111 111222221110 01234558899998643 33444444443 3334566666
Q ss_pred Eecchh-hhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 296 ATRFID-VCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 296 TtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+|.+.. +.. .......+++.+++.++....+...+.......+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 665443 222 2223467889999999999998887743321111 3567789999999886654443
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.2e-05 Score=87.90 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=107.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++... -.. |... ..++.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 4679999999999999877544 4688999999999999999988762 111 1110 01111111122211110
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhhc-
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVCG- 304 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~~- 304 (904)
... +.......++. +.+.+.. .+++-++|+|+++.. ..+..+...+. .....+.+|++| ....+..
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHH
Confidence 000 00000111111 1121111 234447999999753 34555555443 223345555444 4434422
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITIGR 364 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 364 (904)
.......+++.+++.++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2334578999999999999988887643321121 3456789999999664 4444443
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=3.6e-05 Score=83.33 Aligned_cols=196 Identities=11% Similarity=0.073 Sum_probs=111.8
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC-CCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l 235 (904)
..++|.+.....+...+..+.. ..+.|+|+.|+||||+|..+........ ..+... ............+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 5689999999999999987654 4688999999999999999988872100 001111 0011111112333333221
Q ss_pred -------CCCCCC----C-CCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcE-EEE
Q 037222 236 -------GLSDDS----W-KNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSK-VVF 295 (904)
Q Consensus 236 -------~~~~~~----~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~-Iiv 295 (904)
..+.+. . ..-..++ ++.+.+++ .+++-++|+|+++.. .....+...+. ....+.. |++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEEEE
Confidence 000000 0 1112233 33444444 356779999999753 22333433333 2223344 445
Q ss_pred Eecchhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 296 ATRFIDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 296 TtR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
|++...+.. .......+++.+++.++...++.+..... . -..+....+++.++|.|..+..+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544433322 22344689999999999999998743211 1 113456789999999998765443
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.1e-05 Score=86.81 Aligned_cols=194 Identities=15% Similarity=0.147 Sum_probs=108.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCC--CEEEEEEecCCCCHHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNF--DCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.++||-+..+..|.+++..+.. ..+.++|+.|+||||+|+.+.+... -.... ...-. ..++.-...+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 4679999999999999987665 5678999999999999999977651 10000 00000 001111111222110
Q ss_pred hCCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhh
Q 037222 235 IGLSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVC 303 (904)
Q Consensus 235 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~ 303 (904)
-.... +.......++.. .+.+.. .++.-++|||+++.. ..+..+...+. ......++|++| ....+.
T Consensus 91 ~h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhh
Confidence 00000 000111122221 121221 244558999999853 34555555554 334455666555 433442
Q ss_pred -ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 304 -GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 304 -~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
........+++++++.++....+.+.+....... ..+....|++.++|.+--+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2234467899999999999999988775433121 235567889999997754433
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.11 E-value=2.8e-05 Score=78.71 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
...+.|+|..|+|||.|++++++... ....-..++|+ +..++...+...+... . ...+.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~-~~~~~~~v~y~------~~~~f~~~~~~~~~~~-------~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQ-KQHPGKRVVYL------SAEEFIREFADALRDG-------E----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH-HHCTTS-EEEE------EHHHHHHHHHHHHHTT-------S----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH-hccccccceee------cHHHHHHHHHHHHHcc-------c----chhhhhhh
Confidence 45689999999999999999999872 11122246666 3556666666655321 1 22344444
Q ss_pred cCCcEEEEecccccc---ccccc-ccCCCCCCCCCCcEEEEEecchhh---------hccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWER---VDLTK-VGVPLPGPQNTTSKVVFATRFIDV---------CGSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L 325 (904)
+ .-=+|++||++.- ..|.+ +...+......|-+||+|++...- ...+.....+++++++.++-..+
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3447889999753 22322 111111011346689999965321 22334556899999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
+.+.+....... -++++.-|++.+.+..-.+.
T Consensus 175 l~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERGIEL---PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHH
Confidence 999886543222 24556666666655544433
No 99
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=4.7e-07 Score=92.52 Aligned_cols=190 Identities=19% Similarity=0.117 Sum_probs=98.1
Q ss_pred cccCcEeecccCccc-----ccchhhhcCCCCcEeeccccccccccchhh-------------hcCCCCCceeeecccCC
Q 037222 588 LGSLELFDISRTEIQ-----ELPEELKLLVNLKCLNLRWTSKLIRIPRQL-------------ISNSSGLRVLRMFATGY 649 (904)
Q Consensus 588 L~~L~~L~l~~~~i~-----~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~-------------i~~L~~L~~L~l~~~~~ 649 (904)
.++|++||||.|-+. .+-.-+..++.|++|+|.+| .+.....+. +.+-++|+.+....|..
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 345666666665331 22233455667777777766 333221111 23345677777776655
Q ss_pred cccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchh--hHHHhhhcccccccceeeEecccCCC--cchhhhhhhc
Q 037222 650 ECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQ--ALQIFLSSNKLKSCIRSLFLQLAGDT--KSIIDAAAFA 725 (904)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~--~~~~~~~~l~ 725 (904)
...+ ....-..+...+.|+.+.++.+... ....+......+++|+.|+|.++.-. ....+...++
T Consensus 170 en~g-----------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 170 ENGG-----------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred cccc-----------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 4311 1112334455567777776655432 22333344445677888888776422 2333335677
Q ss_pred ccCccCceeecccCCccee---eeccccccccccCCcccCCccEEeEeccCCCCc----C-cccccCCCccEEeEecCcc
Q 037222 726 DLNHLNELYIYEGIELEEL---KIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD----V-TFLVFAPNLKSLELLQCDA 797 (904)
Q Consensus 726 ~~~~L~~L~l~~~~~l~~l---~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~----l-~~l~~l~~L~~L~L~~c~~ 797 (904)
.+++|++|++++|..-..- +.+.+. ...|+|+.|.+.+|..-.+ + ..+...|.|+.|+|++|..
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~--------~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALK--------ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHh--------ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7788888888877421100 011111 2367777777777742111 1 1234466777777776543
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.6e-05 Score=88.34 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=106.0
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH--
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK-- 234 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-- 234 (904)
.+++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+.+.. .-..... +..+.. -...+.|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~---~~pCg~----C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQH---GEPCGV----CQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCC---CCCCcc----cHHHHHHhccCc
Confidence 4689999999999999987664 567999999999999999998875 1111100 000000 0000011000
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHH----HHcCCcEEEEeccccccc--ccccccCCCCCCCCCCcEEEEEecch-hhh-
Q 037222 235 ---IGLSDDSWKNKSFEEKAVDILR----SLGEKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVVFATRFI-DVC- 303 (904)
Q Consensus 235 ---l~~~~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IivTtR~~-~v~- 303 (904)
+.... ......+...+.+.. -..+++-++|+|++.... ....+...+. .....+++|++|.+. .+.
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEEEeCCccccch
Confidence 00000 011111111111111 113566789999996532 2333444443 223456677666543 332
Q ss_pred ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 304 GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 304 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
...+....+.+.+++.++....+.+.+....... -.+..+.|++.++|.+.-+..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHH
Confidence 1123446788999999999999988775433221 234668899999998854433
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.7e-05 Score=86.67 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=106.5
Q ss_pred ccccchHHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCCEEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPT-------------------NFDCVIWVV 217 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 217 (904)
.++||-+..++.+.+++..+... .+.++|+.|+||||+|+.+++... -.. .|.-.+.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 46799999999999999876554 578999999999999999988761 111 111122222
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
.+....++++ +++++.+... -..++.-++|+|+++.. .....+...+. .....+++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEE
Confidence 2222222221 1222222110 11356678999999753 33444444443 3334566666
Q ss_pred Eecc-hhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 296 ATRF-IDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 296 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
+|.+ ..+.. .......+++++++.++....+.+.+....... ..+....|++.++|.+--+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 5543 33322 223456789999999998887777664332111 13445678899999875443
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.09 E-value=2.5e-05 Score=80.18 Aligned_cols=169 Identities=13% Similarity=0.069 Sum_probs=94.6
Q ss_pred cchHHHH-HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 037222 161 VGLQSQL-EQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 161 vGr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (904)
.|.+... ..+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... .. +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~----~--- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LA----F--- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HH----H---
Confidence 3554443 334443332 3456788999999999999999998761 1222 34455433210 00 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccc--cccccCCCCCCCCCCc-EEEEEecchhhhc--------ccc
Q 037222 239 DDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVD--LTKVGVPLPGPQNTTS-KVVFATRFIDVCG--------SME 307 (904)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs-~IivTtR~~~v~~--------~~~ 307 (904)
... ...-++|+||+..... -..+...+......+. .||+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 2334788999964322 1222222220112334 4666666433211 222
Q ss_pred CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHH
Q 037222 308 ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAM 366 (904)
Q Consensus 308 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (904)
....+++.+++.++-..++.+.+....... -++..+.+++.+.|.+..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 246889999999887777776543222112 24567788888999998887766555
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.09 E-value=1.2e-05 Score=88.72 Aligned_cols=171 Identities=20% Similarity=0.262 Sum_probs=99.6
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|++..+++|.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4689999999999887642 124568899999999999999999986 2333 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc----------------ccccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV----------------DLTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------------~~~~~~~~l~~-~ 286 (904)
..+.... ++ ........+.+.. ...+.+|++||++... .+..+...+.+ .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 1112222232222 3467899999996421 01112111110 1
Q ss_pred CCCCcEEEEEecchhhhc-cc----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCG-SM----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+.+||.||....... .+ .-...+++...+.++..++|..++........-. ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 234677888887543321 11 1245789999999999999998875443222122 346777777764
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=8.5e-05 Score=83.19 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=107.8
Q ss_pred ccccchHHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCCEEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLES-------------------PTNFDCVIWVV 217 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~~f~~~~wv~ 217 (904)
.++||.+..++.+.+.+..+... .+.++|+.|+||||+|+.++....-. ..+.| ++.+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEEEe
Confidence 46799999999888888877654 78899999999999999998753100 01112 23333
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
.+....++++ ++|++..... -..+++-++|+|+++.- .....+...+. .....+++|+
T Consensus 92 aas~~~vddI-R~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIl 151 (491)
T PRK14964 92 AASNTSVDDI-KVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFIL 151 (491)
T ss_pred cccCCCHHHH-HHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEE
Confidence 3222222221 1122211100 01245668999999743 33445544454 3344566666
Q ss_pred Eec-chhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 296 ATR-FIDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 296 TtR-~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
+|. ...+.. .......+++.+++.++....+.+.+....... -++....|++.++|.+-.+
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 554 344432 233457899999999999999988875433111 2345678999999877543
No 105
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=9.5e-06 Score=85.79 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=180.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
..+-+.++|.|||||||++-++.. . ...| +.+.++....-.+...+.-.+...++.+.. +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 457899999999999999999998 4 3455 456666666656666666666666776542 22344556777
Q ss_pred HHcCCcEEEEecccccccc-cccccCCCCCCCCCCcEEEEEecchhhhccccCCceeecccCCHH-HHHHHHHHhhCccc
Q 037222 257 SLGEKRFVLLLDDLWERVD-LTKVGVPLPGPQNTTSKVVFATRFIDVCGSMEADRKFLVACLSEK-DAWELFREKVGEET 334 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~~~~~-~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 334 (904)
...++|.++|+||..+..+ -..+...+. .+...-.|+.|+|.... +.....+.+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7889999999999865322 011111111 22334568888885433 223456777888764 78899887763221
Q ss_pred --cCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHH---HHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCc
Q 037222 335 --LQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAE---EWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQN 409 (904)
Q Consensus 335 --~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~---~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~ 409 (904)
......-.....+|.++.+|.|++|...++..++-...+ ...+-+..+.........-+......+..||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 112223356678999999999999999888776632211 111111112221111111124577788999999998
Q ss_pred hhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHHHHHHhcccccc---cCCeeehhhHHHHHH
Q 037222 410 ETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVGTLIHACLLEGI---EDDRVKMHDVVRDMA 486 (904)
Q Consensus 410 ~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a 486 (904)
..+--|-.++.|...|... ...|.+.|-... .........+..+++.+++..- ....|+.-+-+|.++
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7888888888888776554 234544442210 1223334446678888887643 345666666677776
Q ss_pred HHHHhh
Q 037222 487 LWIACE 492 (904)
Q Consensus 487 ~~i~~~ 492 (904)
...-.+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 655544
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=3.6e-05 Score=85.69 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=110.2
Q ss_pred ccccchHHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE-ecCCCCHHHHHHHHHHHh
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VSKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l 235 (904)
..++|.+..++.+..++..+.+. .+.++|+.|+||||+|+.+++... -....+...|.. +......=...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46799999999999998876654 588999999999999999988762 111111111110 000111111111111111
Q ss_pred CCCCCCC---CCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhhc
Q 037222 236 GLSDDSW---KNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVCG 304 (904)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~~ 304 (904)
......+ .....++.. .+.+.+ .+++-++|+|+++.. ..+..+...+. .....+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHH
Confidence 1000000 111122222 222333 245568899999753 35666655554 344456666555 4344432
Q ss_pred c-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHH
Q 037222 305 S-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITI 362 (904)
Q Consensus 305 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (904)
. ......+++.+++.++....+...+...... --.+.+..|++.++|.+- |+..+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2234578999999999988888776432211 124567889999999775 44433
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00018 Score=82.47 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=111.2
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++... -....+. ..++.=...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 467999888888888887765 46788899999999999999998862 1111100 00111111111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecc-hhhhcc
Q 037222 237 LSD---DSWKNKSFEEKAVDILRS-----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRF-IDVCGS 305 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~~v~~~ 305 (904)
... +.......++. +.+.+. ..+++-++|+|+++.. .....+...+. .......+|++|.. ..+...
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHH
Confidence 000 00001111111 112222 2356679999999753 33455555553 22234555555544 444322
Q ss_pred -ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch-hHHHHHHHHHh
Q 037222 306 -MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP-LALITIGRAMA 367 (904)
Q Consensus 306 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l~ 367 (904)
......+++++++.++....+.+.+....... ..+.++.|++.++|.+ .|+..+..++.
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23346889999999999998888664332111 2456778999999965 67777765543
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00014 Score=80.59 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=104.8
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccC-----CCCCCEEE-EEEecCCCCHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES-----PTNFDCVI-WVVVSKDLRLEKIQDD 230 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~vs~~~~~~~~~~~ 230 (904)
.+++|.+..++.+.+++..+.. +.+.++|++|+||||+|+.+.+..... ...|...+ -+......+..+ ..+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 4579999999999999987654 578899999999999999998876210 11122111 111011111111 112
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhhc-cc
Q 037222 231 IGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVCG-SM 306 (904)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~~-~~ 306 (904)
+.+++... -..+++-++|+|++... ..+..+...+. .....+.+|++| +...+.. ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHH
Confidence 22211100 01234558999998643 23455544443 223345555555 3333322 22
Q ss_pred cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHHH
Q 037222 307 EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITIG 363 (904)
Q Consensus 307 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (904)
.....+++++++.++....+.+.+.......+ .+....+++.++|.+- |+..+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 33457899999999999988887754332222 3567788888998654 333333
No 109
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.00033 Score=75.12 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=122.7
Q ss_pred cccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
+..++||+.++..+.+|+.. ...+-+.|.|.+|.|||.+...++.+....... -.++++.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45789999999999999864 456789999999999999999999987211112 2557777665556677777777
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCC--cEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchhh--hc--
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEK--RFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFIDV--CG-- 304 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~v--~~-- 304 (904)
..+--... ......+....+.....+. .+|+|+|..+.- ..-..+...|....-.++++|+---...+ .+
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 76611110 1122255666676666543 689999998641 11111111111122345665543221111 10
Q ss_pred -------cccCCceeecccCCHHHHHHHHHHhhCcccc--CCCccHHHHHHHHHHHhCCchhHHHHHHHH
Q 037222 305 -------SMEADRKFLVACLSEKDAWELFREKVGEETL--QSHHDIVELAQIVAKECGGLPLALITIGRA 365 (904)
Q Consensus 305 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 365 (904)
.......+...|.+.++-.++|..+...... ..+..++-.|++++.-.|-+--|+-+.-++
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1123457888999999999999998754331 112234444444444445555555444433
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=2.3e-05 Score=84.05 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCCCHH--HH--
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKIQDDIGKKIGLSDDSWKNKSFE--EK-- 250 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~-- 250 (904)
+.-..++|+|++|+|||||++.+++.. . .++|+..+||.+.+. .++.++++.+...+-... ++..... ..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast--~d~p~~~~~~va~ 241 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPASRHVQVAE 241 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec--CCCChHHHHHHHH
Confidence 345678999999999999999999997 3 348999999999866 789999999865442221 1111111 11
Q ss_pred --HHHHHHH-HcCCcEEEEeccccc
Q 037222 251 --AVDILRS-LGEKRFVLLLDDLWE 272 (904)
Q Consensus 251 --~~~l~~~-l~~~r~LlVlDdv~~ 272 (904)
.+..... -+|++.+|++|++..
T Consensus 242 ~v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHHcCCCeEEEEEChhH
Confidence 1112222 268999999999953
No 111
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=1.3e-05 Score=94.63 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=74.1
Q ss_pred cccEEEeecCCCcccccCccccccccCcEeecccCccc-ccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceee
Q 037222 565 SLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQ-ELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLR 643 (904)
Q Consensus 565 ~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~-~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~ 643 (904)
.++.|+|+++ .+.+.+|..+++|++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. +++|++|++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence 4788999999 888889999999999999999999887 78999999999999999999443467875 89999999999
Q ss_pred ecccCCc
Q 037222 644 MFATGYE 650 (904)
Q Consensus 644 l~~~~~~ 650 (904)
+.+|.+.
T Consensus 497 Ls~N~l~ 503 (623)
T PLN03150 497 LNGNSLS 503 (623)
T ss_pred CcCCccc
Confidence 9988764
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00012 Score=84.71 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=109.9
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC--EEEEEEecCCCCHHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFD--CVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++... -..... ...+-.+ ..-.-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~c----g~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLC----GVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccC----cccHHHHHHhcC
Confidence 4689999999999999987654 4688999999999999999988762 111100 0000000 000111222211
Q ss_pred hCCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhh
Q 037222 235 IGLSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVC 303 (904)
Q Consensus 235 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~ 303 (904)
-.... +.......++. +.+.+.+ .+++-++|+|+++.. .....+...+. .-...+.+|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhh
Confidence 11000 00011112221 1222222 245568999999653 23444544443 333456666555 434443
Q ss_pred cc-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 304 GS-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 304 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.. ......+++.+++.++....+.+.+........ .+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 234568999999999999999887754321111 356778999999988655443
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=3.9e-05 Score=86.23 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
..-+.|+|..|+|||+|++.+.+.. .....--.++++ +..++...+...++... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYM------SGDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEE------EHHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 3568899999999999999999865 211112234555 34567777776664210 1223344444
Q ss_pred cCCcEEEEeccccccc---cc-ccccCCCCCCCCCCcEEEEEecch---------hhhccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWERV---DL-TKVGVPLPGPQNTTSKVVFATRFI---------DVCGSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 325 (904)
+ +.-+||+||+.... .+ +.+...+......|..||+|+... .+...+...-.+.+++++.++-..+
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34478899996421 12 223222211112345788887643 2223334456788999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+.+++...... ..--+++..-|++.++|.|-.+..+.
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988543211 12235678899999999997775554
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00016 Score=83.07 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=105.8
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCCEEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPT-------------------NFDCVIWVV 217 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 217 (904)
.+++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+..... -.. .|.-.+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 4679999999999999987655 4568999999999999999988761 110 111112222
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv 295 (904)
.+....+++ .+++++..... -..+++-++|+|+++.. .....+...+. .....+.+|+
T Consensus 95 ~~~~~~vd~-ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL 154 (527)
T PRK14969 95 AASNTQVDA-MRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFIL 154 (527)
T ss_pred ccccCCHHH-HHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEE
Confidence 111111111 11122111100 01356679999999753 23444444444 3334556665
Q ss_pred Eecc-hhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHH
Q 037222 296 ATRF-IDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITI 362 (904)
Q Consensus 296 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (904)
+|.+ ..+.. .......+++++++.++....+.+.+...... --.+..+.|++.++|.+- |+..+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5543 33321 12234688999999999998888776432211 123456788999999775 44443
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00015 Score=86.76 Aligned_cols=189 Identities=12% Similarity=0.072 Sum_probs=105.9
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.++||.+..++.|..++..+.+ +.+.++|+.|+||||+|+.+.+... -....... .+... ...+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~---pCg~C----~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTST---PCGEC----DSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCC---CCccc----HHHHHHHcCCC
Confidence 4679999999999999987665 4578999999999999999988772 11111000 00000 00111110000
Q ss_pred CCC-----CCCCCCCHHHHHHHHHH-----HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhh
Q 037222 237 LSD-----DSWKNKSFEEKAVDILR-----SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVC 303 (904)
Q Consensus 237 ~~~-----~~~~~~~~~~~~~~l~~-----~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~ 303 (904)
... +.......++.. .+.+ -..+++-++|||+++.. .....+...+. .-...+.+|++| ....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhh
Confidence 000 000011122211 1211 12355668899999753 34555555554 333455566555 444443
Q ss_pred c-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 304 G-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 304 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
. .......|++.+++.++...++.+.+....... -.+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 3 233457899999999999988888764332111 1345578899999987433
No 116
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=3.5e-05 Score=83.15 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=38.2
Q ss_pred cCCCcccEEEeecCCCcccccCccccccccCcEeecccC-cccccchhhhcCCCCcEeeccccccccccch
Q 037222 561 QFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT-EIQELPEELKLLVNLKCLNLRWTSKLIRIPR 630 (904)
Q Consensus 561 ~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~-~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~ 630 (904)
..++++++|++++| .++ .+|. --.+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c-~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDC-DIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCC-CCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 34566777777777 666 6662 1234667777665 5566665442 4677777777655555554
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.2e-05 Score=57.57 Aligned_cols=39 Identities=41% Similarity=0.566 Sum_probs=22.2
Q ss_pred cCcEeecccCcccccchhhhcCCCCcEeeccccccccccc
Q 037222 590 SLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIP 629 (904)
Q Consensus 590 ~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp 629 (904)
+|++|++++|+|+.+|..+++|++|++|++++| .++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 456666666666666655666666666666666 455544
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=0.00013 Score=88.53 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=102.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEE-EEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIW-VVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~w-v~vs~~~~~~~~~~~i~ 232 (904)
..++||+.++.+++..|......-+.++|.+|+||||+|+.++... ..... .+..+| +.++. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i-~~~~v~~~l~~~~i~~l~l~~------l----- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI-AAGDVPPALRNVRLLSLDLGL------L----- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH-hhCCCCccccCCeEEEeehhh------h-----
Confidence 4579999999999999987666667799999999999999999886 21111 123333 22111 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc-------ccc--cccCCCCCCCCCCcEEEEEecchh
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV-------DLT--KVGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-------~~~--~~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
.... . .....+.....+...+. +++.+|++|+++.-. .-+ .+..+.. ....-++|-||...+
T Consensus 255 ---~ag~-~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 255 ---QAGA-S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAE 327 (852)
T ss_pred ---hccc-c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHH
Confidence 0000 0 11223333333433332 468999999997531 111 1222221 223456776776543
Q ss_pred hhc-------cccCCceeecccCCHHHHHHHHHHhhCcccc-CCCccHHHHHHHHHHHhCCch
Q 037222 302 VCG-------SMEADRKFLVACLSEKDAWELFREKVGEETL-QSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 302 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlP 356 (904)
... .......+.+++++.+++.+++......... ..-.-..+....+++.+.+..
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 321 1123468999999999999997554422110 000112344566777776543
No 119
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=6e-06 Score=96.87 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=55.3
Q ss_pred CCceEEEeecCccc-ccccchhhcCCCcccEEEeecCCCcc-cccCccccccccCcEeecccCcccccchhhhcCCCCcE
Q 037222 539 PDLLTLFLDFNEEL-EMIADGFFQFMPSLKVLKISNCGNFT-FQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKC 616 (904)
Q Consensus 539 ~~L~~L~l~~~~~l-~~~~~~~~~~l~~Lr~L~l~~~~~i~-~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~ 616 (904)
.+|+.|+++|...+ ...+..+-..+|.|+.|.+++- .+. +.+-.-..++++|..||+|+|+++.+ .++++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 45666666653332 2233343445666666666665 332 11122233566666666666666666 56666666666
Q ss_pred eeccccccccccc-hhhhcCCCCCceeeeccc
Q 037222 617 LNLRWTSKLIRIP-RQLISNSSGLRVLRMFAT 647 (904)
Q Consensus 617 L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~ 647 (904)
|.+++- .+..-+ -..+-+|++|+.|+++..
T Consensus 200 L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNL-EFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCC-CCCchhhHHHHhcccCCCeeecccc
Confidence 666543 222211 011445666666666644
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.90 E-value=0.0001 Score=77.29 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=80.1
Q ss_pred cccchHHHHHHHHHH---Hh------c------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC
Q 037222 159 TVVGLQSQLEQVWRC---LV------E------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~---L~------~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 223 (904)
.++|.+..+++|.+. .. . ....-+.++|++|+||||+|+.+++.... ...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecH---
Confidence 478888777666543 21 0 13456789999999999999999886511 11111112333322
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc----------cccccccCCCCCCCCCCcEE
Q 037222 224 LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER----------VDLTKVGVPLPGPQNTTSKV 293 (904)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~----------~~~~~~~~~l~~~~~~gs~I 293 (904)
.++.. .. .... ......+.+... .-+|++|++..- .....+...+. .......+
T Consensus 83 -~~l~~----~~-------~g~~-~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~v 146 (261)
T TIGR02881 83 -ADLVG----EY-------IGHT-AQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVL 146 (261)
T ss_pred -HHhhh----hh-------ccch-HHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEE
Confidence 11111 10 0011 111112222212 348899999741 12233333333 22333355
Q ss_pred EEEecchhhhc-------cccC-CceeecccCCHHHHHHHHHHhhCcc
Q 037222 294 VFATRFIDVCG-------SMEA-DRKFLVACLSEKDAWELFREKVGEE 333 (904)
Q Consensus 294 ivTtR~~~v~~-------~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~ 333 (904)
|+++...+... .... ...+++++++.+|-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55654433211 1111 2468899999999999998887543
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.89 E-value=0.0002 Score=75.58 Aligned_cols=132 Identities=15% Similarity=0.075 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE 260 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 260 (904)
-+.++|++|+||||+|+.++..... .......-|+.++. .++ ...+... ..... ..+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l----~~~~~g~-------~~~~~-~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDL----VGQYIGH-------TAPKT-KEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHH----hHhhccc-------chHHH-HHHHHHc--
Confidence 5789999999999999888776521 12221122444442 122 2221111 11111 2222222
Q ss_pred CcEEEEecccccc-----------cccccccCCCCCCCCCCcEEEEEecchhhhcccc--------CCceeecccCCHHH
Q 037222 261 KRFVLLLDDLWER-----------VDLTKVGVPLPGPQNTTSKVVFATRFIDVCGSME--------ADRKFLVACLSEKD 321 (904)
Q Consensus 261 ~r~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~--------~~~~~~l~~L~~~e 321 (904)
..-+|+||++..- ..+..+...+. ....+.+||+++.......... -...+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2358889999621 11233344443 3445567777765432211111 13578999999999
Q ss_pred HHHHHHHhhCc
Q 037222 322 AWELFREKVGE 332 (904)
Q Consensus 322 ~~~Lf~~~~~~ 332 (904)
-..++...+..
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99998887743
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00026 Score=81.37 Aligned_cols=198 Identities=13% Similarity=0.076 Sum_probs=109.1
Q ss_pred ccccchHHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..++.|..++..+... .+.++|+.|+||||+|+.++.... -....+ +-.+.. =...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~---~~pCg~----C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPT---ATPCGV----CESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCC---CCcccc----cHHHHHhhcccC
Confidence 46899999999999999876654 568999999999999999998762 111100 000000 001111110000
Q ss_pred CCC-----CCCCCCCHHH---HHHHHHH-HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE-Eecchhhhc
Q 037222 237 LSD-----DSWKNKSFEE---KAVDILR-SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF-ATRFIDVCG 304 (904)
Q Consensus 237 ~~~-----~~~~~~~~~~---~~~~l~~-~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv-TtR~~~v~~ 304 (904)
... +.......++ +.+.+.. -..+++-++|+|+++.. .....+...+. .......+|+ ||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhHH
Confidence 000 0000111111 1111111 11345668999999743 34445544554 3334555555 444444432
Q ss_pred -cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHHHHHHh
Q 037222 305 -SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITIGRAMA 367 (904)
Q Consensus 305 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l~ 367 (904)
.......+++.+++.++..+.+.+.+....... -.+....|++.++|.+- |+..+-.++.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 233467899999999999988887764332111 13456778999999774 5555544443
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=0.00027 Score=78.38 Aligned_cols=171 Identities=19% Similarity=0.267 Sum_probs=98.7
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4678999999999887632 234568899999999999999999876 222 233221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc------------c----cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV------------D----LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 286 (904)
.++.. .. .. ........+.+.. ...+.+|++||++.-. . ...+...+.+ .
T Consensus 199 ~~l~~----~~-------~g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELVQ----KF-------IG-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHhH----hh-------cc-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 11111 10 00 1122233333333 3467899999997420 0 1111111110 1
Q ss_pred CCCCcEEEEEecchhhhc-cc----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCG-SM----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+..||.||...+... .+ .-...+++++.+.++-.++|+.++........-.+ ..+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 223567787877644321 11 12357899999999999999988754432222233 45666776653
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00025 Score=82.52 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=106.1
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+..+..+..++..+++ +.+.++|+.|+||||+|+.++.... ..+... .+-.+. ..... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln--C~~~~~-~~~pC~-------~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN--CSHKTD-LLEPCQ-------ECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc--ccccCC-CCCchh-------HHHHh---hc
Confidence 4679999999999999987654 5567999999999999999987751 111000 000000 00000 00
Q ss_pred CCCC-----CCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEE-EEecchhhh
Q 037222 237 LSDD-----SWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVV-FATRFIDVC 303 (904)
Q Consensus 237 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii-vTtR~~~v~ 303 (904)
...+ .......++ ++.+.+.+ .+++-++|+|+++.. ..+..+...+. .....+.+| +|++...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhh
Confidence 0000 000011111 22222222 356668999999743 34555554443 223344444 555545553
Q ss_pred c-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHHH
Q 037222 304 G-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITIG 363 (904)
Q Consensus 304 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (904)
. .......+++.+++.++....+...+....... -.+.+..|++.++|.+- |+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 233457899999999999988887654322111 13457789999999764 444433
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00026 Score=81.98 Aligned_cols=200 Identities=14% Similarity=0.143 Sum_probs=109.0
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE-ecCCCCHHHHHHHHHHHh
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VSKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l 235 (904)
..++|.+..+..+.+++..+.+ ..+.++|+.|+||||+|+.+++.. .-....+...|.. +...+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 4679999999999998887655 458899999999999999998876 2111111001110 001111111111111111
Q ss_pred CCCCCCC---CCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe-cchhhhc
Q 037222 236 GLSDDSW---KNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT-RFIDVCG 304 (904)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt-R~~~v~~ 304 (904)
......+ .....++... +.+.+ .+.+-++|+|+++.. .....+...+. .-...+.+|++| +...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhH
Confidence 1000000 1111222222 22222 345568899999753 33555555554 333345555444 4444432
Q ss_pred -cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHHH
Q 037222 305 -SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITIG 363 (904)
Q Consensus 305 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (904)
.......+++.+++.++....+.+.+....... -.+.+..|++.++|..- |+..+-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 233467899999999998888877664322111 24567889999999554 444443
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00032 Score=81.75 Aligned_cols=178 Identities=12% Similarity=0.144 Sum_probs=108.1
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcc--------------------cCCCCCCEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFL--------------------ESPTNFDCVIWV 216 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~--------------------~~~~~f~~~~wv 216 (904)
..++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+..... ....+|+.. .+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-EL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-Ee
Confidence 4689999999999999987765 4578999999999999999887651 011234322 22
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEE
Q 037222 217 VVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVV 294 (904)
Q Consensus 217 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii 294 (904)
..+....++++. ++++++.... ..+++=++|+|++..- ..+..+...+. .-..++.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEE
Confidence 222111222221 2222221110 1234558899998753 34555655554 333455655
Q ss_pred E-Eecchhhhcc-ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 295 F-ATRFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 295 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
+ ||+...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.+||..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5 4454444332 334578999999999999998887654332211 345778999999966433
No 127
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=1.7e-06 Score=97.42 Aligned_cols=104 Identities=26% Similarity=0.368 Sum_probs=43.9
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCc
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLK 615 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~ 615 (904)
..+.+|..|++. ++.+..+... +..|++|++|+++++ .|+ .+. .+..+..|+.|++++|.|..++ .+..+++|+
T Consensus 92 ~~~~~l~~l~l~-~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~-~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLY-DNKIEKIENL-LSSLVNLQVLDLSFN-KIT-KLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLK 165 (414)
T ss_pred ccccceeeeecc-ccchhhcccc-hhhhhcchheecccc-ccc-ccc-chhhccchhhheeccCcchhcc-CCccchhhh
Confidence 444444444444 3334333322 334444444444444 444 332 3344444444444444444432 222344444
Q ss_pred Eeeccccccccccch-hhhcCCCCCceeeeccc
Q 037222 616 CLNLRWTSKLIRIPR-QLISNSSGLRVLRMFAT 647 (904)
Q Consensus 616 ~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~ 647 (904)
.+++++| .+..++. . ...+.+|+.+.+.+|
T Consensus 166 ~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 166 LLDLSYN-RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence 4444444 3333332 1 134444444444444
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00036 Score=81.56 Aligned_cols=193 Identities=15% Similarity=0.144 Sum_probs=109.7
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++.. ....... ....++.-...+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999998887654 456899999999999999999876 1111000 0001111222333332221
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecc-hhhhc-
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRF-IDVCG- 304 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~~v~~- 304 (904)
... +.......++. +.+.+.+ .+++-++|+|+++.. ...+.+...+. .....+.+|++|.. ..+..
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHH
Confidence 100 00001112221 2222222 245668999999643 33455544444 33345566665543 33322
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1223467889999999999888887754331221 356778999999988655443
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.86 E-value=0.00024 Score=74.94 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE 260 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 260 (904)
.+.++|++|+||||+|+.+++.. .....-...-|+.++. .++. ...... ..... ..+.+..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l~----~~~~g~-------~~~~~-~~~l~~a-- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDLV----GQYIGH-------TAPKT-KEVLKKA-- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHHH----HHHhcc-------chHHH-HHHHHHc--
Confidence 47889999999999999998865 1111111112444441 2222 211100 11111 1222222
Q ss_pred CcEEEEecccccc-----------cccccccCCCCCCCCCCcEEEEEecchhhhccc--------cCCceeecccCCHHH
Q 037222 261 KRFVLLLDDLWER-----------VDLTKVGVPLPGPQNTTSKVVFATRFIDVCGSM--------EADRKFLVACLSEKD 321 (904)
Q Consensus 261 ~r~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~e 321 (904)
..-+|++|++..- .....+...+. ....+.+||+++....+.... .-...+++++++.+|
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2248999999641 11222333343 334456777777644332111 123478999999999
Q ss_pred HHHHHHHhhCc
Q 037222 322 AWELFREKVGE 332 (904)
Q Consensus 322 ~~~Lf~~~~~~ 332 (904)
..+++.+.+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998888754
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00049 Score=77.51 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=105.8
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC--------------------CCCCEEEEE
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP--------------------TNFDCVIWV 216 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv 216 (904)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... .+++. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEe
Confidence 4679999999999999987665 5678999999999999999988762100 01111 111
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEE
Q 037222 217 VVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVV 294 (904)
Q Consensus 217 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii 294 (904)
........+++ +++.+.+.. .-..+++-++|+|++... .....+...+. .......+|
T Consensus 96 ~g~~~~gid~i-r~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~I 155 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFF 155 (451)
T ss_pred eccccCCHHHH-HHHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEE
Confidence 10000011111 111111100 011356778999998643 23444444444 333456666
Q ss_pred EEecc-hhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch-hHHHHHH
Q 037222 295 FATRF-IDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP-LALITIG 363 (904)
Q Consensus 295 vTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~ 363 (904)
++|.. ..+.. .......+++.+++.++....+.+.+....... -.+.+..|++.++|.+ .|+..+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66643 33322 123456889999999999988887764322111 2456778999999966 4444443
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2.2e-06 Score=96.41 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=22.5
Q ss_pred ccEEeEeccCCCCcC-cccccCCCccEEeEecC
Q 037222 764 LHRVTIFSCGKLKDV-TFLVFAPNLKSLELLQC 795 (904)
Q Consensus 764 L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c 795 (904)
|+.+++.+++ +... ..+..+.++..|++.++
T Consensus 234 L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSGNR-ISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhcccCc-cccccccccccccccccchhhc
Confidence 8899999885 3333 45667788888888763
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00044 Score=78.36 Aligned_cols=193 Identities=12% Similarity=0.100 Sum_probs=106.6
Q ss_pred ccccchHHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|-+..++.+...+..+... +..++|+.|+||||+|+.+++... -....+. ..+..-.....+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~-c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV-CEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc-CCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 46799999999999999877654 568999999999999999887751 1110000 00000000000000000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH----HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhh-cc
Q 037222 237 LSD---DSWKNKSFEEKAVDILRS----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVC-GS 305 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~-~~ 305 (904)
... +.......++....+... ..+++-++|+|+++.. .....+...+. .....+++|++|.+. .+. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEEEEECChhhCchHH
Confidence 000 000001122222222110 1145568899999653 23444444443 333456767666543 222 12
Q ss_pred ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 306 MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 306 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
......+++.+++.++....+.+.+....... -.+.++.|++.++|.+--+..+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 23457899999999999998887765432111 2456788999999988554443
No 133
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.83 E-value=0.0007 Score=69.92 Aligned_cols=198 Identities=15% Similarity=0.098 Sum_probs=116.4
Q ss_pred cccchHH---HHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC----EEEEEEecCCCCHHHHH
Q 037222 159 TVVGLQS---QLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD----CVIWVVVSKDLRLEKIQ 228 (904)
Q Consensus 159 ~~vGr~~---~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~vs~~~~~~~~~ 228 (904)
.++|-.. .++++.+++.. ...+-+.|+|..|.|||++++++...+ .....-+ .++.|..-..++...+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4455433 34444444443 245679999999999999999999876 2221111 46777777888999999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC-CcEEEEecccccc-----cccccc---cCCCCCCCCCCcEEEEEecc
Q 037222 229 DDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE-KRFVLLLDDLWER-----VDLTKV---GVPLPGPQNTTSKVVFATRF 299 (904)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~-----~~~~~~---~~~l~~~~~~gs~IivTtR~ 299 (904)
..|+.+++.+.. ...............++. +-=+||+|++.+. ..-..+ ...+. ..-.-+-|.+-|+.
T Consensus 114 ~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 114 SAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccHH
Confidence 999999998764 233444444445555543 4558899999762 111111 11121 22234556677764
Q ss_pred hhhhccc-----cCCceeecccCCHHH-HHHHHHHhhCccc--cCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 300 IDVCGSM-----EADRKFLVACLSEKD-AWELFREKVGEET--LQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 300 ~~v~~~~-----~~~~~~~l~~L~~~e-~~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
---+-.. .....+.++....++ ...|+......-. ..+.-...++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 3222111 123466777766544 4445433222111 12233446899999999999864443
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.7e-05 Score=56.87 Aligned_cols=40 Identities=33% Similarity=0.532 Sum_probs=33.0
Q ss_pred CcccEEEeecCCCcccccCccccccccCcEeecccCcccccc
Q 037222 564 PSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELP 605 (904)
Q Consensus 564 ~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp 605 (904)
++|++|+++++ .|+ .+|..+++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N-~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47899999999 998 88888999999999999999888775
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.00029 Score=79.04 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
...+.|+|..|+|||+|++.+++.. .....-..++|++ ..++..++...+... ..+ .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVS------SEKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEE------HHHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 3568899999999999999999987 2211112456664 344555555555321 122 233333
Q ss_pred cCCcEEEEecccccccc---c-ccccCCCCCCCCCCcEEEEEecch-h--------hhccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWERVD---L-TKVGVPLPGPQNTTSKVVFATRFI-D--------VCGSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~IivTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~L 325 (904)
++ .-+|||||+..... + +.+...+......|..||+|+... . +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 34888999964211 1 122222210112345678877642 1 122233345789999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
+.+.+.......+ +++...|++.+.|..-.+
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 9998865432222 466777888888766543
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00047 Score=80.40 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=108.4
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.++.... ....+... ...+..-...+.|.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 4579999999999999887653 5778999999999999999998862 11111000 001111122233322211
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecc-hhhhc-
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRF-IDVCG- 304 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~~v~~- 304 (904)
... +.......+.. +.+.+.+ .+++-++|+|+++.. ..+..+...+. .-...+.+|++|.+ ..+..
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHH
Confidence 100 00011112222 2222222 245568899999753 34555555554 32334555554443 33322
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.......+++..++.++....+.+.+........ .+.+..|++.++|.+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2234567888999999988888776644321111 245778999999987655443
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=0.00017 Score=78.97 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=57.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQD 229 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 229 (904)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 3568889999999999874 3577789999999999999999987 4456788999999999888776654
No 138
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=8.9e-07 Score=98.25 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=101.7
Q ss_pred cccceeEEEeeccccccccCCCC-CCCceEEEeecCc-ccccccchh---hcC---CCcccEEEeecCCCcccccCcccc
Q 037222 515 ESENVTRLSLMQNQIKILSEVPT-CPDLLTLFLDFNE-ELEMIADGF---FQF---MPSLKVLKISNCGNFTFQLPLGMS 586 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~-~l~~~~~~~---~~~---l~~Lr~L~l~~~~~i~~~lp~~i~ 586 (904)
..+.+|+|.+.++.+.....+.. -..|+.|.....- .++++-..- |++ ...|.+-++++| .+. .+-.++.
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~-~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLV-LMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHH-hHHHHHH
Confidence 34688888888877655333211 2344555544110 011111000 111 224666677777 777 6677777
Q ss_pred ccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCc
Q 037222 587 KLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGE 666 (904)
Q Consensus 587 ~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 666 (904)
-+++|+.|||++|++...- .+..|++|++|||++| .+..+|.-....+. |+.|.+.+|...
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~---------------- 245 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT---------------- 245 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH----------------
Confidence 7888888888888777664 6777888888888887 67777752122333 788888776443
Q ss_pred cchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccC
Q 037222 667 VLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAG 713 (904)
Q Consensus 667 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 713 (904)
.+..+.+|.+|+.|+++.|-.....++..... +..|+.|.|.+++
T Consensus 246 -tL~gie~LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 -TLRGIENLKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhhHHhhhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCCc
Confidence 34445566667777776554443333322221 2466666666654
No 139
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00064 Score=77.06 Aligned_cols=177 Identities=12% Similarity=0.165 Sum_probs=103.7
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhccc--CCC----------------CCCEEEEEEe
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLE--SPT----------------NFDCVIWVVV 218 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------~f~~~~wv~v 218 (904)
..++|.+..+..+.+++..+.. +.+.++|+.|+||||+|+.++..... ... .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4579999999999999987654 45678999999999999999887510 000 0111111111
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCc
Q 037222 219 SKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTS 291 (904)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs 291 (904)
+.. ...++ ++.+.+.. .+++-++|+|+++.- .....+...+. ......
T Consensus 96 as~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~ 150 (486)
T PRK14953 96 ASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRT 150 (486)
T ss_pred ccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCe
Confidence 111 11111 11222222 356679999999743 23444444444 333344
Q ss_pred EEEEEe-cchhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 292 KVVFAT-RFIDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 292 ~IivTt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.+|++| +...+.. .......+.+.+++.++....+.+.+....... -.+.+..|++.++|.+-.+...
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 555544 4333322 223346889999999999988888764332111 2345677888999976554443
No 140
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0033 Score=63.34 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=95.8
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH--HHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKIQDD 230 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~ 230 (904)
.+|+|.++-++++.=++.. +..--+.++|++|.||||||.-+++.. .+ .+. +.+.+-+ ..=+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k------~tsGp~leK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK------ITSGPALEKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE------ecccccccChhhHHH
Confidence 4689999888887666653 346678999999999999999999987 22 221 1111100 001111
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc------------c------------cccccCCCCCC
Q 037222 231 IGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV------------D------------LTKVGVPLPGP 286 (904)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------------~------------~~~~~~~l~~~ 286 (904)
|+.. |+. .=++.+|.++.-. + -..+...+|
T Consensus 97 iLt~-----------------------Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp-- 150 (332)
T COG2255 97 ILTN-----------------------LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP-- 150 (332)
T ss_pred HHhc-----------------------CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC--
Confidence 1111 222 2244456664310 0 011111121
Q ss_pred CCCCcEEEEEecchhhhcccc--CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 287 QNTTSKVVFATRFIDVCGSME--ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+=+-|=-|||.-.+..-.. -..+.+++..+.+|-.+...+.+..-.... -++-+.+|++...|-|--+.-+-
T Consensus 151 --pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 151 --PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred --CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHH
Confidence 2233456888655433221 124678999999999999999885433222 24567899999999996544333
No 141
>PF14516 AAA_35: AAA-like domain
Probab=97.77 E-value=0.0025 Score=69.05 Aligned_cols=198 Identities=13% Similarity=0.158 Sum_probs=118.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-----CCHHHHH----
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-----LRLEKIQ---- 228 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~---- 228 (904)
+.+|.|...-+++.+.+.+. -..+.|.|+-.+|||||...+.+.. +. ..+ ..+++++..- .+.++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 55689986677777777653 4688999999999999999999887 32 333 4557776542 2455444
Q ss_pred HHHHHHhCCCCCC---C--CCCCHHHHHHHHHHHH---cCCcEEEEecccccccc--------------cccccCCCCCC
Q 037222 229 DDIGKKIGLSDDS---W--KNKSFEEKAVDILRSL---GEKRFVLLLDDLWERVD--------------LTKVGVPLPGP 286 (904)
Q Consensus 229 ~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~--------------~~~~~~~l~~~ 286 (904)
..|.++++....- + ...........+.+.+ .+++.+|++|+++...+ |..-+..-+
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~-- 164 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP-- 164 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc--
Confidence 4445555543210 0 0112222333344432 26899999999975311 222111111
Q ss_pred CCCCcEEEEEecchh--hh-cc----ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 287 QNTTSKVVFATRFID--VC-GS----MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 287 ~~~gs~IivTtR~~~--v~-~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
.-..-.+|...+.+ .. .. +.....++|++++.+|...|..+.-..-. ....++|...+||+|.-+
T Consensus 165 -~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 165 -IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred -ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHH
Confidence 01111222222111 11 11 11235789999999999999887642211 222789999999999999
Q ss_pred HHHHHHHhcC
Q 037222 360 ITIGRAMACK 369 (904)
Q Consensus 360 ~~~~~~l~~~ 369 (904)
..++..+..+
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999763
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00019 Score=80.65 Aligned_cols=179 Identities=18% Similarity=0.178 Sum_probs=103.4
Q ss_pred cccchHHHH--HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHHH
Q 037222 159 TVVGLQSQL--EQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 159 ~~vGr~~~~--~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.++|-.... ....+.... +...-+.|+|.+|+|||+|++.+++.. . ..+.+ .++|++ ..++..++...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~------~~~f~~~~~~~ 178 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYIT------SEKFLNDLVDS 178 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEE------HHHHHHHHHHH
Confidence 345754332 233333332 223469999999999999999999986 2 22333 466664 34566666665
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc---cc-ccccCCCCCCCCCCcEEEEEec-chhh-------
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV---DL-TKVGVPLPGPQNTTSKVVFATR-FIDV------- 302 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~IivTtR-~~~v------- 302 (904)
+... .. ..+.+.++.+.-+|++||+.... .+ +.+...+......|..||+||. ...-
T Consensus 179 ~~~~-------~~----~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKEG-------KL----NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred Hhcc-------cH----HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 5321 11 22333344456689999997421 11 1222222101123457888885 3221
Q ss_pred -hccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 303 -CGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 303 -~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
...+.....+.+++.+.++-..++.+.+.......+ +++...|++.+.|.--.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 122334557899999999999999988754332222 456778888887764433
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.75 E-value=0.00025 Score=71.45 Aligned_cols=133 Identities=10% Similarity=0.020 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG 259 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (904)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. .. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~~--------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------NE--------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------ch--------hHH-
Confidence 568999999999999999988765 11 1211 0000 00 011
Q ss_pred CCcEEEEecccccccc--cccccCCCCCCCCCCcEEEEEecchhh-------hccccCCceeecccCCHHHHHHHHHHhh
Q 037222 260 EKRFVLLLDDLWERVD--LTKVGVPLPGPQNTTSKVVFATRFIDV-------CGSMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 260 ~~r~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~IivTtR~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
+..-++++||+....+ +-.+...+. ..|..||+|++...- ...+.....+++++++.++-..++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1235788999963221 111111111 346689999885432 2223345589999999999888888877
Q ss_pred CccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 331 GEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 331 ~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
.......+ +++..-|++.+.|.--.+
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 53221121 456667777776654333
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.73 E-value=0.00027 Score=76.68 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=83.3
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...+..+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4679999999999999987654 566779999999999999998875 111 23343333 111111111111000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--c-ccccccCCCCCCCCCCcEEEEEecchhhh--ccccCCce
Q 037222 237 LSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--V-DLTKVGVPLPGPQNTTSKVVFATRFIDVC--GSMEADRK 311 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~-~~~~~~~~l~~~~~~gs~IivTtR~~~v~--~~~~~~~~ 311 (904)
. ..+.+.+-++|+||+... . ....+...+. ....++++|+||...... ........
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0 001234567899999643 1 1222332233 334567888888654311 11122346
Q ss_pred eecccCCHHHHHHHHHH
Q 037222 312 FLVACLSEKDAWELFRE 328 (904)
Q Consensus 312 ~~l~~L~~~e~~~Lf~~ 328 (904)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777766544
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.72 E-value=0.00017 Score=86.96 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=92.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..++||+.+++++++.|......-+.++|++|+|||++|+.++... ..... .+..+|.. +...+. .
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~-~~~~~p~~l~~~~~~~~-----~~~~l~----a 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI-AEGKVPENLKNAKIYSL-----DMGSLL----A 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCchhhcCCeEEEe-----cHHHHh----h
Confidence 3579999999999999887666667799999999999999999886 21111 13344431 111111 1
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc----------ccccc-cCCCCCCCCCCcEEEEEecchh
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV----------DLTKV-GVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------~~~~~-~~~l~~~~~~gs~IivTtR~~~ 301 (904)
... ...+.++....+.+.+ +.++.+|++|+++.-. +...+ ...+. ...-++|.+|...+
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEE 322 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHH
Confidence 000 1123444555555554 3468899999997321 11122 22222 12245555555433
Q ss_pred hhc-------cccCCceeecccCCHHHHHHHHHHhh
Q 037222 302 VCG-------SMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 302 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
... .......++++.++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 211 11234578999999999999998765
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.72 E-value=0.0002 Score=87.39 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=92.3
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCC---C-CCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 159 TVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPT---N-FDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~-f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.++||+++++++++.|......-+.++|++|+|||++|+.++... .... . -+..+|. + +...++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i-~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI-VNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH-HhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 479999999999999987655566799999999999999998886 2111 1 1244553 1 2222111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc---------ccccccCCCCCCCCCCcEEEEEecchhhhc
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV---------DLTKVGVPLPGPQNTTSKVVFATRFIDVCG 304 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~IivTtR~~~v~~ 304 (904)
+.. ...+.++....+.+.+ +.++.+|++|+++.-. +...+..+.. ....-++|.+|..++...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRK 321 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHH
Confidence 111 1223444444444444 3568999999996321 1122222221 122356666666554421
Q ss_pred -------cccCCceeecccCCHHHHHHHHHHhh
Q 037222 305 -------SMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 305 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
.......+.++..+.++...++....
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 11234577889999999988877543
No 147
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.71 E-value=0.00039 Score=77.17 Aligned_cols=170 Identities=20% Similarity=0.262 Sum_probs=95.9
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..+++|.+.+.- ...+.+.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc---
Confidence 4578999999988887641 134567899999999999999999976 2333 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEeccccccc----------c------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR-SLGEKRFVLLLDDLWERV----------D------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~----------~------~~~~~~~l~~-~ 286 (904)
++.. .. .... ......+.. ...+.+.+|+||+++... + ...+...+.+ .
T Consensus 252 -eL~~----k~-------~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 -ELIQ----KY-------LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -hhhh----hh-------cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1111 10 0111 122222222 224578899999986310 0 0111111110 1
Q ss_pred CCCCcEEEEEecchhhhcc-c----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 287 QNTTSKVVFATRFIDVCGS-M----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
...+.+||+||...+.... + .-...+++...+.++..++|..++.........++. .++..+.|+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~ 388 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDEL 388 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCC
Confidence 2345678888876544322 1 123578999999999999999877544322223333 445555554
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.00068 Score=76.03 Aligned_cols=153 Identities=11% Similarity=0.095 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
..-+.|+|+.|+|||+|++.+++... . ....+++++ ...+...+...+... . ...++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~-~--~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR-E--SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH-H--cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999872 1 123345653 345555555555321 1 12233333
Q ss_pred cCCcEEEEecccccccc----cccccCCCCCCCCCCcEEEEEecch---------hhhccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWERVD----LTKVGVPLPGPQNTTSKVVFATRFI---------DVCGSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~~~----~~~~~~~l~~~~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 325 (904)
+ +.-++++||+..... .+.+...+......|..||+||... .+...+.....+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 345888999864321 1222222110011345788888542 1122333456889999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
+.+++.......+ +++..-|++.+.|.
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 9988754332222 34455566665543
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=1.6e-05 Score=79.55 Aligned_cols=205 Identities=12% Similarity=0.059 Sum_probs=106.9
Q ss_pred cCCCcccEEEeecCCCccc--ccCccccccccCcEeecccCcc----cccchhhhcCCCCcEeecccccccc--ccchhh
Q 037222 561 QFMPSLKVLKISNCGNFTF--QLPLGMSKLGSLELFDISRTEI----QELPEELKLLVNLKCLNLRWTSKLI--RIPRQL 632 (904)
Q Consensus 561 ~~l~~Lr~L~l~~~~~i~~--~lp~~i~~L~~L~~L~l~~~~i----~~Lp~~~~~L~~L~~L~l~~~~~l~--~lp~~~ 632 (904)
+.+..++.|||.+| .|.+ ++-.-+.+|++|++|+++.|++ ..+| ..+.+|++|-|.++ .+. ... ..
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT-~L~w~~~~-s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT-GLSWTQST-SS 141 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC-CCChhhhh-hh
Confidence 45667777777777 6551 1222234677777777777744 3344 24567777777766 221 111 22
Q ss_pred hcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEeccc
Q 037222 633 ISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLA 712 (904)
Q Consensus 633 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 712 (904)
+..++.+++|+++.|+...+... ....+.. -+.+++|....+..............++++.++-+..|
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~D----------d~c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLD----------DNCIEDW--STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred hhcchhhhhhhhccchhhhhccc----------ccccccc--chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 55677778888877754432211 1111110 01233333333333333333333344567777777766
Q ss_pred CCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc-------ccccCC
Q 037222 713 GDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT-------FLVFAP 785 (904)
Q Consensus 713 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-------~l~~l~ 785 (904)
+..+.. .+.....++.+.-|++..+..-. |.. .-....|++|..|.+..++.++.+. .++.++
T Consensus 210 PlK~~s-~ek~se~~p~~~~LnL~~~~ids-----was----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 210 PLKTES-SEKGSEPFPSLSCLNLGANNIDS-----WAS----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cccchh-hcccCCCCCcchhhhhccccccc-----HHH----HHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 432211 11334455666666666543211 211 0112468888888888887655442 156788
Q ss_pred CccEEeEe
Q 037222 786 NLKSLELL 793 (904)
Q Consensus 786 ~L~~L~L~ 793 (904)
+++.|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 88888643
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.66 E-value=0.00047 Score=76.00 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=96.4
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 4678999988888876631 135678899999999999999999876 2232 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEeccccccc------------c----cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR-SLGEKRFVLLLDDLWERV------------D----LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 286 (904)
..+... .++ .. ......+.. .....+.+|++|+++... . +..+...+.+ .
T Consensus 213 s~l~~k---~~g--------e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 SEFVQK---YLG--------EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHHHHH---hcc--------hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111111 011 11 122222222 234678999999986310 0 1112222210 1
Q ss_pred CCCCcEEEEEecchhhhcc--c---cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCGS--M---EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+..||+||...+.... . .-...+++...+.++...+|............-++ .++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 2345678888876544221 1 12356888989999988888877654332222333 35566666653
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.66 E-value=0.0017 Score=64.92 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=70.0
Q ss_pred ccccchHHHHHHHHHHH----hcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCL----VEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..++|.|.+++.|++-. ......-+.+||..|+|||++++++.+.+ .... .--|.|.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y-~~~G----LRlIev~k~------------ 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY-ADQG----LRLIEVSKE------------ 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH-hhcC----ceEEEECHH------------
Confidence 57899999988887643 33456678889999999999999999987 2211 112222221
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccc---cccccccccCCCCC---CCCCCcEEEEEecchhhh
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLW---ERVDLTKVGVPLPG---PQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~~~~~l~~---~~~~gs~IivTtR~~~v~ 303 (904)
.-.+...+.+.++. +..||+|.+||+. .+.....++..+.+ .......|..||...+..
T Consensus 90 ---------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 ---------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 11223333333331 4579999999995 23345555555532 112334445565555553
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0013 Score=70.64 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hh-ccccCCceeecccCCHHHHHHHHHHhhCcccc
Q 037222 260 EKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VC-GSMEADRKFLVACLSEKDAWELFREKVGEETL 335 (904)
Q Consensus 260 ~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 335 (904)
+++-++|+|+++.. .....+...+. .-..++.+|+||.+.+ +. ...+....+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC--
Confidence 44555678999753 33444444443 3334677777777653 33 223446789999999999999887754211
Q ss_pred CCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 336 QSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 336 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567789999999866544
No 153
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00033 Score=73.14 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=104.7
Q ss_pred cccccchHHHHHHHHHHHhcCC---ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVEES---VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
.+.|.+|+.++..+..++-+.. .+.|-|+|..|.|||.+.+++.+.. . . ..+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n--~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N--L---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C--C---cceeeehHHhccHHHHHHHHHH
Confidence 4678899999999999887643 3456899999999999999999886 2 2 3589999999999999999999
Q ss_pred HhCCC-CCCCCCCC-HHHH---HHHHHH--HH--cCCcEEEEecccccccccccc--------cCCCCCCCCCCcEEEEE
Q 037222 234 KIGLS-DDSWKNKS-FEEK---AVDILR--SL--GEKRFVLLLDDLWERVDLTKV--------GVPLPGPQNTTSKVVFA 296 (904)
Q Consensus 234 ~l~~~-~~~~~~~~-~~~~---~~~l~~--~l--~~~r~LlVlDdv~~~~~~~~~--------~~~l~~~~~~gs~IivT 296 (904)
+.+.. .++..... .+.. ...+.+ .. +++.++||||+++.-.+.+.+ -..++ ...-+|++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~----~~~i~iil 154 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN----EPTIVIIL 154 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC----CCceEEEE
Confidence 98632 22111111 1222 222222 11 145899999999765443322 11121 12333444
Q ss_pred ecc--hhh-hccccCC--ceeecccCCHHHHHHHHHHhh
Q 037222 297 TRF--IDV-CGSMEAD--RKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 297 tR~--~~v-~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
+-. +.. ...+++. .++.....+.+|...++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 432 222 1223433 356778899999988886643
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.66 E-value=0.0003 Score=79.93 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
..-+.|+|..|+|||+|++.+++.. .....--.++|++ ..++..++...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVT------SEKFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 3568999999999999999999987 2111122355664 334445555554311 11 2233344
Q ss_pred cCCcEEEEeccccccc----ccccccCCCCCCCCCCcEEEEEecchh---------hhccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWERV----DLTKVGVPLPGPQNTTSKVVFATRFID---------VCGSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 325 (904)
+ +.-+|||||+.... ..+.+...+......|..||+|+.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 34489999996421 112222211101123445888776431 123334456899999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
+.+.+.......+ +++...|++.++|..-.+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 9998854321222 456778888888876543
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0014 Score=75.58 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=107.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|-+..+..+..++..+.. +.+.++|+.|+||||+|+.+++... -...... ..+....+- +.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchHH----HHHHcCCC
Confidence 4689999999999999987654 4578999999999999999988761 1111100 000000000 11111000
Q ss_pred CC---CCCCCCCCHHHHHHHHHH-----HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecc-hhhhc-
Q 037222 237 LS---DDSWKNKSFEEKAVDILR-----SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRF-IDVCG- 304 (904)
Q Consensus 237 ~~---~~~~~~~~~~~~~~~l~~-----~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~~v~~- 304 (904)
.. -+.......++.. .+.+ -..+++-++|+|+++.- ..+..+...+. .....+.+|++|.. ..+..
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHH
Confidence 00 0000011122221 1211 12356668999999753 34555655554 33445666655543 33322
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
.......+++.+++.++....+.+.+....... -.+.+..|++.++|.+-.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 223356789999999999888888764332111 245667899999998754433
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.0015 Score=70.90 Aligned_cols=262 Identities=16% Similarity=0.136 Sum_probs=140.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC--EEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD--CVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (904)
....+.|||..|.|||.|++++.+.. ..... .++++ +.+....+++..+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 47889999999999999999999987 23333 34444 244555555554432 1233445
Q ss_pred HHHcCCcEEEEeccccccc---cc-ccccCCCCCCCCCCcEEEEEecch---------hhhccccCCceeecccCCHHHH
Q 037222 256 RSLGEKRFVLLLDDLWERV---DL-TKVGVPLPGPQNTTSKVVFATRFI---------DVCGSMEADRKFLVACLSEKDA 322 (904)
Q Consensus 256 ~~l~~~r~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 322 (904)
+.. .-=++++||++--. .| +.+...|......|-.||+|++.. .+.+.+....++++.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 34488899997421 12 222222211122344899999653 2234445567899999999999
Q ss_pred HHHHHHhhCccccCCCccHH-HHHHHHHHHhCCchhHHHHHHHH-HhcC--CCHHHHHHHHHHHhhchhccCCchhhhHh
Q 037222 323 WELFREKVGEETLQSHHDIV-ELAQIVAKECGGLPLALITIGRA-MACK--RTAEEWIHAVEVLRRSAFEFAGLGKEVYP 398 (904)
Q Consensus 323 ~~Lf~~~~~~~~~~~~~~~~-~~~~~i~~~c~GlPLai~~~~~~-l~~~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~ 398 (904)
...+.+++.......+++.. -++..+-+-..-+.=|+..+..+ +..+ -+...-..++..+...... -. .++|..
T Consensus 250 ~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-it-ie~I~~ 327 (408)
T COG0593 250 LAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-IT-IEDIQK 327 (408)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc-CC-HHHHHH
Confidence 99999987654433333321 22222222222223333222221 1111 1333334444333322211 11 112222
Q ss_pred hHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHHHHHHhcccccccCCeeeh
Q 037222 399 LLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVGTLIHACLLEGIEDDRVKM 478 (904)
Q Consensus 399 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~m 478 (904)
+..- |.+++. +++. |=-+......++++|-...++|.++||.+.+..=. +-
T Consensus 328 ~Va~-~y~v~~---------------------~dl~------s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg-rd 378 (408)
T COG0593 328 IVAE-YYNVKV---------------------SDLL------SKSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG-RD 378 (408)
T ss_pred HHHH-HhCCCH---------------------HHhh------ccccccccchHHHHHHHHHHHHccCcHHHHHHHhC-CC
Confidence 2211 222222 1111 00011233456788888889999999999874333 78
Q ss_pred hhHHHHHHHHHHhh
Q 037222 479 HDVVRDMALWIACE 492 (904)
Q Consensus 479 Hdlv~d~a~~i~~~ 492 (904)
|.-|-.-++.|...
T Consensus 379 HtTV~~a~~kI~~~ 392 (408)
T COG0593 379 HTTVLHAVRKIEQL 392 (408)
T ss_pred ccHHHHHHHHHHHH
Confidence 88887777777755
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0054 Score=65.58 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=110.3
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccC-------------CCCCCEEEEEEecCCCC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES-------------PTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~~f~~~~wv~vs~~~~ 223 (904)
..++|.+..++.+...+..+.. +...++|+.|+||+++|..++....-. ..|.| ..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 3579999999999999988764 789999999999999999887775211 11222 23442210000
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEE
Q 037222 224 LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFA 296 (904)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivT 296 (904)
-..+-..-++..+........-..++ ++.+.+.+ .+++-++|+|+++.. .....+...+. .-. .+.+|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp-~~~fILi 159 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPG-NGTLILI 159 (314)
T ss_pred ccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCC-CCeEEEE
Confidence 00000111111111000001111222 23444444 355678999999754 33444444443 222 3345555
Q ss_pred ec-chhhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 297 TR-FIDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 297 tR-~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
|. ...+.. .......+++.+++.++..+.+.+...... .......++..++|.|..+...
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 44 444432 234567899999999999999988643211 1111357899999999766543
No 158
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00096 Score=77.67 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=106.2
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..+..+.+++..+.. +.+.++|+.|+||||+|+.+++... -....+. ..++.-....+|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 4689999999999999887665 4568999999999999999988761 1111000 00000011111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE-Eecchhhhcc
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF-ATRFIDVCGS 305 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv-TtR~~~v~~~ 305 (904)
... +.......++ ++.+.+.+ .+++-++|+|+++.- .....+...+. .....+.+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHH
Confidence 000 0000111111 12222222 244558899999753 23444444443 2233555555 4444444322
Q ss_pred -ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch-hHHHHHHHH
Q 037222 306 -MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP-LALITIGRA 365 (904)
Q Consensus 306 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~ 365 (904)
......+++.+++.++....+...+....... -.+....|++.++|.. .|+..+-.+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33456889999999998888877664332111 1345678899998865 455544333
No 159
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0036 Score=62.35 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV-SKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (904)
++-+++.|+|.-|+|||++++.+.... . =+.++-|.+ .+......+...|+..+............++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 466799999999999999999665554 1 111222333 3445778888888888876321111112333344444
Q ss_pred HHH-cCCc-EEEEecccccc--cccccccCCC--CCCCCCCcEEEEEecc--------hhhhccccCCc-eeecccCCHH
Q 037222 256 RSL-GEKR-FVLLLDDLWER--VDLTKVGVPL--PGPQNTTSKVVFATRF--------IDVCGSMEADR-KFLVACLSEK 320 (904)
Q Consensus 256 ~~l-~~~r-~LlVlDdv~~~--~~~~~~~~~l--~~~~~~gs~IivTtR~--------~~v~~~~~~~~-~~~l~~L~~~ 320 (904)
... +++| ..+++||.... ...+.++... ..+...--+|+..-.. ......-.... .|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 5677 89999999753 2232222111 1011111223332221 11111111112 3899999999
Q ss_pred HHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHH
Q 037222 321 DAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGR 364 (904)
Q Consensus 321 e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 364 (904)
+...++.....+.....+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999888875443122212245567899999999999987763
No 160
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.56 E-value=0.00079 Score=68.40 Aligned_cols=181 Identities=15% Similarity=0.205 Sum_probs=111.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEE-EEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVI-WVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..+.-+.+.+.....++...+|++|.|||+-|..++... --..-|.+++ -.++|......-+-.
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~------- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVRE------- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhh-------
Confidence 4679999999999999988778999999999999999999988876 2234454432 233333221110000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH--cCCc-EEEEecccccc--cccccccCCCCCCCCCCcEEE-EEecchhhhcc-ccCC
Q 037222 237 LSDDSWKNKSFEEKAVDILRSL--GEKR-FVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVV-FATRFIDVCGS-MEAD 309 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l--~~~r-~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii-vTtR~~~v~~~-~~~~ 309 (904)
...+.+.+........ .-++ -++|||+++.. ..|..++..+. .....++.| ||+--..+..- ....
T Consensus 108 ------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 108 ------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhH
Confidence 0111111111110000 0123 47889999864 56888877766 444555655 44443333221 2234
Q ss_pred ceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 310 RKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 310 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
..|..++|.+++...-++..+..+....+ .+..+.|++.++|--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 67899999999999999888865543333 345678999998854
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.001 Score=75.89 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
...+.|+|..|+|||.|++.+++.. .....--.++|++ ..++..++...+... . ...+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yit------aeef~~el~~al~~~-------~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVS------SEEFTNEFINSIRDG-------K----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEee------HHHHHHHHHHHHHhc-------c----HHHHHHHh
Confidence 3458999999999999999999986 2111112456663 445555555544211 1 12233333
Q ss_pred cCCcEEEEecccccc---cccc-cccCCCCCCCCCCcEEEEEecch---------hhhccccCCceeecccCCHHHHHHH
Q 037222 259 GEKRFVLLLDDLWER---VDLT-KVGVPLPGPQNTTSKVVFATRFI---------DVCGSMEADRKFLVACLSEKDAWEL 325 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~---~~~~-~~~~~l~~~~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 325 (904)
++ .=+|||||+... ..|. .+...+......|..|||||+.. .+...+.....++|++.+.+.-..+
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 347889999643 1222 22222210112355688888852 2233344567899999999999999
Q ss_pred HHHhhCccccCCCccHHHHHHHHHHHhCCchh
Q 037222 326 FREKVGEETLQSHHDIVELAQIVAKECGGLPL 357 (904)
Q Consensus 326 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 357 (904)
+.+++.......+ +++..-|++.+.+..-
T Consensus 455 L~kka~~r~l~l~---~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 455 LRKKAVQEQLNAP---PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhccCCHH
Confidence 9998865432222 4566667777665543
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=1.3e-05 Score=70.89 Aligned_cols=93 Identities=14% Similarity=0.255 Sum_probs=79.2
Q ss_pred CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCC
Q 037222 535 VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNL 614 (904)
Q Consensus 535 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L 614 (904)
......|...+++ ++.+.++|+.+-..++.+..|+++++ .|. .+|..+..++.|+.|+++.|++...|.-+..|.+|
T Consensus 49 l~~~~el~~i~ls-~N~fk~fp~kft~kf~t~t~lNl~~n-eis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLS-DNGFKKFPKKFTIKFPTATTLNLANN-EIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecc-cchhhhCCHHHhhccchhhhhhcchh-hhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhH
Confidence 3666778888888 67788899887778888999999999 898 89999999999999999999999999988889999
Q ss_pred cEeeccccccccccchh
Q 037222 615 KCLNLRWTSKLIRIPRQ 631 (904)
Q Consensus 615 ~~L~l~~~~~l~~lp~~ 631 (904)
-.|+..++ ....+|..
T Consensus 126 ~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 126 DMLDSPEN-ARAEIDVD 141 (177)
T ss_pred HHhcCCCC-ccccCcHH
Confidence 99998887 56777765
No 163
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0026 Score=73.70 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=104.7
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.+++|.+..+..+.+++..+. .+.+.++|+.|+||||+|+.+.... .-....+ ..+++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 468999999999999998764 4556789999999999999998775 1111000 001111111122211110
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE-Eecchhhhcc
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF-ATRFIDVCGS 305 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv-TtR~~~v~~~ 305 (904)
... +.......++ ++.+.+.. .+++-++|+|+++.- ..+..+...+. .......+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHH
Confidence 000 0000111111 11222221 345668899999743 34555544443 2233445554 4444443322
Q ss_pred -ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 306 -MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 306 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
......+.+.+++.++....+...+.......+ .+....|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 234567899999999999888887643321111 3556788888988775443
No 164
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=5.1e-05 Score=89.15 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=89.1
Q ss_pred cceeEEEeecccccc---cc-CCCCCCCceEEEeecCccccc-ccchhhcCCCcccEEEeecCCCcccccCccccccccC
Q 037222 517 ENVTRLSLMQNQIKI---LS-EVPTCPDLLTLFLDFNEELEM-IADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSL 591 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~---l~-~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L 591 (904)
.++++|++.+...-. .. -...+|.|++|.+.+ ..+.. --...+.++++|+.||+|++ +++ .+ ..|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~-nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NIS-NL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-Ccc-Cc-HHHhccccH
Confidence 378888887753321 11 126789999999984 33311 11233678999999999999 998 77 789999999
Q ss_pred cEeecccCcccccc--hhhhcCCCCcEeecccccccccc--chhh---hcCCCCCceeeecccCC
Q 037222 592 ELFDISRTEIQELP--EELKLLVNLKCLNLRWTSKLIRI--PRQL---ISNSSGLRVLRMFATGY 649 (904)
Q Consensus 592 ~~L~l~~~~i~~Lp--~~~~~L~~L~~L~l~~~~~l~~l--p~~~---i~~L~~L~~L~l~~~~~ 649 (904)
+.|.+++-.++.-+ ..+.+|++|++||++........ .... -..|++||.|+.+++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999887666433 36789999999999987443221 1110 12477888888776544
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00045 Score=82.09 Aligned_cols=155 Identities=19% Similarity=0.301 Sum_probs=92.3
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCC---CCEEEEEEecCCCCHHHHHHHHHHHh
Q 037222 159 TVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTN---FDCVIWVVVSKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~~l 235 (904)
.++||+.++.++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. ++..+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 479999999999999887544556789999999999999999875111111 24445521 12111 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc----------cccccccCCCCCCCCCCcEEEEEecchhhhc
Q 037222 236 GLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER----------VDLTKVGVPLPGPQNTTSKVVFATRFIDVCG 304 (904)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~----------~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~ 304 (904)
+.. ...+.+.....+...+ +.++.+|++|+++.- .+...+..++. ....-+||.+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHH
Confidence 100 1123344444444444 346789999999742 11222222322 123355666665444311
Q ss_pred -------cccCCceeecccCCHHHHHHHHHHhh
Q 037222 305 -------SMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 305 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
.......+.++..+.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11233578999999999999988764
No 166
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00024 Score=76.79 Aligned_cols=82 Identities=18% Similarity=0.345 Sum_probs=57.0
Q ss_pred cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeec
Q 037222 517 ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDI 596 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l 596 (904)
...++|+++.+.+..+|.+ -++|++|.+++|+.+..+|..+ .++|++|++++|..+. .+|.+ |+.|++
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPES------VRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccccc------cceEEe
Confidence 3567888888877777633 2369999998778887777643 2578999999886777 77764 555556
Q ss_pred ccC---cccccchhhhc
Q 037222 597 SRT---EIQELPEELKL 610 (904)
Q Consensus 597 ~~~---~i~~Lp~~~~~ 610 (904)
+++ .+..||.++..
T Consensus 120 ~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 120 KGSATDSIKNVPNGLTS 136 (426)
T ss_pred CCCCCcccccCcchHhh
Confidence 554 35667765543
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.48 E-value=0.001 Score=81.51 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=90.8
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 159 TVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.++||+.++.+++..|......-+.++|.+|+|||++|+.++... ..... .+..+|.. ++..+. .
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i-~~~~~p~~l~~~~~~~l-----~~~~l~----a- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI-VNGDVPESLKNKRLLAL-----DMGALI----A- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH-hccCCchhhcCCeEEEe-----eHHHHh----h-
Confidence 479999999999999987666667789999999999999998876 21111 12333321 111111 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc---------ccccccCCCCCCCCCCcEEEEEecchhhh
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV---------DLTKVGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
+.. ...+.+.....+...+. +++.+|++|+++.-. +...+..+.. ....-++|.+|..++.-
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 000 11233444444444442 468999999997421 1112222222 12234566555555431
Q ss_pred c-------cccCCceeecccCCHHHHHHHHHHhh
Q 037222 304 G-------SMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 304 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
. .......+.+...+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11233568899999999999887664
No 168
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=0.0013 Score=72.78 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 037222 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW 242 (904)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (904)
|..-..++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++..-+.....
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~----------------- 77 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDR----------------- 77 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcch-----------------
Confidence 34445555555544433 99999999999999997777665 122 5555432211100
Q ss_pred CCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhc------cccCCceeeccc
Q 037222 243 KNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCG------SMEADRKFLVAC 316 (904)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~------~~~~~~~~~l~~ 316 (904)
....+....+...-..++.+++||.|....+|+.....+. +.+.. +|++|+-+..... ..+....+++-|
T Consensus 78 --~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 78 --IELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred --hhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 0011111111121122778999999999999998877776 55555 8999888765522 123456889999
Q ss_pred CCHHHHHHHH
Q 037222 317 LSEKDAWELF 326 (904)
Q Consensus 317 L~~~e~~~Lf 326 (904)
||..|...+-
T Consensus 154 lSF~Efl~~~ 163 (398)
T COG1373 154 LSFREFLKLK 163 (398)
T ss_pred CCHHHHHhhc
Confidence 9999987654
No 169
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=3.5e-05 Score=77.15 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=107.6
Q ss_pred cccEEEeecCCCcccccC--cccc-ccccCcEeecccCcccc---cchhhhcCCCCcEeeccccccccccchhhhc----
Q 037222 565 SLKVLKISNCGNFTFQLP--LGMS-KLGSLELFDISRTEIQE---LPEELKLLVNLKCLNLRWTSKLIRIPRQLIS---- 634 (904)
Q Consensus 565 ~Lr~L~l~~~~~i~~~lp--~~i~-~L~~L~~L~l~~~~i~~---Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~---- 634 (904)
-+..|-+.++ .|. ..- ..++ ...+++.|||.+|.|.. +-.-+.+|+.|++|+++.| .+.. . |.
T Consensus 46 a~ellvln~~-~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s--~--I~~lp~ 118 (418)
T KOG2982|consen 46 ALELLVLNGS-IID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS--D--IKSLPL 118 (418)
T ss_pred chhhheecCC-CCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC--c--cccCcc
Confidence 4446666676 554 211 1222 56789999999997764 4445678999999999977 3321 1 33
Q ss_pred CCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCC
Q 037222 635 NSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGD 714 (904)
Q Consensus 635 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 714 (904)
.+.+|+.|-+.++..... ..-..+..++.++.|.++.| +++.+.+.....
T Consensus 119 p~~nl~~lVLNgT~L~w~--------------~~~s~l~~lP~vtelHmS~N----------------~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWT--------------QSTSSLDDLPKVTELHMSDN----------------SLRQLNLDDNCI 168 (418)
T ss_pred cccceEEEEEcCCCCChh--------------hhhhhhhcchhhhhhhhccc----------------hhhhhccccccc
Confidence 345888888887655311 11222445555555555433 233333332211
Q ss_pred CcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc---ccccCCCccEEe
Q 037222 715 TKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT---FLVFAPNLKSLE 791 (904)
Q Consensus 715 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~---~l~~l~~L~~L~ 791 (904)
... .+.++.|...+|.... |... .....-||++..+.+..|+. ++.. ....+|.+-.|.
T Consensus 169 e~~---------s~~v~tlh~~~c~~~~-----w~~~---~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 169 EDW---------STEVLTLHQLPCLEQL-----WLNK---NKLSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred ccc---------chhhhhhhcCCcHHHH-----HHHH---HhHHhhcccchheeeecCcc-cchhhcccCCCCCcchhhh
Confidence 110 0233333333332211 1100 00013567777777777752 2221 244556666666
Q ss_pred EecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccccc
Q 037222 792 LLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIY 838 (904)
Q Consensus 792 L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 838 (904)
|+. +++.+.-. ...+..||+|..|.+++.|-+..+.
T Consensus 231 L~~-~~idswas----------vD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 231 LGA-NNIDSWAS----------VDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcc-cccccHHH----------HHHHcCCchhheeeccCCccccccc
Confidence 654 23333311 1246677888888877777555443
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.42 E-value=0.00082 Score=81.93 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=89.7
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEE-EEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVI-WVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~-wv~vs~~~~~~~~~~~i~ 232 (904)
..++||+.++.++++.|......-+.++|.+|+||||+|+.+.... ..... .+..+ ++.++ .+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i-~~~~vp~~l~~~~~~~l~l~------~l~a--- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI-INGEVPEGLKGRRVLALDMG------ALVA--- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh-hcCCCchhhCCCEEEEEehh------hhhh---
Confidence 3589999999999999987666677799999999999999999886 21111 12222 22222 1110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEeccccccc---------ccccccCCCCCCCCCCcEEEEEecchh
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSL--GEKRFVLLLDDLWERV---------DLTKVGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
+.. .....+.....+...+ .+++.+|++|+++.-. +-..+..+.. ....-++|.||...+
T Consensus 248 ---g~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e 318 (857)
T PRK10865 248 ---GAK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDE 318 (857)
T ss_pred ---ccc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHH
Confidence 000 1123334444444333 2568999999997431 1222322322 123456666666554
Q ss_pred hhc-------cccCCceeecccCCHHHHHHHHHHhh
Q 037222 302 VCG-------SMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 302 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
... .......+.+..-+.++...++....
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 311 11123356666668899998886654
No 171
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.42 E-value=0.012 Score=63.67 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHH-HHHHHhcccCCCCCCEEEEEEecCC---CCHHHHHHHHHHHhCCC
Q 037222 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCVIWVVVSKD---LRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~~ 238 (904)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++..+. + .++.|.+.+- .+-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988899999999999999999 7766654 1 2677766443 23455666666666421
Q ss_pred -----------------------CCCCCCCCHHHHHHHH-------HH-------------------HHc---CCcEEEE
Q 037222 239 -----------------------DDSWKNKSFEEKAVDI-------LR-------------------SLG---EKRFVLL 266 (904)
Q Consensus 239 -----------------------~~~~~~~~~~~~~~~l-------~~-------------------~l~---~~r~LlV 266 (904)
..++....+.++...+ +. +|+ .++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1122222233322221 11 010 1266899
Q ss_pred ecccccc-----------cccccccCCCCCCCCCCcEEEEEecchhhhcc----c--cCCceeecccCCHHHHHHHHHHh
Q 037222 267 LDDLWER-----------VDLTKVGVPLPGPQNTTSKVVFATRFIDVCGS----M--EADRKFLVACLSEKDAWELFREK 329 (904)
Q Consensus 267 lDdv~~~-----------~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~----~--~~~~~~~l~~L~~~e~~~Lf~~~ 329 (904)
+|+.-.. .+|... + ...+-.+||+.|-+...... + ...+.+.|...+.+.|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998542 234432 2 23456789999987655432 2 23467899999999999999998
Q ss_pred hCccccC------------CC-----ccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHH
Q 037222 330 VGEETLQ------------SH-----HDIVELAQIVAKECGGLPLALITIGRAMACKRTAE 373 (904)
Q Consensus 330 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 373 (904)
....... .. .....-....++..||=-.-+..+++.++...++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 8543100 00 12333446778889999999999988888765543
No 172
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=4.5e-05 Score=88.43 Aligned_cols=88 Identities=25% Similarity=0.242 Sum_probs=56.0
Q ss_pred hcCCCcccEEEeecCCCcccc--cCccccccccCcEeecccC--ccccc----chhhhcCCCCcEeeccccccccccchh
Q 037222 560 FQFMPSLKVLKISNCGNFTFQ--LPLGMSKLGSLELFDISRT--EIQEL----PEELKLLVNLKCLNLRWTSKLIRIPRQ 631 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~~~i~~~--lp~~i~~L~~L~~L~l~~~--~i~~L----p~~~~~L~~L~~L~l~~~~~l~~lp~~ 631 (904)
...+++|+.|.+.++..+. . +-.....+++|+.|+++++ .+... +.....+.+|+.|++++|..++..--.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKIT-DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCC-hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 4457888888888886665 3 3344567888888888873 22211 223445678888888888545544332
Q ss_pred hhc-CCCCCceeeecccC
Q 037222 632 LIS-NSSGLRVLRMFATG 648 (904)
Q Consensus 632 ~i~-~L~~L~~L~l~~~~ 648 (904)
.+. .+++|++|.+..|.
T Consensus 263 ~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCS 280 (482)
T ss_pred HHHhhCCCcceEccCCCC
Confidence 233 37788888866564
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.40 E-value=0.0063 Score=73.94 Aligned_cols=46 Identities=30% Similarity=0.352 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..+++|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887642 134579999999999999999999987
No 174
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=4.3e-06 Score=92.99 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=99.9
Q ss_pred cccceeEEEeeccccccccC-CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcE
Q 037222 515 ESENVTRLSLMQNQIKILSE-VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLEL 593 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~ 593 (904)
.|.++...++++|.+..+.. +.-++.|+.|+++ .|.+.++. ++..+++|+.|||++| .+. .+|.---.=.+|+.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLs-hNk~~~v~--~Lr~l~~LkhLDlsyN-~L~-~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLS-HNKFTKVD--NLRRLPKLKHLDLSYN-CLR-HVPQLSMVGCKLQL 236 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccc-hhhhhhhH--HHHhcccccccccccc-hhc-cccccchhhhhhee
Confidence 46788888888888765543 3557889999999 56676665 4889999999999999 888 77743222234999
Q ss_pred eecccCcccccchhhhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCCc
Q 037222 594 FDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 594 L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 650 (904)
|++++|.++.| .++.+|.+|+.||+++| .+..... ..++.|..|+.|++.||.+-
T Consensus 237 L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999888 58999999999999988 4443221 22788899999999999765
No 175
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.38 E-value=0.0012 Score=74.52 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=89.8
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCC---CCCEEEEEEecCC
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT---NFDCVIWVVVSKD 221 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~ 221 (904)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. .... ......|+.++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 4567899999998887641 134568899999999999999999986 2110 1223445544331
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc---------cc-----cccccCC
Q 037222 222 LRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER---------VD-----LTKVGVP 282 (904)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~---------~~-----~~~~~~~ 282 (904)
+++. .. .. ..+.....+.+.. .+++.+|+||+++.. .+ ...+...
T Consensus 261 ----eLl~----ky-------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 261 ----ELLN----KY-------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ----hhcc----cc-------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 1111 00 00 1112222222222 357899999999742 01 1122222
Q ss_pred CCCC-CCCCcEEEEEecchhhhc-cc----cCCceeecccCCHHHHHHHHHHhhCc
Q 037222 283 LPGP-QNTTSKVVFATRFIDVCG-SM----EADRKFLVACLSEKDAWELFREKVGE 332 (904)
Q Consensus 283 l~~~-~~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 332 (904)
+.+. ...+..||.||...+... .+ .-...++++..+.++..++|.++...
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 3211 123445666665544322 11 12346899999999999999988743
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.35 E-value=0.0018 Score=74.64 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=92.6
Q ss_pred ccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.++... ... ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH----H
Confidence 467888877766655443 1 123458899999999999999999876 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc------------ccc----cccCCCCC-CCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV------------DLT----KVGVPLPG-PQN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------------~~~----~~~~~l~~-~~~ 288 (904)
++.. .. .......+...+.......+.+|++||++.-. .+. .+...+.+ ...
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 11 01112222223333334567899999996420 011 11111110 122
Q ss_pred CCcEEEEEecchhhhc-cc----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 289 TTSKVVFATRFIDVCG-SM----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 289 ~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
.+..||.||....... .+ .-...+++...+.++-.++|...+........ .....+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCC
Confidence 3455666676543211 11 12357888988999989999887754321111 1234778888774
No 177
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00026 Score=73.95 Aligned_cols=102 Identities=25% Similarity=0.262 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG 259 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (904)
..+.++|..|+|||.||..+++.. .. ....++|++ ..+++..|....... ...+.. .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~--~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IE--KGVPVIFVN------FPQLLNRIKSTYKSS----GKEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEE------HHHHHHHHHHHHhcc----ccccHH----HHHHHhc
Confidence 458899999999999999999997 22 223456664 455666665554321 111222 2334444
Q ss_pred CCcEEEEeccccc--cccccc--ccCCCCCCCCCCcEEEEEecc
Q 037222 260 EKRFVLLLDDLWE--RVDLTK--VGVPLPGPQNTTSKVVFATRF 299 (904)
Q Consensus 260 ~~r~LlVlDdv~~--~~~~~~--~~~~l~~~~~~gs~IivTtR~ 299 (904)
+-. ||||||+.. ..+|.. +...+...-..|..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999943 334432 222221011245678999873
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00029 Score=67.03 Aligned_cols=98 Identities=24% Similarity=0.421 Sum_probs=48.6
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC--ccccccccCcEeecc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP--LGMSKLGSLELFDIS 597 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp--~~i~~L~~L~~L~l~ 597 (904)
..+++.+|++..+..++.++.|.+|.+. ++.+..+.+.+-.-+++|.+|.|.+| +|. .+- ..+..++.|++|.+-
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L~LtnN-si~-~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTLILTNN-SIQ-ELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhcccCCCccccceEEec-CCcceeeccchhhhccccceEEecCc-chh-hhhhcchhccCCccceeeec
Confidence 3445555555555555555666666665 45555555554444555666666655 444 221 123344555555555
Q ss_pred cCcccccch----hhhcCCCCcEeecc
Q 037222 598 RTEIQELPE----ELKLLVNLKCLNLR 620 (904)
Q Consensus 598 ~~~i~~Lp~----~~~~L~~L~~L~l~ 620 (904)
+|+++..+. -+.++++|++||+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 554444332 13344444444443
No 179
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=0.00014 Score=70.21 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEE
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIW 215 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 215 (904)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987222356777776
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0057 Score=66.23 Aligned_cols=146 Identities=7% Similarity=0.036 Sum_probs=86.1
Q ss_pred cccc-hHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC-------------------CCCCEEEEEE
Q 037222 159 TVVG-LQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TNFDCVIWVV 217 (904)
Q Consensus 159 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~ 217 (904)
.++| -+..++.+.+.+..+.. +...++|+.|+||||+|+.+.+...-.. .|.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4567 67777888888876654 5668999999999999999987752100 1222211111
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-----HcCCcEEEEecccccc--cccccccCCCCCCCCCC
Q 037222 218 VSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS-----LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTT 290 (904)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~g 290 (904)
-+. ....++.. .+.+. ..+.+=++|+|+++.. .....+...+. ....+
T Consensus 86 ~~~-----------------------~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~ 140 (329)
T PRK08058 86 DGQ-----------------------SIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGG 140 (329)
T ss_pred ccc-----------------------cCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCC
Confidence 011 11112221 12222 2345567899998653 23444444454 33456
Q ss_pred cEEEEEecch-hhhc-cccCCceeecccCCHHHHHHHHHHh
Q 037222 291 SKVVFATRFI-DVCG-SMEADRKFLVACLSEKDAWELFREK 329 (904)
Q Consensus 291 s~IivTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~ 329 (904)
+.+|++|.+. .+.. .......+++.+++.++....+.+.
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777777653 3322 2345678999999999998888653
No 181
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0043 Score=64.60 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=116.5
Q ss_pred cccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 159 TVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+=|-++++++|.+.+.- +..+-|.++|++|.|||-||++|++.- ...| +.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 456789999999888642 356778899999999999999999986 3333 433321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC-CcEEEEecccccc----------c------ccccccCCCCC-CC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE-KRFVLLLDDLWER----------V------DLTKVGVPLPG-PQ 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~----------~------~~~~~~~~l~~-~~ 287 (904)
++.+.- +| ....+++.+.+.-+. .+.+|.+|.++.. . ..-++...+.+ +.
T Consensus 220 ElVqKY---iG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ELVQKY---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHHH---hc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 222211 11 123455666665544 5889999998631 0 01122222221 33
Q ss_pred CCCcEEEEEecchhhhcc--cc---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch----hH
Q 037222 288 NTTSKVVFATRFIDVCGS--ME---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP----LA 358 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----La 358 (904)
....|||.+|...++..- +. -...+++..=+.+.-.+.|.-++.......+-+++ .+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 456799998887766322 11 23567777555555566777777665544445555 4556666653 45
Q ss_pred HHHHHHHHhcC--C---CHHHHHHHHHHH
Q 037222 359 LITIGRAMACK--R---TAEEWIHAVEVL 382 (904)
Q Consensus 359 i~~~~~~l~~~--~---~~~~w~~~~~~l 382 (904)
+.+=|++++-+ + +.+++..+.++.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 56666665432 2 456666655544
No 182
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.28 E-value=0.0014 Score=70.17 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE-EEEEEecCC-CCHHHHHHHHHHHhCCCCCCCC
Q 037222 167 LEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKD-LRLEKIQDDIGKKIGLSDDSWK 243 (904)
Q Consensus 167 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~ 243 (904)
..++++.+.. +.-..+.|+|.+|+|||||++.+++.. . ..+-+. .+|+.+.+. .++.++.+.+...+..... +
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~--d 195 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-A-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF--D 195 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-H-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC--C
Confidence 4457777764 344567999999999999999999876 2 234454 477777665 4688888888887764321 1
Q ss_pred CCCHH-----HHHHHHHHHH--cCCcEEEEecccc
Q 037222 244 NKSFE-----EKAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 244 ~~~~~-----~~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..... .....+.+++ +++..+||+|++.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11111 1122233333 6899999999984
No 183
>PRK07261 topology modulation protein; Provisional
Probab=97.24 E-value=0.00083 Score=65.21 Aligned_cols=66 Identities=20% Similarity=0.380 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE 260 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 260 (904)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998775111224455555211 1233455566666667766
Q ss_pred CcEEEEecccc
Q 037222 261 KRFVLLLDDLW 271 (904)
Q Consensus 261 ~r~LlVlDdv~ 271 (904)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 5777763
No 184
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.24 E-value=0.0044 Score=74.47 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=85.7
Q ss_pred cccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 230 (904)
+.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.++... ...|- -+..+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 34579999999999988863 245689999999999999999999876 23332 1233333333222111
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccc------cccccCCCCC--------------CCCCC
Q 037222 231 IGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVD------LTKVGVPLPG--------------PQNTT 290 (904)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~------~~~~~~~l~~--------------~~~~g 290 (904)
-.. +...........+... ....-+++||+++.... ...+...+.. ..-..
T Consensus 395 ~~~--------~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRT--------YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhc--------cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 000 0111112222223221 22334788999964211 1111111100 11133
Q ss_pred cEEEEEecchhhh-ccccCCceeecccCCHHHHHHHHHHhh
Q 037222 291 SKVVFATRFIDVC-GSMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 291 s~IivTtR~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
.-+|.|+....+. ...+....+.+.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4445555544331 122344678899999988888776665
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.011 Score=63.09 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccC----------------CCCCCEEEEEEecCCCCHHH
Q 037222 164 QSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLES----------------PTNFDCVIWVVVSKDLRLEK 226 (904)
Q Consensus 164 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------~~~f~~~~wv~vs~~~~~~~ 226 (904)
+...+.+...+..+.. ..+.++|+.|+||+|+|..++....-. ..|.| ..||......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~---- 84 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNR---- 84 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCc----
Confidence 3456677777766654 468899999999999999988765210 11111 1111100000
Q ss_pred HHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHHH-----cCCcEEEEeccccccc--ccccccCCCCCCCCCCcEEEEEec
Q 037222 227 IQDDIGKKIGLSDDSW-KNKSFEEKAVDILRSL-----GEKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVVFATR 298 (904)
Q Consensus 227 ~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IivTtR 298 (904)
..... .....+ .++.+.+.+ .+++-++|+|+++... .-..+...+. .-..++.+|++|.
T Consensus 85 -----------~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~ 151 (319)
T PRK08769 85 -----------TGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISA 151 (319)
T ss_pred -----------ccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEEC
Confidence 00000 001111 222333333 2456689999997532 2222322332 2234666776666
Q ss_pred c-hhhh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 299 F-IDVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 299 ~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
+ ..+. ...+....+.+.+++.+++...+.+. +.. ...+..++..++|.|+.+..+.
T Consensus 152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 4 3443 22345678899999999999888653 111 2236678999999998765543
No 186
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.012 Score=62.87 Aligned_cols=177 Identities=10% Similarity=0.049 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC-----CC
Q 037222 165 SQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG-----LS 238 (904)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-----~~ 238 (904)
.....+.+.+..+. .....+.|+.|+||+++|+.++....- ...... ..+..=...+.+...-. ..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGD-------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34566777776655 467779999999999999999877621 010000 00000000111110000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhh-ccccCC
Q 037222 239 DDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVC-GSMEAD 309 (904)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~-~~~~~~ 309 (904)
......-..++ ++.+.+.+ .+++=++|+|+++.. .....+...+. .-..++.+|++|.+. .+. ...+..
T Consensus 81 p~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 81 PIDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred cccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhc
Confidence 00000111222 22233332 355668889999754 33444444443 334466777776654 443 223456
Q ss_pred ceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 310 RKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 310 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
..+.+.+++.++..+.+.+..... ...+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 789999999999998887764221 112556788999999644
No 187
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0045 Score=68.58 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=60.5
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.++=|.+..+.++.+.+.. ...+-|.++|++|.|||.||+++++.. .+ . |+.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~v--P-----f~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GV--P-----FLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CC--c-----eEeecch----
Confidence 3456888888888887642 245678899999999999999999987 22 2 3333322
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWE 272 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 272 (904)
+|+... ...+++...+.+.+.-..-++++++|+++-
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 233444444444444566899999999964
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.0012 Score=76.45 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHHHhcC-----CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEE-----SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++++..++... ...++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999998752 34579999999999999999999875
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.23 E-value=0.00048 Score=69.69 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=41.4
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEE
Q 037222 159 TVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 216 (904)
.+.++......++.++.+. .++.+.|.+|+|||+||.++..+. -..+.|+.++.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~ 110 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVT 110 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEe
Confidence 4567888889999988763 599999999999999999988864 113445544433
No 190
>CHL00176 ftsH cell division protein; Validated
Probab=97.18 E-value=0.0061 Score=71.36 Aligned_cols=171 Identities=16% Similarity=0.214 Sum_probs=94.8
Q ss_pred ccccchHHHHHHHHHH---HhcC---------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRC---LVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.++.++++.+. +... ..+-|.++|++|+|||+||+.++... ... |+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 4578887766655544 3321 23468899999999999999999875 222 233221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc------------cc----cccccCCCCC-CCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER------------VD----LTKVGVPLPG-PQN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~----~~~~~~~l~~-~~~ 288 (904)
++.. .. ...........+.......+.+|++||++.- .. +..+...+.+ ...
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111 00 0011122222333444567899999999632 01 1222222210 123
Q ss_pred CCcEEEEEecchhhhc-cc-c---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 289 TTSKVVFATRFIDVCG-SM-E---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 289 ~gs~IivTtR~~~v~~-~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
.+..||.||...+... .+ . -...+.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 4556777776644322 11 1 23577888889999999998887543211 123346777887773
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0056 Score=66.62 Aligned_cols=145 Identities=19% Similarity=0.194 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
....+.+.|++|+|||+||..++.. ..|..+--++ +++ ....++......+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiS------pe~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIIS------PED---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeC------hHH---------------ccCccHHHHHHHHHHH
Confidence 4556789999999999999999876 4677554442 111 1223344444444443
Q ss_pred H----cCCcEEEEecccccccccccccCCCCC------------CCCCCcE--EEEEecchhhhccccC----Cceeecc
Q 037222 258 L----GEKRFVLLLDDLWERVDLTKVGVPLPG------------PQNTTSK--VVFATRFIDVCGSMEA----DRKFLVA 315 (904)
Q Consensus 258 l----~~~r~LlVlDdv~~~~~~~~~~~~l~~------------~~~~gs~--IivTtR~~~v~~~~~~----~~~~~l~ 315 (904)
+ +..--.||+||++.-.+|..++..+.+ ....|-| |+-||....+...|+- ...|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3 556679999999877777665543321 1123333 5557777788777753 3578899
Q ss_pred cCCH-HHHHHHHHHhhCccccCCCccHHHHHHHHHHHh
Q 037222 316 CLSE-KDAWELFREKVGEETLQSHHDIVELAQIVAKEC 352 (904)
Q Consensus 316 ~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 352 (904)
.++. ++..+.++..-- -.+.+.+.++.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 9887 777777766531 12344555666666666
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.0015 Score=61.04 Aligned_cols=88 Identities=23% Similarity=0.086 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG 259 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (904)
..+.|+|++|+||||+|+.++... . ......+++..+........... ........ ...........+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL-G--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc-C--CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987 2 22234566655443322221111 00111110 22233334445555554
Q ss_pred CC-cEEEEeccccccc
Q 037222 260 EK-RFVLLLDDLWERV 274 (904)
Q Consensus 260 ~~-r~LlVlDdv~~~~ 274 (904)
.. ..++++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 44 4999999997643
No 193
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0072 Score=68.71 Aligned_cols=158 Identities=21% Similarity=0.208 Sum_probs=90.1
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI 231 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 231 (904)
.+-+|.++.+++|+++|.- -+-+++.++|++|+|||+|++.++... .+.|-. +++..-.|..+|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHh----
Confidence 3458999999999999852 245799999999999999999999987 444421 233333333322
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc---------ccccccCCCCC---------CCCCCcEE
Q 037222 232 GKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV---------DLTKVGVPLPG---------PQNTTSKV 293 (904)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---------~~~~~~~~l~~---------~~~~gs~I 293 (904)
..+....-..-+...++.+.+ .+.+.-+++||.++... .+-++..|-.+ -.-.=|+|
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111111122222233333322 24466788899986421 11111111100 01112344
Q ss_pred E-EEec-chh-h-hccccCCceeecccCCHHHHHHHHHHhh
Q 037222 294 V-FATR-FID-V-CGSMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 294 i-vTtR-~~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
+ |||- +-+ + +..+....++++.+.+++|=.+.-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 3333 323 2 3345567899999999999888877765
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.09 E-value=0.0043 Score=59.54 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCC------------------CCCCEEEEEEecCC-
Q 037222 162 GLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVVSKD- 221 (904)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~vs~~- 221 (904)
|-+...+.+.+.+..+.. ..+.++|+.|+||+|+|..++....-.. .+.| ..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 556677778888877654 4679999999999999999888762111 1222 233322221
Q ss_pred --CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe
Q 037222 222 --LRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT 297 (904)
Q Consensus 222 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt 297 (904)
..++++. ++.+.+.... ..+++=++|+||++.. .....+...+. ....++.+|++|
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t 139 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILIT 139 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEE
Confidence 2222222 3333332211 1245668999999863 34555544444 445678888888
Q ss_pred cchhh--hccccCCceeecccCC
Q 037222 298 RFIDV--CGSMEADRKFLVACLS 318 (904)
Q Consensus 298 R~~~v--~~~~~~~~~~~l~~L~ 318 (904)
++.+- .........+.+.++|
T Consensus 140 ~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 140 NNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-GGGS-HHHHTTSEEEEE----
T ss_pred CChHHChHHHHhhceEEecCCCC
Confidence 87543 2223345566776654
No 195
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.08 E-value=0.0013 Score=66.27 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 218 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 218 (904)
-.++|+|..|+|||||+..+.... ...|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999999876 678877777654
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.02 Score=60.96 Aligned_cols=164 Identities=13% Similarity=0.069 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccc------------------CCCCCCEEEEEEecCCCCHH
Q 037222 165 SQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLE------------------SPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------~~~~f~~~~wv~vs~~~~~~ 225 (904)
....++.+.+..+. ...+.+.|+.|+||+++|+.++....- ...|.|.. |+.-...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCcC----
Confidence 44566677776554 457889999999999999998776521 01222221 2211000
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEec
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATR 298 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR 298 (904)
. ..-..++. +.+.+.+ .+++=++|+|+++.. .....+...+. .-..++.+|++|.
T Consensus 85 -------------~---~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~ 146 (319)
T PRK06090 85 -------------G---KSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTH 146 (319)
T ss_pred -------------C---CcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEEC
Confidence 0 01122222 2222332 244568899999753 33444444443 3344566666666
Q ss_pred ch-hhh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 299 FI-DVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 299 ~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
+. .+. ...+....+.+.+++.+++.+.+.+.. . + .+..++..++|.|+.+..+
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-~------~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-I------T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-C------c----hHHHHHHHcCCCHHHHHHH
Confidence 54 443 334456789999999999999886531 1 1 1346789999999977654
No 197
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=7.8e-05 Score=86.38 Aligned_cols=137 Identities=20% Similarity=0.128 Sum_probs=73.6
Q ss_pred ccccCcEeecccC-cccc--cchhhhcCCCCcEeecccc-ccccccc---hhhhcCCCCCceeeecccCCcccccCCCCc
Q 037222 587 KLGSLELFDISRT-EIQE--LPEELKLLVNLKCLNLRWT-SKLIRIP---RQLISNSSGLRVLRMFATGYECFHEAPEDS 659 (904)
Q Consensus 587 ~L~~L~~L~l~~~-~i~~--Lp~~~~~L~~L~~L~l~~~-~~l~~lp---~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 659 (904)
.+++|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ ......+.+|++|++..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--------- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--------- 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence 3677888888777 5554 4345667888888888873 2222222 112345677888888776532
Q ss_pred cccCCCccchHhhcC-CCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecc
Q 037222 660 VLFGGGEVLVQELLG-LKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYE 737 (904)
Q Consensus 660 ~~~~~~~~~~~~l~~-L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 737 (904)
+...+..+.. +++|+.|.+..+....-..+......++.|+.|+|++|...+...+.....++++|+.|.+..
T Consensus 257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2233444433 566666664433221222222333334567777777766554333323344456555555443
No 198
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.00078 Score=64.21 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=55.9
Q ss_pred CceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcccc-ccccCcEeecccCcccccch--hhhcCCCCcE
Q 037222 540 DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMS-KLGSLELFDISRTEIQELPE--ELKLLVNLKC 616 (904)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~-~L~~L~~L~l~~~~i~~Lp~--~~~~L~~L~~ 616 (904)
+.-.++++ ++.+..++. |..++.|..|.|++| .|+ .+-..+. .+++|..|.|.+|+|.+|-. .+..+++|++
T Consensus 43 ~~d~iDLt-dNdl~~l~~--lp~l~rL~tLll~nN-rIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLT-DNDLRKLDN--LPHLPRLHTLLLNNN-RIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceeccc-ccchhhccc--CCCccccceEEecCC-cce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 44556666 555555544 666777777777777 666 4444444 34556777777666665522 3445566666
Q ss_pred eeccccccccccc---hhhhcCCCCCceeeecc
Q 037222 617 LNLRWTSKLIRIP---RQLISNSSGLRVLRMFA 646 (904)
Q Consensus 617 L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~ 646 (904)
|.+-+| .++.-+ ..++.++++|+.|+...
T Consensus 118 Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 666555 222222 12345555555555543
No 199
>PRK12377 putative replication protein; Provisional
Probab=97.02 E-value=0.0017 Score=66.58 Aligned_cols=74 Identities=26% Similarity=0.278 Sum_probs=46.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
+...+.++|.+|+|||+||.++++.. . ...-.++++++ .+++..|-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l-~--~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL-L--AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHH
Confidence 34678999999999999999999987 2 22233566643 3455555443321 11112 22222
Q ss_pred HcCCcEEEEecccc
Q 037222 258 LGEKRFVLLLDDLW 271 (904)
Q Consensus 258 l~~~r~LlVlDdv~ 271 (904)
+ .+.=||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 356689999994
No 200
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.021 Score=61.67 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccc-------------------CCCCCCEEEEEEecCCCCH
Q 037222 165 SQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLE-------------------SPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~~f~~~~wv~vs~~~~~ 224 (904)
..-+++.+.+..+. ...+.+.|+.|+||+|+|..++....- ...|.|.. ++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecccc---
Confidence 44566777777654 467789999999999999998776520 01222321 1110000
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT 297 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt 297 (904)
. ..-..++. +.+.+.+ .+++=++|+|+++.. ..-..+...+. .-..++.+|++|
T Consensus 85 --------------~---~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t 145 (334)
T PRK07993 85 --------------K---SSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLAC 145 (334)
T ss_pred --------------c---ccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEE
Confidence 0 00112222 2233322 356678999999753 23333433343 334466666666
Q ss_pred cch-hhh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 298 RFI-DVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 298 R~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
.+. .+. ...+....+.+.+++.+++...+.+..+.. .+.+..++..++|.|..+..
T Consensus 146 ~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 146 REPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred CChhhChHHHHhccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHHH
Confidence 654 443 333456788999999999998886543211 23366889999999975443
No 201
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.93 E-value=0.0016 Score=60.23 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999997
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.032 Score=65.40 Aligned_cols=105 Identities=22% Similarity=0.413 Sum_probs=63.6
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 228 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 228 (904)
..++|.+..+..+.+.+.. ....+....|+.|+|||-||++++.... +.=+..+-+..|+-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHHH----
Confidence 4679999999999988863 2456778899999999999999988762 11133344444432221
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcE-EEEecccccc
Q 037222 229 DDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRF-VLLLDDLWER 273 (904)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~ 273 (904)
..+.+-+|.+. ++-. .++ -..|-+.++.++| +|.||+++..
T Consensus 564 HsVSrLIGaPP-GYVG--yee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAPP-GYVG--YEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCCC-CCce--ecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 12223333322 1111 111 2234456677888 7778999753
No 203
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.84 E-value=0.054 Score=61.62 Aligned_cols=202 Identities=15% Similarity=0.113 Sum_probs=120.3
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcc-----cCCCCCCEEEEEEecCCCCHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFL-----ESPTNFDCVIWVVVSKDLRLEKI 227 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~f~~~~wv~vs~~~~~~~~ 227 (904)
..+-+|+.+..+|-+++.. +.-+.+.|.|-+|+|||..+..|.+... .....|+ .+.|..-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4467899999999988864 2345899999999999999999988551 1122343 344554555678999
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-----CCcEEEEecccccccc--cccccCCCCCCCCCCcEEEEEecc-
Q 037222 228 QDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG-----EKRFVLLLDDLWERVD--LTKVGVPLPGPQNTTSKVVFATRF- 299 (904)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~IivTtR~- 299 (904)
...|..++.... .......+.+..++. .+..++++|+++.-.. -+-+...|......+||++|-+=.
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999997643 334444555555553 3578888898853211 111111121123456766554321
Q ss_pred -hhhhcc-c-------cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHH
Q 037222 300 -IDVCGS-M-------EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRA 365 (904)
Q Consensus 300 -~~v~~~-~-------~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 365 (904)
.+.... + -....+...|.+.++-.+....+..+...-.....+-++++|+...|-.-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111110 0 02346777888888877777766644332233344555666666666666665554443
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.047 Score=58.83 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecc-hhhh-ccccCCceeecccCCHHHHHHHHHHhhCcccc
Q 037222 260 EKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRF-IDVC-GSMEADRKFLVACLSEKDAWELFREKVGEETL 335 (904)
Q Consensus 260 ~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 335 (904)
+++=++|+|+++.. .....+...+. .-..++.+|++|.+ ..+. ...+....+.+.+++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 45558889999754 34455544444 33456666655554 4443 33345678999999999999988765 11
Q ss_pred CCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 336 QSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 336 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
+. ...++..++|.|..+..+
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999765544
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.81 E-value=0.01 Score=72.02 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=92.7
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..++++.+.+.- ...+.|.++|++|+||||||+.+++.. ...| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~--- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP--- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH---
Confidence 3578999999988887631 134568899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc-------------ccccccCCCCCCCCCCc
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV-------------DLTKVGVPLPGPQNTTS 291 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------------~~~~~~~~l~~~~~~gs 291 (904)
++. ... ...........+.......+.+|++|+++... ....+...+.+....+.
T Consensus 247 -~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 111 000 11112222222333335567899999985310 01122222221112333
Q ss_pred EEEE-Eecchh-hhcccc----CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh
Q 037222 292 KVVF-ATRFID-VCGSME----ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL 357 (904)
Q Consensus 292 ~Iiv-TtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 357 (904)
.++| ||.... +...+. -...+.+...+.++-.+++...........+ .....+++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 4444 554332 211111 1346778888888888888865533221111 124567788888653
No 206
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.80 E-value=0.0047 Score=60.07 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=41.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++||-++.++++.-.-.+++.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4689999999998888888889999999999999999998888876
No 207
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.77 E-value=0.00022 Score=63.33 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=78.2
Q ss_pred ceeEEEeeccccccccCC--CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEee
Q 037222 518 NVTRLSLMQNQIKILSEV--PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFD 595 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~ 595 (904)
.+..+++++|.+..+|.. .+++.+++|++. ++.+.++|.+ +..|+.||.|+++.| .+. ..|.-|..|.+|-+|+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N-~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFN-PLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccC-ccc-cchHHHHHHHhHHHhc
Confidence 466788889988887663 677899999999 7889999999 899999999999999 888 8999999999999999
Q ss_pred cccCcccccchhhhc
Q 037222 596 ISRTEIQELPEELKL 610 (904)
Q Consensus 596 l~~~~i~~Lp~~~~~ 610 (904)
..++.+..+|-.+..
T Consensus 130 s~~na~~eid~dl~~ 144 (177)
T KOG4579|consen 130 SPENARAEIDVDLFY 144 (177)
T ss_pred CCCCccccCcHHHhc
Confidence 999999888877543
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.75 E-value=0.026 Score=59.01 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHH
Q 037222 165 SQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 228 (904)
Q Consensus 165 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 228 (904)
.-++++..++..+ .-|.+.|++|+|||++|+.++... .. ..+.++++...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3345555555432 345689999999999999998754 22 23556666655555544
No 209
>PRK08181 transposase; Validated
Probab=96.72 E-value=0.0021 Score=66.73 Aligned_cols=78 Identities=23% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 037222 172 RCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKA 251 (904)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 251 (904)
+|+. ...-+.++|++|+|||.||..+.+... ...-.++|+. ..+++..+..... ........
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHH
Confidence 4554 335589999999999999999998762 2223445653 3455555543321 11222222
Q ss_pred HHHHHHHcCCcEEEEeccccc
Q 037222 252 VDILRSLGEKRFVLLLDDLWE 272 (904)
Q Consensus 252 ~~l~~~l~~~r~LlVlDdv~~ 272 (904)
+.+. +.=||||||+..
T Consensus 163 ----~~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 163 ----AKLD-KFDLLILDDLAY 178 (269)
T ss_pred ----HHHh-cCCEEEEecccc
Confidence 2222 345999999953
No 210
>PHA00729 NTP-binding motif containing protein
Probab=96.71 E-value=0.0067 Score=60.56 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555566679999999999999999999875
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0023 Score=68.28 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999865 245889999999999999999999887
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.64 E-value=0.0016 Score=59.31 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 213
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.62 E-value=0.021 Score=59.07 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=102.2
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH-HHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE-KIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~ 232 (904)
..++|-.++..++..++.. ++..-+.|+|+.|.|||+|......+..+.+. ..+-|........+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E---~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGE---NFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCC---eEEEEEECccchhhHHHHHHHH
Confidence 4578999999999888864 45566788999999999999887777422233 33445555544332 2456666
Q ss_pred HHhCCCCC--CCCCCCHHHHHHHHHHHHcC------CcEEEEeccccccc-----c-cccccCCCCCCCCCCcEEEEEec
Q 037222 233 KKIGLSDD--SWKNKSFEEKAVDILRSLGE------KRFVLLLDDLWERV-----D-LTKVGVPLPGPQNTTSKVVFATR 298 (904)
Q Consensus 233 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------~r~LlVlDdv~~~~-----~-~~~~~~~l~~~~~~gs~IivTtR 298 (904)
+++..... .....+..+...++...|+. -+++.|+|.++.-. . +..+...-.....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 65532211 11234555566666666643 36888888886321 1 11111111102344566778999
Q ss_pred chhh-------hccccCCceeecccCCHHHHHHHHHHhhCc
Q 037222 299 FIDV-------CGSMEADRKFLVACLSEKDAWELFREKVGE 332 (904)
Q Consensus 299 ~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 332 (904)
-.-. -..+....++-++.++-++...++++....
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcC
Confidence 5432 222333345667888888888888877643
No 214
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.61 E-value=0.0066 Score=60.11 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSDDSW-KNKSFEEKAVDILR 256 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (904)
.+||.++|+.|+||||.+.+++... ... -..+..|+.... ....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999888887 322 334666665432 234566777788887653211 22344454444334
Q ss_pred HHcCCc-EEEEeccc
Q 037222 257 SLGEKR-FVLLLDDL 270 (904)
Q Consensus 257 ~l~~~r-~LlVlDdv 270 (904)
..+.++ =+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 343333 35666655
No 215
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.024 Score=64.34 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=88.6
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI 231 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 231 (904)
.+-+|.++-+++|++++.- -+-+++.++|++|+|||++|+.++... .+.|- =++|..-.|..+|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIK--- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhc---
Confidence 3458999999999999852 256899999999999999999999987 33331 23444444444431
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc---------cccccc---------CCCCCCCCCCcEE
Q 037222 232 GKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV---------DLTKVG---------VPLPGPQNTTSKV 293 (904)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---------~~~~~~---------~~l~~~~~~gs~I 293 (904)
.+...+-..-+...++.++.. +...-|+.+|.|+... .+-++. .....-.-.=|+|
T Consensus 482 -----GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred -----ccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 111111222223333333332 3345678889886421 111111 1111011123566
Q ss_pred EEEecchhh----hccccCCceeecccCCHHHHHHHHHHhh
Q 037222 294 VFATRFIDV----CGSMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 294 ivTtR~~~v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
++-.....+ ....+....|++.+...+|=.++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 543222222 1223445788999998888777766654
No 216
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.015 Score=65.39 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=107.9
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
+++||-+.-...|...+..+.. .--...|+-|+||||+|+-++... . ... + ...+.++.=...++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-N-C~~-----~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-N-CEN-----G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-c-CCC-----C-CCCCcchhhhhhHhhhcCCc
Confidence 4579999999999999887543 445678999999999999998876 1 111 0 11111121122233332200
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccc--cccccccccCCCCCCCCCCcEEEEEecc-hhh-hc
Q 037222 237 LSD---DSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLW--ERVDLTKVGVPLPGPQNTTSKVVFATRF-IDV-CG 304 (904)
Q Consensus 237 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~IivTtR~-~~v-~~ 304 (904)
... +.......++ ++.|.+.. +++.=+.|+|+|+ +...|..+...+. .-....+.|++|.+ ..+ ..
T Consensus 88 ~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchh
Confidence 000 0001111222 22222222 3455588999997 3456766666554 33445566665554 444 34
Q ss_pred cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 305 SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 305 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
.....+.|.++.++.++-...+...+........ ++....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 4456789999999999999999888865442222 344556666666644
No 217
>PRK06526 transposase; Provisional
Probab=96.58 E-value=0.0022 Score=66.26 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+.++|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.54 E-value=0.0043 Score=64.76 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 218 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 218 (904)
....+.++|..|+|||+||.++++.. . ...-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEH
Confidence 45678999999999999999999987 2 221234567653
No 219
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.54 E-value=0.0092 Score=61.07 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 227 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 227 (904)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 357899999999999999999988762 234678899876 5665554
No 220
>PRK09183 transposase/IS protein; Provisional
Probab=96.53 E-value=0.0038 Score=64.92 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+.|+|++|+|||+||..+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999998765
No 221
>PRK04296 thymidine kinase; Provisional
Probab=96.53 E-value=0.0029 Score=62.59 Aligned_cols=114 Identities=19% Similarity=0.102 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG 259 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (904)
.++.|.|..|.||||+|..+..+. . .+-..++.+. ..++.......+++.++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-E--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 467899999999999999998886 2 2222333332 1122222234456666543322112234444444444 33
Q ss_pred CCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchhh
Q 037222 260 EKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFIDV 302 (904)
Q Consensus 260 ~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~v 302 (904)
++.-+||+|.+.-- .+..++...+ ...|..||+|.+..+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCccc
Confidence 35558999999431 1122222221 3467889999997543
No 222
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.0071 Score=61.13 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQD 229 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 229 (904)
.-+++.|+|.+|+|||++|.+++... ...-..++|++... +++..+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 35789999999999999999988776 23346789998876 66665544
No 223
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.065 Score=60.62 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=84.4
Q ss_pred cccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 159 TVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
++=|.++-+.+|-+.+.- ...+-|..+|++|.|||++|+.+++.. +..| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 333466655555544431 356778899999999999999999986 4455 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc-------------ccccccCCCCCCCCC-Cc
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV-------------DLTKVGVPLPGPQNT-TS 291 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------------~~~~~~~~l~~~~~~-gs 291 (904)
+++.. +-..++..+...+.+.=+-.+.+|.||.++... .+..+..-+.+-... +-
T Consensus 503 EL~sk-----------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ELFSK-----------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHH-----------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 11110 011122222222222223456888888886410 122222223211112 22
Q ss_pred EEEEEecch-hhh-cccc---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHH
Q 037222 292 KVVFATRFI-DVC-GSME---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELA 345 (904)
Q Consensus 292 ~IivTtR~~-~v~-~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~ 345 (904)
-||-.|..+ .+- +.+. -.+.+.++.=+.+.-.++|+.++........-++++++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 333333333 332 2222 34567777777777888999998765533334445444
No 224
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.49 E-value=0.023 Score=64.29 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=89.9
Q ss_pred ccccchHHHHHHHHHHHh---c-------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E-------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 227 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 227 (904)
.++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. ...| +-+.++ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 356777766665554321 1 134568899999999999999999986 2222 112111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-HcCCcEEEEeccccccc----cc----------ccccCCCCCCCCCCcE
Q 037222 228 QDDIGKKIGLSDDSWKNKSFEEKAVDILRS-LGEKRFVLLLDDLWERV----DL----------TKVGVPLPGPQNTTSK 292 (904)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~----~~----------~~~~~~l~~~~~~gs~ 292 (904)
.. . +...+.. ....+... -...+.+|++|+++... .. ..+...+. ....+.-
T Consensus 296 ~~----~-------~vGese~-~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~ 362 (489)
T CHL00195 296 FG----G-------IVGESES-RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVF 362 (489)
T ss_pred cc----c-------ccChHHH-HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceE
Confidence 10 0 0111222 22222222 23578999999996321 00 01111111 2233444
Q ss_pred EEEEecchhh-hccc----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 293 VVFATRFIDV-CGSM----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 293 IivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
||.||..... ...+ .-...+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 5667765432 1111 123577888889999999998887543211101 112346666666653
No 225
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00028 Score=70.25 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=30.0
Q ss_pred ccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCC
Q 037222 587 KLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 587 ~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 649 (904)
.++.|+.|.|+-|+|+.| ..+..|++|+.|+|+.| .|..+.. .-+.+|++|+.|.+..|..
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCc
Confidence 344444444444444444 23445555556666555 4444432 1134566666666655544
No 226
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.098 Score=58.86 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
...+|+|+|.+|+||||++.++.... ........+..++... .....+-++...+.++.... ...+...+...+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 35799999999999999999988765 2222223455554322 11122223333333433221 112233333333 3
Q ss_pred HHcCCcEEEEecccc
Q 037222 257 SLGEKRFVLLLDDLW 271 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~ 271 (904)
.+.+ .=+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4577788863
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.46 E-value=0.023 Score=58.22 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC----C---CCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDD----S---WKNKS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 246 (904)
.-.++.|+|.+|+|||+||.+++... .... .=..++|++....++...+.+ +.+..+...+ . ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCC
Confidence 45789999999999999999998765 1111 115678999887777655543 3333221110 0 01234
Q ss_pred HHHHHHHHHHHHc----CCcEEEEecccc
Q 037222 247 FEEKAVDILRSLG----EKRFVLLLDDLW 271 (904)
Q Consensus 247 ~~~~~~~l~~~l~----~~r~LlVlDdv~ 271 (904)
.++....+....+ .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555544444432 345588899874
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.44 E-value=0.03 Score=67.94 Aligned_cols=171 Identities=20% Similarity=0.255 Sum_probs=94.4
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..++.+.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.++.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3467888887777766531 134558899999999999999999986 2232 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc--------c------cccccCCCCC-CCC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV--------D------LTKVGVPLPG-PQN 288 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~--------~------~~~~~~~l~~-~~~ 288 (904)
.++ +... ...+ +.....+.... +..+.+|++|+++.-. . ...+...+.+ ...
T Consensus 521 ~~l----~~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 PEI----LSKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HHH----hhcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111 1110 1112 22333333333 4568999999986310 0 1112222221 122
Q ss_pred CCcEEEEEecchhhhcc-c----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 289 TTSKVVFATRFIDVCGS-M----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 289 ~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
.+.-||.||...+.... + .-...+.+...+.++-.++|..+..........+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 34456667765544221 1 1245788888899999999977664433222222 345667777754
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.44 E-value=0.0052 Score=65.94 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 218 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 218 (904)
...+.++|..|+|||+||..+++.. . ...+ .++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l-~-~~g~-~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL-L-DRGK-SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH-H-HCCC-eEEEEEH
Confidence 3779999999999999999999987 2 2232 4566643
No 230
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.37 E-value=0.0088 Score=72.26 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+.+.+.. ....++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578888888888887753 124568899999999999999999876
No 231
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.37 E-value=0.0072 Score=73.60 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.||+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999988742 134578999999999999999998876
No 232
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.36 E-value=0.026 Score=69.02 Aligned_cols=46 Identities=28% Similarity=0.428 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+...+.. ....++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888888753 123578899999999999999999875
No 233
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.34 E-value=0.05 Score=54.15 Aligned_cols=170 Identities=15% Similarity=0.235 Sum_probs=97.4
Q ss_pred ccccchHHHHHH---HHHHHhcC------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHH
Q 037222 158 RTVVGLQSQLEQ---VWRCLVEE------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 228 (904)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 228 (904)
.+++|.+..+.+ |++.|.+. ..+-|..+|++|.|||-+|+++++.. ++ .| +-| . ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-kv--p~---l~v--k----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-KV--PL---LLV--K----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-CC--ce---EEe--c----hHHH-
Confidence 457898876554 66677652 57889999999999999999999987 22 22 111 1 1111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc----------cccc----cccCCCCC-CCCCCcE
Q 037222 229 DDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER----------VDLT----KVGVPLPG-PQNTTSK 292 (904)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~----------~~~~----~~~~~l~~-~~~~gs~ 292 (904)
|.+.. .+....++.+.+.- +.-++++.+|.++.. .+.. .+..-+.+ ..+.|..
T Consensus 188 --iGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111 12334444554444 346899999998631 1211 12222221 2345666
Q ss_pred EEEEecchhhhccccC---CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 293 VVFATRFIDVCGSMEA---DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 293 IivTtR~~~v~~~~~~---~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
.|-+|.+.++.+..-. ...++...-+++|-.+++...+..-..+.... .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 6666766665433211 23566666788888898888875433222222 34566666664
No 234
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.33 E-value=0.11 Score=56.64 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 164 QSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 164 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.-.+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566666664 467899999999999999999999988
No 235
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.32 E-value=0.015 Score=71.36 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999988641 24578899999999999999999876
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.017 Score=59.64 Aligned_cols=92 Identities=16% Similarity=0.277 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS-------WKNKS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 246 (904)
.-.++.|+|.+|+||||||.+++... .... ....++|++....++..++.+ +++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 45789999999999999999997654 1122 135789999888777655433 34443321110 01112
Q ss_pred HH---HHHHHHHHHH-cC-CcEEEEecccc
Q 037222 247 FE---EKAVDILRSL-GE-KRFVLLLDDLW 271 (904)
Q Consensus 247 ~~---~~~~~l~~~l-~~-~r~LlVlDdv~ 271 (904)
.+ .....+.+.+ +. +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 2333444444 23 56688888873
No 237
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.27 E-value=0.018 Score=59.72 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES----PTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.-.+.=|+|.+|+|||.||.+++-.. .. ...=..++||+....|+++++. +|++..+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 34688899999999999998887654 21 1223469999999889888775 4666654
No 238
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.075 Score=57.15 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=38.8
Q ss_pred CCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hhcc-ccCCceeecccCCHHHHHHHHHHh
Q 037222 260 EKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VCGS-MEADRKFLVACLSEKDAWELFREK 329 (904)
Q Consensus 260 ~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~ 329 (904)
+++-++|+|++..- ..-..+...+. ....++.+|++|.+.+ +... ......+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34445566777542 22222222222 1123455676776643 4322 234578899999999999888654
No 239
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.23 E-value=0.029 Score=57.01 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 223 (904)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45789999999999999999998876 12334678887655543
No 240
>PRK06696 uridine kinase; Validated
Probab=96.23 E-value=0.0067 Score=61.87 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 162 GLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 162 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|++-+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777777777753 467899999999999999999999886
No 241
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.039 Score=64.74 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=91.0
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC----CEEEEEEecCCCCHHHHHHHHHHH
Q 037222 159 TVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF----DCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.++||++++.++++-|....-.--.++|.+|+|||+++.-++.+. ...+-. +..++. -+|..-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s------------LD~g~L 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS------------LDLGSL 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE------------ecHHHH
Confidence 369999999999999976433333467999999999998888876 222111 111111 011111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEeccccccc----------ccccccCCCCCCCCCCcEEEEEecchhhh
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLG-EKRFVLLLDDLWERV----------DLTKVGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~----------~~~~~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
..... -..+.+++...+.+.++ .++.++.+|.+++.. +-..+..|-. ..+ .-+.|-.|...+.-
T Consensus 238 vAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARG-eL~~IGATT~~EYR 312 (786)
T COG0542 238 VAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARG-ELRCIGATTLDEYR 312 (786)
T ss_pred hcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcC-CeEEEEeccHHHHH
Confidence 11111 34567777777777674 458999999998631 1112222211 112 23555555444332
Q ss_pred -------ccccCCceeecccCCHHHHHHHHHHhh
Q 037222 304 -------GSMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 304 -------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
+.....+.+.++.-+.+++...++-..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222345678889999999999887654
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.032 Score=57.11 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC
Q 037222 166 QLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWK 243 (904)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 243 (904)
.+..+.++... .+...+.++|.+|+|||+||..+++.. .. .-..+++++ ..+++..+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l-~~--~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL-LL--RGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444433 234578999999999999999999987 22 223456663 44555554443321 1
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 037222 244 NKSFEEKAVDILRSLGEKRFVLLLDDLWE 272 (904)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 272 (904)
..+.+ .+.+.+. +.=+||+||+..
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 11222 2333344 344788899954
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.16 E-value=0.01 Score=57.99 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEE
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 216 (904)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999987 2345555555
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.02 Score=59.24 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
+..-+.++|.+|+|||.||.++.+.. . +..+ .+.+++ ..++..++....... ....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~-sv~f~~------~~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGI-SVLFIT------APDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEEE------HHHHHHHHHHHHhcC----------chHHHHHHH
Confidence 56778999999999999999999998 3 3333 455553 456666666655321 111222222
Q ss_pred HcCCcEEEEeccccc
Q 037222 258 LGEKRFVLLLDDLWE 272 (904)
Q Consensus 258 l~~~r~LlVlDdv~~ 272 (904)
+ .+-=||||||+-.
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 2 2334889999953
No 245
>PRK06762 hypothetical protein; Provisional
Probab=96.15 E-value=0.074 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.15 E-value=0.014 Score=61.90 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-+++-|+|++|+||||||.++.... ...-..++||+.-+.++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999987776 2233567899777666553 34555543211 1223455555555
Q ss_pred HHHHc-CCcEEEEecccc
Q 037222 255 LRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~ 271 (904)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456789999984
No 247
>PRK04132 replication factor C small subunit; Provisional
Probab=96.14 E-value=0.072 Score=63.92 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=91.8
Q ss_pred CCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEE
Q 037222 187 MGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVL 265 (904)
Q Consensus 187 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 265 (904)
|.++||||+|..+++... .+.+ ...+-++.|.......+ +++++.+.... +. -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~---~~-------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVI-REKVKEFARTK---PI-------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHH-HHHHHHHHhcC---Cc-------------CCCCCEEE
Confidence 788999999999999862 2223 23566666655444433 33333221110 00 01245799
Q ss_pred Eecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccH
Q 037222 266 LLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDI 341 (904)
Q Consensus 266 VlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~ 341 (904)
|+|+++.. .....+...+. .-...+++|+++.+. .+.. .......+.+.+++.++....+...+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 99999864 34555554443 323456666655543 4322 2334678999999999998888776643221211
Q ss_pred HHHHHHHHHHhCCchhHHHHH
Q 037222 342 VELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 342 ~~~~~~i~~~c~GlPLai~~~ 362 (904)
++....|++.++|.+-.+..+
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 456789999999988544433
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00069 Score=67.51 Aligned_cols=102 Identities=22% Similarity=0.172 Sum_probs=75.9
Q ss_pred CCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccch--hhhcCCCCc
Q 037222 538 CPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPE--ELKLLVNLK 615 (904)
Q Consensus 538 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~--~~~~L~~L~ 615 (904)
+.+.+.|++.+ ..+.+|. +...|+.|+||.||-| .|+ .+ ..+..+++|+.|.|+.|.|..|-+ .+.+|++|+
T Consensus 18 l~~vkKLNcwg-~~L~DIs--ic~kMp~lEVLsLSvN-kIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWG-CGLDDIS--ICEKMPLLEVLSLSVN-KIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccC-CCccHHH--HHHhcccceeEEeecc-ccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45566677773 4466664 3678999999999999 887 66 367788999999999998877743 567889999
Q ss_pred Eeeccccccccccch----hhhcCCCCCceeeec
Q 037222 616 CLNLRWTSKLIRIPR----QLISNSSGLRVLRMF 645 (904)
Q Consensus 616 ~L~l~~~~~l~~lp~----~~i~~L~~L~~L~l~ 645 (904)
.|-|..|+....-+. .++.-|++|+.|+-.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 998887765555442 356778888888743
No 249
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.037 Score=60.27 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=78.6
Q ss_pred ccchHHHHHHHHHHHhc-CCce-EEEEEcCCCCcHHHHHHHHHHhcccCCC------------------CCCEEEEEEec
Q 037222 160 VVGLQSQLEQVWRCLVE-ESVG-IIGLYGMGGVGKTTLLTHINNKFLESPT------------------NFDCVIWVVVS 219 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~vs 219 (904)
++|-+....++..+... ++.+ .+.++|++|+||||+|..+++...-... ..+.+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777888888888874 3344 4999999999999999999988721000 11233344333
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--ccccccCCCCCCCCCCcEEE
Q 037222 220 KDLR---LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVV 294 (904)
Q Consensus 220 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~Ii 294 (904)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+. .....+.+|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~i 143 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRFI 143 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEEE
Confidence 3332 23333333333322110 3567899999997532 2233333333 334567788
Q ss_pred EEecch-hhhc-cccCCceeecccC
Q 037222 295 FATRFI-DVCG-SMEADRKFLVACL 317 (904)
Q Consensus 295 vTtR~~-~v~~-~~~~~~~~~l~~L 317 (904)
++|... .+.. .......+++.+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCc
Confidence 777733 3322 1223456666663
No 250
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.06 E-value=0.016 Score=61.55 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-+++-|+|++|+||||||.+++... ...-..++||+.-+.+++. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35688899999999999999987765 2334568899887776653 34444432211 1223455555555
Q ss_pred HHHHc-CCcEEEEecccc
Q 037222 255 LRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~ 271 (904)
...++ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55553 456789999984
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.03 E-value=0.036 Score=53.23 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 223 (904)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 36899999999999999998887 22345678887765543
No 252
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.02 E-value=0.021 Score=58.97 Aligned_cols=91 Identities=19% Similarity=0.337 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 249 (904)
.-..++|+|..|+|||||++.+++.. ..+| +..+++.+.+.. .+.++.+++.+.-.... ...+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44678999999999999999999987 2234 456777777764 35566666654321110 0111111121
Q ss_pred ----HHHHHHHHH--c-CCcEEEEecccc
Q 037222 250 ----KAVDILRSL--G-EKRFVLLLDDLW 271 (904)
Q Consensus 250 ----~~~~l~~~l--~-~~r~LlVlDdv~ 271 (904)
..-.+.+++ + ++.+|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 122345555 3 899999999983
No 253
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.00 E-value=0.0045 Score=61.66 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=49.7
Q ss_pred CCcccEEEeecCCCcc----cccCccccccccCcEeecccCcc----cccc-------hhhhcCCCCcEeeccccccccc
Q 037222 563 MPSLKVLKISNCGNFT----FQLPLGMSKLGSLELFDISRTEI----QELP-------EELKLLVNLKCLNLRWTSKLIR 627 (904)
Q Consensus 563 l~~Lr~L~l~~~~~i~----~~lp~~i~~L~~L~~L~l~~~~i----~~Lp-------~~~~~L~~L~~L~l~~~~~l~~ 627 (904)
|..+..++||+| -|. ..+...|.+-.+|+..+++.-.. .++| ..+-+|++|+..+|+.|..-..
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 555666666666 443 12333344455666666654211 1222 3345678888888887755444
Q ss_pred cch---hhhcCCCCCceeeecccCCc
Q 037222 628 IPR---QLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 628 lp~---~~i~~L~~L~~L~l~~~~~~ 650 (904)
.|. ..|++-+.|.||.+.+|+..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 443 33667778888888877653
No 254
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.00 E-value=0.0078 Score=67.64 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHHh------cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQSQLEQVWRCLV------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+++|.++.+++|++.|. +...+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999993 2456899999999999999999999987
No 255
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0024 Score=63.78 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=28.1
Q ss_pred cCCCcccEEEeecCCCcccccCccccccccCcEeecccC--ccc-ccchhhhcCCCCcEeecccc
Q 037222 561 QFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT--EIQ-ELPEELKLLVNLKCLNLRWT 622 (904)
Q Consensus 561 ~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~--~i~-~Lp~~~~~L~~L~~L~l~~~ 622 (904)
..+..|..|++.++ .++ .+ ..+-.|++|++|.++.| .+. .++....++++|++|++++|
T Consensus 40 d~~~~le~ls~~n~-glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred ccccchhhhhhhcc-cee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 33445555555555 443 22 12334555566666555 221 33333444455555555555
No 256
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0032 Score=62.86 Aligned_cols=109 Identities=25% Similarity=0.279 Sum_probs=67.7
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCC-CcccccCccccccccCcEeecccCcccccc--hhhhcCC
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCG-NFTFQLPLGMSKLGSLELFDISRTEIQELP--EELKLLV 612 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~-~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp--~~~~~L~ 612 (904)
..+..|..|.+. +..+..+-. |..|++|+.|+++.|. .+.+.++-..-++++|++|++++|+|+.+. ..+..+.
T Consensus 40 d~~~~le~ls~~-n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVI-NVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhh-ccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 344555555555 333333322 5668889999998871 122245555556689999999999776531 2355677
Q ss_pred CCcEeeccccccccccc---hhhhcCCCCCceeeecccC
Q 037222 613 NLKCLNLRWTSKLIRIP---RQLISNSSGLRVLRMFATG 648 (904)
Q Consensus 613 ~L~~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~~~ 648 (904)
+|..|++.+|. .+.+- ..++.-+++|..|+-..+.
T Consensus 117 nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 88888888883 33332 3445667777777766543
No 257
>PRK09354 recA recombinase A; Provisional
Probab=95.97 E-value=0.02 Score=61.42 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-+++-|+|++|+||||||.+++... ...-...+||..-+.+++. .+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35788999999999999999988776 2334678899888777753 34555543211 1223455555555
Q ss_pred HHHHc-CCcEEEEecccc
Q 037222 255 LRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~ 271 (904)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456789999984
No 258
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.022 Score=56.19 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
.+-+|+|.|.+|+||||+|+.++... . ... +.-++...-+ ...-...+.+......+.....+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~-~--~~~--~~~I~~D~YY-k~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL-G--VEK--VVVISLDDYY-KDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh-C--cCc--ceEeeccccc-cchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35789999999999999999999988 2 221 1111111111 1111111122222222223456777788888888
Q ss_pred HcCCc
Q 037222 258 LGEKR 262 (904)
Q Consensus 258 l~~~r 262 (904)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 259
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.96 E-value=0.041 Score=67.45 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------E--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999888752 1 23467789999999999999999876
No 260
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.94 E-value=0.021 Score=55.37 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccC--CC---CCC--EEEEEEecCCCCHHHHHHHHHHHhCCCCC----CCCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES--PT---NFD--CVIWVVVSKDLRLEKIQDDIGKKIGLSDD----SWKNKS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 246 (904)
.-.+++|+|+.|+|||||.+.+..+.-++ .. .|. .+.|+ .+ .+.++.++.... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999986432010 10 111 12232 22 355666665321 111122
Q ss_pred HHH-HHHHHHHHHcCC--cEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhhhccccCCceeec
Q 037222 247 FEE-KAVDILRSLGEK--RFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDVCGSMEADRKFLV 314 (904)
Q Consensus 247 ~~~-~~~~l~~~l~~~--r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 314 (904)
..+ ..-.+...+..+ +-++++|+.-...+ .+.+...+......|..||++|.+.+.... ....+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 222 223444555556 77888899854322 222222222011246678888887766532 3344444
No 261
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.93 E-value=0.052 Score=58.66 Aligned_cols=57 Identities=21% Similarity=0.422 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.-.++-|+|.+|+|||++|.+++... ..... =..++||+..+++++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 45788899999999999999998764 21111 14799999998888877654 445444
No 262
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.93 E-value=0.025 Score=55.16 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++.+.|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 263
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.018 Score=65.52 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
.-+++.++|++|+||||||+-+++.. .| .++=|..|...+...+-..|...+..+. .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45789999999999999999999875 33 2566677777666666666655554322 1
Q ss_pred H--cCCcEEEEeccccc
Q 037222 258 L--GEKRFVLLLDDLWE 272 (904)
Q Consensus 258 l--~~~r~LlVlDdv~~ 272 (904)
+ .+++..+|+|.++.
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 25788899999975
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.89 E-value=0.044 Score=58.51 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (904)
.-+++-|+|.+|+|||+|+.+++-.. ... ..=..++||+.-.+|+++++.+ +++.++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 35788899999999999998876543 111 1224789999999999888754 56666543
No 265
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.88 E-value=0.045 Score=56.37 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI 231 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 231 (904)
.-+++.|.|.+|+|||++|.++.... -..-...+||+..+ ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 45789999999999999999876654 12345788888765 455555553
No 266
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.87 E-value=0.0063 Score=60.70 Aligned_cols=167 Identities=20% Similarity=0.157 Sum_probs=78.6
Q ss_pred hcCCCcccEEEeecC--CCcccccCcc-------ccccccCcEeecccCccc-ccc----hhhhcCCCCcEeeccccccc
Q 037222 560 FQFMPSLKVLKISNC--GNFTFQLPLG-------MSKLGSLELFDISRTEIQ-ELP----EELKLLVNLKCLNLRWTSKL 625 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~--~~i~~~lp~~-------i~~L~~L~~L~l~~~~i~-~Lp----~~~~~L~~L~~L~l~~~~~l 625 (904)
+.+-++|++.++++. +...+.+|++ +-++++|+..+||.|-+. ..| .-+.+-+.|.||.+++| .+
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-Gl 132 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GL 132 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CC
Confidence 344556666666543 1111233332 345677777777777442 223 23556677888888777 44
Q ss_pred cccchhhh-------------cCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhh--
Q 037222 626 IRIPRQLI-------------SNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQA-- 690 (904)
Q Consensus 626 ~~lp~~~i-------------~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-- 690 (904)
..+..+-| ..-+.|+...+..|+...... ...-.-+.+-.+|+.+.+.-|....
T Consensus 133 Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~-----------~~~a~~l~sh~~lk~vki~qNgIrpeg 201 (388)
T COG5238 133 GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK-----------ELSAALLESHENLKEVKIQQNGIRPEG 201 (388)
T ss_pred CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH-----------HHHHHHHHhhcCceeEEeeecCcCcch
Confidence 43332212 234566776666665542110 1111122233456666665444321
Q ss_pred HHHhhh-cccccccceeeEecccCCC--cchhhhhhhcccCccCceeeccc
Q 037222 691 LQIFLS-SNKLKSCIRSLFLQLAGDT--KSIIDAAAFADLNHLNELYIYEG 738 (904)
Q Consensus 691 ~~~l~~-~~~~~~~L~~L~L~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~ 738 (904)
+..+.. ....+.+|+.|+|.++.-. .+..+...++.++.|++|.+..|
T Consensus 202 v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 202 VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 111111 1122345566666554211 12222234555666666666655
No 267
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.87 E-value=0.02 Score=68.41 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|.+..++.|.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999988888762 124578899999999999999998876
No 268
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.2 Score=49.50 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=98.3
Q ss_pred ccc-hHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 160 VVG-LQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 160 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
++| .+..+++|.+.+.- .+.+-+.++|++|.|||-||+.|+++- ..-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 455 57777777666531 256678899999999999999999875 2456777753 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc----------c------cccccCCCCC-CC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV----------D------LTKVGVPLPG-PQ 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------~------~~~~~~~l~~-~~ 287 (904)
-+++.|.+ ...+.+.+.-.- ..-+-+|..|.+++.. + .-++...+.+ ..
T Consensus 217 lvqk~ige-------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGE-------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhh-------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 11221111 112222222222 2346677778776410 0 0112222211 23
Q ss_pred CCCcEEEEEecchhhhccc-----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 288 NTTSKVVFATRFIDVCGSM-----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.+.-+||.+|..-++.+.. .-...++..+-+++.-.++++-+....+....-++..+|.++..-.|.--.++-+-
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 4566888877766653321 12456788888887777777766544332333445555555443333333344444
Q ss_pred HHH
Q 037222 363 GRA 365 (904)
Q Consensus 363 ~~~ 365 (904)
|++
T Consensus 364 agm 366 (404)
T KOG0728|consen 364 AGM 366 (404)
T ss_pred hhH
Confidence 444
No 269
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.019 Score=62.67 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=35.7
Q ss_pred cccchHH---HHHHHHHHHhcC--------C-ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQS---QLEQVWRCLVEE--------S-VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++-|-|+ ++++|+++|.+. + .+-|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4566654 677888888762 2 4568899999999999999999886
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.82 E-value=0.044 Score=58.36 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 037222 162 GLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 162 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (904)
++........+++.. ...+-+.++|..|+|||.||.++++.. . ...+. +.|+++ .+++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l-~-~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL-A-KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH-H-HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 455555555566553 134678999999999999999999998 2 33333 455543 3566666555421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--ccccc--ccCCC-CCCC-CCCcEEEEEec
Q 037222 238 SDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTK--VGVPL-PGPQ-NTTSKVVFATR 298 (904)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~--~~~~l-~~~~-~~gs~IivTtR 298 (904)
.+..+. .+.++ +-=||||||+... .+|.. +...+ . .. ..+-.+|+||.
T Consensus 206 -------~~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~-~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQ-YRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHH-HHHHCCCeEEEECC
Confidence 112222 22232 4568999999532 44543 32222 1 11 23456777777
No 271
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.81 E-value=0.036 Score=61.55 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH--HHHHHHHHHHhCCCCCCC-CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKIQDDIGKKIGLSDDSW-KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 254 (904)
...++.++|.+|+||||.|..++... ..+..+ .++.|++. .+.+ .+-+....+..+.+.... ...++.......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 46799999999999999999988775 211222 33334332 2222 233344445554432111 123344444444
Q ss_pred HHHHcCCcE-EEEeccc
Q 037222 255 LRSLGEKRF-VLLLDDL 270 (904)
Q Consensus 255 ~~~l~~~r~-LlVlDdv 270 (904)
.+....+.| ++|+|-.
T Consensus 175 l~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 444434444 6666665
No 272
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.81 E-value=0.031 Score=53.15 Aligned_cols=124 Identities=23% Similarity=0.232 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE---------------------ecCCC--------------
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV---------------------VSKDL-------------- 222 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------vs~~~-------------- 222 (904)
.-..+.++|+.|.||||+.+.+|... +. =...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45689999999999999999999886 21 12234441 11111
Q ss_pred -------CHHHHHH---HHHHHhCCCCCC----CCCCCHHHHHHHHHHHHcCCcEEEEecccc----cccccccccCCCC
Q 037222 223 -------RLEKIQD---DIGKKIGLSDDS----WKNKSFEEKAVDILRSLGEKRFVLLLDDLW----ERVDLTKVGVPLP 284 (904)
Q Consensus 223 -------~~~~~~~---~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~----~~~~~~~~~~~l~ 284 (904)
...++-+ +.++..++.... ..-..-++..-.|.+.+-+++-+++=|.-- -+..|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1222222 223333332210 012223333345666677888888888753 2234544432222
Q ss_pred CCCCCCcEEEEEecchhhhccc
Q 037222 285 GPQNTTSKVVFATRFIDVCGSM 306 (904)
Q Consensus 285 ~~~~~gs~IivTtR~~~v~~~~ 306 (904)
-+..|+.|+++|-+.++...+
T Consensus 183 -inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 183 -INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred -HhhcCcEEEEEeccHHHHHhc
Confidence 456799999999999887665
No 273
>PRK06547 hypothetical protein; Provisional
Probab=95.80 E-value=0.013 Score=56.59 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555678899999999999999999998875
No 274
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.018 Score=53.13 Aligned_cols=44 Identities=25% Similarity=0.478 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (904)
+|.|-|++|+||||+|+.++++. .-.| | +.-.++++|++..++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999987 1111 1 3457889999988765
No 275
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.74 E-value=0.058 Score=60.18 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSDDSW-KNKSFEEKAVDIL 255 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (904)
...+|.++|.+|+||||.|..++... .. ..+ .+..|++... ....+-+..+.++++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46789999999999999999999877 32 223 3344443221 122444566666665542111 1223333333333
Q ss_pred HHHcCCcEEEEeccc
Q 037222 256 RSLGEKRFVLLLDDL 270 (904)
Q Consensus 256 ~~l~~~r~LlVlDdv 270 (904)
+.+.+. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 334443 45777776
No 276
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.74 E-value=0.067 Score=53.23 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=46.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCC---EEEEEEecCCCCHHHHHHHHHHHh--CCCCCCCCCCCHHHHHHHHH
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFD---CVIWVVVSKDLRLEKIQDDIGKKI--GLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~vs~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 255 (904)
||+|.|.+|+||||+|+.+.... . ..... ....+....-......... -... ..........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~-~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-N-KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-T-TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C-ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 79999999999999999999988 2 22222 2333333222222222221 1111 11111224457777777777
Q ss_pred HHHcCCcEEE
Q 037222 256 RSLGEKRFVL 265 (904)
Q Consensus 256 ~~l~~~r~Ll 265 (904)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666444
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=95.73 E-value=0.041 Score=61.20 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999988887765
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.012 Score=54.31 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEE
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCV 213 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 213 (904)
..-|+|.|++|+||||+++.+.+.. + .+.|...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L-~-~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL-R-EKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH-H-hcCceee
Confidence 3468999999999999999999988 3 2335543
No 279
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.69 E-value=0.014 Score=58.29 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHH---HHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQD---DIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
++|.|+|+.|+||||++..+.... .......+++- ..+. +.... .+..+-. ...+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPI--EFVHESKRSLINQRE------VGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCc--cccccCccceeeecc------cCCCccCHHHHHHH
Confidence 578999999999999999887776 22333333332 1111 10000 0111100 01112234556677
Q ss_pred HHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhh
Q 037222 257 SLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDV 302 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v 302 (904)
.++..+=++++|++.+......+... ...|-.++.|+-..++
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSA 111 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcH
Confidence 77777789999999766544433222 1235557777765544
No 280
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.67 E-value=0.069 Score=57.55 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccc---CCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (904)
.-+++-|+|.+|+|||+|+.+++-.... ....-..++||+.-.+|+++++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3567889999999999999988644311 011224789999999999888755 56666554
No 281
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.025 Score=63.98 Aligned_cols=71 Identities=27% Similarity=0.205 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDI--- 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--- 254 (904)
...-|.+.|+.|+|||+||+++++.+ . +...-.+.+|+++.-. ....+..+..+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~---------------------~~~~e~iQk~l~~v 486 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLD---------------------GSSLEKIQKFLNNV 486 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhcc---------------------chhHHHHHHHHHHH
Confidence 34568899999999999999999998 3 5555567777766431 11222222222
Q ss_pred -HHHHcCCcEEEEecccc
Q 037222 255 -LRSLGEKRFVLLLDDLW 271 (904)
Q Consensus 255 -~~~l~~~r~LlVlDdv~ 271 (904)
.+.+.-.+-+|||||++
T Consensus 487 fse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHHHhhCCcEEEEcchh
Confidence 23445578899999996
No 282
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.21 Score=58.35 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=100.6
Q ss_pred ccccchHHHHHHH---HHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQV---WRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.++.|-|+.+++| +++|... -.+-+.++|++|+|||-||++++... . +-|+.+|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----
Confidence 3567877655554 5555431 24568899999999999999999986 2 234555542
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc-----------------cccccccCCCCCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER-----------------VDLTKVGVPLPGPQ 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~-----------------~~~~~~~~~l~~~~ 287 (904)
+.++.+... . ..+++.+...- ...+.++.+|+++.. ..+.++..-+.+..
T Consensus 379 ----EFvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ----EFVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 222222111 1 23333444333 346888888988631 01223322232111
Q ss_pred C-CCcEEEEEecchhhhcc--c--c-CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 288 N-TTSKVVFATRFIDVCGS--M--E-ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 288 ~-~gs~IivTtR~~~v~~~--~--~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
. .+--++-+|+..++.+. + + -...+.++.=+.....++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2 22333445665555322 1 1 23567888888888899999888654322 45556666 888888877544
No 283
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.63 E-value=0.012 Score=54.93 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 161 VGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 161 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
||....+.++.+.+.. ....-|.|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777776654 345667899999999999999998876
No 284
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.59 E-value=0.052 Score=57.38 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
..++++|+|++|+||||++..++... .....-..+..|+..... ...+-+....+.++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 35799999999999999999998876 222111245555543211 122333334444444331 1223444443333
Q ss_pred HHcCCcEEEEecc
Q 037222 257 SLGEKRFVLLLDD 269 (904)
Q Consensus 257 ~l~~~r~LlVlDd 269 (904)
.+.+ .=+|++|.
T Consensus 269 ~~~~-~d~vliDt 280 (282)
T TIGR03499 269 RLRD-KDLILIDT 280 (282)
T ss_pred HccC-CCEEEEeC
Confidence 3333 34667775
No 285
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.59 E-value=0.089 Score=52.00 Aligned_cols=97 Identities=24% Similarity=0.317 Sum_probs=62.0
Q ss_pred ccccchHHHHHHHHHHH----hcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCL----VEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..++|.|..++.+++-- ..-...-|.+||.-|.||++|++++.+.+ ....-. -|.|++.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glr--LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLR--LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCe--EEEEcHH------------
Confidence 46799988888776643 22355678899999999999999999987 222222 2222221
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEeccccc---ccccccccCCCC
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSL--GEKRFVLLLDDLWE---RVDLTKVGVPLP 284 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~---~~~~~~~~~~l~ 284 (904)
+.. ....|.+.| ...||+|..||+.- +.....++..+.
T Consensus 123 ------------dl~-~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 123 ------------DLA-TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ------------HHh-hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 111 122344444 35799999999952 345666666665
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.048 Score=59.25 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
.-.+++++|+.|+||||++.++.... ........+.+++... .....+-++...+.++.+... ..+..++...+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 34699999999999999999999875 2111223455555322 123445555666666654321 11222232222 3
Q ss_pred HHcCCcEEEEecccc
Q 037222 257 SLGEKRFVLLLDDLW 271 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~ 271 (904)
.+.++. ++++|..-
T Consensus 212 ~l~~~D-lVLIDTaG 225 (374)
T PRK14722 212 ELRNKH-MVLIDTIG 225 (374)
T ss_pred HhcCCC-EEEEcCCC
Confidence 345554 45588874
No 287
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.54 E-value=0.053 Score=58.46 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (904)
.-.++-|+|.+|+||||++.+++... .... .-..++||+...+|+++++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35788999999999999999998765 2111 11379999998888887765 44555543
No 288
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.53 E-value=0.042 Score=57.18 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+..+++.+.+..+|.|.|.+|+|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455555689999999999999999999999886
No 289
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.52 E-value=0.011 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 290
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.52 E-value=0.13 Score=61.21 Aligned_cols=170 Identities=19% Similarity=0.194 Sum_probs=88.3
Q ss_pred cccchHHHHHHHHHH---Hhc---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHH
Q 037222 159 TVVGLQSQLEQVWRC---LVE---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 226 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 226 (904)
++.|.+..++++.+. +.. .-.+-|.++|++|+||||+|+.++... ...| +.+..+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 456766665555443 322 112348899999999999999998876 2232 222221 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc------------cc----ccccCCCCC-CCCC
Q 037222 227 IQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV------------DL----TKVGVPLPG-PQNT 289 (904)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------------~~----~~~~~~l~~-~~~~ 289 (904)
+.. .. ...........+...-...+.+|++|+++.-. .+ ..+...+.+ ....
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 00 01112222222333334578899999996421 01 111111111 1233
Q ss_pred CcEEEEEecchhhhcc-c----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 290 TSKVVFATRFIDVCGS-M----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 290 gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
+.-||.||...+.... . .-...+.+..-+.++-.+++..+.........-+ ...+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 4455667776654321 1 1235678888888888888888775433222222 23456666653
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.52 E-value=0.044 Score=59.98 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++. .-++.++...+.. ...+.+.....+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 357899999999999999999988762 22346788876543 33332 2234555432211 122333333332
Q ss_pred HHHHcCCcEEEEeccc
Q 037222 255 LRSLGEKRFVLLLDDL 270 (904)
Q Consensus 255 ~~~l~~~r~LlVlDdv 270 (904)
. +.+.-++|+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 235667888887
No 292
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.52 E-value=0.092 Score=56.65 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (904)
.-.++-|+|.+|+|||+||..++-.. ... ..-..++||+...+|.++++. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 35788899999999999999887554 111 122379999999999888764 556666543
No 293
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.52 E-value=0.033 Score=52.61 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC---CCCHHHHHHHHHHHh---CCCC-CCCCCCCHHH---
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK---DLRLEKIQDDIGKKI---GLSD-DSWKNKSFEE--- 249 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l---~~~~-~~~~~~~~~~--- 249 (904)
..|-|++..|.||||+|...+-+.. ...+ .+.+|..-+ ...-..++..+ ..+ .... ..+...+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 5788889999999999998887761 2333 344443322 22333333333 111 0000 0011111111
Q ss_pred ----HHHHHHHHHcC-CcEEEEecccccc-----cccccccCCCCCCCCCCcEEEEEecch
Q 037222 250 ----KAVDILRSLGE-KRFVLLLDDLWER-----VDLTKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 250 ----~~~~l~~~l~~-~r~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
..+..++.+.. +-=|+|||++-.. .+.+.+...+. ....+..||+|.|+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 11223334433 4459999999532 33444444444 445677999999974
No 294
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.52 E-value=0.083 Score=54.34 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC----------------
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---------------- 241 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------------- 241 (904)
.-+++.|.|.+|+||||||.++.... ...=..++|++..+. +.++.+.+ ++++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45789999999999999999986554 123357888888654 45555554 233321100
Q ss_pred --CCCCCHHHHHHHHHHHHcC-CcEEEEecccc
Q 037222 242 --WKNKSFEEKAVDILRSLGE-KRFVLLLDDLW 271 (904)
Q Consensus 242 --~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 271 (904)
....+.+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334556666666643 55578888874
No 295
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.51 E-value=0.064 Score=53.62 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=72.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE----------------------ecCCCC------------
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV----------------------VSKDLR------------ 223 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------vs~~~~------------ 223 (904)
.-.+++|+|+.|+|||||...+..-. +. =...+++. +.|.++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld-~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD-KP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc-CC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 44689999999999999999887554 11 11222221 122221
Q ss_pred ------------HHHHHHHHHHHhCCCCCC----C-CCCCHHHHHHHHHHHHcCCcEEEEecccccc---cccccccCCC
Q 037222 224 ------------LEKIQDDIGKKIGLSDDS----W-KNKSFEEKAVDILRSLGEKRFVLLLDDLWER---VDLTKVGVPL 283 (904)
Q Consensus 224 ------------~~~~~~~i~~~l~~~~~~----~-~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~~~~~l 283 (904)
..+....+++.+++.... . +-..-++..-.+.+.|...+-+|+-|+--.. ..-+.+...+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 123344555555554211 1 1122333334667778888888999986321 1111121112
Q ss_pred CC-CCCCCcEEEEEecchhhhccccCCceeec
Q 037222 284 PG-PQNTTSKVVFATRFIDVCGSMEADRKFLV 314 (904)
Q Consensus 284 ~~-~~~~gs~IivTtR~~~v~~~~~~~~~~~l 314 (904)
.. ....|..||+.|-+..+|..+ .+++.+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 10 234578899999999998854 344444
No 296
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.49 E-value=0.084 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+...+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999887
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.49 E-value=0.069 Score=57.23 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccc---CCCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (904)
.-.++.|+|.+|+|||||+..++..... ....-..++||+....++..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4678999999999999999998764311 1112236799998888888764 445565544
No 298
>PRK07667 uridine kinase; Provisional
Probab=95.48 E-value=0.02 Score=56.91 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=29.4
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 167 LEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 167 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 345799999999999999999999876
No 299
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.44 E-value=0.056 Score=52.92 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=63.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------------CCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS------------WKNK 245 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 245 (904)
.-.+++|.|..|+|||||++.+.... .. -...+++.-. ++......+-+.++.-... ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-KP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-CC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 44689999999999999999998875 21 1223333211 1111111111111100000 0111
Q ss_pred CH-HHHHHHHHHHHcCCcEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhhhccccCCceeec
Q 037222 246 SF-EEKAVDILRSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDVCGSMEADRKFLV 314 (904)
Q Consensus 246 ~~-~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 314 (904)
+. +...-.+...+-.++=++++|+.-+.-+ .+.+...+. ....+..||++|.+.+.... ..+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 2222345555667778899999865322 222222222 11235678888887766542 3444444
No 300
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.43 E-value=0.065 Score=54.49 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-----CCCHHHHHHHHHHHhCCCCCC---C-CCCCHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-----DLRLEKIQDDIGKKIGLSDDS---W-KNKSFE 248 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~---~-~~~~~~ 248 (904)
+-.+++++|..|+||||+++.+..-. + -. .+.++..-.+ .....+-..++++..+...+- . -.-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~-~--pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE-E--PT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc-C--CC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45789999999999999999999876 2 12 2333332111 112334556677776654321 1 112223
Q ss_pred HHH-HHHHHHHcCCcEEEEeccccccccc---ccccCCCCC-CCCCCcEEEEEecchhhhcccc
Q 037222 249 EKA-VDILRSLGEKRFVLLLDDLWERVDL---TKVGVPLPG-PQNTTSKVVFATRFIDVCGSME 307 (904)
Q Consensus 249 ~~~-~~l~~~l~~~r~LlVlDdv~~~~~~---~~~~~~l~~-~~~~gs~IivTtR~~~v~~~~~ 307 (904)
+++ -.+.+.|.-++-++|.|..-+..+. ..+...+.. ....|-..+..|-+-.++..+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 333 3466778889999999998543221 111111110 1223556677777766665543
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.43 E-value=0.013 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 302
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.42 E-value=0.063 Score=53.79 Aligned_cols=95 Identities=23% Similarity=0.390 Sum_probs=57.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCC
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSW 242 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~ 242 (904)
.++.+.. ..-..++|.|.+|+|||+|+..+.+.. .-+..+++.+.+.. .+.++.+++...-.... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t- 78 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAAT- 78 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE-
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhccccccccccccc-
Confidence 3445543 234678999999999999999999986 23455888887663 45566666644311100 00
Q ss_pred CCCCHHHH------HHHHHHHH--cCCcEEEEeccc
Q 037222 243 KNKSFEEK------AVDILRSL--GEKRFVLLLDDL 270 (904)
Q Consensus 243 ~~~~~~~~------~~~l~~~l--~~~r~LlVlDdv 270 (904)
........ .-.+.+++ +++..|+++||+
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred chhhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 11111111 11223333 689999999998
No 303
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.39 E-value=0.026 Score=54.96 Aligned_cols=74 Identities=30% Similarity=0.471 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
+..-+.++|..|+|||.||..+.+... ...+ .+.|+. ..+++..+-..- .....+. +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 346799999999999999999998862 2333 356664 445555553321 1112222 2233
Q ss_pred HcCCcEEEEeccccc
Q 037222 258 LGEKRFVLLLDDLWE 272 (904)
Q Consensus 258 l~~~r~LlVlDdv~~ 272 (904)
+.+ -=||||||+-.
T Consensus 106 l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LKR-VDLLILDDLGY 119 (178)
T ss_dssp HHT-SSCEEEETCTS
T ss_pred ccc-ccEecccccce
Confidence 333 34778999954
No 304
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.38 E-value=0.11 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876655
No 305
>PTZ00035 Rad51 protein; Provisional
Probab=95.36 E-value=0.15 Score=55.17 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES----PTNFDCVIWVVVSKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (904)
.-.++.|+|.+|+|||||+..++-.. .. ...-..++||+....++++++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45789999999999999999887654 21 112246779998888887774 444555544
No 306
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.35 E-value=0.036 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....++|||++|.|||.+|+.+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999987
No 307
>PRK14974 cell division protein FtsY; Provisional
Probab=95.35 E-value=0.12 Score=55.63 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC--HHHHHHHHHHHhCCCCCC-CCCCCHHHHH-HH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR--LEKIQDDIGKKIGLSDDS-WKNKSFEEKA-VD 253 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 253 (904)
+..+|.++|++|+||||++..++... . ...+ .++.+. ...+. ..+-++.....++.+... ....+..... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999999888776 2 2233 233343 22232 233455566666654211 1223333332 22
Q ss_pred HHHHHcCCcEEEEecccc
Q 037222 254 ILRSLGEKRFVLLLDDLW 271 (904)
Q Consensus 254 l~~~l~~~r~LlVlDdv~ 271 (904)
+...-....=++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222222388888874
No 308
>PRK08233 hypothetical protein; Provisional
Probab=95.34 E-value=0.015 Score=57.33 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|.+|+||||||+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 309
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.32 E-value=0.047 Score=53.60 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE---ecCCCCHHHHH------HHHHHHhCCCCC---CCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV---VSKDLRLEKIQ------DDIGKKIGLSDD---SWKNK 245 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~------~~i~~~l~~~~~---~~~~~ 245 (904)
+-.+++|+|..|+|||||++.++... ......+++. +. ..+..... .++++.++.... ....-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45689999999999999999999865 2233444442 22 11222221 124555554321 11112
Q ss_pred C-HHHHHHHHHHHHcCCcEEEEecccccccc---cccccCCCCCCCCC-CcEEEEEecchhhh
Q 037222 246 S-FEEKAVDILRSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNT-TSKVVFATRFIDVC 303 (904)
Q Consensus 246 ~-~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~-gs~IivTtR~~~v~ 303 (904)
+ -+...-.+...+...+-++++|+.-..-+ .+.+...+...... |..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 22233345566677888899999854322 22232222201122 56788888876543
No 310
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.31 E-value=0.038 Score=60.16 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEE--------------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.++.++.+.-.+... ..+.|.++|++|+||||+|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899998888887665531 23678899999999999999999886
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.31 E-value=0.066 Score=51.69 Aligned_cols=116 Identities=15% Similarity=0.136 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCC--CC---EEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTN--FD---CVIWVVVSKDLR--LEKIQDDIGKKIGLSDDSWKNKSFEEK 250 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 250 (904)
.-.+++|+|..|.|||||++.+........+. ++ .+.+ +.+... ...+.+.+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 45689999999999999999998875111111 11 1222 233321 11222332210 110 11222333
Q ss_pred HHHHHHHHcCCcEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhhh
Q 037222 251 AVDILRSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 251 ~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
.-.+.+.+..++=++++|+--..-+ ...+...+. .. +..||++|.+....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHH
Confidence 3345556666777888998754322 222323332 11 35678888776654
No 312
>PRK04328 hypothetical protein; Provisional
Probab=95.29 E-value=0.066 Score=55.49 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.-+++.|.|.+|+|||+||.++.... .+.-...+|++..+. +.++.+ .+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcC
Confidence 45789999999999999999876654 123456788887664 444433 334443
No 313
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.27 E-value=0.042 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999999875
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.26 E-value=0.041 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|..|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45699999999999999999998865
No 315
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.25 Score=55.39 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=88.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
...-|.+||++|.|||-||++|++.. +..| ++|-.. +++..- -..++......+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 34567899999999999999999986 4455 333322 222111 111222222222222
Q ss_pred HcCCcEEEEecccccc-------ccc------ccccCCCCC-CCCCCcEEEEEecchhhhcc--cc---CCceeecccCC
Q 037222 258 LGEKRFVLLLDDLWER-------VDL------TKVGVPLPG-PQNTTSKVVFATRFIDVCGS--ME---ADRKFLVACLS 318 (904)
Q Consensus 258 l~~~r~LlVlDdv~~~-------~~~------~~~~~~l~~-~~~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~ 318 (904)
=..-+++|.+|.++.- ..| .++..-+.+ ....|.-||-+|..+++... .. -.....++.=+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 2457999999999641 111 222222321 23456667777766666321 11 23566778888
Q ss_pred HHHHHHHHHHhhCc--cccCCCccHHHHHHHHHHHhCCch
Q 037222 319 EKDAWELFREKVGE--ETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 319 ~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
.+|-.++++..... .....+-+++++|+. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 89999999888863 223344556666643 3565653
No 316
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.23 E-value=0.016 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999876
No 317
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0091 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=6.8
Q ss_pred CcEeecccCcccccchh
Q 037222 591 LELFDISRTEIQELPEE 607 (904)
Q Consensus 591 L~~L~l~~~~i~~Lp~~ 607 (904)
|++|++++|.++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 33444444444444433
No 318
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.17 E-value=0.093 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 319
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.17 E-value=0.029 Score=62.35 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++||++.++.+...+..+ .-|.+.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 45799999999998888754 456789999999999999999876
No 320
>PTZ00301 uridine kinase; Provisional
Probab=95.16 E-value=0.018 Score=57.58 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998775
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.15 E-value=0.059 Score=50.60 Aligned_cols=103 Identities=23% Similarity=0.255 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
.-.+++|+|..|.|||||++.+.... . .....+|+.-. ..++.-. +-...+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 44689999999999999999998875 2 22334443210 0000000 011122233345556
Q ss_pred HcCCcEEEEeccccccc---ccccccCCCCCCCCCCcEEEEEecchhhh
Q 037222 258 LGEKRFVLLLDDLWERV---DLTKVGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 258 l~~~r~LlVlDdv~~~~---~~~~~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
+..++-++++|+.-..- ....+...+. .. +..||++|.+.+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHH
Confidence 66677788999985432 2233333332 11 24678888766544
No 322
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.15 E-value=0.84 Score=46.33 Aligned_cols=208 Identities=12% Similarity=0.153 Sum_probs=113.7
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhccc---CCCCCCEEEEEEecCC----------C----
Q 037222 160 VVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKD----------L---- 222 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~----------~---- 222 (904)
+.++++....+......+..+-..++|+.|.||-|.+..+.+.... .+-.-+..-|.+.|.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5677777777777766667888999999999999988777666421 1223345555544332 1
Q ss_pred -------CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcE-EEEeccccc--ccccccccCCCCCCCCCCcE
Q 037222 223 -------RLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRF-VLLLDDLWE--RVDLTKVGVPLPGPQNTTSK 292 (904)
Q Consensus 223 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~ 292 (904)
.-.-+.++|+++.+.... . +.-..+.| ++|+-.+++ .+.-..++.... .-.+.+|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNCR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCce
Confidence 112334444444332110 0 00012344 444444432 111222222221 1123355
Q ss_pred EEEEecch-hh-hccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcC-
Q 037222 293 VVFATRFI-DV-CGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACK- 369 (904)
Q Consensus 293 IivTtR~~-~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~- 369 (904)
+|+.-.+. .+ ...-...-.+.+..-+++|....+++.+.......+ ++++.+|+++++|.---+..+-..++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 55432211 11 111123346788999999999999998866553333 6789999999998753333332222211
Q ss_pred ---------CCHHHHHHHHHHHhhc
Q 037222 370 ---------RTAEEWIHAVEVLRRS 385 (904)
Q Consensus 370 ---------~~~~~w~~~~~~l~~~ 385 (904)
-..-+|+-+...+...
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHH
Confidence 1346899888776655
No 323
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.085 Score=54.78 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH-hCCCCCCCCCCCHH---HHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK-IGLSDDSWKNKSFE---EKAVD 253 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~---~~~~~ 253 (904)
.-+++=|+|+.|+||||+|.+++-.. +..-...+||+.-..++++.+.. |... +..-. -....+.+ +.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhccee-EecCCCHHHHHHHHHH
Confidence 35678899999999999999987776 34444889999999999877644 3333 21000 00122222 23344
Q ss_pred HHHHHcCCcEEEEeccc
Q 037222 254 ILRSLGEKRFVLLLDDL 270 (904)
Q Consensus 254 l~~~l~~~r~LlVlDdv 270 (904)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444445678899987
No 324
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.13 E-value=0.038 Score=49.39 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHHhc-------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|..-..+.+++.+.+ ++.-|++.+|..|+|||.+++.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567877777777776653 356799999999999999999988884
No 325
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.057 Score=52.44 Aligned_cols=126 Identities=22% Similarity=0.272 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC--CCCHHHHHHHHHHHhCCC-CC-C-CCC------CC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK--DLRLEKIQDDIGKKIGLS-DD-S-WKN------KS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~-~~-~-~~~------~~ 246 (904)
.-.+++|+|..|.|||||++.++.-. . .....+++.-.. ....... .+.++.- .+ . +.. -+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~-~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY-D---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC-C---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 45689999999999999999999875 2 223333332110 0011111 1111100 00 0 000 11
Q ss_pred -HHHHHHHHHHHHcCCcEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhhhccccCCceeec
Q 037222 247 -FEEKAVDILRSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDVCGSMEADRKFLV 314 (904)
Q Consensus 247 -~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 314 (904)
.+...-.+...+..++-++++|+.-..-+ ...+...+. ....+..||++|.+.+.... ..+.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11122235555666778999999864322 222222222 11224678888887766543 3344443
No 326
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.097 Score=56.58 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR--LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (904)
+.++|+++|++|+||||++..++... . ...+ .+..++.. ++. ..+-+....+.++.+.. ...+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHH
Confidence 34799999999999999999998876 2 2222 33444432 222 22223334444444321 1234555555444
Q ss_pred HHHcC-CcEEEEecccc
Q 037222 256 RSLGE-KRFVLLLDDLW 271 (904)
Q Consensus 256 ~~l~~-~r~LlVlDdv~ 271 (904)
..-.. +.=+|++|-.-
T Consensus 314 ~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 314 YFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHhccCCCEEEEeCcc
Confidence 43221 23466677663
No 327
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.09 E-value=0.028 Score=54.11 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=61.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC--CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK--DLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (904)
.-.+++|.|..|.|||||++.++... ......+++.-.. ..+..+.. .+.++.-. +-...+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE---ecCHHHHHHHHHH
Confidence 44689999999999999999998875 2334445543211 11111111 11111100 1112223333455
Q ss_pred HHHcCCcEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhh
Q 037222 256 RSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDV 302 (904)
Q Consensus 256 ~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v 302 (904)
..+-.++-++++|+.-..-+ ...+...+......|..||++|.+...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 56666778888999854322 222222221011236678888887654
No 328
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.19 Score=50.04 Aligned_cols=186 Identities=18% Similarity=0.204 Sum_probs=97.5
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
+++=|.+..++++++.+.- ...+-+..+|++|.|||-+|++.+..- ...|-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL------------- 234 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL------------- 234 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH-------------
Confidence 4567899999999998741 245668899999999999999987764 22331
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEecccccc----cc------------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG-EKRFVLLLDDLWER----VD------------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~----~~------------~~~~~~~l~~-~ 286 (904)
++..-=+-|+.. .+...+++.-...-+ ..+.+|.+|.++.. .+ .-++...+.+ .
T Consensus 235 -KLAgPQLVQMfI-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 235 -KLAGPQLVQMFI-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred -HhcchHHHhhhh-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 111000111111 122333333333333 45888889988531 00 1112222321 2
Q ss_pred CCCCcEEEEEecchhhhcc--c---cCCceeecccCCHHHHHH-HHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHH
Q 037222 287 QNTTSKVVFATRFIDVCGS--M---EADRKFLVACLSEKDAWE-LFREKVGEETLQSHHDIVELAQIVAKECGGLPLALI 360 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~-Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 360 (904)
.....+||.+|..-++..- + .-...++.. ++.+++.. ++.-+........+-+++++++.--.--|.--.|+-
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP-~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFP-HPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCC-CCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 2345678887776555321 1 123445554 44445444 444455444445556677776544333333334444
Q ss_pred HHHHHHhc
Q 037222 361 TIGRAMAC 368 (904)
Q Consensus 361 ~~~~~l~~ 368 (904)
+-|++++-
T Consensus 386 VEAGMiAL 393 (424)
T KOG0652|consen 386 VEAGMIAL 393 (424)
T ss_pred hhhhHHHH
Confidence 55555443
No 329
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.074 Score=54.75 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccC--CCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLES--PTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
-++|.++|++|.|||+|+++++++. .+ .+.+....-+.++ -..++..-..+ ...-...+..++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4788999999999999999999997 33 2233333333322 22222222211 22344556667777
Q ss_pred HHcCCc--EEEEeccccc
Q 037222 257 SLGEKR--FVLLLDDLWE 272 (904)
Q Consensus 257 ~l~~~r--~LlVlDdv~~ 272 (904)
.+.++. +.+.+|.|.+
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 776554 4455788864
No 330
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.019 Score=55.77 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 331
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.02 E-value=0.022 Score=57.56 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 332
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.01 E-value=1.7 Score=46.29 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.......++.++.. .+.|.|.|.+|+||||+|+.++...
T Consensus 50 ~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 50 DKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 33445567777754 3468899999999999999999987
No 333
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.00 E-value=0.16 Score=52.13 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 221 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 221 (904)
.-.++.|.|.+|+||||+|.++..... ..-...+|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457899999999999999998766541 22346788876443
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.97 E-value=0.13 Score=53.90 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH--HHHHHHHHHHhCCCCC-CCCCCCHHHH-HHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKIQDDIGKKIGLSDD-SWKNKSFEEK-AVD 253 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 253 (904)
+.+++.++|++|+||||++..++... .. .. ..+.+++.. .+.. .+-+....+..+.+.- .....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~~-~g-~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-KK-QG-KSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-Hh-cC-CEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999998876 22 22 345555543 2322 2333334444443210 0012233332 233
Q ss_pred HHHHHcCCcEEEEecccc
Q 037222 254 ILRSLGEKRFVLLLDDLW 271 (904)
Q Consensus 254 l~~~l~~~r~LlVlDdv~ 271 (904)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 433333444567777763
No 335
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.92 E-value=0.16 Score=52.85 Aligned_cols=127 Identities=14% Similarity=0.088 Sum_probs=67.1
Q ss_pred HHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC-CCCCC---
Q 037222 167 LEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG-LSDDS--- 241 (904)
Q Consensus 167 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~--- 241 (904)
.+.++..+.+ +...-++|+|+.|+|||||++.+.... . .....+++.-. .....+-..++..... .+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~-~---~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL-S---TGISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc-C---CCCceEEECCE-EeecchhHHHHHHHhcccccccccc
Confidence 3444444443 345789999999999999999999876 2 22233333210 0000011123332221 11100
Q ss_pred -CCCCCHHHHHHHHHHHHc-CCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhh
Q 037222 242 -WKNKSFEEKAVDILRSLG-EKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDV 302 (904)
Q Consensus 242 -~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v 302 (904)
.+..+.......+...+. -.+-++++|.+-....+..+...+. .|..||+||-...+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~----~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH----AGVSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh----CCCEEEEEechhHH
Confidence 011111111223344443 5788999999876655555544432 46789999987655
No 336
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.92 E-value=0.091 Score=54.18 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhccc--CCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLE--SPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDD-----SWKNKSFEE 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~ 249 (904)
.-..++|.|..|+|||||+..+.+.. . .+.+-+.++++-+.+.. ...++..++.+.-.+... ..+.....+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 44678999999999999999988775 2 12335788999888765 466677766654222110 111111111
Q ss_pred -----HHHHHHHHH--c-CCcEEEEecccc
Q 037222 250 -----KAVDILRSL--G-EKRFVLLLDDLW 271 (904)
Q Consensus 250 -----~~~~l~~~l--~-~~r~LlVlDdv~ 271 (904)
..-.+.+++ + ++..|+++||+-
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 123455555 3 789999999984
No 337
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.0044 Score=59.34 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=41.4
Q ss_pred hhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCc--CcccccCCCccEEeEecCcc
Q 037222 723 AFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD--VTFLVFAPNLKSLELLQCDA 797 (904)
Q Consensus 723 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~ 797 (904)
.+..++.++.|.+.+|..+.+..++.++ ...++|+.|+|++|+.+++ +.++..+++|+.|.|.+-+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 4556667777777777666655455444 2466777777777766654 34566666666666655433
No 338
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.039 Score=50.09 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL 258 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (904)
.+-|.|.|.+|+||||+|..++... . .-|+++|.-..-..+...-=+.. ...--+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y-----~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEY-----KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccc-----cCccccHHHHHHHHHHHH
Confidence 4568899999999999999999765 2 34676664322222211111110 112346667777777766
Q ss_pred cCCcE
Q 037222 259 GEKRF 263 (904)
Q Consensus 259 ~~~r~ 263 (904)
.+..+
T Consensus 74 ~~Gg~ 78 (176)
T KOG3347|consen 74 IEGGN 78 (176)
T ss_pred hcCCc
Confidence 55443
No 339
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.1 Score=55.89 Aligned_cols=84 Identities=21% Similarity=0.374 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
.-++|.|-|-+|+|||||.-+++.+.. .+. .++||+--+. ..++ +--++.++.+.+.. ...+.+...+.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA-~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA-KRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH-hcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHH
Confidence 347899999999999999999999982 222 6788765543 3322 22345565443221 222333333333
Q ss_pred HHHHcCCcEEEEecccc
Q 037222 255 LRSLGEKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~~~r~LlVlDdv~ 271 (904)
. +.++-++|+|-+.
T Consensus 165 ~---~~~p~lvVIDSIQ 178 (456)
T COG1066 165 E---QEKPDLVVIDSIQ 178 (456)
T ss_pred H---hcCCCEEEEeccc
Confidence 2 3678899999984
No 340
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.90 E-value=0.022 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 341
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.89 E-value=0.023 Score=57.68 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999886
No 342
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.094 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 343
>PRK03839 putative kinase; Provisional
Probab=94.85 E-value=0.022 Score=55.91 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 344
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.44 Score=48.59 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=93.2
Q ss_pred ccccchHHHHHHHHHHHh----------c--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV----------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
+++.|.+..++.+.+... . ...+-|.++|++|.||+-||++|+... .. -|.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----
Confidence 356788888888877643 1 135779999999999999999999876 12 23344432
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc------cc---ccc----ccCCCC--CCCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER------VD---LTK----VGVPLP--GPQNT 289 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~------~~---~~~----~~~~l~--~~~~~ 289 (904)
++.. +.++ ..+.++..|.+.- ++++-+|.+|.++.. .+ -.. +..... +....
T Consensus 201 DLvS---KWmG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 201 DLVS---KWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred HHHH---HHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 1111 1111 2244555555544 468899999999641 11 111 111122 13445
Q ss_pred CcEEEEEecchhhhcccc---CCceeecccCCHHHHHH-HHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 290 TSKVVFATRFIDVCGSME---ADRKFLVACLSEKDAWE-LFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 290 gs~IivTtR~~~v~~~~~---~~~~~~l~~L~~~e~~~-Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
|.-|+-+|..+=+....- -...|.+ ||++..|.. +|+-+.+... +.-.+..-+++.++..|.
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGY 334 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCC
Confidence 666666777654433211 1123333 456666654 4555555432 111223345666676664
No 345
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.038 Score=53.83 Aligned_cols=120 Identities=19% Similarity=0.245 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCC-CC--CCCCC--------CC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGL-SD--DSWKN--------KS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~--~~~~~--------~~ 246 (904)
.-.+++|+|..|.|||||++.++... . .....+++.-....+.. ..+.+.++. .. .-+.. -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL-K---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-C---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 44689999999999999999998865 1 22344444211000000 111111110 00 00011 11
Q ss_pred H-HHHHHHHHHHHcCCcEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhhhc
Q 037222 247 F-EEKAVDILRSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDVCG 304 (904)
Q Consensus 247 ~-~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v~~ 304 (904)
. +...-.+...+..++=++++|+.-..-| ...+...+......|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1 2222345666677888999999864322 22222222101123667888888766544
No 346
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.83 E-value=0.025 Score=57.00 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 347
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.079 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-..+.|.|+.|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999874
No 348
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.80 E-value=0.1 Score=51.80 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC--------CEEEEEEecCC
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNF--------DCVIWVVVSKD 221 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--------~~~~wv~vs~~ 221 (904)
-.++.|.|++|+||||++..+..... ....| ..++|+....+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~-~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA-TGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH-T---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-hCCccCCcccccCceEEEEeccCC
Confidence 35788999999999999999988873 22222 36778776555
No 349
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.39 Score=55.63 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=84.6
Q ss_pred cccchHHHHHHHHHHHh---c----------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 159 TVVGLQSQLEQVWRCLV---E----------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---~----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+.|.+..++.+.+.+. . ...+.+-++|++|.|||.||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 44566655555544432 1 245688999999999999999999965 334432221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccc-------------cccccCCCCC-CCCCCc
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVD-------------LTKVGVPLPG-PQNTTS 291 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~gs 291 (904)
++ +.. +-..+.......+....+..+.+|.+|+++.-.. ...+...+.+ ....+.
T Consensus 311 ~l----~sk-------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 EL----LSK-------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred HH----hcc-------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 11 100 1112223333333334457899999999964211 1112222210 122333
Q ss_pred EEEEEecchhhhcc-c----cCCceeecccCCHHHHHHHHHHhhCcc
Q 037222 292 KVVFATRFIDVCGS-M----EADRKFLVACLSEKDAWELFREKVGEE 333 (904)
Q Consensus 292 ~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 333 (904)
.||-||-....... + .-...+.+.+-+.++..+.|..+....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 45555554443221 1 124578889999999999999988643
No 350
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.80 E-value=0.07 Score=58.22 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=38.1
Q ss_pred ccccchHHHHHHHHHHHhc---------C-----CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------E-----SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+..++.. . ..+.|.++|++|+||||+|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999988877743 0 13678999999999999999999886
No 351
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.75 E-value=0.082 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 352
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.74 E-value=0.078 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 353
>PRK05439 pantothenate kinase; Provisional
Probab=94.74 E-value=0.23 Score=52.66 Aligned_cols=83 Identities=14% Similarity=0.034 Sum_probs=44.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
+..-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-+.....+.. ..+....+-...-+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 356789999999999999999998865 21111122334443333323322221 111100111133456666666666
Q ss_pred HHcCCc
Q 037222 257 SLGEKR 262 (904)
Q Consensus 257 ~l~~~r 262 (904)
...|+.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 656654
No 354
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.31 Score=51.70 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=32.7
Q ss_pred cccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++.|.++.++-|.+++.- ..-+-|..+|++|.|||-||++|+..-
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 345666666555555431 134668899999999999999999986
No 355
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.049 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 356
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.69 E-value=0.04 Score=61.82 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=54.0
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEE-EEEecCCCCHHHHHHHHHHHhCCC--CCCCCC
Q 037222 169 QVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVI-WVVVSKDLRLEKIQDDIGKKIGLS--DDSWKN 244 (904)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~~~~~~~~~i~~~l~~~--~~~~~~ 244 (904)
++++++.. +.-....|+|++|+|||||++.+++... ..+-++.+ ++-|.+... ++ .+|-+.+... ...++.
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpe--EV-tdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPE--EV-TDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchh--hH-HHHHHhccceEEEECCCC
Confidence 34555543 3446788999999999999999998762 23445443 444555432 11 2233333100 001111
Q ss_pred CCH-----HHHHHHHHHHH--cCCcEEEEecccc
Q 037222 245 KSF-----EEKAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 245 ~~~-----~~~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
... ..+.-.+.+++ .++.+||++|++-
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111 11222334444 6899999999983
No 357
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.68 E-value=0.88 Score=48.74 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=34.4
Q ss_pred eeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 311 KFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 311 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
.+++++++.+|+..++.-.....-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998887754432222333455667777778988543
No 358
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.68 E-value=0.033 Score=49.91 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCCE
Q 037222 182 IGLYGMGGVGKTTLLTHINNKFLESPTNFDC 212 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 212 (904)
|.++|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 5789999999999999999987 566643
No 359
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.15 Score=55.92 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCC-CCCCEEEEEEecCCCCH--HHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKDLRL--EKIQDDIGKKIGLSDDSWKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 254 (904)
..++|.++|+.|+||||.+..++....... ..-..+..|++. ++.. ..-++..++.++.+.. ...+.......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHH
Confidence 357999999999999999999988762111 122345555544 3332 2335566666665431 223444444444
Q ss_pred HHHHcCCcEEEEecccc
Q 037222 255 LRSLGEKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~~~r~LlVlDdv~ 271 (904)
.. + .+.=++++|..-
T Consensus 250 ~~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 250 TQ-S-KDFDLVLVDTIG 264 (388)
T ss_pred HH-h-CCCCEEEEcCCC
Confidence 33 3 345578888874
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.67 E-value=0.12 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.++|..|+||||+|.+++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998766
No 361
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.66 E-value=0.074 Score=49.59 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHH
Q 037222 182 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQD 229 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 229 (904)
|.++|++|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 5789999999999999999886 1 1344567777777777654
No 362
>PRK08149 ATP synthase SpaL; Validated
Probab=94.66 E-value=0.13 Score=56.90 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSD-----DSWKNKSFE--- 248 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 248 (904)
+-..++|+|..|+|||||+..++... ..+.+++..+... .++.++..+......... ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45688999999999999999988754 2344444445443 356666666665433211 011111111
Q ss_pred --HHHHHHHHHH--cCCcEEEEecccc
Q 037222 249 --EKAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 249 --~~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
.....+.+++ +++.+|+++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 1223344444 6899999999994
No 363
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.65 E-value=0.065 Score=59.08 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDD-----SWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 249 (904)
.-..++|+|..|+|||||++.++... ..+.++++-+.+.. .+.++..+++..-++... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45678999999999999999998654 23566667777654 345566665444222110 001111111
Q ss_pred ---HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 122344555 6899999999994
No 364
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.64 E-value=0.034 Score=55.62 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE-------ecCCCCHHHH--HHHHHHHhCCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-------VSKDLRLEKI--QDDIGKKIGLSDD 240 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------vs~~~~~~~~--~~~i~~~l~~~~~ 240 (904)
....|.|+||+|+||||..+.++.+. ..++....++-.. ..-+.|+++. .++.+++.++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 45678899999999999999999887 3333333333322 1222345544 4677887766543
No 365
>PRK00625 shikimate kinase; Provisional
Probab=94.61 E-value=0.027 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 366
>PRK06217 hypothetical protein; Validated
Probab=94.61 E-value=0.054 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 367
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.61 E-value=0.1 Score=51.56 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=30.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH
Q 037222 182 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 230 (904)
+.|.|.+|+|||+||.++..... +.=..++|++..++ ..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 67899999999999999877652 22245778876543 4454444
No 368
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.60 E-value=1.2 Score=47.13 Aligned_cols=167 Identities=13% Similarity=0.033 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcc-------cCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHhCC
Q 037222 167 LEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFL-------ESPTNFDCVIWVVV-SKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 167 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~-------~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 237 (904)
++.+...+..+. .++..++|..|.||+++|..+.+... ....+-+...++.. .....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555555544 45666999999999999999987751 11122222333321 1112222322 23333221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--ccccccCCCCCCCCCCcEEEEEecc-hhhhc-cccCCceee
Q 037222 238 SDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--DLTKVGVPLPGPQNTTSKVVFATRF-IDVCG-SMEADRKFL 313 (904)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IivTtR~-~~v~~-~~~~~~~~~ 313 (904)
.. .-.+.+=++|+|++.... ....+...+. ....++.+|++|.+ ..+.. .......++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 11 002467788899986542 3444544554 34456677765543 34432 234567899
Q ss_pred cccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 314 VACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 314 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
+.+++.++....+.+. +.. ++.++.++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~~~--------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-NKE--------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-CCC--------hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998877654 211 23466667777763345444
No 369
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.60 E-value=0.036 Score=54.77 Aligned_cols=129 Identities=14% Similarity=0.109 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC----C--CCHHH-------HH
Q 037222 162 GLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK----D--LRLEK-------IQ 228 (904)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~----~--~~~~~-------~~ 228 (904)
.+..+....++.|. ...++.+.|++|.|||.||.+.+-+. -..+.|+.++++.-.- . |-+-+ .+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 45566677777777 56799999999999999999888765 3458889888875211 1 10111 11
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHH------HHHHHcCC---cEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe
Q 037222 229 DDIGKKIGLSDDSWKNKSFEEKAVD------ILRSLGEK---RFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT 297 (904)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt 297 (904)
..+...+..-. .....+.+... -..+++|+ ..+||+|++.+. .++..+... .+.|||||++-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR----~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR----IGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT----B-TT-EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc----cCCCcEEEEec
Confidence 11122221100 11122222210 01234454 468999999653 456665443 45789999987
Q ss_pred cch
Q 037222 298 RFI 300 (904)
Q Consensus 298 R~~ 300 (904)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 643
No 370
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.59 E-value=0.064 Score=48.97 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+|.+.|.-|+||||+++.++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999986
No 371
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=1.4 Score=48.29 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH--
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-- 258 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-- 258 (904)
--.++|++|.||||++.++++.. .||..- +.++... +..+ |+..|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~-----------------------~n~d----Lr~LL~~ 283 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVK-----------------------LDSD----LRHLLLA 283 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeecccc-----------------------CcHH----HHHHHHh
Confidence 34689999999999999999987 454321 1111111 1111 22223
Q ss_pred cCCcEEEEecccccccc-----------c---------ccccCCCCC-CCCC-CcEEE-EEecchhhh--cccc---CCc
Q 037222 259 GEKRFVLLLDDLWERVD-----------L---------TKVGVPLPG-PQNT-TSKVV-FATRFIDVC--GSME---ADR 310 (904)
Q Consensus 259 ~~~r~LlVlDdv~~~~~-----------~---------~~~~~~l~~-~~~~-gs~Ii-vTtR~~~v~--~~~~---~~~ 310 (904)
...+-+||+.|++-..+ . .-+...+.+ +... +-||| .||...+-. +.+. ...
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 24567788888863211 1 112222211 1111 24565 466654432 1122 234
Q ss_pred eeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhc
Q 037222 311 KFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMAC 368 (904)
Q Consensus 311 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 368 (904)
.+++.--+.+....||.+..+... . ..+..+|.+.-.|.-+.=..++..|-.
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 678999999999999999887642 1 234555666666665555555555433
No 372
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.55 E-value=0.11 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 373
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.55 E-value=0.17 Score=51.66 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI 231 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 231 (904)
.-.++.|.|.+|+||||+|.++.... . +.. ...+|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34689999999999999987665544 1 122 3456776433 456666665
No 374
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.52 E-value=0.11 Score=57.58 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC----CCCCCCCHHH----
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSD----DSWKNKSFEE---- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~---- 249 (904)
.-..++|+|..|+|||||++.+.... .....+++..--+..++.++....+....... .+.+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 44679999999999999999887654 12223444432233455554444433321000 0001111111
Q ss_pred -HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 -KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 -~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchH
Confidence 122344444 5899999999984
No 375
>PRK05973 replicative DNA helicase; Provisional
Probab=94.50 E-value=0.2 Score=50.91 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++..++ ..++...+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a--~~Ge~vlyfSlEes--~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-M--KSGRTGVFFTLEYT--EQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEEeCC--HHHHHHHHH
Confidence 44688899999999999999987765 1 22345677766554 455555543
No 376
>PRK04040 adenylate kinase; Provisional
Probab=94.49 E-value=0.032 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999886
No 377
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.48 E-value=0.026 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 378
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.47 E-value=0.13 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 379
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.44 E-value=0.2 Score=55.87 Aligned_cols=92 Identities=17% Similarity=0.315 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
.-..++|.|..|+|||||+.++.... .. .+-+.++++-+.+.. .+.++.+++...-.... ...+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999987776 21 223567888787664 45666666665422211 0111111221
Q ss_pred ---HHHHHHHHH---cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL---GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l---~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 223455666 6799999999993
No 380
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.43 E-value=0.13 Score=57.07 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
.-..++|+|..|+|||||++.++... ..+.++++-+.+.. .+.++..+.+..-+... ...+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45788999999999999999999765 23556667676654 34455554544322211 0011111111
Q ss_pred ---HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 122344555 6899999999993
No 381
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.43 E-value=0.027 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 382
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.41 E-value=0.048 Score=50.72 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
++|.|+|..|+|||||++.+.+.. . +..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 489999999999999999999998 2 34555555655544
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.40 E-value=0.085 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 384
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.39 E-value=0.081 Score=61.87 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=56.1
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+++..+|..- ...+...+++.++.+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 46789998888888777654 468899999999999999999876 2345677788654 33466777777776654
No 385
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.39 E-value=0.11 Score=58.53 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
.-.++.|.|.+|+|||||+.+++... . ..-..++|++..+. ..++... ++.++...+.. ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~-a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL-A--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 35689999999999999999998876 2 22245788876543 3333322 44454322111 112333333332
Q ss_pred HHHHcCCcEEEEeccc
Q 037222 255 LRSLGEKRFVLLLDDL 270 (904)
Q Consensus 255 ~~~l~~~r~LlVlDdv 270 (904)
. +.+.-++|+|.+
T Consensus 153 ~---~~~~~lVVIDSI 165 (446)
T PRK11823 153 E---EEKPDLVVIDSI 165 (446)
T ss_pred H---hhCCCEEEEech
Confidence 2 235557888886
No 386
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.37 E-value=0.092 Score=53.71 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=59.9
Q ss_pred ccccchHHHHHHHHHHHhc-------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 230 (904)
..++|..-.++.|+..+.+ .+.-|++.+|..|+||.-+++.+++...+..-+=+ ....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHH
Confidence 4567877777777777764 35679999999999999999999988732211111 1112
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEecccccc
Q 037222 231 IGKKIGLSDDSWKNKSFEEKAVDILRSLG-EKRFVLLLDDLWER 273 (904)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~ 273 (904)
.......+..+....-.+++...++..++ -+|-|+|+|+++..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22222222111011112334444444443 47999999999764
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.023 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 457889999999999999998877
No 388
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.32 E-value=0.02 Score=34.06 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=17.0
Q ss_pred cccEEEeecCCCcccccCcccccc
Q 037222 565 SLKVLKISNCGNFTFQLPLGMSKL 588 (904)
Q Consensus 565 ~Lr~L~l~~~~~i~~~lp~~i~~L 588 (904)
+|++||+++| .++ .+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EES-EEGTTTTT-
T ss_pred CccEEECCCC-cCE-eCChhhcCC
Confidence 4788899988 888 888776653
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.052 Score=51.87 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=61.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDIL 255 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (904)
+-.+++|+|..|.|||||++.+.... ......+++.-.... .... ....++.-. +-..-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHH
Confidence 34689999999999999999998875 233455554322111 1111 111121110 0111223333455
Q ss_pred HHHcCCcEEEEecccccccc---cccccCCCCCCCCCCcEEEEEecchhhhc
Q 037222 256 RSLGEKRFVLLLDDLWERVD---LTKVGVPLPGPQNTTSKVVFATRFIDVCG 304 (904)
Q Consensus 256 ~~l~~~r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IivTtR~~~v~~ 304 (904)
..+...+-++++|+.-...+ ...+...+......+..|+++|.......
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56666778899999864322 22222222101112467888887765544
No 390
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.31 E-value=0.21 Score=55.83 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE- 249 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 249 (904)
..-..++|.|.+|+|||||+.++.... . +.+-+.++++-+.+.. .+.++..++...-.+.. ...+......
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 345678999999999999999998887 2 2366888888887654 45566666654322111 0101111111
Q ss_pred ----HHHHHHHHH--c-CCcEEEEecccc
Q 037222 250 ----KAVDILRSL--G-EKRFVLLLDDLW 271 (904)
Q Consensus 250 ----~~~~l~~~l--~-~~r~LlVlDdv~ 271 (904)
..-.+.+++ + ++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 223455565 3 899999999993
No 391
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.30 E-value=0.12 Score=57.71 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
.+++.++|++|+||||++..++... .....-..+..|+..... ...+-+....+.++.+.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3689999999999999999988776 201222345666543211 112223333444444331 12233444444433
Q ss_pred HcCCcEEEEeccc
Q 037222 258 LGEKRFVLLLDDL 270 (904)
Q Consensus 258 l~~~r~LlVlDdv 270 (904)
+. ..=+|++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3456778866
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.30 E-value=0.1 Score=54.52 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 037222 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDD 240 (904)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (904)
.|...+..+.+..+......+|.|.|..|+||||++..+.... . ..-..++.+.-...+.... + .++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i-~--~~~~~iitiEdp~E~~~~~----~-~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL-N--TPEKNIITVEDPVEYQIPG----I-NQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh-C--CCCCeEEEECCCceecCCC----c-eEEEeC--
Confidence 4544444444444444556789999999999999999887765 1 1111223321111111100 0 111111
Q ss_pred CCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccc
Q 037222 241 SWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLT 277 (904)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~ 277 (904)
..........+...++..+=.|+++++.+.+...
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111234556677778888899999998776543
No 393
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.28 E-value=0.031 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 394
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.26 E-value=0.14 Score=56.63 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHHh-------c---C--------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 157 ERTVVGLQSQLEQVWRCLV-------E---E--------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+..++|.+..++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 3568999998888866551 1 0 12578999999999999999999765
No 395
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.24 E-value=0.045 Score=51.42 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..||.+.|.+|+||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999998
No 396
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.21 E-value=0.14 Score=46.89 Aligned_cols=101 Identities=21% Similarity=0.332 Sum_probs=46.1
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEeecccCcccccchh-hhcCCC
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDISRTEIQELPEE-LKLLVN 613 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~ 613 (904)
..|++|+.+.+. . .+..++...|.+++.|+.+.+.+. +. .++ ..+.++..|+++.+.. .+..++.. +..+++
T Consensus 9 ~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~--~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 9 YNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN--LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST--TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred hCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc--cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 455666666665 2 355666666666666776666553 33 222 2345555666666654 44444443 334666
Q ss_pred CcEeeccccccccccchhhhcCCCCCceeeec
Q 037222 614 LKCLNLRWTSKLIRIPRQLISNSSGLRVLRMF 645 (904)
Q Consensus 614 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 645 (904)
|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 777766532 455665556665 66666654
No 397
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.20 E-value=0.032 Score=55.75 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|+|.|..|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.27 Score=54.46 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSD 239 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 239 (904)
...+++++|..|+||||++..+.... ......+.+.++..... ....+-+....+.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 34799999999999999999888754 21222334444443221 122333445555555543
No 399
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.18 E-value=0.09 Score=53.20 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHH
Q 037222 166 QLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 228 (904)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 228 (904)
+..++++.+.. ++..+|+|.|+||+|||||.-.+...+ ....+=-.++=|.-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCccc
Confidence 44556666554 467899999999999999999998888 333333345555556666544443
No 400
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.17 E-value=0.19 Score=48.03 Aligned_cols=117 Identities=18% Similarity=0.144 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEE--EEEEecCCCCHHHHHHHHHHHhC---CCCC-CCCCCCHH----
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCV--IWVVVSKDLRLEKIQDDIGKKIG---LSDD-SWKNKSFE---- 248 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~--~wv~vs~~~~~~~~~~~i~~~l~---~~~~-~~~~~~~~---- 248 (904)
...|-|++..|.||||.|..++-+.. ...+... -|+.-........++... .+. .... .+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 46788899999999999998887762 3333321 233322222333344332 111 0000 01111111
Q ss_pred ---HHHHHHHHHHcC-CcEEEEecccccc-----cccccccCCCCCCCCCCcEEEEEecch
Q 037222 249 ---EKAVDILRSLGE-KRFVLLLDDLWER-----VDLTKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 249 ---~~~~~l~~~l~~-~r~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
+.....++.+.. +-=++|||.+-.. .+.+.+...+. ....+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 122233444434 4459999999532 33344544444 455677999999975
No 401
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.17 E-value=0.23 Score=56.95 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----
Q 037222 169 QVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS----- 241 (904)
Q Consensus 169 ~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----- 241 (904)
.+-+.|..+ .-+++.|.|.+|+|||||+.++..... +.-..++|++.-++ ..++...+ +.++...+.
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCC
Confidence 344444432 467899999999999999999988762 23356777766553 55555554 444432210
Q ss_pred --------CCCCCHHHHHHHHHHHHcC-CcEEEEeccc
Q 037222 242 --------WKNKSFEEKAVDILRSLGE-KRFVLLLDDL 270 (904)
Q Consensus 242 --------~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv 270 (904)
......+.....+.+.+.. +.-.+|+|.+
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112335556666665533 4456777776
No 402
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.16 E-value=0.082 Score=52.19 Aligned_cols=43 Identities=33% Similarity=0.446 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.|+|+|-||+||||+|..+.... ..++.| .+.-|....+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCc-eEEEEeCCCCCChH
Confidence 68999999999999999966665 222323 34556666665543
No 403
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.15 E-value=0.15 Score=59.84 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=50.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.++.++.+...+.... -+.++|++|+||||+|+.+.+.. . ...|...+++. ....+...+++.++.+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 467899988887777776543 55599999999999999999887 2 23333333332 222345566777777665
No 404
>PF13245 AAA_19: Part of AAA domain
Probab=94.15 E-value=0.1 Score=42.59 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999995554444433
No 405
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.09 E-value=0.24 Score=54.57 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+||||||+.+..-+
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 34689999999999999999987654
No 406
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.07 E-value=0.063 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.|.|.|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 407
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.07 E-value=0.047 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999986
No 408
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.04 E-value=0.064 Score=56.18 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHH
Q 037222 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 227 (904)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 227 (904)
...+++.+...+. -+.++|+.|+|||++++...... . ...| ...-++.|...+...+
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHH
Confidence 3456666665544 45799999999999999988765 2 1222 2344555554334333
No 409
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.04 E-value=0.059 Score=54.23 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.7
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 172 RCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.+.+.++++|+++|+.|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555689999999999999999999998875
No 410
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.98 E-value=0.13 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999886
No 411
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.28 Score=52.91 Aligned_cols=89 Identities=20% Similarity=0.113 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
+.++++++|+.|+||||++..++... ... . ..+.+|+..... ...+-++...+.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999998766 222 2 345666654321 223445555555554321 23455555544443
Q ss_pred HHc-CCcEEEEecccc
Q 037222 257 SLG-EKRFVLLLDDLW 271 (904)
Q Consensus 257 ~l~-~~r~LlVlDdv~ 271 (904)
.-. +..=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 334566777763
No 412
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.95 E-value=0.11 Score=54.43 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.-+++.|.|.+|+|||+++.++.... ......++||+..+. ..++.+.+.+ ++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 56899999999999999999998886 345788999988774 4555554444 44
No 413
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.94 E-value=0.095 Score=53.76 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=44.0
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH
Q 037222 168 EQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 168 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 230 (904)
.+++..+.. ++..+|+|.|.||+||+||.-.+.... ...++--.++=|.-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 345555543 567899999999999999999998887 44455455666667777765555433
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.94 E-value=0.052 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 415
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.93 E-value=0.18 Score=59.78 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-+++-|.|.+|+||||||.+++... . ..-..++||..-+.+++ ..+++++...+. ......+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a-~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA-Q--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45788899999999999998876654 1 22356799988777774 366777664321 1233445555555
Q ss_pred HHHHc-CCcEEEEecccc
Q 037222 255 LRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~ 271 (904)
...++ ++.-+||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 467789999985
No 416
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.92 E-value=0.083 Score=56.94 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+||.+..+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999888777766666677899999999999999998665
No 417
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.92 E-value=1.8 Score=47.19 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC--HHHHHHHHHHHhCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR--LEKIQDDIGKKIGLS 238 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 238 (904)
...||-.+|.-|+||||-|-++++.. +. ....+-+.....+. .-+-++.+.++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-kk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-KK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-HH---cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 46789999999999999999999988 22 22233333333333 334466777777654
No 418
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.91 E-value=0.051 Score=55.61 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCC-CCEEEEEEecCCCCHHHHHHHHHHHhCCCC----------------C
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTN-FDCVIWVVVSKDLRLEKIQDDIGKKIGLSD----------------D 240 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~ 240 (904)
.-+++.|.|.+|+|||+|+.++..... .. =..++||+..++ ..++.+.+- .++... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999998765441 22 345788877654 344444433 333210 0
Q ss_pred CC--CCCCHHHHHHHHHHHHcC-CcEEEEecccc
Q 037222 241 SW--KNKSFEEKAVDILRSLGE-KRFVLLLDDLW 271 (904)
Q Consensus 241 ~~--~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 271 (904)
.. ...+.+.....+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 00 034566777777776643 45788888873
No 419
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.90 E-value=0.29 Score=49.24 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|.|..|+|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998764
No 420
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.90 E-value=0.055 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 421
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.88 E-value=0.089 Score=55.83 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=41.5
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..|+|.++.++++++.+.. ..-+++.++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999974 357899999999999999999999887
No 422
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.85 E-value=0.25 Score=54.66 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCC-----CCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQDDIGKKIGLSDD-----SWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 249 (904)
.-..++|+|..|+|||||++.+.... . .+..+.+.+.+ .-.+.++..+.+..-++... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~-~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT-D----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999888765 1 23333333333 33445555554443222110 011112222
Q ss_pred ---HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++..|+++||+-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122345555 6789999999994
No 423
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.45 Score=54.57 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=88.8
Q ss_pred ccccchHHHHHHH---HHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQV---WRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.++.|.|+.++++ ++.|.+. -.+-+..+|++|.|||.||++++... .+ .| .+.|.+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccch----
Confidence 4567887766554 5555542 14558899999999999999999987 32 22 122221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc------------ccc----ccccCCCCCC-CC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER------------VDL----TKVGVPLPGP-QN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~~----~~~~~~l~~~-~~ 288 (904)
+.++.+ .........+...+..++-++++++|.++.. .++ .++..-..+. .+
T Consensus 218 ----~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ----DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ----hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 111111 0111112223333444566899999998641 112 2232222211 12
Q ss_pred CCcEEEEEecchhhhcc--c--c-CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh
Q 037222 289 TTSKVVFATRFIDVCGS--M--E-ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL 357 (904)
Q Consensus 289 ~gs~IivTtR~~~v~~~--~--~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 357 (904)
.|--|+..|..++|... + + -.+.+.++.-+...-.+.++-++........-++.. |++.+-|.--
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCccc
Confidence 34444445555555321 1 1 234556666565666666766654433222223322 6677766543
No 424
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.85 E-value=0.043 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 425
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.85 E-value=0.4 Score=50.97 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.++++.|+.|+|||||.+.+....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998876
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.83 E-value=0.05 Score=53.36 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 427
>PRK13949 shikimate kinase; Provisional
Probab=93.83 E-value=0.049 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.83 E-value=0.23 Score=55.87 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhCCC
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQDDIGKKIGLS 238 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~ 238 (904)
..|++++|+.|+||||++.+++... .....-..+..|... .+ ...+-++...+.++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999999876 222222234455432 23 2334445555555543
No 429
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.82 E-value=0.051 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 430
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.82 E-value=0.29 Score=54.58 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhcccC-----CCCCCEEEEEEecCCCCHHHHHHHHHHHhC-CCCC-----CCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLL-THINNKFLES-----PTNFDCVIWVVVSKDLRLEKIQDDIGKKIG-LSDD-----SWKNK 245 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~-----~~~~~ 245 (904)
.-..++|.|..|+|||||| -.+.+.. .+ .+.-+..+++.+.+..+.-.-+.+.+++-+ +... ..+..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4467899999999999997 5556653 11 134567889999887643222334444333 1110 00111
Q ss_pred CHHH-----HHHHHHHHH--cCCcEEEEeccccc
Q 037222 246 SFEE-----KAVDILRSL--GEKRFVLLLDDLWE 272 (904)
Q Consensus 246 ~~~~-----~~~~l~~~l--~~~r~LlVlDdv~~ 272 (904)
...+ ..-.+.+++ +++..|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 122344444 68999999999953
No 431
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.82 E-value=0.32 Score=53.95 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
+-..++|.|..|+|||||++.+++.. ..+.++++-+.+.. .+.++....+..-+... ...+......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45688999999999999999999875 23677888787764 34454444333222111 0001111111
Q ss_pred ---HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122344555 6899999999994
No 432
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.81 E-value=0.18 Score=53.59 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDIL 255 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 255 (904)
-+++-|+|+.|+||||||..+.... .+.-...+||..-..+++. .++.++...+.. .....++..+...
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4689999999999999999988776 2234568999987776654 344455443221 2234555556666
Q ss_pred HHHcC-CcEEEEeccccc
Q 037222 256 RSLGE-KRFVLLLDDLWE 272 (904)
Q Consensus 256 ~~l~~-~r~LlVlDdv~~ 272 (904)
..++. .--++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 66654 345888998854
No 433
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.80 E-value=0.22 Score=56.21 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
.-.++.|.|.+|+|||||+.++.... .. .-..++|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~-a~--~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQL-AK--NQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-Hh--cCCcEEEEECcC
Confidence 45789999999999999999998776 21 123577887554
No 434
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.80 E-value=0.3 Score=47.08 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=45.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC-
Q 037222 182 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE- 260 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 260 (904)
+.|.|.+|+|||++|.++.... ....+|+.-.+.++.+ +.+.|.+-.......+. ..+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~---t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWR---TIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCce---EeecHHHHHHHHHhc
Confidence 6789999999999999987542 2357788777777653 44443332221222222 22222333333321
Q ss_pred -CcEEEEeccc
Q 037222 261 -KRFVLLLDDL 270 (904)
Q Consensus 261 -~r~LlVlDdv 270 (904)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2347999998
No 435
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.78 E-value=0.077 Score=57.19 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+||-++.+..+...+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999988888888877777778899999999999999997765
No 436
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.77 E-value=0.045 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998864
No 437
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.047 Score=51.25 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037222 181 IIGLYGMGGVGKTTLLTHIN 200 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~ 200 (904)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 438
>PRK15453 phosphoribulokinase; Provisional
Probab=93.76 E-value=0.44 Score=49.34 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC--CCCHHHHHHHHHH--HhCCCCCC--CCCCCHHHH
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK--DLRLEKIQDDIGK--KIGLSDDS--WKNKSFEEK 250 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~--~l~~~~~~--~~~~~~~~~ 250 (904)
....+|+|.|.+|+||||+|+.+.+.. .. .-...+.++... .++..+.-..+.. .-+.+-+. .+..+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if-~~--~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF-RR--ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-hh--cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 356799999999999999999998766 21 111233443322 1233333332221 12222111 245567777
Q ss_pred HHHHHHHHcC
Q 037222 251 AVDILRSLGE 260 (904)
Q Consensus 251 ~~~l~~~l~~ 260 (904)
.+.++.+.++
T Consensus 80 ~~~l~~l~~~ 89 (290)
T PRK15453 80 EQLFREYGET 89 (290)
T ss_pred HHHHHHHhcC
Confidence 7777776553
No 439
>PRK14530 adenylate kinase; Provisional
Probab=93.72 E-value=0.052 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 440
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.69 E-value=0.16 Score=56.36 Aligned_cols=92 Identities=21% Similarity=0.337 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
.-..++|.|.+|+|||+|+.++.... . +.+-+.++|+-+.+.. ...++.+++...-.+.. ...+.....+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44678999999999999999998876 2 2334788898887765 35566666654322111 0011111111
Q ss_pred ---HHHHHHHHH---cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL---GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l---~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 223455665 4689999999994
No 441
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.68 E-value=0.28 Score=54.42 Aligned_cols=90 Identities=24% Similarity=0.288 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSD-----DSWKNKSFEE- 249 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 249 (904)
..-..++|+|..|+|||||++.+.+.. ..+..+++.+.+. ..+.+.+.+....-.... ...+....+.
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 345688999999999999999988754 3455566666554 334455555432111100 0001111222
Q ss_pred ----HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ----KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ----~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122345555 6889999999994
No 442
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.66 E-value=0.082 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998765
No 443
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.65 E-value=0.11 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+..|+|++|.||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999998777666654
No 444
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.64 E-value=0.23 Score=45.40 Aligned_cols=113 Identities=24% Similarity=0.375 Sum_probs=61.0
Q ss_pred ceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEe
Q 037222 518 NVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELF 594 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L 594 (904)
.++.+.+.. .+..+.. +..+++|+.+.+. . .+..++...|.+++.|+.+.+.+. +. .++ ..+..+.+|+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~-~-~~~~i~~~~F~~~~~l~~i~~~~~--~~-~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFP-N-NLTSIGDNAFSNCKSLESITFPNN--LK-SIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEES-S-TTSCE-TTTTTT-TT-EEEEETST--T--EE-TTTTTT-TTECEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccc-c-cccccceeeeeccccccccccccc--cc-cccccccccccccccc
Confidence 456666653 3444433 4788899999998 3 388889888999999999999754 33 333 345678999999
Q ss_pred ecccCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCc
Q 037222 595 DISRTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLR 640 (904)
Q Consensus 595 ~l~~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 640 (904)
.+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|+
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 99765 6666654 4555 999998875 46778887788877764
No 445
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.64 E-value=0.31 Score=46.98 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 160 VVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 160 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++|.+..+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777888888877754 223456699999999999999999865
No 446
>PRK13947 shikimate kinase; Provisional
Probab=93.62 E-value=0.054 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 447
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.59 E-value=0.059 Score=48.57 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 448
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.57 E-value=0.072 Score=64.17 Aligned_cols=192 Identities=16% Similarity=0.122 Sum_probs=88.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW-KNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (904)
+..++.|.|+.|.||||+.+.+.......... .+|.+..... -..+..+...++....-. .......-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 45789999999999999999987662000010 1111111000 000111111111000000 00011111122233
Q ss_pred HHc--CCcEEEEecccccccc---ccc----ccCCCCCCCCCCcEEEEEecchhhhccccCCceeecccCCHH-HHHHHH
Q 037222 257 SLG--EKRFVLLLDDLWERVD---LTK----VGVPLPGPQNTTSKVVFATRFIDVCGSMEADRKFLVACLSEK-DAWELF 326 (904)
Q Consensus 257 ~l~--~~r~LlVlDdv~~~~~---~~~----~~~~l~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf 326 (904)
.+. +.+-|+++|..-...+ ... +...+. ..|+.+|+||-..++.........+.-..+..+ +.....
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~---~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~ 472 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL---KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPT 472 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceE
Confidence 332 4789999999965322 222 222222 357899999998877443221111111111100 100000
Q ss_pred HHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Q 037222 327 REKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVLRRS 385 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~ 385 (904)
.+...+ .+. ...|-.|++++ |+|-.+..-|..+.. .....++.+++.+...
T Consensus 473 Ykl~~G-----~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 473 YKLLKG-----IPG-ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred EEECCC-----CCC-CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 000000 111 23567787776 888888887777655 3444666666666554
No 449
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=0.29 Score=58.00 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR--LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
..|++++|+.|+||||.+.+++... ........+..++.. .+. ..+-++...+.++.+.. ...+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 4699999999999999999998776 212222345555433 232 34555666666665432 2234455444443
Q ss_pred HHcCCcEEEEecccc
Q 037222 257 SLGEKRFVLLLDDLW 271 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~ 271 (904)
.++++. +|++|=.-
T Consensus 260 ~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 ALGDKH-LVLIDTVG 273 (767)
T ss_pred HhcCCC-EEEEeCCC
Confidence 344443 55566653
No 450
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.52 E-value=0.43 Score=50.89 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=58.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCC--CCC-----
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGL--SDD----- 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~--~~~----- 240 (904)
+++.+.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++-+.-.. ...
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rt 221 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRT 221 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceE
Confidence 4444433 344689999999999999999998864 33578888887764 455666665432110 000
Q ss_pred ----CCCCCCHHHH------HHHHHHHH--cCCcEEEEeccc
Q 037222 241 ----SWKNKSFEEK------AVDILRSL--GEKRFVLLLDDL 270 (904)
Q Consensus 241 ----~~~~~~~~~~------~~~l~~~l--~~~r~LlVlDdv 270 (904)
...++....+ .-.+.+++ +++.+|+++|++
T Consensus 222 vlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~ 263 (369)
T cd01134 222 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADST 263 (369)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 0012222211 12344455 578999999998
No 451
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.49 E-value=0.096 Score=56.32 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4679999988887765554445568899999999999999997664
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.48 E-value=0.58 Score=50.68 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCCC
Q 037222 167 LEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDDS 241 (904)
Q Consensus 167 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~ 241 (904)
...+..++.++ +.++|.++|+.|+||||-..+++..+ .....=..+..|+...-. ...+=++.-++-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 34444444443 47999999999999996665555555 212333456666544321 223333444444555432
Q ss_pred CCCCCHHHHHHHH
Q 037222 242 WKNKSFEEKAVDI 254 (904)
Q Consensus 242 ~~~~~~~~~~~~l 254 (904)
-..+..++...+
T Consensus 265 -vv~~~~el~~ai 276 (407)
T COG1419 265 -VVYSPKELAEAI 276 (407)
T ss_pred -EecCHHHHHHHH
Confidence 223444444443
No 453
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.27 Score=49.92 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++=|.+..+.+|.+...- ...+-|.++|.+|.|||-||++|+|.-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 3456789999998887641 245667799999999999999999986
No 454
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.48 E-value=0.1 Score=51.28 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV 217 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 217 (904)
.++|.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 56775555443
No 455
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.27 Score=47.01 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-..+.|.|+.|+|||||.+.++.-.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3567899999999999999998775
No 456
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.46 E-value=0.18 Score=52.64 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
.-+++.|.|.+|+||||+|.+++.... ..-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457899999999999999999866541 2234678888764
No 457
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.34 Score=55.87 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=58.9
Q ss_pred ccccchHHHHHHHHHHHhc---------C---CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------E---SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.++=|.++.+.+|.+-+.- . +.+-|.++|++|.|||-||++|+... . .-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 3456788888888887642 1 35678899999999999999999887 1 344555432
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWE 272 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 272 (904)
+++..- -..+++.+.+...+.=..++++|.+|.+++
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222110 112333333333333356899999999975
No 458
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.44 E-value=0.29 Score=52.29 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
.-..++|+|..|+|||||++.+.... . .+..+...+.+. .++.++.......-+... ...+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44678999999999999999988765 2 234444555433 355565555555432211 0111111111
Q ss_pred ---HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 122334444 6899999999983
No 459
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.42 E-value=1.6 Score=45.81 Aligned_cols=129 Identities=9% Similarity=0.015 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhccc-----------CCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 166 QLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLE-----------SPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 166 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-----------~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
.-+++...+..+. .....++|+.|+||+++|..++....- ...|.|..........
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------------ 72 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------------ 72 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC------------
Confidence 4456777777655 456779999999999999998877621 1123332221111100
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecc-hhhhc-
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRF-IDVCG- 304 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~~v~~- 304 (904)
.....++ ++.+.+.+ .+++=++|+|+++.. ..+..+...+. .-..++.+|++|.+ ..+..
T Consensus 73 ---------~~I~idq-iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LE-EPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 73 ---------RLHSIET-PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLE-DPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ---------CcCcHHH-HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhh-cCCCCeEEEEEeCChhhCcHH
Confidence 0011222 12233332 245568899999753 44555555554 33445666665555 44432
Q ss_pred cccCCceeecccC
Q 037222 305 SMEADRKFLVACL 317 (904)
Q Consensus 305 ~~~~~~~~~l~~L 317 (904)
..+....+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 2334556666654
No 460
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.42 E-value=0.37 Score=49.78 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhcccCCCCCCEE-EEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCV-IWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 249 (904)
.-..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++.+.-.... ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467899999999999996 5555442 23444 677777664 45666666654322111 0111111111
Q ss_pred -----HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 -----KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 -----~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++..|+|+||+-
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 122333444 6899999999994
No 461
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.27 Score=49.08 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=55.8
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
+++=|=.++++++.+...- +..+-|.++|++|.|||-+|++|+++- ...| +.|-.+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacf-----irvigs--- 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVIGS--- 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceE-----EeehhH---
Confidence 3445667788888776532 356678899999999999999999986 3333 322211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCC-cEEEEecccc
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEK-RFVLLLDDLW 271 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~ 271 (904)
+-+++.+ .....+++.+.+.-+.| -++|.+|.++
T Consensus 246 elvqkyv-------------gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ELVQKYV-------------GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHh-------------hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1111111 12234556666666554 5677788885
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.40 E-value=0.059 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999864
No 463
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.39 E-value=0.28 Score=47.33 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHHHHHHc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNK-SFEEKAVDILRSLG 259 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l~ 259 (904)
++.|.|.+|+||||+|..+.... . . ..+++.....+ ..+..+.|..........+... ....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68999999999999999998764 1 1 23444444333 3345555544332222222211 11223333333333
Q ss_pred CCcEEEEeccc
Q 037222 260 EKRFVLLLDDL 270 (904)
Q Consensus 260 ~~r~LlVlDdv 270 (904)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 2 337888987
No 464
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.37 E-value=0.23 Score=48.77 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC-CC----CCCC
Q 037222 170 VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS-DD----SWKN 244 (904)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~----~~~~ 244 (904)
++..|-.....-..|.|++|+|||||.+.++.-.......|-..--+-+.+. .+|+..+... .- ..+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer-------sEIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER-------SEIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc-------chhhccccCCchhhhhhhhhh
Confidence 5556665666667899999999999999998876322334533222212221 1222211100 00 0011
Q ss_pred CCHHHHHHHHHHHHc-CCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchh
Q 037222 245 KSFEEKAVDILRSLG-EKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 245 ~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
.+..-...-+....+ -.+=++|+|.+-...+-..+...+ ..|.++|.|.--..
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaHG~~ 254 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAHGNG 254 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeecccc
Confidence 111111122222232 246789999998776665555444 36788887766433
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.37 E-value=0.42 Score=51.25 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 466
>PRK05922 type III secretion system ATPase; Validated
Probab=93.34 E-value=0.31 Score=54.02 Aligned_cols=90 Identities=14% Similarity=0.229 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCCC-----CCCCCCHHH-
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSDD-----SWKNKSFEE- 249 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 249 (904)
..-..++|+|..|+|||||++.+.... ..+...++.+.+. ....+.+.+.......... ..+......
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 345678999999999999999998764 2344444444443 2344555554443322110 001111111
Q ss_pred ----HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ----KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ----~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122345555 6899999999994
No 467
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.30 E-value=0.36 Score=49.48 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=43.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC--CCHHHHHHHHHHHh--CCCCCC--CCCCCHHHHHHHH
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKIQDDIGKKI--GLSDDS--WKNKSFEEKAVDI 254 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 254 (904)
+|+|.|..|+||||+++.+.+.. ...+ ..+..++...- ++-...-..+..+. +.+-+- .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998876 2111 12334433221 22222222222221 111111 2455677777777
Q ss_pred HHHHcCC
Q 037222 255 LRSLGEK 261 (904)
Q Consensus 255 ~~~l~~~ 261 (904)
+.+-+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7776654
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.29 E-value=0.071 Score=49.53 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 469
>PRK13975 thymidylate kinase; Provisional
Probab=93.27 E-value=0.072 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 470
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.25 E-value=0.19 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|.|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 471
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.25 E-value=0.091 Score=53.59 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred hhhHHHHhhhccceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 037222 14 FNRCLDCFLGKAAYLRNLPDNLVDLETELGRLIAAKNDVMMRVVNAERQQMRRLGQVEWWVSRVDAVKTGADELITDGS 92 (904)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~~~~~~~~~ed~~d~~~ 92 (904)
++.+-.........+.-++.+++-++.|++.||.||..+ +++...+.+. ....+.++-..||++|.++|.+.
T Consensus 302 L~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 302 LKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeeehhh
Confidence 666666666666667788889999999999999999886 5554444433 88999999999999999999874
No 472
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.24 E-value=0.28 Score=54.48 Aligned_cols=92 Identities=16% Similarity=0.307 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
.-..++|.|..|+|||||+.++.... . ..+-+.++++-+.+.. .+.++++++...-.... ...+......
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999988775 2 2233577888787654 45666666654322111 0111111222
Q ss_pred ---HHHHHHHHH---cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL---GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l---~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 223455666 4689999999994
No 473
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.24 E-value=0.078 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|.|+|+.|+||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3568999999999999999999875
No 474
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.23 E-value=0.069 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998875
No 475
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.21 E-value=0.21 Score=54.37 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=47.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQD 229 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 229 (904)
..++|.++.+..+...+..+ +-+.+.|.+|+|||+||+.++... . ...++|.+.....+.++..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 34789888888877777654 456789999999999999999987 2 2345666666666666554
No 476
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.21 E-value=0.14 Score=50.93 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+.+..+...+-++..|.|.+|+||||+++.+....
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3444454544556788999999999999999988877
No 477
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.32 Score=54.09 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 249 (904)
.-..++|+|..|+|||||++.+.... ..+.+++..+.... +..++...+...-+... ...+......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45679999999999999999988654 23444444454443 45555555554432221 0011222222
Q ss_pred ---HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ---KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ---~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 122344555 6899999999994
No 478
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.16 E-value=0.57 Score=49.39 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.-.++.|.|.+|+||||++.+++... . ..+-..++|+++.. +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-I-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 34588899999999999999988775 1 22234678887655 345666665544
No 479
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.15 E-value=0.28 Score=47.67 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=63.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC---CCCHHHHHHHHH--HHhCCCCC-CCCCCCHHH--
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK---DLRLEKIQDDIG--KKIGLSDD-SWKNKSFEE-- 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~--~~l~~~~~-~~~~~~~~~-- 249 (904)
....|-|+|..|-||||.|..+.-+.. ...+ .+..|-.-+ ...-...+..+- ........ .+...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 457899999999999999998887761 2233 233333322 223333333320 00000000 111111111
Q ss_pred -----HHHHHHHHHcC-CcEEEEecccccc-----cccccccCCCCCCCCCCcEEEEEecch
Q 037222 250 -----KAVDILRSLGE-KRFVLLLDDLWER-----VDLTKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 250 -----~~~~l~~~l~~-~r~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
.....++.+.. +-=++|||.+-.. .+.+++...+. ....+..||+|-|..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 12233444434 4559999999532 33445555554 455678999999964
No 480
>PTZ00494 tuzin-like protein; Provisional
Probab=93.13 E-value=1.6 Score=47.57 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=96.9
Q ss_pred cccccchHHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
...+|.|+++-..+.+.|.. ...+++.+.|.-|.||++|.+...... . -..++|.+..+ ++-++.|.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 45678998887766666654 478999999999999999999987765 1 24677877754 567888999
Q ss_pred HhCCCCCCCCCCCHHHHHHH---HHHHHcCCcEEEEecccccccccccc---cCCCCCCCCCCcEEEEEecchhhhccc-
Q 037222 234 KIGLSDDSWKNKSFEEKAVD---ILRSLGEKRFVLLLDDLWERVDLTKV---GVPLPGPQNTTSKVVFATRFIDVCGSM- 306 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~---l~~~l~~~r~LlVlDdv~~~~~~~~~---~~~l~~~~~~gs~IivTtR~~~v~~~~- 306 (904)
.++.+.-..=..-.+-..+. -.....++.-+||+-= .+-.++..+ ...|. ....-++|++---.+.+....
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLa-cDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLV-SDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHH-ccchhheeeeechHhhhchhhc
Confidence 99876421111112222222 2222345555555421 111122111 01122 333456777655544442221
Q ss_pred --cCCceeecccCCHHHHHHHHHHhh
Q 037222 307 --EADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 307 --~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
..-..|.+.+++.++|.++..+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 223468899999999999877754
No 481
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.07 E-value=0.14 Score=58.49 Aligned_cols=55 Identities=25% Similarity=0.400 Sum_probs=42.9
Q ss_pred cccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 037222 159 TVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 218 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 218 (904)
+++--.+-++++..||.. ...+++.+.|++|+||||.++.+++.. .|+..-|...
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 344456668888888875 235789999999999999999999876 5777778753
No 482
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.41 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999999865
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.06 E-value=0.077 Score=53.34 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999875
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.03 E-value=0.091 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 485
>PRK14527 adenylate kinase; Provisional
Probab=93.03 E-value=0.086 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|+|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 486
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.01 E-value=0.31 Score=54.28 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCC-----CCCCCCHHH-
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQDDIGKKIGLSDD-----SWKNKSFEE- 249 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 249 (904)
..-..++|.|..|+|||||++.++... . .+..+++-+.+ ...+.++.+.+...-+.... ..+......
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~ 235 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERA 235 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHH
Confidence 355788999999999999999998765 2 23333333443 33455555555443222110 001111111
Q ss_pred ----HHHHHHHHH--cCCcEEEEecccc
Q 037222 250 ----KAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 250 ----~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..-.+.+++ +++.+|+++||+-
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 236 KAAYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 222344555 5889999999984
No 487
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.99 E-value=0.066 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 037222 182 IGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 488
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.98 E-value=0.083 Score=54.12 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEcCCCCcHHHHHHHHHHhc
Q 037222 184 LYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 184 I~G~gGiGKTtLa~~v~~~~ 203 (904)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988
No 489
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.97 E-value=0.079 Score=51.69 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV 217 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 217 (904)
.-.|++|+|+.|+|||||.+.+..-. ..=++.+||.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEEC
Confidence 45689999999999999999987654 2223567763
No 490
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.97 E-value=0.15 Score=54.32 Aligned_cols=48 Identities=31% Similarity=0.357 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQD 229 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 229 (904)
.+++.+.|.||+||||+|.+.+-...+ ....++-|++....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~---~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE---SGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH---cCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999987666521 224466666655555555544
No 491
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.96 E-value=0.32 Score=54.43 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC--CEEEEEEecCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF--DCVIWVVVSKDL-RLEKIQDDIGKKIGLSDD-----SWKNKSFEE 249 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~ 249 (904)
.-..++|.|..|+|||||+.++.+.. .....+ ..++++-+.+.. .+.++..++...-.+... ..+......
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 44678999999999999999998875 222111 156777777654 456666666543322110 001111111
Q ss_pred -----HHHHHHHHHc---CCcEEEEecccc
Q 037222 250 -----KAVDILRSLG---EKRFVLLLDDLW 271 (904)
Q Consensus 250 -----~~~~l~~~l~---~~r~LlVlDdv~ 271 (904)
..-.+.++++ ++.+|+++||+-
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 2234556664 788999999994
No 492
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.94 E-value=0.034 Score=54.77 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=56.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHHHc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS-WKNKSFEEKAVDILRSLG 259 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~~l~ 259 (904)
++.|.|..|.||||+++.+.-... ..+-.+.+|. .. .. -.....++..++..... ........-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~--la~~G~~v~a--~~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI--MAQIGSFVPA--ES-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH--HHHhCCCeee--hh-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHH
Confidence 467999999999999999884320 0111111111 00 00 00011111111111100 011122233334555554
Q ss_pred C--CcEEEEeccccccccc-------ccccCCCCCCCCCCcEEEEEecchhhhccc
Q 037222 260 E--KRFVLLLDDLWERVDL-------TKVGVPLPGPQNTTSKVVFATRFIDVCGSM 306 (904)
Q Consensus 260 ~--~r~LlVlDdv~~~~~~-------~~~~~~l~~~~~~gs~IivTtR~~~v~~~~ 306 (904)
. ++-++++|+.-...+. ..+...+. ...+..+|++|...++....
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~--~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL--EKIGALTLFATHYHELTKLA 128 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCeEEEEecHHHHHHHh
Confidence 4 8899999998543221 11222221 12367899999988775543
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.94 E-value=0.078 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.90 E-value=0.1 Score=52.14 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 495
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.89 E-value=0.33 Score=53.80 Aligned_cols=93 Identities=13% Similarity=0.206 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCC--CCCC---------EEEEEEecCCCCHHHHHHHHHHHhC-CCCC-----
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP--TNFD---------CVIWVVVSKDLRLEKIQDDIGKKIG-LSDD----- 240 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~----- 240 (904)
.-..++|.|-.|+|||||+.++.+.. ... ...| .++++.+.+.....+.+.+.+..-+ +...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44678999999999999999998775 210 0022 6677788887666666665555544 2110
Q ss_pred CCCCCCHHH-----HHHHHHHHHc---CCcEEEEecccc
Q 037222 241 SWKNKSFEE-----KAVDILRSLG---EKRFVLLLDDLW 271 (904)
Q Consensus 241 ~~~~~~~~~-----~~~~l~~~l~---~~r~LlVlDdv~ 271 (904)
..+...... ..-.+.++++ ++.+|+++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 011112222 1223555554 689999999994
No 496
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.87 E-value=0.097 Score=48.70 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS 238 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (904)
.+++.|+|.+|+||||+.+.+.... +. +. -.+..++.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~--~~---------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VK--HK---------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hh--ce---------eeeHhHHHHHHHHHhCCc
Confidence 5789999999999999998877654 11 10 013456666777666654
No 497
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.85 E-value=0.22 Score=54.37 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
.....|.|.|+.|+||||+++.+.+.. .......++. +..+ ++...... ..+ ..... ...+.......++.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp--~E~~~~~~-~~~-i~q~e-vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDP--IEYVHRNK-RSL-INQRE-VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCC--hhhhccCc-cce-EEccc-cCCCCcCHHHHHHH
Confidence 345789999999999999999988765 2333444443 2221 11110000 000 00000 01111234555677
Q ss_pred HHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchh
Q 037222 257 SLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
.++..+=.|++|.+.+...+...... ...|-.|+.|.-..+
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNS 231 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCC
Confidence 78888999999999876555432221 223545666655433
No 498
>PRK13948 shikimate kinase; Provisional
Probab=92.83 E-value=0.1 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 499
>PLN02200 adenylate kinase family protein
Probab=92.80 E-value=0.1 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|.|++|+||||+|+.++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998875
No 500
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.4 Score=47.44 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCcEEEEeccccccccccccc------CCCCCCCCCCcEEEEEecchhhhccccCCcee
Q 037222 250 KAVDILRSLGEKRFVLLLDDLWERVDLTKVG------VPLPGPQNTTSKVVFATRFIDVCGSMEADRKF 312 (904)
Q Consensus 250 ~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~------~~l~~~~~~gs~IivTtR~~~v~~~~~~~~~~ 312 (904)
....+.+.+-=++-+.|||..++-.+.+.+. ..+. ..|+-++|.|-.+.++........|
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr---~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR---EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh---cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344555555677899999998765544431 2222 3466677777778887776544444
Done!